Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612040 | XP_024636120.1 | 54.065 | 246 | 84 | 3 | 1 | 218 | 29 | 273 | 2.04e-69 | 245 |
| Msa0612040 | XP_024636120.1 | 94.492 | 472 | 10 | 1 | 238 | 709 | 1 | 456 | 0.0 | 912 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612040 | A0A072UPJ1 | 54.065 | 246 | 84 | 3 | 1 | 218 | 29 | 273 | 9.74e-70 | 245 |
| Msa0612040 | A0A072UPJ1 | 94.492 | 472 | 10 | 1 | 238 | 709 | 1 | 456 | 0.0 | 912 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100600 | Msa0612040 | 0.815663 | 8.236057e-52 | -8.615850e-47 |
| Msa0114600 | Msa0612040 | 0.802030 | 6.806298e-49 | -8.615850e-47 |
| Msa0612040 | Msa0652160 | 0.914622 | 1.544784e-84 | -8.615850e-47 |
| Msa0612040 | Msa0694710 | 0.831327 | 1.777852e-55 | -8.615850e-47 |
| Msa0612040 | Msa1166670 | 0.820273 | 7.482300e-53 | -8.615850e-47 |
| Msa0612040 | Msa1420830 | 0.807121 | 5.899691e-50 | -8.615850e-47 |
| Msa0134580 | Msa0612040 | 0.812268 | 4.618747e-51 | -8.615850e-47 |
| Msa0192050 | Msa0612040 | 0.807823 | 4.187488e-50 | -8.615850e-47 |
| Msa0388250 | Msa0612040 | 0.803615 | 3.203460e-49 | -8.615850e-47 |
| Msa0433630 | Msa0612040 | 0.800447 | 1.435145e-48 | -8.615850e-47 |
| Msa0521510 | Msa0612040 | 0.806187 | 9.293211e-50 | -8.615850e-47 |
| Msa0556620 | Msa0612040 | 0.883694 | 3.613262e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612040 | MtrunA17_Chr4g0045601 | 94.492 | 472 | 10 | 1 | 238 | 709 | 1 | 456 | 0.0 | 912 |
| Msa0612040 | MtrunA17_Chr4g0045601 | 54.065 | 246 | 84 | 3 | 1 | 218 | 29 | 273 | 1.87e-73 | 245 |
| Msa0612040 | MtrunA17_Chr4g0045591 | 74.786 | 234 | 33 | 3 | 12 | 219 | 26 | 259 | 4.29e-106 | 324 |
| Msa0612040 | MtrunA17_Chr4g0045591 | 57.931 | 290 | 103 | 5 | 238 | 525 | 1 | 273 | 4.32e-87 | 275 |
| Msa0612040 | MtrunA17_Chr8g0335221 | 33.444 | 302 | 173 | 7 | 262 | 547 | 53 | 342 | 2.08e-39 | 150 |
| Msa0612040 | MtrunA17_Chr8g0335221 | 28.692 | 237 | 134 | 7 | 21 | 228 | 78 | 308 | 6.37e-21 | 95.9 |
| Msa0612040 | MtrunA17_Chr7g0215661 | 33.333 | 285 | 165 | 9 | 251 | 527 | 48 | 315 | 3.12e-29 | 121 |
| Msa0612040 | MtrunA17_Chr7g0215661 | 28.000 | 175 | 100 | 3 | 71 | 219 | 125 | 299 | 6.05e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612040 | AT3G59670.1 | 41.379 | 493 | 225 | 19 | 256 | 709 | 50 | 517 | 3.56e-80 | 265 |
| Msa0612040 | AT3G59670.1 | 34.034 | 238 | 118 | 6 | 18 | 218 | 75 | 310 | 1.38e-22 | 102 |
| Msa0612040 | AT4G37440.3 | 34.875 | 281 | 164 | 7 | 261 | 538 | 68 | 332 | 1.03e-36 | 143 |
| Msa0612040 | AT4G37440.3 | 31.839 | 223 | 102 | 8 | 25 | 211 | 96 | 304 | 3.04e-21 | 97.4 |
| Msa0612040 | AT4G37440.2 | 34.875 | 281 | 164 | 7 | 261 | 538 | 68 | 332 | 1.44e-36 | 143 |
| Msa0612040 | AT4G37440.2 | 32.287 | 223 | 101 | 9 | 25 | 211 | 96 | 304 | 2.60e-21 | 97.8 |
| Msa0612040 | AT4G37440.1 | 34.875 | 281 | 164 | 7 | 261 | 538 | 68 | 332 | 2.02e-36 | 143 |
| Msa0612040 | AT4G37440.1 | 32.287 | 223 | 101 | 9 | 25 | 211 | 96 | 304 | 3.37e-21 | 97.8 |
| Msa0612040 | AT3G50040.3 | 33.702 | 181 | 105 | 6 | 337 | 510 | 108 | 280 | 3.07e-20 | 94.0 |
| Msa0612040 | AT3G50040.3 | 27.168 | 173 | 100 | 4 | 72 | 218 | 108 | 280 | 8.78e-13 | 71.2 |
| Msa0612040 | AT3G50040.2 | 33.702 | 181 | 105 | 6 | 337 | 510 | 108 | 280 | 4.58e-20 | 94.0 |
| Msa0612040 | AT3G50040.2 | 27.168 | 173 | 100 | 4 | 72 | 218 | 108 | 280 | 1.38e-12 | 70.9 |
| Msa0612040 | AT3G50040.4 | 33.702 | 181 | 105 | 6 | 337 | 510 | 108 | 280 | 4.58e-20 | 94.0 |
| Msa0612040 | AT3G50040.4 | 27.168 | 173 | 100 | 4 | 72 | 218 | 108 | 280 | 1.38e-12 | 70.9 |
| Msa0612040 | AT3G50040.1 | 33.702 | 181 | 105 | 6 | 337 | 510 | 108 | 280 | 4.58e-20 | 94.0 |
| Msa0612040 | AT3G50040.1 | 27.168 | 173 | 100 | 4 | 72 | 218 | 108 | 280 | 1.38e-12 | 70.9 |
Find 151 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAAGTTTGCGTTAATTA+AGG | 0.236636 | 4_2:+60422346 | Msa0612040:CDS |
| AGAAAACCTCGAAACATTTC+TGG | 0.246323 | 4_2:-60424344 | None:intergenic |
| CTCTGATGTGGCGTCTAAAA+TGG | 0.252327 | 4_2:+60423461 | Msa0612040:CDS |
| CTCTTTCGTGGCGTTTGAAA+TGG | 0.259514 | 4_2:+60419035 | Msa0612040:CDS |
| GCAAGCCCTCATGATACTTT+TGG | 0.286985 | 4_2:+60422653 | Msa0612040:CDS |
| TGAACTTCAGGAGGTGAAAA+TGG | 0.307775 | 4_2:+60425156 | Msa0612040:CDS |
| AGTCTTATTCACTGATTATC+AGG | 0.308225 | 4_2:-60425394 | None:intergenic |
| GACAGCTGTGTTTCAAGCTT+TGG | 0.311111 | 4_2:+60424538 | Msa0612040:CDS |
| TTTCACCTCCTGAAGCTTCT+GGG | 0.320720 | 4_2:-60425200 | None:intergenic |
| CTGTACTGGTGACTTGAAAA+TGG | 0.334286 | 4_2:-60423616 | None:intergenic |
| ACTACCTCTGATGCTGAAAA+TGG | 0.334984 | 4_2:+60418524 | Msa0612040:CDS |
| GTCTGATGCTGATGGCTCTT+TGG | 0.338203 | 4_2:+60423870 | Msa0612040:CDS |
| TGTTCTGATGCATGAACTTC+AGG | 0.338964 | 4_2:+60425144 | Msa0612040:CDS |
| AATTTGCTTGAGTCTTATTT+CGG | 0.351566 | 4_2:-60423485 | None:intergenic |
| TCTGTTCTTGATGAACAAAT+TGG | 0.353691 | 4_2:+60422425 | Msa0612040:CDS |
| CAATCCCACCCAGAAGCTTC+AGG | 0.360739 | 4_2:+60425192 | Msa0612040:CDS |
| CTCAATTATATCAGGAATAC+TGG | 0.361289 | 4_2:-60424569 | None:intergenic |
| CCATTCCCAGCAGAATTTGT+AGG | 0.379539 | 4_2:-60424427 | None:intergenic |
| TGAGAGCACTGTTGGTTTGT+TGG | 0.381844 | 4_2:+60424588 | Msa0612040:CDS |
| GGAATTAAAGTCACCTTGTT+CGG | 0.384584 | 4_2:-60422685 | None:intergenic |
| AGAGGAAGGTGACTGATGAT+TGG | 0.385362 | 4_2:+60418996 | Msa0612040:CDS |
| GGGGAGCGCAAAGCTGGTTC+AGG | 0.393635 | 4_2:+60425343 | Msa0612040:CDS |
| GAAGTGGATTCAGAGTTCTT+TGG | 0.397498 | 4_2:+60422617 | Msa0612040:CDS |
| TCGGCCTTGGTTGCCGACTC+TGG | 0.398219 | 4_2:+60424634 | Msa0612040:CDS |
| TCAGAGTTCTTTGGTGAGAA+TGG | 0.403213 | 4_2:+60422626 | Msa0612040:CDS |
| CTCGAATATTCAGTTGCATC+AGG | 0.409498 | 4_2:-60422539 | None:intergenic |
| TCCTTAATTAACGCAAACTT+TGG | 0.410676 | 4_2:-60422347 | None:intergenic |
| GCACATCACCATGAAGAATA+AGG | 0.413362 | 4_2:-60424384 | None:intergenic |
| ACCTCCTGAAGCTTCTGGGT+GGG | 0.414016 | 4_2:-60425196 | None:intergenic |
| CTGGTTAATATTCGTGCTCC+TGG | 0.419824 | 4_2:+60425708 | Msa0612040:three_prime_UTR |
| CTTGAATACTCAGTTGCATC+AGG | 0.420855 | 4_2:-60418488 | None:intergenic |
| TGTCACCCTCCAATCGGCCT+TGG | 0.422704 | 4_2:+60424621 | Msa0612040:CDS |
| AAGGAGAAGGCGGAAGAGAA+AGG | 0.427652 | 4_2:+60422365 | Msa0612040:CDS |
| ACAGTGCTCTCAATTATATC+AGG | 0.430041 | 4_2:-60424577 | None:intergenic |
| AGAAGCTTCAGGAGGTGAAA+AGG | 0.432992 | 4_2:+60425203 | Msa0612040:CDS |
| AGTATTACAGTGTCATTTCC+CGG | 0.434495 | 4_2:+60425530 | Msa0612040:three_prime_UTR |
| GCATTAACGATCTACTATAT+AGG | 0.436953 | 4_2:+60419605 | Msa0612040:CDS |
| AGAGGAAGTTGACAGATCAT+TGG | 0.438955 | 4_2:+60423422 | Msa0612040:CDS |
| CATGGCCAATCCCGTCGTTA+AGG | 0.441041 | 4_2:+60422397 | Msa0612040:CDS |
| GAAGTGCAGTCTAAGCTCTT+TGG | 0.444086 | 4_2:+60418566 | Msa0612040:CDS |
| AATCACCTTGTTGGGACGTC+AGG | 0.444564 | 4_2:-60418626 | None:intergenic |
| TCTAAGCTCTTTGGTGAGAA+TGG | 0.445825 | 4_2:+60418575 | Msa0612040:CDS |
| TTTAAATAAGATGTCAACTT+GGG | 0.449583 | 4_2:-60425488 | None:intergenic |
| CACTGATTATCAGGTTCCCC+AGG | 0.452914 | 4_2:-60425385 | None:intergenic |
| ACTTCATTCGACCTCTTTCG+TGG | 0.457892 | 4_2:+60419023 | Msa0612040:CDS |
| ATCGGATGTTGATGGCTCTT+CGG | 0.458058 | 4_2:+60419336 | Msa0612040:CDS |
| TACTTTAGAGAATAAGAAAT+CGG | 0.459790 | 4_2:+60419318 | Msa0612040:intron |
| CAAAGTCCTACAAATTCTGC+TGG | 0.460562 | 4_2:+60424421 | Msa0612040:CDS |
| AAGATGTACCTGTGCTTGAA+TGG | 0.461909 | 4_2:+60419545 | Msa0612040:CDS |
| TTACCAAGATATGAGAAAAG+AGG | 0.475706 | 4_2:-60419214 | None:intergenic |
| CCTACAAATTCTGCTGGGAA+TGG | 0.476255 | 4_2:+60424427 | Msa0612040:CDS |
| CACAGGTTGATGTCGTTGGC+TGG | 0.477650 | 4_2:+60418426 | None:intergenic |
| TCAATTGAAAATGAAGACAT+AGG | 0.478092 | 4_2:-60425607 | None:intergenic |
| AAGCGTGGGGAGCGCAAAGC+TGG | 0.481385 | 4_2:+60425337 | Msa0612040:CDS |
| GATATAATTGAGAGCACTGT+TGG | 0.485330 | 4_2:+60424580 | Msa0612040:CDS |
| CATTTCAAACGCCACGAAAG+AGG | 0.485416 | 4_2:-60419034 | None:intergenic |
| GCATGCCCTCGAGATCCATT+TGG | 0.488248 | 4_2:+60418602 | Msa0612040:CDS |
| AGTGTCATTTCCCGGGGAAG+AGG | 0.491709 | 4_2:+60425538 | Msa0612040:three_prime_UTR |
| GTTACAGTCACAACAGATAG+TGG | 0.495932 | 4_2:-60425441 | None:intergenic |
| GTTTAAATAAGATGTCAACT+TGG | 0.498408 | 4_2:-60425489 | None:intergenic |
| GTTGGGACGTCAGGACCAAA+TGG | 0.499364 | 4_2:-60418617 | None:intergenic |
| AAAGTATAGTTCCTCTTCCC+CGG | 0.499685 | 4_2:-60425549 | None:intergenic |
| ACGGCATCTGTTGGAGTTGG+AGG | 0.501116 | 4_2:+60424454 | Msa0612040:CDS |
| AATGGATACACGGCATCTGT+TGG | 0.502595 | 4_2:+60424445 | Msa0612040:CDS |
| ATCTACTATATAGGATCGAC+AGG | 0.502646 | 4_2:+60419614 | Msa0612040:CDS |
| GAAGCTTCAGGAGGTGAAAA+GGG | 0.504312 | 4_2:+60425204 | Msa0612040:CDS |
| AAGCTTGAAACACAGCTGTC+AGG | 0.505459 | 4_2:-60424535 | None:intergenic |
| ACATTGAAAATCTACAATGT+AGG | 0.506632 | 4_2:+60424284 | Msa0612040:CDS |
| TCACGTCCAGAAATGTTTCG+AGG | 0.507311 | 4_2:+60424338 | Msa0612040:CDS |
| GGTTGGAACATGAAGTCCCC+TGG | 0.508821 | 4_2:+60425367 | Msa0612040:CDS |
| AATAAGAAATCGGATGTTGA+TGG | 0.517285 | 4_2:+60419328 | Msa0612040:CDS |
| AAGATGTCATCGATTCAATC+AGG | 0.517324 | 4_2:+60419641 | Msa0612040:CDS |
| AAGATCAAGTGACGCTGAAG+TGG | 0.518562 | 4_2:+60422601 | Msa0612040:CDS |
| AGTCGGCAACCAAGGCCGAT+TGG | 0.521202 | 4_2:-60424630 | None:intergenic |
| TCAGGAGGTGAAAAGGGAAG+TGG | 0.522015 | 4_2:+60425210 | Msa0612040:CDS |
| CACCTCCTGAAGCTTCTGGG+TGG | 0.522706 | 4_2:-60425197 | None:intergenic |
| CTCCACCTTAACGACGGGAT+TGG | 0.526761 | 4_2:-60422402 | None:intergenic |
| GCAAAGCTGGTTCAGGTGGT+TGG | 0.527885 | 4_2:+60425350 | Msa0612040:CDS |
| CATTGAAAATCTACAATGTA+GGG | 0.528238 | 4_2:+60424285 | Msa0612040:CDS |
| AGTCACCTTGTTCGGAACTC+AGG | 0.528629 | 4_2:-60422677 | None:intergenic |
| TGCTGATGTCACCCTCCAAT+CGG | 0.529019 | 4_2:+60424615 | Msa0612040:CDS |
| TACACGGCATCTGTTGGAGT+TGG | 0.531038 | 4_2:+60424451 | Msa0612040:CDS |
| AAGTCACCAGTACAGAAGTA+AGG | 0.532646 | 4_2:+60423624 | Msa0612040:CDS |
| GTGTGACATGGAAACACATA+AGG | 0.532666 | 4_2:+60419120 | Msa0612040:CDS |
| GTGAAAAGGGAAGTGGAAGA+AGG | 0.534943 | 4_2:+60425217 | Msa0612040:CDS |
| CTTGTTTCGTACGAGGCACC+AGG | 0.535776 | 4_2:-60425726 | None:intergenic |
| GTATTACAGTGTCATTTCCC+GGG | 0.537443 | 4_2:+60425531 | Msa0612040:three_prime_UTR |
| CGGCAACCAAGGCCGATTGG+AGG | 0.540629 | 4_2:-60424627 | None:intergenic |
| GGCAACCAAGGCCGATTGGA+GGG | 0.541238 | 4_2:-60424626 | None:intergenic |
| GTTTGCGTTAATTAAGGAGA+AGG | 0.542510 | 4_2:+60422352 | Msa0612040:CDS |
| TGGACGAACAAGGGTGATGT+TGG | 0.545407 | 4_2:+60422497 | Msa0612040:CDS |
| TCAGGAGGTGAAAATGGAAG+TGG | 0.551172 | 4_2:+60425162 | Msa0612040:CDS |
| GTGTCAGTGCATTTGAGCAA+AGG | 0.557356 | 4_2:-60424232 | None:intergenic |
| GGCCAATCCCGTCGTTAAGG+TGG | 0.558790 | 4_2:+60422400 | Msa0612040:CDS |
| GGAAGTTGACAGATCATTGG+AGG | 0.560199 | 4_2:+60423425 | Msa0612040:CDS |
| GGAAGGTGACTGATGATTGG+AGG | 0.567573 | 4_2:+60418999 | Msa0612040:CDS |
| ACAGACTCCACCTTAACGAC+GGG | 0.568340 | 4_2:-60422407 | None:intergenic |
| TGATGCATCTAATGAAATTG+AGG | 0.570248 | 4_2:+60418463 | Msa0612040:CDS |
| GTTGGAACATGAAGTCCCCT+GGG | 0.571232 | 4_2:+60425368 | Msa0612040:CDS |
| GTATCAGTCCATTCAAGCAC+AGG | 0.577428 | 4_2:-60419553 | None:intergenic |
| CAATTGAAAATGAAGACATA+GGG | 0.580017 | 4_2:-60425606 | None:intergenic |
| TTCACCAGAGTCGGCAACCA+AGG | 0.581301 | 4_2:-60424638 | None:intergenic |
| GAGCGCAAAGCTGGTTCAGG+TGG | 0.583476 | 4_2:+60425346 | Msa0612040:CDS |
| GTATAAATGTAGGAAGAGGA+AGG | 0.589946 | 4_2:+60418982 | Msa0612040:intron |
| ACTCACATGTTCACCAGAGT+CGG | 0.590003 | 4_2:-60424647 | None:intergenic |
| GTATGACAAGGTAAAGCATA+CGG | 0.590399 | 4_2:+60423546 | Msa0612040:CDS |
| TATCTCTTGCATGTTACAAG+AGG | 0.590833 | 4_2:-60425671 | None:intergenic |
| ATCAGAGTCTGTATCAGCAA+AGG | 0.596262 | 4_2:-60422564 | None:intergenic |
| AAGTATAGTTCCTCTTCCCC+GGG | 0.600473 | 4_2:-60425548 | None:intergenic |
| TTCTGCTGGGAATGGATACA+CGG | 0.600834 | 4_2:+60424435 | Msa0612040:CDS |
| TTAAATAAGATGTCAACTTG+GGG | 0.601404 | 4_2:-60425487 | None:intergenic |
| GTTCTGAAGGAGCAGCTCAA+AGG | 0.601866 | 4_2:-60424263 | None:intergenic |
| AATAAGAAGTCTGATGCTGA+TGG | 0.604157 | 4_2:+60423862 | Msa0612040:CDS |
| TCGAATATTCAGTTGCATCA+GGG | 0.605831 | 4_2:-60422538 | None:intergenic |
| TATTGTGAGTTGGACGAACA+AGG | 0.606643 | 4_2:+60422487 | Msa0612040:CDS |
| GTGTGAATAAAAGAAAGCGT+GGG | 0.607422 | 4_2:+60425323 | Msa0612040:CDS |
| TCAGGACCAAATGGATCTCG+AGG | 0.607542 | 4_2:-60418608 | None:intergenic |
| TTGGTCCTGAGTTCCGAACA+AGG | 0.611859 | 4_2:+60422672 | Msa0612040:CDS |
| CAGATGTTGATATTGTGAGT+TGG | 0.612336 | 4_2:+60422477 | Msa0612040:CDS |
| ACTGATTATCAGGTTCCCCA+GGG | 0.614893 | 4_2:-60425384 | None:intergenic |
| AGGGTCCGCACACTGAAAAG+TGG | 0.615591 | 4_2:+60424304 | Msa0612040:CDS |
| AAAGTCCTACAAATTCTGCT+GGG | 0.619351 | 4_2:+60424422 | Msa0612040:CDS |
| AGAGAAAGGTTTAAGAGACA+TGG | 0.620727 | 4_2:+60422379 | Msa0612040:CDS |
| TGCGTTAATTAAGGAGAAGG+CGG | 0.622535 | 4_2:+60422355 | Msa0612040:CDS |
| ATTTCATCCGACCTCTGATG+TGG | 0.624861 | 4_2:+60423449 | Msa0612040:CDS |
| TGTGTGAATAAAAGAAAGCG+TGG | 0.625451 | 4_2:+60425322 | Msa0612040:CDS |
| AACACACAGGTTGATGTCGT+TGG | 0.629681 | 4_2:+60418422 | None:intergenic |
| AAGAAGAAGAAAGAAAATCG+AGG | 0.633659 | 4_2:+60419156 | Msa0612040:CDS |
| AACAGACTCCACCTTAACGA+CGG | 0.636006 | 4_2:-60422408 | None:intergenic |
| CAAGATATGAGAAAAGAGGA+TGG | 0.638383 | 4_2:-60419210 | None:intergenic |
| TCAGGACCAAAAGTATCATG+AGG | 0.639160 | 4_2:-60422659 | None:intergenic |
| TTGAATACTCAGTTGCATCA+GGG | 0.644316 | 4_2:-60418487 | None:intergenic |
| TATTACAGTGTCATTTCCCG+GGG | 0.646527 | 4_2:+60425532 | Msa0612040:three_prime_UTR |
| TTAGACGCCACATCAGAGGT+CGG | 0.649299 | 4_2:-60423456 | None:intergenic |
| TTGGTCCTGACGTCCCAACA+AGG | 0.655940 | 4_2:+60418621 | Msa0612040:CDS |
| AGTCACAACAGATAGTGGAC+TGG | 0.656168 | 4_2:-60425436 | None:intergenic |
| AAGACGACGAAAGAAAGTTG+AGG | 0.656367 | 4_2:+60423657 | Msa0612040:CDS |
| GTTCTTTGGTGAGAATGGCG+CGG | 0.661080 | 4_2:+60422631 | Msa0612040:CDS |
| GCTCTTTGGTGAGAATGGTG+TGG | 0.671970 | 4_2:+60418580 | Msa0612040:CDS |
| CAGGACCAAATGGATCTCGA+GGG | 0.678613 | 4_2:-60418607 | None:intergenic |
| CAGGACCAAAAGTATCATGA+GGG | 0.684798 | 4_2:-60422658 | None:intergenic |
| AAAGAAAGTTGAGGATACAA+CGG | 0.687206 | 4_2:+60423666 | Msa0612040:CDS |
| CTGGTGACTTGAAAATGGCA+AGG | 0.692316 | 4_2:-60423611 | None:intergenic |
| TCCCACCCAGAAGCTTCAGG+AGG | 0.699328 | 4_2:+60425195 | Msa0612040:CDS |
| TGTGAATAAAAGAAAGCGTG+GGG | 0.699887 | 4_2:+60425324 | Msa0612040:CDS |
| CTGATTATCAGGTTCCCCAG+GGG | 0.702960 | 4_2:-60425383 | None:intergenic |
| ATTGTGAGTTGGACGAACAA+GGG | 0.703347 | 4_2:+60422488 | Msa0612040:CDS |
| AGAACTTGCAGAGTATGACA+AGG | 0.715284 | 4_2:+60423534 | Msa0612040:CDS |
| TCTGATGCATGAACTTCAGG+AGG | 0.750934 | 4_2:+60425147 | Msa0612040:CDS |
| TGACAAGGTAAAGCATACGG+CGG | 0.760192 | 4_2:+60423549 | Msa0612040:CDS |
| TTGGAACATGAAGTCCCCTG+GGG | 0.780983 | 4_2:+60425369 | Msa0612040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATATTATTATTGAC+GGG | - | chr4_2:60421066-60421085 | None:intergenic | 10.0% |
| !! | TTAATTATCACTTAAATAAA+TGG | - | chr4_2:60421528-60421547 | None:intergenic | 10.0% |
| !! | TTATTTAAGTGATAATTAAT+TGG | + | chr4_2:60421529-60421548 | Msa0612040:intron | 10.0% |
| !! | TATTTAAGTGATAATTAATT+GGG | + | chr4_2:60421530-60421549 | Msa0612040:intron | 10.0% |
| !! | TAATTAAATATTTGCATATT+TGG | - | chr4_2:60422709-60422728 | None:intergenic | 10.0% |
| !!! | TTATTTATATTTTTGATACA+TGG | + | chr4_2:60423378-60423397 | Msa0612040:intron | 10.0% |
| !!! | ACAAAATATATTAATTTTCT+TGG | + | chr4_2:60424983-60425002 | Msa0612040:intron | 10.0% |
| !!! | TGAGTTAATTATTGATATTT+TGG | + | chr4_2:60418945-60418964 | Msa0612040:intron | 15.0% |
| !!! | AAAGCTAATGTATTTTTTTT+TGG | + | chr4_2:60420184-60420203 | Msa0612040:intron | 15.0% |
| !!! | ATTTTTCCACAAAAAAAATA+AGG | + | chr4_2:60420649-60420668 | Msa0612040:intron | 15.0% |
| !! | TATAAATTATTTGTGGAATT+TGG | - | chr4_2:60420816-60420835 | None:intergenic | 15.0% |
| !! | AGTTAAGTATAAATTATTTG+TGG | - | chr4_2:60420823-60420842 | None:intergenic | 15.0% |
| !! | ATTTAATATTATTATTGACG+GGG | - | chr4_2:60421065-60421084 | None:intergenic | 15.0% |
| !!! | AATTTGTTAATTGATTGATT+TGG | - | chr4_2:60421225-60421244 | None:intergenic | 15.0% |
| !!! | ATTAACAAATTTTTCTTTGA+TGG | + | chr4_2:60421234-60421253 | Msa0612040:intron | 15.0% |
| !! | TAGATAAATTAATCAATGAA+TGG | + | chr4_2:60421263-60421282 | Msa0612040:intron | 15.0% |
| !!! | ATCATTTTTAACCTTTTTAT+TGG | + | chr4_2:60421423-60421442 | Msa0612040:intron | 15.0% |
| !! | TTTATTAAAATGTGATGATA+TGG | + | chr4_2:60421500-60421519 | Msa0612040:intron | 15.0% |
| !! | AACAGATTAACAAATTAAAA+GGG | - | chr4_2:60422099-60422118 | None:intergenic | 15.0% |
| !! | AAATGTTTAATATTCAATTC+TGG | + | chr4_2:60422158-60422177 | Msa0612040:intron | 15.0% |
| !! | ATGAAAATTAAACATTTCAT+GGG | - | chr4_2:60422198-60422217 | None:intergenic | 15.0% |
| !! | TATGAAAATTAAACATTTCA+TGG | - | chr4_2:60422199-60422218 | None:intergenic | 15.0% |
| !! | AAATATTTAATTATCTTCCT+TGG | + | chr4_2:60422716-60422735 | Msa0612040:intron | 15.0% |
| !! | TAAAAAGGACTCTAATAATA+AGG | - | chr4_2:60418779-60418798 | None:intergenic | 20.0% |
| !!! | CAAATTAATTGACTCTAAAA+AGG | - | chr4_2:60418794-60418813 | None:intergenic | 20.0% |
| !!! | ATTATTGATATTTTGGCATA+TGG | + | chr4_2:60418952-60418971 | Msa0612040:intron | 20.0% |
| !!! | ATTTCTTATTCTCTAAAGTA+GGG | - | chr4_2:60419318-60419337 | None:intergenic | 20.0% |
| !!! | TACTTTAGAGAATAAGAAAT+CGG | + | chr4_2:60419318-60419337 | Msa0612040:intron | 20.0% |
| !!! | TGAAATTTTAGATTTTGAAG+AGG | + | chr4_2:60420249-60420268 | Msa0612040:intron | 20.0% |
| !!! | GTTTTTCCTTATTTTTTTTG+TGG | - | chr4_2:60420658-60420677 | None:intergenic | 20.0% |
| !!! | AATAAGGAAAAACTTCATTT+TGG | + | chr4_2:60420665-60420684 | Msa0612040:intron | 20.0% |
| !! | ATATAATCCATAAATCTCAA+AGG | + | chr4_2:60420691-60420710 | Msa0612040:intron | 20.0% |
| !!! | AGAGTTACAATTGTTTTTTA+GGG | + | chr4_2:60421020-60421039 | Msa0612040:intron | 20.0% |
| !! | AAGGTTAAAAATGATATGAT+AGG | - | chr4_2:60421418-60421437 | None:intergenic | 20.0% |
| !! | GAACAGATTAACAAATTAAA+AGG | - | chr4_2:60422100-60422119 | None:intergenic | 20.0% |
| !! | ATTCAAACCTAATAGTTAAT+AGG | + | chr4_2:60422959-60422978 | Msa0612040:intron | 20.0% |
| !! | AAATATGCCTATTAACTATT+AGG | - | chr4_2:60422969-60422988 | None:intergenic | 20.0% |
| !! | AGAGTTAGAATAAAAACTAT+GGG | - | chr4_2:60423136-60423155 | None:intergenic | 20.0% |
| !! | AAGAGTTAGAATAAAAACTA+TGG | - | chr4_2:60423137-60423156 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTATATGCTCTTT+TGG | + | chr4_2:60424157-60424176 | Msa0612040:intron | 20.0% |
| !! | GAATCGAAATAAATCATATT+TGG | - | chr4_2:60424752-60424771 | None:intergenic | 20.0% |
| !! | CTTAAAACAACAACTAAAAA+GGG | + | chr4_2:60425020-60425039 | Msa0612040:intron | 20.0% |
| !! | TTTAAATAAGATGTCAACTT+GGG | - | chr4_2:60425491-60425510 | None:intergenic | 20.0% |
| !! | TAATTTTGTATTACCTTGCT+TGG | + | chr4_2:60418665-60418684 | Msa0612040:intron | 25.0% |
| ! | CAACGATCAATATATGAAAA+AGG | + | chr4_2:60418696-60418715 | Msa0612040:intron | 25.0% |
| !! | ATCAATTGATGATTAGCATA+AGG | - | chr4_2:60418822-60418841 | None:intergenic | 25.0% |
| ! | TTATGCTAATCATCAATTGA+TGG | + | chr4_2:60418821-60418840 | Msa0612040:intron | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | + | chr4_2:60418859-60418878 | Msa0612040:intron | 25.0% |
| ! | TGGATTTCATGTATAAATGT+AGG | + | chr4_2:60418972-60418991 | Msa0612040:intron | 25.0% |
| !!! | TCTTGGTAAAAACCTTTTTT+TGG | + | chr4_2:60419228-60419247 | Msa0612040:intron | 25.0% |
| ! | GATAAATGAATGCCAAAAAA+AGG | - | chr4_2:60419243-60419262 | None:intergenic | 25.0% |
| !!! | GATTTCTTATTCTCTAAAGT+AGG | - | chr4_2:60419319-60419338 | None:intergenic | 25.0% |
| ! | ATTTCGTACAAAATTGCTAT+TGG | - | chr4_2:60419737-60419756 | None:intergenic | 25.0% |
| ! | TCTTATTGTAATGTCATGTT+TGG | + | chr4_2:60419899-60419918 | Msa0612040:intron | 25.0% |
| !! | GGATTTTTGTAGTGAAATTT+CGG | + | chr4_2:60419920-60419939 | Msa0612040:intron | 25.0% |
| ! | AAATTCAGATCTAAATGACT+TGG | + | chr4_2:60419959-60419978 | Msa0612040:intron | 25.0% |
| ! | ATCAAAACACATAATCTTAG+TGG | + | chr4_2:60420015-60420034 | Msa0612040:intron | 25.0% |
| !!! | AAATTCACCAATTCTGAAAT+TGG | - | chr4_2:60420075-60420094 | None:intergenic | 25.0% |
| !!! | GTTTTATTGTGGTTTTTAAC+TGG | - | chr4_2:60420100-60420119 | None:intergenic | 25.0% |
| !!! | TAGCTTTATTTGATTTTTCG+TGG | - | chr4_2:60420171-60420190 | None:intergenic | 25.0% |
| ! | ACAATTCTAACCAACTAATT+CGG | - | chr4_2:60420385-60420404 | None:intergenic | 25.0% |
| !! | CTTTTGACAAAAAAAACCAT+GGG | - | chr4_2:60420499-60420518 | None:intergenic | 25.0% |
| !! | TCTTTTGACAAAAAAAACCA+TGG | - | chr4_2:60420500-60420519 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTTTGTCAAAAGA+TGG | + | chr4_2:60420500-60420519 | Msa0612040:intron | 25.0% |
| !!! | TTTTGAGGCATCTATATATA+GGG | - | chr4_2:60420561-60420580 | None:intergenic | 25.0% |
| !!! | ATTTTGAGGCATCTATATAT+AGG | - | chr4_2:60420562-60420581 | None:intergenic | 25.0% |
| ! | ATATATAGATGCCTCAAAAT+AGG | + | chr4_2:60420562-60420581 | Msa0612040:intron | 25.0% |
| ! | TATATAGATGCCTCAAAATA+GGG | + | chr4_2:60420563-60420582 | Msa0612040:intron | 25.0% |
| !!! | AATAAACTCCCTTTTTTGTT+TGG | + | chr4_2:60420761-60420780 | Msa0612040:intron | 25.0% |
| !!! | TTTTGAAGCCAAACAAAAAA+GGG | - | chr4_2:60420772-60420791 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGCCAAACAAAAA+AGG | - | chr4_2:60420773-60420792 | None:intergenic | 25.0% |
| !!! | CAGAGTTACAATTGTTTTTT+AGG | + | chr4_2:60421019-60421038 | Msa0612040:intron | 25.0% |
| !!! | TAATCAATGAATGGATTAGA+TGG | + | chr4_2:60421272-60421291 | Msa0612040:intron | 25.0% |
| ! | ACAAAATAACAAATGAGAGT+CGG | + | chr4_2:60421365-60421384 | Msa0612040:intron | 25.0% |
| ! | TCATATCTCAACCAATAAAA+AGG | - | chr4_2:60421437-60421456 | None:intergenic | 25.0% |
| !!! | TTGCTTGGTTTTTACATAAT+TGG | + | chr4_2:60421879-60421898 | Msa0612040:intron | 25.0% |
| !!! | TGCTTGGTTTTTACATAATT+GGG | + | chr4_2:60421880-60421899 | Msa0612040:intron | 25.0% |
| ! | AACTGAATTGTGAAATAGAT+TGG | - | chr4_2:60422072-60422091 | None:intergenic | 25.0% |
| !!! | TATGCATTTTGATTTTGAAC+AGG | + | chr4_2:60422309-60422328 | Msa0612040:intron | 25.0% |
| !! | TTTTGAACAGGTAAACTAAA+AGG | + | chr4_2:60422321-60422340 | Msa0612040:intron | 25.0% |
| ! | TTTGAACAGGTAAACTAAAA+GGG | + | chr4_2:60422322-60422341 | Msa0612040:intron | 25.0% |
| !!! | GACTTTTATTTTACTGCATA+TGG | - | chr4_2:60422834-60422853 | None:intergenic | 25.0% |
| !! | CGAATTAATTGACTCTAAAA+AGG | - | chr4_2:60423229-60423248 | None:intergenic | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | + | chr4_2:60418859-60418878 | Msa0612040:intron | 25.0% |
| !!! | AATTTGCTTGAGTCTTATTT+CGG | - | chr4_2:60423488-60423507 | None:intergenic | 25.0% |
| ! | TTATTCTCTACAGTAAGTAA+AGG | - | chr4_2:60423847-60423866 | None:intergenic | 25.0% |
| ! | TCTTTCACTTTATTAACCTT+TGG | + | chr4_2:60424064-60424083 | Msa0612040:intron | 25.0% |
| ! | GATTACTAGGCAAAATTAAA+GGG | - | chr4_2:60424102-60424121 | None:intergenic | 25.0% |
| ! | TGATTACTAGGCAAAATTAA+AGG | - | chr4_2:60424103-60424122 | None:intergenic | 25.0% |
| ! | TACATCAAAATGTGATTACT+AGG | - | chr4_2:60424115-60424134 | None:intergenic | 25.0% |
| ! | AGCATATAAAAAAACTGTCA+TGG | - | chr4_2:60424153-60424172 | None:intergenic | 25.0% |
| ! | ACATTGAAAATCTACAATGT+AGG | + | chr4_2:60424284-60424303 | Msa0612040:CDS | 25.0% |
| ! | CATTGAAAATCTACAATGTA+GGG | + | chr4_2:60424285-60424304 | Msa0612040:CDS | 25.0% |
| !!! | AATTTTAGCCTTATTCTTCA+TGG | + | chr4_2:60424376-60424395 | Msa0612040:CDS | 25.0% |
| ! | TCGAAATAAATCATATTTGG+TGG | - | chr4_2:60424749-60424768 | None:intergenic | 25.0% |
| ! | TATTTCGATTCCATATTGAT+AGG | + | chr4_2:60424761-60424780 | Msa0612040:intron | 25.0% |
| ! | CTAACAAATACCTATCAATA+TGG | - | chr4_2:60424774-60424793 | None:intergenic | 25.0% |
| ! | CATATTGATAGGTATTTGTT+AGG | + | chr4_2:60424772-60424791 | Msa0612040:intron | 25.0% |
| ! | TACAAAAGCGACAATTAAAA+AGG | - | chr4_2:60424800-60424819 | None:intergenic | 25.0% |
| !!! | CCTTTTTAGTTGTTGTTTTA+AGG | - | chr4_2:60425022-60425041 | None:intergenic | 25.0% |
| ! | CCTTAAAACAACAACTAAAA+AGG | + | chr4_2:60425019-60425038 | Msa0612040:intron | 25.0% |
| ! | TTAAATAAGATGTCAACTTG+GGG | - | chr4_2:60425490-60425509 | None:intergenic | 25.0% |
| ! | GTTTAAATAAGATGTCAACT+TGG | - | chr4_2:60425492-60425511 | None:intergenic | 25.0% |
| ! | CAATTGAAAATGAAGACATA+GGG | - | chr4_2:60425609-60425628 | None:intergenic | 25.0% |
| ! | TCAATTGAAAATGAAGACAT+AGG | - | chr4_2:60425610-60425629 | None:intergenic | 25.0% |
| !! | TTTTCAATTGATCAGTATAC+CGG | + | chr4_2:60425619-60425638 | Msa0612040:three_prime_UTR | 25.0% |
| TGATGCATCTAATGAAATTG+AGG | + | chr4_2:60418463-60418482 | Msa0612040:CDS | 30.0% | |
| TGAGTAAAAATCACCTTGTT+GGG | - | chr4_2:60418637-60418656 | None:intergenic | 30.0% | |
| TTGAGTAAAAATCACCTTGT+TGG | - | chr4_2:60418638-60418657 | None:intergenic | 30.0% | |
| ! | TCAACATTTTCATAAGACCA+GGG | - | chr4_2:60418723-60418742 | None:intergenic | 30.0% |
| CACAATCTAACTAGATATAG+TGG | - | chr4_2:60418854-60418873 | None:intergenic | 30.0% | |
| TCATGTATAAATGTAGGAAG+AGG | + | chr4_2:60418978-60418997 | Msa0612040:intron | 30.0% | |
| AAGAAGAAGAAAGAAAATCG+AGG | + | chr4_2:60419156-60419175 | Msa0612040:CDS | 30.0% | |
| TTACCAAGATATGAGAAAAG+AGG | - | chr4_2:60419217-60419236 | None:intergenic | 30.0% | |
| !! | TAAGCAGTTGGTAAACAATA+AGG | - | chr4_2:60419294-60419313 | None:intergenic | 30.0% |
| AATAAGAAATCGGATGTTGA+TGG | + | chr4_2:60419328-60419347 | Msa0612040:CDS | 30.0% | |
| ! | ATGTTACTTGTTTGTTTGTG+TGG | + | chr4_2:60419423-60419442 | Msa0612040:intron | 30.0% |
| !! | TGAATCTTCATTTAGCTCTT+TGG | - | chr4_2:60419509-60419528 | None:intergenic | 30.0% |
| GCATTAACGATCTACTATAT+AGG | + | chr4_2:60419605-60419624 | Msa0612040:CDS | 30.0% | |
| !!! | TGTTTCACTTGGTTTTATTG+TGG | - | chr4_2:60420111-60420130 | None:intergenic | 30.0% |
| ! | AGATTTTGTCATGTTTCACT+TGG | - | chr4_2:60420122-60420141 | None:intergenic | 30.0% |
| TCATAAGAAGTCAAGTGTAA+GGG | + | chr4_2:60420276-60420295 | Msa0612040:intron | 30.0% | |
| ! | ATTTGAACTTCTTTTTCCCA+TGG | + | chr4_2:60420480-60420499 | Msa0612040:intron | 30.0% |
| TTGTCAAAAGATGGTGTATA+TGG | + | chr4_2:60420509-60420528 | Msa0612040:intron | 30.0% | |
| TGTCAAAAGATGGTGTATAT+GGG | + | chr4_2:60420510-60420529 | Msa0612040:intron | 30.0% | |
| ! | TTTGAGGCATCTATATATAG+GGG | - | chr4_2:60420560-60420579 | None:intergenic | 30.0% |
| AAGTACTTATAAATCCGAGT+TGG | + | chr4_2:60420616-60420635 | Msa0612040:intron | 30.0% | |
| ! | AAATGCATTTTTCACCAACT+CGG | - | chr4_2:60420633-60420652 | None:intergenic | 30.0% |
| ACACACACATATACACTAAA+AGG | + | chr4_2:60420905-60420924 | Msa0612040:intron | 30.0% | |
| TGATAATTAATTGGGTGACT+AGG | + | chr4_2:60421538-60421557 | Msa0612040:intron | 30.0% | |
| AAGATGATTACATTGAAGAG+AGG | - | chr4_2:60421761-60421780 | None:intergenic | 30.0% | |
| TAACTTACCTCAATTCACAT+TGG | + | chr4_2:60421780-60421799 | Msa0612040:intron | 30.0% | |
| TTGAACAGGTAAACTAAAAG+GGG | + | chr4_2:60422323-60422342 | Msa0612040:intron | 30.0% | |
| TCCTTAATTAACGCAAACTT+TGG | - | chr4_2:60422350-60422369 | None:intergenic | 30.0% | |
| TCTGTTCTTGATGAACAAAT+TGG | + | chr4_2:60422425-60422444 | Msa0612040:CDS | 30.0% | |
| TAACATATTGACCTCTAACT+GGG | - | chr4_2:60422871-60422890 | None:intergenic | 30.0% | |
| TTAACATATTGACCTCTAAC+TGG | - | chr4_2:60422872-60422891 | None:intergenic | 30.0% | |
| TGATGCTTCAGTAAGAAATT+AGG | + | chr4_2:60423040-60423059 | Msa0612040:intron | 30.0% | |
| ATCAAAGCATGCAATATCTA+AGG | - | chr4_2:60423082-60423101 | None:intergenic | 30.0% | |
| CACAATCTAACTAGATATAG+TGG | - | chr4_2:60418854-60418873 | None:intergenic | 30.0% | |
| TTATGGTGAAGCAAAATTCT+TGG | + | chr4_2:60423311-60423330 | Msa0612040:intron | 30.0% | |
| TGGATTTCCTGTATTAATGT+AGG | + | chr4_2:60423398-60423417 | Msa0612040:intron | 30.0% | |
| ! | CATTTTACCTTAAAAGAGTC+TGG | + | chr4_2:60423580-60423599 | Msa0612040:CDS | 30.0% |
| AAAGAAAGTTGAGGATACAA+CGG | + | chr4_2:60423666-60423685 | Msa0612040:CDS | 30.0% | |
| !!! | CACTATCTTTTTTCCTATCT+CGG | + | chr4_2:60423712-60423731 | Msa0612040:CDS | 30.0% |
| TTCACATACTTCTCTGAATT+GGG | - | chr4_2:60423816-60423835 | None:intergenic | 30.0% | |
| ATTCACATACTTCTCTGAAT+TGG | - | chr4_2:60423817-60423836 | None:intergenic | 30.0% | |
| TCTTTCATTGAGAGAAAATG+AGG | + | chr4_2:60423983-60424002 | Msa0612040:intron | 30.0% | |
| ! | TTTTCTGTTGAATCAACATG+TGG | - | chr4_2:60424199-60424218 | None:intergenic | 30.0% |
| ! | GTAGATTTTCAATGTTCTGA+AGG | - | chr4_2:60424279-60424298 | None:intergenic | 30.0% |
| CTCAATTATATCAGGAATAC+TGG | - | chr4_2:60424572-60424591 | None:intergenic | 30.0% | |
| !! | ATGTGAGTTTTCTAAAAGTG+TGG | + | chr4_2:60424662-60424681 | Msa0612040:intron | 30.0% |
| TTCTAGTCATAAACTGGAAT+TGG | - | chr4_2:60424708-60424727 | None:intergenic | 30.0% | |
| !! | TTCTAGTTCTAGTCATAAAC+TGG | - | chr4_2:60424714-60424733 | None:intergenic | 30.0% |
| TCGTTGCAATAAATAGTGAA+GGG | - | chr4_2:60424895-60424914 | None:intergenic | 30.0% | |
| CTATTTATTGCAACGAGAAA+AGG | + | chr4_2:60424899-60424918 | Msa0612040:intron | 30.0% | |
| !! | AGTCTTATTCACTGATTATC+AGG | - | chr4_2:60425397-60425416 | None:intergenic | 30.0% |
| TCAGTACTAAGCTAAAAAAC+CGG | - | chr4_2:60425641-60425660 | None:intergenic | 30.0% | |
| !! | AGATATTCTGAAAGCTTTTC+TGG | + | chr4_2:60425689-60425708 | Msa0612040:three_prime_UTR | 30.0% |
| ! | GACATCTTCCTCTTTTTAAT+TGG | + | chr4_2:60425755-60425774 | Msa0612040:three_prime_UTR | 30.0% |
| CACTTCATCCAATTAAAAAG+AGG | - | chr4_2:60425766-60425785 | None:intergenic | 30.0% | |
| TTGAATACTCAGTTGCATCA+GGG | - | chr4_2:60418490-60418509 | None:intergenic | 35.0% | |
| CAATATATGAAAAAGGACCC+TGG | + | chr4_2:60418703-60418722 | Msa0612040:intron | 35.0% | |
| ! | CTCAACATTTTCATAAGACC+AGG | - | chr4_2:60418724-60418743 | None:intergenic | 35.0% |
| TGCTAATCATCAATTGATGG+TGG | + | chr4_2:60418824-60418843 | Msa0612040:intron | 35.0% | |
| GTATAAATGTAGGAAGAGGA+AGG | + | chr4_2:60418982-60419001 | Msa0612040:intron | 35.0% | |
| TCTTCTTCTTCTTCTTACTC+TGG | - | chr4_2:60419146-60419165 | None:intergenic | 35.0% | |
| CAAGATATGAGAAAAGAGGA+TGG | - | chr4_2:60419213-60419232 | None:intergenic | 35.0% | |
| ! | CATCCTCTTTTCTCATATCT+TGG | + | chr4_2:60419211-60419230 | Msa0612040:CDS | 35.0% |
| !! | GATGAAGATTTTGACAATCC+AGG | + | chr4_2:60419358-60419377 | Msa0612040:CDS | 35.0% |
| CTTCAACAGAATTTCTAACC+TGG | - | chr4_2:60419379-60419398 | None:intergenic | 35.0% | |
| ATCTACTATATAGGATCGAC+AGG | + | chr4_2:60419614-60419633 | Msa0612040:CDS | 35.0% | |
| !! | AAGATGTCATCGATTCAATC+AGG | + | chr4_2:60419641-60419660 | Msa0612040:CDS | 35.0% |
| ACTTGAGGTTGAATCATATG+TGG | - | chr4_2:60419668-60419687 | None:intergenic | 35.0% | |
| TATGATTCAACCTCAAGTGT+TGG | + | chr4_2:60419670-60419689 | Msa0612040:intron | 35.0% | |
| ATGTAATCCTTCGTAGAAGA+TGG | + | chr4_2:60419867-60419886 | Msa0612040:intron | 35.0% | |
| TGTAATCCTTCGTAGAAGAT+GGG | + | chr4_2:60419868-60419887 | Msa0612040:intron | 35.0% | |
| ACCTCTTCCAATTTCAGAAT+TGG | + | chr4_2:60420065-60420084 | Msa0612040:intron | 35.0% | |
| !! | ACCAATTCTGAAATTGGAAG+AGG | - | chr4_2:60420069-60420088 | None:intergenic | 35.0% |
| CTCATAAGAAGTCAAGTGTA+AGG | + | chr4_2:60420275-60420294 | Msa0612040:intron | 35.0% | |
| AGACTGAACTTGATTGTGAT+AGG | - | chr4_2:60420433-60420452 | None:intergenic | 35.0% | |
| CCTCAAAATAGGGTGTATAA+GGG | + | chr4_2:60420573-60420592 | Msa0612040:intron | 35.0% | |
| CACACATATACACTAAAAGG+TGG | + | chr4_2:60420908-60420927 | Msa0612040:intron | 35.0% | |
| ACATATACACTAAAAGGTGG+CGG | + | chr4_2:60420911-60420930 | Msa0612040:intron | 35.0% | |
| !! | CAATGAATGGATTAGATGGA+CGG | + | chr4_2:60421276-60421295 | Msa0612040:intron | 35.0% |
| TCAAATTGTCACCTGACTTA+CGG | + | chr4_2:60421303-60421322 | Msa0612040:intron | 35.0% | |
| TAGGTTTAATGTAGTGTCCT+GGG | - | chr4_2:60421399-60421418 | None:intergenic | 35.0% | |
| ATAGGTTTAATGTAGTGTCC+TGG | - | chr4_2:60421400-60421419 | None:intergenic | 35.0% | |
| ACAGACAGAAACACTAAACT+AGG | + | chr4_2:60421616-60421635 | Msa0612040:intron | 35.0% | |
| ! | GTTGTTAGCTAAGTTTTGCT+TGG | + | chr4_2:60421864-60421883 | Msa0612040:intron | 35.0% |
| !! | AATCTGTTCTGCTTTTGCAA+TGG | + | chr4_2:60422111-60422130 | Msa0612040:intron | 35.0% |
| TGAACAGGTAAACTAAAAGG+GGG | + | chr4_2:60422324-60422343 | Msa0612040:intron | 35.0% | |
| GCCAAAGTTTGCGTTAATTA+AGG | + | chr4_2:60422346-60422365 | Msa0612040:CDS | 35.0% | |
| GTTTGCGTTAATTAAGGAGA+AGG | + | chr4_2:60422352-60422371 | Msa0612040:CDS | 35.0% | |
| AGAGAAAGGTTTAAGAGACA+TGG | + | chr4_2:60422379-60422398 | Msa0612040:CDS | 35.0% | |
| CAGATGTTGATATTGTGAGT+TGG | + | chr4_2:60422477-60422496 | Msa0612040:CDS | 35.0% | |
| TCGAATATTCAGTTGCATCA+GGG | - | chr4_2:60422541-60422560 | None:intergenic | 35.0% | |
| GGAATTAAAGTCACCTTGTT+CGG | - | chr4_2:60422688-60422707 | None:intergenic | 35.0% | |
| !! | GTCCTTTTTCATATACTGGT+CGG | - | chr4_2:60422756-60422775 | None:intergenic | 35.0% |
| ! | TCAACATTTTCAGAAGACCA+GGG | - | chr4_2:60422778-60422797 | None:intergenic | 35.0% |
| AACATATTGACCTCTAACTG+GGG | - | chr4_2:60422870-60422889 | None:intergenic | 35.0% | |
| AGCTAGTTGAAAAGTGAGTA+AGG | + | chr4_2:60422905-60422924 | Msa0612040:intron | 35.0% | |
| TTTCACATGTCATATACAGC+TGG | - | chr4_2:60423012-60423031 | None:intergenic | 35.0% | |
| ATCAATTGACGATTAGCACA+AGG | - | chr4_2:60423257-60423276 | None:intergenic | 35.0% | |
| TTGTGCTAATCGTCAATTGA+TGG | + | chr4_2:60423256-60423275 | Msa0612040:intron | 35.0% | |
| TCCTGTATTAATGTAGGAAG+AGG | + | chr4_2:60423404-60423423 | Msa0612040:intron | 35.0% | |
| TCCTCTTCCTACATTAATAC+AGG | - | chr4_2:60423408-60423427 | None:intergenic | 35.0% | |
| GTATGACAAGGTAAAGCATA+CGG | + | chr4_2:60423546-60423565 | Msa0612040:CDS | 35.0% | |
| ! | TTTCGAACCAGACTCTTTTA+AGG | - | chr4_2:60423590-60423609 | None:intergenic | 35.0% |
| AAAAAAGCTCATACCGAGAT+AGG | - | chr4_2:60423728-60423747 | None:intergenic | 35.0% | |
| TCACATACTTCTCTGAATTG+GGG | - | chr4_2:60423815-60423834 | None:intergenic | 35.0% | |
| AATAAGAAGTCTGATGCTGA+TGG | + | chr4_2:60423862-60423881 | Msa0612040:CDS | 35.0% | |
| !! | GGATGATGATTTTGACAATC+CGG | + | chr4_2:60423891-60423910 | Msa0612040:CDS | 35.0% |
| !! | GATGATGATTTTGACAATCC+GGG | + | chr4_2:60423892-60423911 | Msa0612040:CDS | 35.0% |
| TTAGCATATCATTAGCAGCA+AGG | - | chr4_2:60423925-60423944 | None:intergenic | 35.0% | |
| !! | ATTTTAACAGCACTAGTGAG+TGG | - | chr4_2:60423952-60423971 | None:intergenic | 35.0% |
| TTCATTGAGAGAAAATGAGG+AGG | + | chr4_2:60423986-60424005 | Msa0612040:intron | 35.0% | |
| ATTCAACTGCATTACGTTTC+TGG | + | chr4_2:60424023-60424042 | Msa0612040:intron | 35.0% | |
| AGAAAACCTCGAAACATTTC+TGG | - | chr4_2:60424347-60424366 | None:intergenic | 35.0% | |
| AAAGTCCTACAAATTCTGCT+GGG | + | chr4_2:60424422-60424441 | Msa0612040:CDS | 35.0% | |
| ACAGTGCTCTCAATTATATC+AGG | - | chr4_2:60424580-60424599 | None:intergenic | 35.0% | |
| !! | GATATAATTGAGAGCACTGT+TGG | + | chr4_2:60424580-60424599 | Msa0612040:CDS | 35.0% |
| CTCGTTGCAATAAATAGTGA+AGG | - | chr4_2:60424896-60424915 | None:intergenic | 35.0% | |
| AAGACAAAACTTCTTACGAC+TGG | + | chr4_2:60425058-60425077 | Msa0612040:intron | 35.0% | |
| ! | ACGCTTTCTTTTATTCACAC+AGG | - | chr4_2:60425323-60425342 | None:intergenic | 35.0% |
| TGTGTGAATAAAAGAAAGCG+TGG | + | chr4_2:60425322-60425341 | Msa0612040:CDS | 35.0% | |
| ! | GTGTGAATAAAAGAAAGCGT+GGG | + | chr4_2:60425323-60425342 | Msa0612040:CDS | 35.0% |
| ! | TGTGAATAAAAGAAAGCGTG+GGG | + | chr4_2:60425324-60425343 | Msa0612040:CDS | 35.0% |
| !! | AGTATTACAGTGTCATTTCC+CGG | + | chr4_2:60425530-60425549 | Msa0612040:three_prime_UTR | 35.0% |
| TATCTCTTGCATGTTACAAG+AGG | - | chr4_2:60425674-60425693 | None:intergenic | 35.0% | |
| ! | CAAAAAACTTGTTTCGTACG+AGG | - | chr4_2:60425736-60425755 | None:intergenic | 35.0% |
| CTTGAATACTCAGTTGCATC+AGG | - | chr4_2:60418491-60418510 | None:intergenic | 40.0% | |
| ACTACCTCTGATGCTGAAAA+TGG | + | chr4_2:60418524-60418543 | Msa0612040:CDS | 40.0% | |
| ! | TGAACCATTTTCAGCATCAG+AGG | - | chr4_2:60418531-60418550 | None:intergenic | 40.0% |
| TCTAAGCTCTTTGGTGAGAA+TGG | + | chr4_2:60418575-60418594 | Msa0612040:CDS | 40.0% | |
| !! | CGTTGATAATTGTCCAAGCA+AGG | - | chr4_2:60418681-60418700 | None:intergenic | 40.0% |
| ! | AGAGCTCAAAAAGTGTGACA+TGG | + | chr4_2:60419108-60419127 | Msa0612040:CDS | 40.0% |
| GTGTGACATGGAAACACATA+AGG | + | chr4_2:60419120-60419139 | Msa0612040:CDS | 40.0% | |
| CTAAAGTAGGGATAAGCAGT+TGG | - | chr4_2:60419306-60419325 | None:intergenic | 40.0% | |
| AAGATGTACCTGTGCTTGAA+TGG | + | chr4_2:60419545-60419564 | Msa0612040:CDS | 40.0% | |
| TGATGTCAGAGATAGAACAC+AGG | - | chr4_2:60419999-60420018 | None:intergenic | 40.0% | |
| ACTCGAAACACCGAATTAGT+TGG | + | chr4_2:60420372-60420391 | Msa0612040:intron | 40.0% | |
| GCCTCAAAATAGGGTGTATA+AGG | + | chr4_2:60420572-60420591 | Msa0612040:intron | 40.0% | |
| ! | CCCTTATACACCCTATTTTG+AGG | - | chr4_2:60420576-60420595 | None:intergenic | 40.0% |
| GACGATGTTTCAACGTTTCA+AGG | + | chr4_2:60420959-60420978 | Msa0612040:intron | 40.0% | |
| GATGTTTCAACGTTTCAAGG+TGG | + | chr4_2:60420962-60420981 | Msa0612040:intron | 40.0% | |
| !! | TATTGGAAGAGAGAGTACCT+GGG | - | chr4_2:60421718-60421737 | None:intergenic | 40.0% |
| CAGCATTCCAATGTGAATTG+AGG | - | chr4_2:60421790-60421809 | None:intergenic | 40.0% | |
| TGCGTTAATTAAGGAGAAGG+CGG | + | chr4_2:60422355-60422374 | Msa0612040:CDS | 40.0% | |
| ! | TATTGTGAGTTGGACGAACA+AGG | + | chr4_2:60422487-60422506 | Msa0612040:CDS | 40.0% |
| ! | ATTGTGAGTTGGACGAACAA+GGG | + | chr4_2:60422488-60422507 | Msa0612040:CDS | 40.0% |
| TGTTGGATCTACCAAAAACG+AGG | + | chr4_2:60422514-60422533 | Msa0612040:CDS | 40.0% | |
| CTCGAATATTCAGTTGCATC+AGG | - | chr4_2:60422542-60422561 | None:intergenic | 40.0% | |
| ATCAGAGTCTGTATCAGCAA+AGG | - | chr4_2:60422567-60422586 | None:intergenic | 40.0% | |
| ! | GAAGTGGATTCAGAGTTCTT+TGG | + | chr4_2:60422617-60422636 | Msa0612040:CDS | 40.0% |
| TCAGAGTTCTTTGGTGAGAA+TGG | + | chr4_2:60422626-60422645 | Msa0612040:CDS | 40.0% | |
| !! | CAGGACCAAAAGTATCATGA+GGG | - | chr4_2:60422661-60422680 | None:intergenic | 40.0% |
| !! | TCAGGACCAAAAGTATCATG+AGG | - | chr4_2:60422662-60422681 | None:intergenic | 40.0% |
| GACCGACCAGTATATGAAAA+AGG | + | chr4_2:60422751-60422770 | Msa0612040:intron | 40.0% | |
| !! | CAGGGTCCTTTTTCATATAC+TGG | - | chr4_2:60422760-60422779 | None:intergenic | 40.0% |
| CAGTATATGAAAAAGGACCC+TGG | + | chr4_2:60422758-60422777 | Msa0612040:intron | 40.0% | |
| ! | CTCAACATTTTCAGAAGACC+AGG | - | chr4_2:60422779-60422798 | None:intergenic | 40.0% |
| TAACTGGGGACTCTTATCTA+AGG | - | chr4_2:60422856-60422875 | None:intergenic | 40.0% | |
| AACTATGGGTGATGAACAGT+TGG | - | chr4_2:60423122-60423141 | None:intergenic | 40.0% | |
| ATGAATGAACACGCAAAGAG+CGG | - | chr4_2:60423197-60423216 | None:intergenic | 40.0% | |
| TGCTAATCGTCAATTGATGG+CGG | + | chr4_2:60423259-60423278 | Msa0612040:intron | 40.0% | |
| AGAACTTGCAGAGTATGACA+AGG | + | chr4_2:60423534-60423553 | Msa0612040:CDS | 40.0% | |
| ! | CTGTACTGGTGACTTGAAAA+TGG | - | chr4_2:60423619-60423638 | None:intergenic | 40.0% |
| AAGTCACCAGTACAGAAGTA+AGG | + | chr4_2:60423624-60423643 | Msa0612040:CDS | 40.0% | |
| ! | TTTTCGCCTTACTTCTGTAC+TGG | - | chr4_2:60423633-60423652 | None:intergenic | 40.0% |
| AAGACGACGAAAGAAAGTTG+AGG | + | chr4_2:60423657-60423676 | Msa0612040:CDS | 40.0% | |
| !! | GCAAGCAGTTGGTAACAATA+AGG | - | chr4_2:60423792-60423811 | None:intergenic | 40.0% |
| CACATACTTCTCTGAATTGG+GGG | - | chr4_2:60423814-60423833 | None:intergenic | 40.0% | |
| GCACATCACCATGAAGAATA+AGG | - | chr4_2:60424387-60424406 | None:intergenic | 40.0% | |
| CAAAGTCCTACAAATTCTGC+TGG | + | chr4_2:60424421-60424440 | Msa0612040:CDS | 40.0% | |
| ACAAAACTTCTTACGACTGG+TGG | + | chr4_2:60425061-60425080 | Msa0612040:intron | 40.0% | |
| !! | TGACATTGATGATGCACAGA+TGG | + | chr4_2:60425114-60425133 | Msa0612040:intron | 40.0% |
| TGTTCTGATGCATGAACTTC+AGG | + | chr4_2:60425144-60425163 | Msa0612040:CDS | 40.0% | |
| TGAACTTCAGGAGGTGAAAA+TGG | + | chr4_2:60425156-60425175 | Msa0612040:CDS | 40.0% | |
| GTTACAGTCACAACAGATAG+TGG | - | chr4_2:60425444-60425463 | None:intergenic | 40.0% | |
| !! | GTATTACAGTGTCATTTCCC+GGG | + | chr4_2:60425531-60425550 | Msa0612040:three_prime_UTR | 40.0% |
| !! | TATTACAGTGTCATTTCCCG+GGG | + | chr4_2:60425532-60425551 | Msa0612040:three_prime_UTR | 40.0% |
| AAAGTATAGTTCCTCTTCCC+CGG | - | chr4_2:60425552-60425571 | None:intergenic | 40.0% | |
| ! | TGTCGTTGGCTGGAAAAACA+AGG | + | chr4_2:60418436-60418455 | Msa0612040:CDS | 45.0% |
| GAAGTGCAGTCTAAGCTCTT+TGG | + | chr4_2:60418566-60418585 | Msa0612040:CDS | 45.0% | |
| AGAGGAAGGTGACTGATGAT+TGG | + | chr4_2:60418996-60419015 | Msa0612040:CDS | 45.0% | |
| ACTTCATTCGACCTCTTTCG+TGG | + | chr4_2:60419023-60419042 | Msa0612040:CDS | 45.0% | |
| CATTTCAAACGCCACGAAAG+AGG | - | chr4_2:60419037-60419056 | None:intergenic | 45.0% | |
| CTCTTTCGTGGCGTTTGAAA+TGG | + | chr4_2:60419035-60419054 | Msa0612040:CDS | 45.0% | |
| !! | ATCGGATGTTGATGGCTCTT+CGG | + | chr4_2:60419336-60419355 | Msa0612040:CDS | 45.0% |
| GTATCAGTCCATTCAAGCAC+AGG | - | chr4_2:60419556-60419575 | None:intergenic | 45.0% | |
| AGTAGCTTCTCCAACACTTG+AGG | - | chr4_2:60419683-60419702 | None:intergenic | 45.0% | |
| !! | CGAAGCGCCTTTGAGATTTA+TGG | - | chr4_2:60420701-60420720 | None:intergenic | 45.0% |
| !! | CAAAGGCGCTTCGAGAATAT+TGG | + | chr4_2:60420708-60420727 | Msa0612040:intron | 45.0% |
| TGTGTGAGAAGAGAGATTGG+TGG | + | chr4_2:60420735-60420754 | Msa0612040:intron | 45.0% | |
| GAAACGTTGAAACATCGTCG+TGG | - | chr4_2:60420958-60420977 | None:intergenic | 45.0% | |
| TGGTTGACGACAGATCATGA+CGG | + | chr4_2:60420982-60421001 | Msa0612040:intron | 45.0% | |
| !! | TGAATGGATTAGATGGACGG+TGG | + | chr4_2:60421279-60421298 | Msa0612040:intron | 45.0% |
| TGCTCATGTTTCCGTAAGTC+AGG | - | chr4_2:60421317-60421336 | None:intergenic | 45.0% | |
| ! | GGAGTGAGATGATGGTATAG+CGG | - | chr4_2:60421696-60421715 | None:intergenic | 45.0% |
| !! | ATTGGAAGAGAGAGTACCTG+GGG | - | chr4_2:60421717-60421736 | None:intergenic | 45.0% |
| !! | GTATTGGAAGAGAGAGTACC+TGG | - | chr4_2:60421719-60421738 | None:intergenic | 45.0% |
| ATGAACGTGCGTGCATGTAT+TGG | - | chr4_2:60421735-60421754 | None:intergenic | 45.0% | |
| AACAGACTCCACCTTAACGA+CGG | - | chr4_2:60422411-60422430 | None:intergenic | 45.0% | |
| AAGATCAAGTGACGCTGAAG+TGG | + | chr4_2:60422601-60422620 | Msa0612040:CDS | 45.0% | |
| ! | GCAAGCCCTCATGATACTTT+TGG | + | chr4_2:60422653-60422672 | Msa0612040:CDS | 45.0% |
| AGATAAGAGTCCCCAGTTAG+AGG | + | chr4_2:60422857-60422876 | Msa0612040:intron | 45.0% | |
| ATTTCATCCGACCTCTGATG+TGG | + | chr4_2:60423449-60423468 | Msa0612040:CDS | 45.0% | |
| ! | CATTTTAGACGCCACATCAG+AGG | - | chr4_2:60423463-60423482 | None:intergenic | 45.0% |
| CTCTGATGTGGCGTCTAAAA+TGG | + | chr4_2:60423461-60423480 | Msa0612040:CDS | 45.0% | |
| TGACAAGGTAAAGCATACGG+CGG | + | chr4_2:60423549-60423568 | Msa0612040:CDS | 45.0% | |
| CTGGTGACTTGAAAATGGCA+AGG | - | chr4_2:60423614-60423633 | None:intergenic | 45.0% | |
| TAGCAGCAAGGATACTAACC+CGG | - | chr4_2:60423913-60423932 | None:intergenic | 45.0% | |
| GTGTCAGTGCATTTGAGCAA+AGG | - | chr4_2:60424235-60424254 | None:intergenic | 45.0% | |
| !!! | TGATGCCACTTTTCAGTGTG+CGG | - | chr4_2:60424312-60424331 | None:intergenic | 45.0% |
| TCACGTCCAGAAATGTTTCG+AGG | + | chr4_2:60424338-60424357 | Msa0612040:CDS | 45.0% | |
| CCATTCCCAGCAGAATTTGT+AGG | - | chr4_2:60424430-60424449 | None:intergenic | 45.0% | |
| CCTACAAATTCTGCTGGGAA+TGG | + | chr4_2:60424427-60424446 | Msa0612040:CDS | 45.0% | |
| TTCTGCTGGGAATGGATACA+CGG | + | chr4_2:60424435-60424454 | Msa0612040:CDS | 45.0% | |
| AATGGATACACGGCATCTGT+TGG | + | chr4_2:60424445-60424464 | Msa0612040:CDS | 45.0% | |
| AAGCTTGAAACACAGCTGTC+AGG | - | chr4_2:60424538-60424557 | None:intergenic | 45.0% | |
| GACAGCTGTGTTTCAAGCTT+TGG | + | chr4_2:60424538-60424557 | Msa0612040:CDS | 45.0% | |
| !! | TGAGAGCACTGTTGGTTTGT+TGG | + | chr4_2:60424588-60424607 | Msa0612040:CDS | 45.0% |
| ACTCACATGTTCACCAGAGT+CGG | - | chr4_2:60424650-60424669 | None:intergenic | 45.0% | |
| AAACTTCTTACGACTGGTGG+TGG | + | chr4_2:60425064-60425083 | Msa0612040:intron | 45.0% | |
| TCTGATGCATGAACTTCAGG+AGG | + | chr4_2:60425147-60425166 | Msa0612040:CDS | 45.0% | |
| TCAGGAGGTGAAAATGGAAG+TGG | + | chr4_2:60425162-60425181 | Msa0612040:CDS | 45.0% | |
| TTTCACCTCCTGAAGCTTCT+GGG | - | chr4_2:60425203-60425222 | None:intergenic | 45.0% | |
| ! | TTTTCACCTCCTGAAGCTTC+TGG | - | chr4_2:60425204-60425223 | None:intergenic | 45.0% |
| AGAAGCTTCAGGAGGTGAAA+AGG | + | chr4_2:60425203-60425222 | Msa0612040:CDS | 45.0% | |
| GAAGCTTCAGGAGGTGAAAA+GGG | + | chr4_2:60425204-60425223 | Msa0612040:CDS | 45.0% | |
| GTGAAAAGGGAAGTGGAAGA+AGG | + | chr4_2:60425217-60425236 | Msa0612040:CDS | 45.0% | |
| ACTGATTATCAGGTTCCCCA+GGG | - | chr4_2:60425387-60425406 | None:intergenic | 45.0% | |
| !! | AGTCACAACAGATAGTGGAC+TGG | - | chr4_2:60425439-60425458 | None:intergenic | 45.0% |
| AAGTATAGTTCCTCTTCCCC+GGG | - | chr4_2:60425551-60425570 | None:intergenic | 45.0% | |
| CTGGTTAATATTCGTGCTCC+TGG | + | chr4_2:60425708-60425727 | Msa0612040:three_prime_UTR | 45.0% | |
| !!! | AGAATATTAAAATTTTAAAT+AGG | + | chr4_2:60420217-60420236 | Msa0612040:intron | 5.0% |
| !! | ATATTTAATATTATTATTGA+CGG | - | chr4_2:60421067-60421086 | None:intergenic | 5.0% |
| GCTCTTTGGTGAGAATGGTG+TGG | + | chr4_2:60418580-60418599 | Msa0612040:CDS | 50.0% | |
| CAGGACCAAATGGATCTCGA+GGG | - | chr4_2:60418610-60418629 | None:intergenic | 50.0% | |
| TCAGGACCAAATGGATCTCG+AGG | - | chr4_2:60418611-60418630 | None:intergenic | 50.0% | |
| AATCACCTTGTTGGGACGTC+AGG | - | chr4_2:60418629-60418648 | None:intergenic | 50.0% | |
| GGAAGGTGACTGATGATTGG+AGG | + | chr4_2:60418999-60419018 | Msa0612040:CDS | 50.0% | |
| GCTCTACCCATCTTCTACGA+AGG | - | chr4_2:60419877-60419896 | None:intergenic | 50.0% | |
| AGGCGCTTCGAGAATATTGG+AGG | + | chr4_2:60420711-60420730 | Msa0612040:intron | 50.0% | |
| GGCGCTTCGAGAATATTGGA+GGG | + | chr4_2:60420712-60420731 | Msa0612040:intron | 50.0% | |
| GGGTGTGTGAGAAGAGAGAT+TGG | + | chr4_2:60420732-60420751 | Msa0612040:intron | 50.0% | |
| TGGTCGCTGGTCAATAATGG+AGG | - | chr4_2:60420938-60420957 | None:intergenic | 50.0% | |
| TCGTGGTCGCTGGTCAATAA+TGG | - | chr4_2:60420941-60420960 | None:intergenic | 50.0% | |
| TTGACGACAGATCATGACGG+TGG | + | chr4_2:60420985-60421004 | Msa0612040:intron | 50.0% | |
| GACAGATCATGACGGTGGAT+TGG | + | chr4_2:60420990-60421009 | Msa0612040:intron | 50.0% | |
| ! | GATGATGGTATAGCGGCTGA+TGG | - | chr4_2:60421689-60421708 | None:intergenic | 50.0% |
| ATACCATCATCTCACTCCCC+AGG | + | chr4_2:60421698-60421717 | Msa0612040:intron | 50.0% | |
| AAGGAGAAGGCGGAAGAGAA+AGG | + | chr4_2:60422365-60422384 | Msa0612040:CDS | 50.0% | |
| ACAGACTCCACCTTAACGAC+GGG | - | chr4_2:60422410-60422429 | None:intergenic | 50.0% | |
| TGGACGAACAAGGGTGATGT+TGG | + | chr4_2:60422497-60422516 | Msa0612040:CDS | 50.0% | |
| ! | TGCATCAGGGTCCTCGTTTT+TGG | - | chr4_2:60422528-60422547 | None:intergenic | 50.0% |
| GTTCTTTGGTGAGAATGGCG+CGG | + | chr4_2:60422631-60422650 | Msa0612040:CDS | 50.0% | |
| TTGGTCCTGAGTTCCGAACA+AGG | + | chr4_2:60422672-60422691 | Msa0612040:CDS | 50.0% | |
| AGTCACCTTGTTCGGAACTC+AGG | - | chr4_2:60422680-60422699 | None:intergenic | 50.0% | |
| CGGTCGCTAACAAATGTCCA+AGG | - | chr4_2:60422736-60422755 | None:intergenic | 50.0% | |
| ATGGGTGATGAACAGTTGGC+TGG | - | chr4_2:60423118-60423137 | None:intergenic | 50.0% | |
| TTAGACGCCACATCAGAGGT+CGG | - | chr4_2:60423459-60423478 | None:intergenic | 50.0% | |
| GTCTGATGCTGATGGCTCTT+TGG | + | chr4_2:60423870-60423889 | Msa0612040:CDS | 50.0% | |
| AGGGAGATCACTACTGCCAA+AGG | - | chr4_2:60424083-60424102 | None:intergenic | 50.0% | |
| !! | GTTCTGAAGGAGCAGCTCAA+AGG | - | chr4_2:60424266-60424285 | None:intergenic | 50.0% |
| TACACGGCATCTGTTGGAGT+TGG | + | chr4_2:60424451-60424470 | Msa0612040:CDS | 50.0% | |
| TGCTGATGTCACCCTCCAAT+CGG | + | chr4_2:60424615-60424634 | Msa0612040:CDS | 50.0% | |
| TCAGGAGGTGAAAAGGGAAG+TGG | + | chr4_2:60425210-60425229 | Msa0612040:CDS | 50.0% | |
| GTTGGAACATGAAGTCCCCT+GGG | + | chr4_2:60425368-60425387 | Msa0612040:CDS | 50.0% | |
| TTGGAACATGAAGTCCCCTG+GGG | + | chr4_2:60425369-60425388 | Msa0612040:CDS | 50.0% | |
| CTGATTATCAGGTTCCCCAG+GGG | - | chr4_2:60425386-60425405 | None:intergenic | 50.0% | |
| ! | CACTGATTATCAGGTTCCCC+AGG | - | chr4_2:60425388-60425407 | None:intergenic | 50.0% |
| GCATGCCCTCGAGATCCATT+TGG | + | chr4_2:60418602-60418621 | Msa0612040:CDS | 55.0% | |
| GTTGGGACGTCAGGACCAAA+TGG | - | chr4_2:60418620-60418639 | None:intergenic | 55.0% | |
| TTGGTCCTGACGTCCCAACA+AGG | + | chr4_2:60418621-60418640 | Msa0612040:CDS | 55.0% | |
| TGAAACATCGTCGTGGTCGC+TGG | - | chr4_2:60420951-60420970 | None:intergenic | 55.0% | |
| ! | GAGAGTCGGTTTCGAATCCC+AGG | + | chr4_2:60421379-60421398 | Msa0612040:intron | 55.0% |
| GATGGTATAGCGGCTGATGG+TGG | - | chr4_2:60421686-60421705 | None:intergenic | 55.0% | |
| GTACCTGGGGAGTGAGATGA+TGG | - | chr4_2:60421704-60421723 | None:intergenic | 55.0% | |
| CATGGCCAATCCCGTCGTTA+AGG | + | chr4_2:60422397-60422416 | Msa0612040:CDS | 55.0% | |
| CTCCACCTTAACGACGGGAT+TGG | - | chr4_2:60422405-60422424 | None:intergenic | 55.0% | |
| CTGAATTGGGGGCAAGCAGT+TGG | - | chr4_2:60423803-60423822 | None:intergenic | 55.0% | |
| AGGGTCCGCACACTGAAAAG+TGG | + | chr4_2:60424304-60424323 | Msa0612040:CDS | 55.0% | |
| ACGGCATCTGTTGGAGTTGG+AGG | + | chr4_2:60424454-60424473 | Msa0612040:CDS | 55.0% | |
| TTCACCAGAGTCGGCAACCA+AGG | - | chr4_2:60424641-60424660 | None:intergenic | 55.0% | |
| CAATCCCACCCAGAAGCTTC+AGG | + | chr4_2:60425192-60425211 | Msa0612040:CDS | 55.0% | |
| ACCTCCTGAAGCTTCTGGGT+GGG | - | chr4_2:60425199-60425218 | None:intergenic | 55.0% | |
| ! | GCAAAGCTGGTTCAGGTGGT+TGG | + | chr4_2:60425350-60425369 | Msa0612040:CDS | 55.0% |
| GGTTGGAACATGAAGTCCCC+TGG | + | chr4_2:60425367-60425386 | Msa0612040:CDS | 55.0% | |
| !! | AGTGTCATTTCCCGGGGAAG+AGG | + | chr4_2:60425538-60425557 | Msa0612040:three_prime_UTR | 55.0% |
| ! | CTTGTTTCGTACGAGGCACC+AGG | - | chr4_2:60425729-60425748 | None:intergenic | 55.0% |
| GGCCAATCCCGTCGTTAAGG+TGG | + | chr4_2:60422400-60422419 | Msa0612040:CDS | 60.0% | |
| TGTCACCCTCCAATCGGCCT+TGG | + | chr4_2:60424621-60424640 | Msa0612040:CDS | 60.0% | |
| GGCAACCAAGGCCGATTGGA+GGG | - | chr4_2:60424629-60424648 | None:intergenic | 60.0% | |
| AGTCGGCAACCAAGGCCGAT+TGG | - | chr4_2:60424633-60424652 | None:intergenic | 60.0% | |
| TCCCACCCAGAAGCTTCAGG+AGG | + | chr4_2:60425195-60425214 | Msa0612040:CDS | 60.0% | |
| CACCTCCTGAAGCTTCTGGG+TGG | - | chr4_2:60425200-60425219 | None:intergenic | 60.0% | |
| ! | GAGCGCAAAGCTGGTTCAGG+TGG | + | chr4_2:60425346-60425365 | Msa0612040:CDS | 60.0% |
| CGGCAACCAAGGCCGATTGG+AGG | - | chr4_2:60424630-60424649 | None:intergenic | 65.0% | |
| !! | TCGGCCTTGGTTGCCGACTC+TGG | + | chr4_2:60424634-60424653 | Msa0612040:CDS | 65.0% |
| ! | AAGCGTGGGGAGCGCAAAGC+TGG | + | chr4_2:60425337-60425356 | Msa0612040:CDS | 65.0% |
| ! | GGGGAGCGCAAAGCTGGTTC+AGG | + | chr4_2:60425343-60425362 | Msa0612040:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60418431 | 60425790 | 60418431 | ID=Msa0612040;Name=Msa0612040 |
| chr4_2 | mRNA | 60418431 | 60425790 | 60418431 | ID=Msa0612040-mRNA-1;Parent=Msa0612040;Name=Msa0612040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.44|1|1|1|9|382|709 |
| chr4_2 | exon | 60418431 | 60418642 | 60418431 | ID=Msa0612040-mRNA-1:exon:16269;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60418994 | 60419232 | 60418994 | ID=Msa0612040-mRNA-1:exon:16270;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60419326 | 60419379 | 60419326 | ID=Msa0612040-mRNA-1:exon:16271;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60419512 | 60419662 | 60419512 | ID=Msa0612040-mRNA-1:exon:16272;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60422343 | 60422693 | 60422343 | ID=Msa0612040-mRNA-1:exon:16273;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60423420 | 60423733 | 60423420 | ID=Msa0612040-mRNA-1:exon:16274;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60423860 | 60423913 | 60423860 | ID=Msa0612040-mRNA-1:exon:16275;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60424185 | 60424663 | 60424185 | ID=Msa0612040-mRNA-1:exon:16276;Parent=Msa0612040-mRNA-1 |
| chr4_2 | exon | 60425133 | 60425790 | 60425133 | ID=Msa0612040-mRNA-1:exon:16277;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60418431 | 60418642 | 60418431 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60418994 | 60419232 | 60418994 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60419326 | 60419379 | 60419326 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60419512 | 60419662 | 60419512 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60422343 | 60422693 | 60422343 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60423420 | 60423733 | 60423420 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60423860 | 60423913 | 60423860 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60424185 | 60424663 | 60424185 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | CDS | 60425133 | 60425408 | 60425133 | ID=Msa0612040-mRNA-1:cds;Parent=Msa0612040-mRNA-1 |
| chr4_2 | three_prime_UTR | 60425409 | 60425790 | 60425409 | ID=Msa0612040-mRNA-1:three_prime_utr;Parent=Msa0612040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
