AlfalfaGEDB | Msa0556620

M. sativa cultivar zhongmu-4 / Msa0556620

KEGG: K18400
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556620	AES90270.2	94.492	472	10	1	1	472	29	484	0.0	916

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556620	G7JNM2	94.492	472	10	1	1	472	29	484	0.0	916

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0100600	Msa0556620	0.803486	3.407131e-49	-8.615850e-47
Msa0132460	Msa0556620	0.810871	9.290745e-51	-8.615850e-47
Msa0182050	Msa0556620	0.809813	1.571566e-50	-8.615850e-47
Msa0282290	Msa0556620	0.800725	1.259574e-48	-8.615850e-47
Msa0469430	Msa0556620	0.839296	1.724845e-57	-8.615850e-47
Msa0515110	Msa0556620	0.825849	3.745921e-54	-8.615850e-47
Msa0552570	Msa0556620	0.802435	5.617278e-49	-8.615850e-47
Msa0556620	Msa0612040	0.883694	3.613262e-71	-8.615850e-47
Msa0556620	Msa0652160	0.840923	6.490101e-58	-8.615850e-47
Msa0556620	Msa0694710	0.807365	5.236956e-50	-8.615850e-47

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556620	MtrunA17_Chr4g0045601	94.492	472	10	1	1	472	1	456	0.0	916
Msa0556620	MtrunA17_Chr4g0045591	57.931	290	103	5	1	288	1	273	1.93e-90	276
Msa0556620	MtrunA17_Chr8g0335221	33.444	302	173	7	25	310	53	342	7.10e-41	150
Msa0556620	MtrunA17_Chr7g0215661	33.333	285	165	9	14	290	48	315	2.48e-30	122

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556620	AT3G59670.1	41.478	487	221	19	25	472	56	517	2.94e-83	266
Msa0556620	AT4G37440.3	34.875	281	164	7	24	301	68	332	8.78e-38	143
Msa0556620	AT4G37440.2	34.875	281	164	7	24	301	68	332	9.38e-38	143
Msa0556620	AT4G37440.1	34.875	281	164	7	24	301	68	332	1.99e-37	143
Msa0556620	AT3G50040.3	33.702	181	105	6	100	273	108	280	3.98e-21	95.1
Msa0556620	AT3G50040.2	33.702	181	105	6	100	273	108	280	6.92e-21	95.1
Msa0556620	AT3G50040.4	33.702	181	105	6	100	273	108	280	6.92e-21	95.1
Msa0556620	AT3G50040.1	33.702	181	105	6	100	273	108	280	6.92e-21	95.1

Showing 1 to 8 of 8 entries

Previous1Next

Find 129 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGTTGAGGATACAA+CGG	0.687206	4_1:+54890147	Msa0556620:CDS
AAAGTATAGTTCCTCTTCCC+CGG	0.499685	4_1:-54892030	None:intergenic
AAAGTCCTACAAATTCTGCT+GGG	0.619351	4_1:+54890903	Msa0556620:CDS
AACAGACTCCACCTTAACGA+CGG	0.636006	4_1:-54888888	None:intergenic
AAGACGACGAAAGAAAGTTG+AGG	0.656367	4_1:+54890138	Msa0556620:CDS
AAGATCAAGTGATGCTGAAG+TGG	0.528838	4_1:+54889081	Msa0556620:CDS
AAGCGTGGGGAGCGCAAAGC+TGG	0.481385	4_1:+54891818	Msa0556620:CDS
AAGCTTGAAACACAGCTGTC+AGG	0.505459	4_1:-54891016	None:intergenic
AAGGAGAAGGCGGAAGAGAA+AGG	0.427652	4_1:+54888845	Msa0556620:five_prime_UTR
AAGTATAGTTCCTCTTCCCC+GGG	0.600473	4_1:-54892029	None:intergenic

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGATTACATTGAAGAG+AGG	-	chr4_1:54888240-54888259	None:intergenic	30.0%
TAACTTACCTCAATTCACAT+TGG	+	chr4_1:54888259-54888278	Msa0556620:intron	30.0%
TTGAACAGGTAAACTAAAAG+GGG	+	chr4_1:54888803-54888822	Msa0556620:intron	30.0%
TCCTTAATTAACGCAAACTT+TGG	-	chr4_1:54888830-54888849	None:intergenic	30.0%
TCTGTTCTTGATGAACAAAT+TGG	+	chr4_1:54888905-54888924	Msa0556620:CDS	30.0%
TAACATATTGACCTCTAACT+GGG	-	chr4_1:54889351-54889370	None:intergenic	30.0%
TTAACATATTGACCTCTAAC+TGG	-	chr4_1:54889352-54889371	None:intergenic	30.0%
TGATGCTTCAGTAAGAAATT+AGG	+	chr4_1:54889521-54889540	Msa0556620:intron	30.0%
ATCAAAGCATGCAATATCTA+AGG	-	chr4_1:54889563-54889582	None:intergenic	30.0%
CACAATCTAACTAGATATAG+TGG	-	chr4_1:54889770-54889789	None:intergenic	30.0%

Showing 1 to 10 of 240 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	54888086	54892273	54888086	ID=Msa0556620;Name=Msa0556620
chr4_1	mRNA	54888086	54892273	54888086	ID=Msa0556620-mRNA-1;Parent=Msa0556620;Name=Msa0556620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=180\|1\|1\|1\|0.8\|0.66\|6\|384\|472
chr4_1	exon	54888086	54888198	54888086	ID=Msa0556620-mRNA-1:exon:16288;Parent=Msa0556620-mRNA-1
chr4_1	exon	54888811	54889173	54888811	ID=Msa0556620-mRNA-1:exon:16289;Parent=Msa0556620-mRNA-1
chr4_1	exon	54889901	54890214	54889901	ID=Msa0556620-mRNA-1:exon:16290;Parent=Msa0556620-mRNA-1
chr4_1	exon	54890341	54890394	54890341	ID=Msa0556620-mRNA-1:exon:16291;Parent=Msa0556620-mRNA-1
chr4_1	exon	54890666	54891144	54890666	ID=Msa0556620-mRNA-1:exon:16292;Parent=Msa0556620-mRNA-1
chr4_1	exon	54891614	54892273	54891614	ID=Msa0556620-mRNA-1:exon:16293;Parent=Msa0556620-mRNA-1
chr4_1	five_prime_UTR	54888086	54888198	54888086	ID=Msa0556620-mRNA-1:five_prime_utr;Parent=Msa0556620-mRNA-1
chr4_1	five_prime_UTR	54888811	54888877	54888811	ID=Msa0556620-mRNA-1:five_prime_utr;Parent=Msa0556620-mRNA-1
chr4_1	CDS	54888878	54889173	54888878	ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1
chr4_1	CDS	54889901	54890214	54889901	ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1
chr4_1	CDS	54890341	54890394	54890341	ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1
chr4_1	CDS	54890666	54891144	54890666	ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1
chr4_1	CDS	54891614	54891889	54891614	ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1
chr4_1	three_prime_UTR	54891890	54892273	54891890	ID=Msa0556620-mRNA-1:three_prime_utr;Parent=Msa0556620-mRNA-1

Gene Sequence

>Msa0556620

ATGGCCAATCCCGTCGTTAAGGTGGAGTCTGTTCTTGATGAACAAATTGGCTCTACAAGTTCTAAAGTATTTGAAGACACAGATGTTGATATTGTGAGTTGGACGAACAAGGGTGATGTTGGATCTACCAAAAACGAGGACCCTGATGCAACTGAATATTCGAGTTCCTTTGCTGATACAGACTCTGATGCTGAAAATAGTTCAAGATCAAGTGATGCTGAAGTGGATTCAGAGTTCTTTGGTGAGAATGGCGCGGCAAGCCCTCATGATACTTTTGGTCCTGAGTTCCGAACAAGGAAGAGGAAGTTGACAGATCATTGGAGGAATTTCATCCGACCTCTGATGTGGCGTCTAAAATGGACCGAAATAAGACTCAAGCAAATTGAGTCACAAGAGTTAAAGTACAGTAGAGAACTTGCAGAGTATGACAAGGTAAAGCATACGGCGGCACGCGATCATTTTACCTTAAAAGAGTCTGGTTCGAAATCCTTGCCATTTTCAAGTCACCAGTACAGAAGTAAGGCGAAAATGAGAAGACGACGAAAGAAAGTTGAGGATACAACGGACATAGCATCTTATGCAGCACATCACTATCTTTTTTCCTATCTCGAGAATAAGAAGTCTGATGCTGATGGCTCTTTGGATGATGATTTTGACAATCCGGTGATCACAGAGCCACATGTTGATTCAACAGAAAAAACTGAAGATCAACCTTTGCTCAAATGCACTGACACTGATGTTTCCTTTGAGCTGCTCCTTCAGAACATTGAAAATCTACAATGTAGGGTCCGCACACTGAAAAGTGGCATCAGTGAAATCACGTCCAGAAATGTTTCGAGGTTTTCTTCATCAGAGAATTTTAGCCTTATTCTTCATGGTGATGTGCAGACTAGCTCTGCTCAAAGTCCTACAAATTCTGCTGGGAATGGATACACGGCATCTGTTGGAGTTGGAGGTATATATAATTCATCTCAGCATGCAGCTGATGAGTTTGAATTTGCAGACTTTGTCTTTCCTGACAGCTGTGTTTCAAGCTTTGGAGAAGCTACCAGTATTCCTGATATAATTGAGAGCACTGTTGGTTTGTTGGCCGCTGCTGATGTCACCCTCCAATCGGCCTTGGTTGCCGACTCTGGTGAACATATGGTAGAAAATGTTCTGATGCATGAACTTCAGGAGGTGAAAATGGAAGTGGAAGCTCACAATCCCACCCAGAAGCTTCAGGAGGTGAAAAGGGAAGTGGAAGAAGGTTCACATTCCGTTTCTATTCTCATGTCAGATAATGTAGCAACAACAACTTGCACGTCTCAAGAGCAATCAGCTCTCAAGACCTGTGTGAATAAAAGAAAGCGTGGGGAGCGCAAAGCTGGTTCAGGTGGTTGGAACATGAAGTCCCCTGGGGAACCTGATAATCAGTGA

Protein sequence

>Msa0556620

MANPVVKVESVLDEQIGSTSSKVFEDTDVDIVSWTNKGDVGSTKNEDPDATEYSSSFADTDSDAENSSRSSDAEVDSEFFGENGAASPHDTFGPEFRTRKRKLTDHWRNFIRPLMWRLKWTEIRLKQIESQELKYSRELAEYDKVKHTAARDHFTLKESGSKSLPFSSHQYRSKAKMRRRRKKVEDTTDIASYAAHHYLFSYLENKKSDADGSLDDDFDNPVITEPHVDSTEKTEDQPLLKCTDTDVSFELLLQNIENLQCRVRTLKSGISEITSRNVSRFSSSENFSLILHGDVQTSSAQSPTNSAGNGYTASVGVGGIYNSSQHAADEFEFADFVFPDSCVSSFGEATSIPDIIESTVGLLAAADVTLQSALVADSGEHMVENVLMHELQEVKMEVEAHNPTQKLQEVKREVEEGSHSVSILMSDNVATTTCTSQEQSALKTCVNKRKRGERKAGSGGWNMKSPGEPDNQ*