Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556620 | AES90270.2 | 94.492 | 472 | 10 | 1 | 1 | 472 | 29 | 484 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556620 | G7JNM2 | 94.492 | 472 | 10 | 1 | 1 | 472 | 29 | 484 | 0.0 | 916 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100600 | Msa0556620 | 0.803486 | 3.407131e-49 | -8.615850e-47 |
| Msa0132460 | Msa0556620 | 0.810871 | 9.290745e-51 | -8.615850e-47 |
| Msa0182050 | Msa0556620 | 0.809813 | 1.571566e-50 | -8.615850e-47 |
| Msa0469430 | Msa0556620 | 0.839296 | 1.724845e-57 | -8.615850e-47 |
| Msa0282290 | Msa0556620 | 0.800725 | 1.259574e-48 | -8.615850e-47 |
| Msa0515110 | Msa0556620 | 0.825849 | 3.745921e-54 | -8.615850e-47 |
| Msa0552570 | Msa0556620 | 0.802435 | 5.617278e-49 | -8.615850e-47 |
| Msa0556620 | Msa0612040 | 0.883694 | 3.613262e-71 | -8.615850e-47 |
| Msa0556620 | Msa0652160 | 0.840923 | 6.490101e-58 | -8.615850e-47 |
| Msa0556620 | Msa0694710 | 0.807365 | 5.236956e-50 | -8.615850e-47 |
| Msa0556620 | Msa0708630 | 0.812245 | 4.670902e-51 | -8.615850e-47 |
| Msa0556620 | Msa0846900 | 0.806103 | 9.677939e-50 | -8.615850e-47 |
| Msa0556620 | Msa1026710 | 0.802545 | 5.332629e-49 | -8.615850e-47 |
| Msa0556620 | Msa1144610 | 0.811891 | 5.578996e-51 | -8.615850e-47 |
| Msa0556620 | Msa1166670 | 0.824543 | 7.626379e-54 | -8.615850e-47 |
| Msa0556620 | Msa1420830 | 0.809639 | 1.712771e-50 | -8.615850e-47 |
| Msa0556620 | Msa1424570 | 0.801734 | 7.830395e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556620 | MtrunA17_Chr4g0045601 | 94.492 | 472 | 10 | 1 | 1 | 472 | 1 | 456 | 0.0 | 916 |
| Msa0556620 | MtrunA17_Chr4g0045591 | 57.931 | 290 | 103 | 5 | 1 | 288 | 1 | 273 | 1.93e-90 | 276 |
| Msa0556620 | MtrunA17_Chr8g0335221 | 33.444 | 302 | 173 | 7 | 25 | 310 | 53 | 342 | 7.10e-41 | 150 |
| Msa0556620 | MtrunA17_Chr7g0215661 | 33.333 | 285 | 165 | 9 | 14 | 290 | 48 | 315 | 2.48e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556620 | AT3G59670.1 | 41.478 | 487 | 221 | 19 | 25 | 472 | 56 | 517 | 2.94e-83 | 266 |
| Msa0556620 | AT4G37440.3 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 8.78e-38 | 143 |
| Msa0556620 | AT4G37440.2 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 9.38e-38 | 143 |
| Msa0556620 | AT4G37440.1 | 34.875 | 281 | 164 | 7 | 24 | 301 | 68 | 332 | 1.99e-37 | 143 |
| Msa0556620 | AT3G50040.3 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 3.98e-21 | 95.1 |
| Msa0556620 | AT3G50040.2 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.92e-21 | 95.1 |
| Msa0556620 | AT3G50040.4 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.92e-21 | 95.1 |
| Msa0556620 | AT3G50040.1 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.92e-21 | 95.1 |
Find 129 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAAGTTTGCGTTAATTA+AGG | 0.236636 | 4_1:+54888826 | Msa0556620:five_prime_UTR |
| AGAAAACCTCGAAACATTTC+TGG | 0.246323 | 4_1:-54890825 | None:intergenic |
| CTCTGATGTGGCGTCTAAAA+TGG | 0.252327 | 4_1:+54889942 | Msa0556620:CDS |
| GCAAGCCCTCATGATACTTT+TGG | 0.286985 | 4_1:+54889133 | Msa0556620:CDS |
| TGAACTTCAGGAGGTGAAAA+TGG | 0.307775 | 4_1:+54891637 | Msa0556620:CDS |
| AGTCTTATTCACTGATTATC+AGG | 0.308225 | 4_1:-54891875 | None:intergenic |
| GACAGCTGTGTTTCAAGCTT+TGG | 0.311111 | 4_1:+54891019 | Msa0556620:CDS |
| TTTCACCTCCTGAAGCTTCT+GGG | 0.320720 | 4_1:-54891681 | None:intergenic |
| CTGTACTGGTGACTTGAAAA+TGG | 0.334286 | 4_1:-54890097 | None:intergenic |
| GTCTGATGCTGATGGCTCTT+TGG | 0.338203 | 4_1:+54890351 | Msa0556620:CDS |
| TGTTCTGATGCATGAACTTC+AGG | 0.338964 | 4_1:+54891625 | Msa0556620:CDS |
| AATTTGCTTGAGTCTTATTT+CGG | 0.351566 | 4_1:-54889966 | None:intergenic |
| TCTGTTCTTGATGAACAAAT+TGG | 0.353691 | 4_1:+54888905 | Msa0556620:CDS |
| CAATCCCACCCAGAAGCTTC+AGG | 0.360739 | 4_1:+54891673 | Msa0556620:CDS |
| CTCAATTATATCAGGAATAC+TGG | 0.361289 | 4_1:-54891050 | None:intergenic |
| CCATTCCCAGCAGAATTTGT+AGG | 0.379539 | 4_1:-54890908 | None:intergenic |
| GGAATTAAAGTCACCTTGTT+CGG | 0.384584 | 4_1:-54889165 | None:intergenic |
| GGGGAGCGCAAAGCTGGTTC+AGG | 0.393635 | 4_1:+54891824 | Msa0556620:CDS |
| TCGGCCTTGGTTGCCGACTC+TGG | 0.398219 | 4_1:+54891115 | Msa0556620:CDS |
| TCAGAGTTCTTTGGTGAGAA+TGG | 0.403213 | 4_1:+54889106 | Msa0556620:CDS |
| TTTGAACAGGTAAACTAAAA+GGG | 0.407879 | 4_1:+54888802 | Msa0556620:intron |
| CTCGAATATTCAGTTGCATC+AGG | 0.409498 | 4_1:-54889019 | None:intergenic |
| TCCTTAATTAACGCAAACTT+TGG | 0.410676 | 4_1:-54888827 | None:intergenic |
| GCACATCACCATGAAGAATA+AGG | 0.413362 | 4_1:-54890865 | None:intergenic |
| ACCTCCTGAAGCTTCTGGGT+GGG | 0.414016 | 4_1:-54891677 | None:intergenic |
| CTGGTTAATATTCGTGCTCC+TGG | 0.419824 | 4_1:+54892191 | Msa0556620:three_prime_UTR |
| TGTCACCCTCCAATCGGCCT+TGG | 0.422704 | 4_1:+54891102 | Msa0556620:CDS |
| AAGGAGAAGGCGGAAGAGAA+AGG | 0.427652 | 4_1:+54888845 | Msa0556620:five_prime_UTR |
| ACAGTGCTCTCAATTATATC+AGG | 0.430041 | 4_1:-54891058 | None:intergenic |
| AGAAGCTTCAGGAGGTGAAA+AGG | 0.432992 | 4_1:+54891684 | Msa0556620:CDS |
| GAAGTGGATTCAGAGTTCTT+TGG | 0.433390 | 4_1:+54889097 | Msa0556620:CDS |
| AGTATTACAGTGTCATTTCC+CGG | 0.434495 | 4_1:+54892011 | Msa0556620:three_prime_UTR |
| TGAGAGCACTGTTGGTTTGT+TGG | 0.437833 | 4_1:+54891069 | Msa0556620:CDS |
| AGAGGAAGTTGACAGATCAT+TGG | 0.438955 | 4_1:+54889903 | Msa0556620:CDS |
| CATGGCCAATCCCGTCGTTA+AGG | 0.441041 | 4_1:+54888877 | Msa0556620:exon |
| TTTAAATAAGATGTCAACTT+GGG | 0.449583 | 4_1:-54891969 | None:intergenic |
| CACTGATTATCAGGTTCCCC+AGG | 0.452914 | 4_1:-54891866 | None:intergenic |
| CAAAGTCCTACAAATTCTGC+TGG | 0.460562 | 4_1:+54890902 | Msa0556620:CDS |
| CCTACAAATTCTGCTGGGAA+TGG | 0.476255 | 4_1:+54890908 | Msa0556620:CDS |
| TCAATTGAAAATGAAGACAT+AGG | 0.478092 | 4_1:-54892090 | None:intergenic |
| AAGCGTGGGGAGCGCAAAGC+TGG | 0.481385 | 4_1:+54891818 | Msa0556620:CDS |
| GATATAATTGAGAGCACTGT+TGG | 0.485330 | 4_1:+54891061 | Msa0556620:CDS |
| GTACCTGAGGAGTGAGATGA+TGG | 0.488743 | 4_1:-54888180 | None:intergenic |
| TTGAACAGGTAAACTAAAAG+GGG | 0.489450 | 4_1:+54888803 | Msa0556620:intron |
| AGTGTCATTTCCCGGGGAAG+AGG | 0.491709 | 4_1:+54892019 | Msa0556620:three_prime_UTR |
| GTTACAGTCACAACAGATAG+TGG | 0.495932 | 4_1:-54891922 | None:intergenic |
| GTTTAAATAAGATGTCAACT+TGG | 0.498408 | 4_1:-54891970 | None:intergenic |
| AAAGTATAGTTCCTCTTCCC+CGG | 0.499685 | 4_1:-54892030 | None:intergenic |
| ACGGCATCTGTTGGAGTTGG+AGG | 0.501116 | 4_1:+54890935 | Msa0556620:CDS |
| AATGGATACACGGCATCTGT+TGG | 0.502595 | 4_1:+54890926 | Msa0556620:CDS |
| GAAGCTTCAGGAGGTGAAAA+GGG | 0.504312 | 4_1:+54891685 | Msa0556620:CDS |
| AAGCTTGAAACACAGCTGTC+AGG | 0.505459 | 4_1:-54891016 | None:intergenic |
| ACATTGAAAATCTACAATGT+AGG | 0.506632 | 4_1:+54890765 | Msa0556620:CDS |
| TCACGTCCAGAAATGTTTCG+AGG | 0.507311 | 4_1:+54890819 | Msa0556620:CDS |
| GGTTGGAACATGAAGTCCCC+TGG | 0.508821 | 4_1:+54891848 | Msa0556620:CDS |
| TGCTGATGTCACCCTCCAAT+CGG | 0.510231 | 4_1:+54891096 | Msa0556620:CDS |
| ATCTGACATGAGAATAGAAA+CGG | 0.514060 | 4_1:-54891729 | None:intergenic |
| AGTCGGCAACCAAGGCCGAT+TGG | 0.521202 | 4_1:-54891111 | None:intergenic |
| TCAGGAGGTGAAAAGGGAAG+TGG | 0.522015 | 4_1:+54891691 | Msa0556620:CDS |
| CACCTCCTGAAGCTTCTGGG+TGG | 0.522706 | 4_1:-54891678 | None:intergenic |
| CTCCACCTTAACGACGGGAT+TGG | 0.526761 | 4_1:-54888882 | None:intergenic |
| GCAAAGCTGGTTCAGGTGGT+TGG | 0.527885 | 4_1:+54891831 | Msa0556620:CDS |
| CATTGAAAATCTACAATGTA+GGG | 0.528238 | 4_1:+54890766 | Msa0556620:CDS |
| AGTCACCTTGTTCGGAACTC+AGG | 0.528629 | 4_1:-54889157 | None:intergenic |
| AAGATCAAGTGATGCTGAAG+TGG | 0.528838 | 4_1:+54889081 | Msa0556620:CDS |
| TACACGGCATCTGTTGGAGT+TGG | 0.531038 | 4_1:+54890932 | Msa0556620:CDS |
| AAGTCACCAGTACAGAAGTA+AGG | 0.532646 | 4_1:+54890105 | Msa0556620:CDS |
| GTGAAAAGGGAAGTGGAAGA+AGG | 0.534943 | 4_1:+54891698 | Msa0556620:CDS |
| GTATTACAGTGTCATTTCCC+GGG | 0.537443 | 4_1:+54892012 | Msa0556620:three_prime_UTR |
| CGGCAACCAAGGCCGATTGG+AGG | 0.540629 | 4_1:-54891108 | None:intergenic |
| GGCAACCAAGGCCGATTGGA+GGG | 0.541238 | 4_1:-54891107 | None:intergenic |
| GTTTGCGTTAATTAAGGAGA+AGG | 0.542510 | 4_1:+54888832 | Msa0556620:five_prime_UTR |
| TGGACGAACAAGGGTGATGT+TGG | 0.545407 | 4_1:+54888977 | Msa0556620:CDS |
| TCAGGAGGTGAAAATGGAAG+TGG | 0.551172 | 4_1:+54891643 | Msa0556620:CDS |
| ACACAGAGAAACACTAAACT+AGG | 0.556715 | 4_1:+54888095 | Msa0556620:five_prime_UTR |
| GTGTCAGTGCATTTGAGCAA+AGG | 0.557356 | 4_1:-54890713 | None:intergenic |
| GGCCAATCCCGTCGTTAAGG+TGG | 0.558790 | 4_1:+54888880 | Msa0556620:CDS |
| GGAAGTTGACAGATCATTGG+AGG | 0.560199 | 4_1:+54889906 | Msa0556620:CDS |
| ATACCATCATCTCACTCCTC+AGG | 0.566479 | 4_1:+54888177 | Msa0556620:five_prime_UTR |
| ACAGACTCCACCTTAACGAC+GGG | 0.568340 | 4_1:-54888887 | None:intergenic |
| GTTGGAACATGAAGTCCCCT+GGG | 0.571232 | 4_1:+54891849 | Msa0556620:CDS |
| GTTGTTTCGTACAAGGCACC+AGG | 0.579065 | 4_1:-54892209 | None:intergenic |
| CAATTGAAAATGAAGACATA+GGG | 0.580017 | 4_1:-54892089 | None:intergenic |
| TTCACCAGAGTCGGCAACCA+AGG | 0.581301 | 4_1:-54891119 | None:intergenic |
| GAGCGCAAAGCTGGTTCAGG+TGG | 0.583476 | 4_1:+54891827 | Msa0556620:CDS |
| ACTCACATGTTCACCAGAGT+CGG | 0.590003 | 4_1:-54891128 | None:intergenic |
| GTATGACAAGGTAAAGCATA+CGG | 0.590399 | 4_1:+54890027 | Msa0556620:CDS |
| TATCTCTTGCATGTTACAAG+AGG | 0.590833 | 4_1:-54892154 | None:intergenic |
| ATCAGAGTCTGTATCAGCAA+AGG | 0.596262 | 4_1:-54889044 | None:intergenic |
| AAGTATAGTTCCTCTTCCCC+GGG | 0.600473 | 4_1:-54892029 | None:intergenic |
| TTCTGCTGGGAATGGATACA+CGG | 0.600834 | 4_1:+54890916 | Msa0556620:CDS |
| TTAAATAAGATGTCAACTTG+GGG | 0.601404 | 4_1:-54891968 | None:intergenic |
| GTTCTGAAGGAGCAGCTCAA+AGG | 0.601866 | 4_1:-54890744 | None:intergenic |
| AATAAGAAGTCTGATGCTGA+TGG | 0.604157 | 4_1:+54890343 | Msa0556620:CDS |
| TCGAATATTCAGTTGCATCA+GGG | 0.605831 | 4_1:-54889018 | None:intergenic |
| TATTGTGAGTTGGACGAACA+AGG | 0.606643 | 4_1:+54888967 | Msa0556620:CDS |
| GTGTGAATAAAAGAAAGCGT+GGG | 0.607422 | 4_1:+54891804 | Msa0556620:CDS |
| TTGGTCCTGAGTTCCGAACA+AGG | 0.611859 | 4_1:+54889152 | Msa0556620:CDS |
| CAGATGTTGATATTGTGAGT+TGG | 0.612336 | 4_1:+54888957 | Msa0556620:CDS |
| ACTGATTATCAGGTTCCCCA+GGG | 0.614893 | 4_1:-54891865 | None:intergenic |
| AGGGTCCGCACACTGAAAAG+TGG | 0.615591 | 4_1:+54890785 | Msa0556620:CDS |
| AAAGTCCTACAAATTCTGCT+GGG | 0.619351 | 4_1:+54890903 | Msa0556620:CDS |
| AGAGAAAGGTTTAAGAGACA+TGG | 0.620727 | 4_1:+54888859 | Msa0556620:exon |
| TGCGTTAATTAAGGAGAAGG+CGG | 0.622535 | 4_1:+54888835 | Msa0556620:five_prime_UTR |
| ATTTCATCCGACCTCTGATG+TGG | 0.624861 | 4_1:+54889930 | Msa0556620:CDS |
| TGTGTGAATAAAAGAAAGCG+TGG | 0.625451 | 4_1:+54891803 | Msa0556620:CDS |
| AACAGACTCCACCTTAACGA+CGG | 0.636006 | 4_1:-54888888 | None:intergenic |
| TCAGGACCAAAAGTATCATG+AGG | 0.639160 | 4_1:-54889139 | None:intergenic |
| TATTACAGTGTCATTTCCCG+GGG | 0.646527 | 4_1:+54892013 | Msa0556620:three_prime_UTR |
| TTAGACGCCACATCAGAGGT+CGG | 0.649299 | 4_1:-54889937 | None:intergenic |
| AGTCACAACAGATAGTGGAC+TGG | 0.656168 | 4_1:-54891917 | None:intergenic |
| AAGACGACGAAAGAAAGTTG+AGG | 0.656367 | 4_1:+54890138 | Msa0556620:CDS |
| TTGGAGGGTGACATCAGCAG+CGG | 0.658255 | 4_1:-54891092 | None:intergenic |
| GTTCTTTGGTGAGAATGGCG+CGG | 0.661080 | 4_1:+54889111 | Msa0556620:CDS |
| TGAACAGGTAAACTAAAAGG+GGG | 0.666124 | 4_1:+54888804 | Msa0556620:intron |
| GATGGTATAGCGGCTGATGG+TGG | 0.673515 | 4_1:-54888162 | None:intergenic |
| GATGATGGTATAGCGGCTGA+TGG | 0.675995 | 4_1:-54888165 | None:intergenic |
| CAGGACCAAAAGTATCATGA+GGG | 0.684798 | 4_1:-54889138 | None:intergenic |
| AAAGAAAGTTGAGGATACAA+CGG | 0.687206 | 4_1:+54890147 | Msa0556620:CDS |
| CTGGTGACTTGAAAATGGCA+AGG | 0.692316 | 4_1:-54890092 | None:intergenic |
| TCCCACCCAGAAGCTTCAGG+AGG | 0.699328 | 4_1:+54891676 | Msa0556620:CDS |
| TGTGAATAAAAGAAAGCGTG+GGG | 0.699887 | 4_1:+54891805 | Msa0556620:CDS |
| CTGATTATCAGGTTCCCCAG+GGG | 0.702960 | 4_1:-54891864 | None:intergenic |
| ATTGTGAGTTGGACGAACAA+GGG | 0.703347 | 4_1:+54888968 | Msa0556620:CDS |
| AGAACTTGCAGAGTATGACA+AGG | 0.715284 | 4_1:+54890015 | Msa0556620:CDS |
| GGAGTGAGATGATGGTATAG+CGG | 0.745589 | 4_1:-54888172 | None:intergenic |
| TCTGATGCATGAACTTCAGG+AGG | 0.750934 | 4_1:+54891628 | Msa0556620:CDS |
| TGACAAGGTAAAGCATACGG+CGG | 0.760192 | 4_1:+54890030 | Msa0556620:CDS |
| TTGGAACATGAAGTCCCCTG+GGG | 0.780983 | 4_1:+54891850 | Msa0556620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTTAATATTAAATTC+TGG | + | chr4_1:54888638-54888657 | Msa0556620:intron | 10.0% |
| !!! | TTATTTATATTTTTGATACA+TGG | + | chr4_1:54889859-54889878 | Msa0556620:intron | 10.0% |
| !!! | ACAAAATATATTAATTTTCT+TGG | + | chr4_1:54891464-54891483 | Msa0556620:intron | 10.0% |
| !! | AACAGATTAACAAATTAAAA+GGG | - | chr4_1:54888579-54888598 | None:intergenic | 15.0% |
| !! | ATGAAAATTAAACATTTCAT+GGG | - | chr4_1:54888678-54888697 | None:intergenic | 15.0% |
| !! | TATGAAAATTAAACATTTCA+TGG | - | chr4_1:54888679-54888698 | None:intergenic | 15.0% |
| !! | TAATTAAAGATTTGCATATT+TGG | - | chr4_1:54889189-54889208 | None:intergenic | 15.0% |
| !! | GAACAGATTAACAAATTAAA+AGG | - | chr4_1:54888580-54888599 | None:intergenic | 20.0% |
| !! | AAATCTTTAATTATCTTCCT+TGG | + | chr4_1:54889196-54889215 | Msa0556620:intron | 20.0% |
| !! | ATTCAAACCTAATAGTTAAT+AGG | + | chr4_1:54889440-54889459 | Msa0556620:intron | 20.0% |
| !! | AAATATGCCTATTAACTATT+AGG | - | chr4_1:54889450-54889469 | None:intergenic | 20.0% |
| !! | AGAGTTAGAATAAAAACTAT+GGG | - | chr4_1:54889617-54889636 | None:intergenic | 20.0% |
| !! | AAGAGTTAGAATAAAAACTA+TGG | - | chr4_1:54889618-54889637 | None:intergenic | 20.0% |
| !! | GATTACTAAGCAAAATTAAA+GGG | - | chr4_1:54890583-54890602 | None:intergenic | 20.0% |
| !! | TGATTACTAAGCAAAATTAA+AGG | - | chr4_1:54890584-54890603 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTATATGCTCTTT+TGG | + | chr4_1:54890638-54890657 | Msa0556620:intron | 20.0% |
| !! | GAATCGAAATAAATCATATT+TGG | - | chr4_1:54891233-54891252 | None:intergenic | 20.0% |
| !! | CTAACAAATATCTATCAATA+TGG | - | chr4_1:54891255-54891274 | None:intergenic | 20.0% |
| !! | CATATTGATAGATATTTGTT+AGG | + | chr4_1:54891253-54891272 | Msa0556620:intron | 20.0% |
| !! | CTTAAAACAACAACTAAAAA+GGG | + | chr4_1:54891501-54891520 | Msa0556620:intron | 20.0% |
| !! | TTTAAATAAGATGTCAACTT+GGG | - | chr4_1:54891972-54891991 | None:intergenic | 20.0% |
| !!! | TTGCTTGGTTTTTACATAAT+TGG | + | chr4_1:54888359-54888378 | Msa0556620:intron | 25.0% |
| !!! | TGCTTGGTTTTTACATAATT+GGG | + | chr4_1:54888360-54888379 | Msa0556620:intron | 25.0% |
| ! | AACTGAATTGTGAAATAGAT+TGG | - | chr4_1:54888552-54888571 | None:intergenic | 25.0% |
| !!! | TATGCATTTTGATTTTGAAC+AGG | + | chr4_1:54888789-54888808 | Msa0556620:intron | 25.0% |
| !! | TTTTGAACAGGTAAACTAAA+AGG | + | chr4_1:54888801-54888820 | Msa0556620:intron | 25.0% |
| ! | TTTGAACAGGTAAACTAAAA+GGG | + | chr4_1:54888802-54888821 | Msa0556620:intron | 25.0% |
| !!! | GACTTTTATTTTACTGCATA+TGG | - | chr4_1:54889314-54889333 | None:intergenic | 25.0% |
| !! | CGAATTAATTGACTCTAAAA+AGG | - | chr4_1:54889710-54889729 | None:intergenic | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | + | chr4_1:54889775-54889794 | Msa0556620:intron | 25.0% |
| !!! | AATTTGCTTGAGTCTTATTT+CGG | - | chr4_1:54889969-54889988 | None:intergenic | 25.0% |
| ! | TTATTCTCTACAGTAAGTAA+AGG | - | chr4_1:54890328-54890347 | None:intergenic | 25.0% |
| ! | TCTTTCACTTTATTAACCTT+TGG | + | chr4_1:54890545-54890564 | Msa0556620:intron | 25.0% |
| ! | AGCATATAAAAAAACTGTCA+TGG | - | chr4_1:54890634-54890653 | None:intergenic | 25.0% |
| ! | ACATTGAAAATCTACAATGT+AGG | + | chr4_1:54890765-54890784 | Msa0556620:CDS | 25.0% |
| ! | CATTGAAAATCTACAATGTA+GGG | + | chr4_1:54890766-54890785 | Msa0556620:CDS | 25.0% |
| !!! | AATTTTAGCCTTATTCTTCA+TGG | + | chr4_1:54890857-54890876 | Msa0556620:CDS | 25.0% |
| !!! | ATGTGAGTTTTCTAAAAGTA+TGG | + | chr4_1:54891143-54891162 | Msa0556620:intron | 25.0% |
| ! | TCGAAATAAATCATATTTGG+TGG | - | chr4_1:54891230-54891249 | None:intergenic | 25.0% |
| ! | TACAAAAGCGACAATTAAAA+AGG | - | chr4_1:54891281-54891300 | None:intergenic | 25.0% |
| !!! | CCTTTTTAGTTGTTGTTTTA+AGG | - | chr4_1:54891503-54891522 | None:intergenic | 25.0% |
| ! | CCTTAAAACAACAACTAAAA+AGG | + | chr4_1:54891500-54891519 | Msa0556620:intron | 25.0% |
| ! | TTAAATAAGATGTCAACTTG+GGG | - | chr4_1:54891971-54891990 | None:intergenic | 25.0% |
| ! | GTTTAAATAAGATGTCAACT+TGG | - | chr4_1:54891973-54891992 | None:intergenic | 25.0% |
| ! | CAATTGAAAATGAAGACATA+GGG | - | chr4_1:54892092-54892111 | None:intergenic | 25.0% |
| ! | TCAATTGAAAATGAAGACAT+AGG | - | chr4_1:54892093-54892112 | None:intergenic | 25.0% |
| !! | TTTTCAATTGATCAGTATAC+CGG | + | chr4_1:54892102-54892121 | Msa0556620:three_prime_UTR | 25.0% |
| ! | CACTTTATCCAATTAAAAAG+AGG | - | chr4_1:54892249-54892268 | None:intergenic | 25.0% |
| AAGATGATTACATTGAAGAG+AGG | - | chr4_1:54888240-54888259 | None:intergenic | 30.0% | |
| TAACTTACCTCAATTCACAT+TGG | + | chr4_1:54888259-54888278 | Msa0556620:intron | 30.0% | |
| ! | GTTGTTAGCTAAATTTTGCT+TGG | + | chr4_1:54888344-54888363 | Msa0556620:intron | 30.0% |
| TTGAACAGGTAAACTAAAAG+GGG | + | chr4_1:54888803-54888822 | Msa0556620:intron | 30.0% | |
| TCCTTAATTAACGCAAACTT+TGG | - | chr4_1:54888830-54888849 | None:intergenic | 30.0% | |
| TCTGTTCTTGATGAACAAAT+TGG | + | chr4_1:54888905-54888924 | Msa0556620:CDS | 30.0% | |
| ! | TCAACATTTTCATAAGACCA+GGG | - | chr4_1:54889258-54889277 | None:intergenic | 30.0% |
| TAACATATTGACCTCTAACT+GGG | - | chr4_1:54889351-54889370 | None:intergenic | 30.0% | |
| TTAACATATTGACCTCTAAC+TGG | - | chr4_1:54889352-54889371 | None:intergenic | 30.0% | |
| TGATGCTTCAGTAAGAAATT+AGG | + | chr4_1:54889521-54889540 | Msa0556620:intron | 30.0% | |
| ATCAAAGCATGCAATATCTA+AGG | - | chr4_1:54889563-54889582 | None:intergenic | 30.0% | |
| CACAATCTAACTAGATATAG+TGG | - | chr4_1:54889770-54889789 | None:intergenic | 30.0% | |
| TTATGGTGAAGCAAAATTCT+TGG | + | chr4_1:54889792-54889811 | Msa0556620:intron | 30.0% | |
| TGGATTTCCTGTATTAATGT+AGG | + | chr4_1:54889879-54889898 | Msa0556620:intron | 30.0% | |
| ! | CATTTTACCTTAAAAGAGTC+TGG | + | chr4_1:54890061-54890080 | Msa0556620:CDS | 30.0% |
| AAAGAAAGTTGAGGATACAA+CGG | + | chr4_1:54890147-54890166 | Msa0556620:CDS | 30.0% | |
| !!! | CACTATCTTTTTTCCTATCT+CGG | + | chr4_1:54890193-54890212 | Msa0556620:CDS | 30.0% |
| ATTCACATACTTCTCTGAAT+TGG | - | chr4_1:54890298-54890317 | None:intergenic | 30.0% | |
| TCTTTCATTGAGAGAAAATG+AGG | + | chr4_1:54890464-54890483 | Msa0556620:intron | 30.0% | |
| ! | TTTTCTGTTGAATCAACATG+TGG | - | chr4_1:54890680-54890699 | None:intergenic | 30.0% |
| ! | GTAGATTTTCAATGTTCTGA+AGG | - | chr4_1:54890760-54890779 | None:intergenic | 30.0% |
| CTCAATTATATCAGGAATAC+TGG | - | chr4_1:54891053-54891072 | None:intergenic | 30.0% | |
| !! | TTCTAGTTCTAGTCATAAAC+TGG | - | chr4_1:54891195-54891214 | None:intergenic | 30.0% |
| TCGTTGCAATAAATAGTGAA+GGG | - | chr4_1:54891376-54891395 | None:intergenic | 30.0% | |
| CTATTTATTGCAACGAGAAA+AGG | + | chr4_1:54891380-54891399 | Msa0556620:intron | 30.0% | |
| ATCTGACATGAGAATAGAAA+CGG | - | chr4_1:54891732-54891751 | None:intergenic | 30.0% | |
| !! | AGTCTTATTCACTGATTATC+AGG | - | chr4_1:54891878-54891897 | None:intergenic | 30.0% |
| TCAGTACTAAGCTAAAAAAC+CGG | - | chr4_1:54892124-54892143 | None:intergenic | 30.0% | |
| !! | AGATATTCTGAAAGCTTTTC+TGG | + | chr4_1:54892172-54892191 | Msa0556620:three_prime_UTR | 30.0% |
| ! | CAAAAAAGTTGTTTCGTACA+AGG | - | chr4_1:54892219-54892238 | None:intergenic | 30.0% |
| ! | GACATCTTCCTCTTTTTAAT+TGG | + | chr4_1:54892238-54892257 | Msa0556620:three_prime_UTR | 30.0% |
| ACACAGAGAAACACTAAACT+AGG | + | chr4_1:54888095-54888114 | Msa0556620:five_prime_UTR | 35.0% | |
| !! | AATCTGTTCTGCTTTTGCAA+TGG | + | chr4_1:54888591-54888610 | Msa0556620:intron | 35.0% |
| TGAACAGGTAAACTAAAAGG+GGG | + | chr4_1:54888804-54888823 | Msa0556620:intron | 35.0% | |
| GCCAAAGTTTGCGTTAATTA+AGG | + | chr4_1:54888826-54888845 | Msa0556620:five_prime_UTR | 35.0% | |
| GTTTGCGTTAATTAAGGAGA+AGG | + | chr4_1:54888832-54888851 | Msa0556620:five_prime_UTR | 35.0% | |
| AGAGAAAGGTTTAAGAGACA+TGG | + | chr4_1:54888859-54888878 | Msa0556620:exon | 35.0% | |
| CAGATGTTGATATTGTGAGT+TGG | + | chr4_1:54888957-54888976 | Msa0556620:CDS | 35.0% | |
| TCGAATATTCAGTTGCATCA+GGG | - | chr4_1:54889021-54889040 | None:intergenic | 35.0% | |
| GGAATTAAAGTCACCTTGTT+CGG | - | chr4_1:54889168-54889187 | None:intergenic | 35.0% | |
| !! | GTCCTTTTTCATATACTGGT+CGG | - | chr4_1:54889236-54889255 | None:intergenic | 35.0% |
| ! | CTCAACATTTTCATAAGACC+AGG | - | chr4_1:54889259-54889278 | None:intergenic | 35.0% |
| AACATATTGACCTCTAACTG+GGG | - | chr4_1:54889350-54889369 | None:intergenic | 35.0% | |
| GCTAGTTGAAAAGTGAGTAA+AGG | + | chr4_1:54889386-54889405 | Msa0556620:intron | 35.0% | |
| TTTCACATGTCATATACAGC+TGG | - | chr4_1:54889493-54889512 | None:intergenic | 35.0% | |
| ATCAATTGACGATTAGCACA+AGG | - | chr4_1:54889738-54889757 | None:intergenic | 35.0% | |
| TTGTGCTAATCGTCAATTGA+TGG | + | chr4_1:54889737-54889756 | Msa0556620:intron | 35.0% | |
| TCCTGTATTAATGTAGGAAG+AGG | + | chr4_1:54889885-54889904 | Msa0556620:intron | 35.0% | |
| TCCTCTTCCTACATTAATAC+AGG | - | chr4_1:54889889-54889908 | None:intergenic | 35.0% | |
| GTATGACAAGGTAAAGCATA+CGG | + | chr4_1:54890027-54890046 | Msa0556620:CDS | 35.0% | |
| ! | TTTCGAACCAGACTCTTTTA+AGG | - | chr4_1:54890071-54890090 | None:intergenic | 35.0% |
| AAAAAAGCTCATACCGAGAT+AGG | - | chr4_1:54890209-54890228 | None:intergenic | 35.0% | |
| AATAAGAAGTCTGATGCTGA+TGG | + | chr4_1:54890343-54890362 | Msa0556620:CDS | 35.0% | |
| !! | GGATGATGATTTTGACAATC+CGG | + | chr4_1:54890372-54890391 | Msa0556620:CDS | 35.0% |
| !! | GATGATGATTTTGACAATCC+GGG | + | chr4_1:54890373-54890392 | Msa0556620:CDS | 35.0% |
| TTAGCATATCATTAGCAGCA+AGG | - | chr4_1:54890406-54890425 | None:intergenic | 35.0% | |
| !! | ATTTTAACAGCACTAGTGAG+TGG | - | chr4_1:54890433-54890452 | None:intergenic | 35.0% |
| TTCATTGAGAGAAAATGAGG+AGG | + | chr4_1:54890467-54890486 | Msa0556620:intron | 35.0% | |
| ATTCAACTGCATTACGTTTC+TGG | + | chr4_1:54890504-54890523 | Msa0556620:intron | 35.0% | |
| AGAAAACCTCGAAACATTTC+TGG | - | chr4_1:54890828-54890847 | None:intergenic | 35.0% | |
| AAAGTCCTACAAATTCTGCT+GGG | + | chr4_1:54890903-54890922 | Msa0556620:CDS | 35.0% | |
| ACAGTGCTCTCAATTATATC+AGG | - | chr4_1:54891061-54891080 | None:intergenic | 35.0% | |
| !! | GATATAATTGAGAGCACTGT+TGG | + | chr4_1:54891061-54891080 | Msa0556620:CDS | 35.0% |
| CTCGTTGCAATAAATAGTGA+AGG | - | chr4_1:54891377-54891396 | None:intergenic | 35.0% | |
| AAGACAAAACTTCTTACGAC+TGG | + | chr4_1:54891539-54891558 | Msa0556620:intron | 35.0% | |
| ! | ACGCTTTCTTTTATTCACAC+AGG | - | chr4_1:54891804-54891823 | None:intergenic | 35.0% |
| TGTGTGAATAAAAGAAAGCG+TGG | + | chr4_1:54891803-54891822 | Msa0556620:CDS | 35.0% | |
| ! | GTGTGAATAAAAGAAAGCGT+GGG | + | chr4_1:54891804-54891823 | Msa0556620:CDS | 35.0% |
| ! | TGTGAATAAAAGAAAGCGTG+GGG | + | chr4_1:54891805-54891824 | Msa0556620:CDS | 35.0% |
| !! | AGTATTACAGTGTCATTTCC+CGG | + | chr4_1:54892011-54892030 | Msa0556620:three_prime_UTR | 35.0% |
| TATCTCTTGCATGTTACAAG+AGG | - | chr4_1:54892157-54892176 | None:intergenic | 35.0% | |
| CAGCATTCCAATGTGAATTG+AGG | - | chr4_1:54888269-54888288 | None:intergenic | 40.0% | |
| TGCGTTAATTAAGGAGAAGG+CGG | + | chr4_1:54888835-54888854 | Msa0556620:five_prime_UTR | 40.0% | |
| ! | TATTGTGAGTTGGACGAACA+AGG | + | chr4_1:54888967-54888986 | Msa0556620:CDS | 40.0% |
| ! | ATTGTGAGTTGGACGAACAA+GGG | + | chr4_1:54888968-54888987 | Msa0556620:CDS | 40.0% |
| TGTTGGATCTACCAAAAACG+AGG | + | chr4_1:54888994-54889013 | Msa0556620:CDS | 40.0% | |
| CTCGAATATTCAGTTGCATC+AGG | - | chr4_1:54889022-54889041 | None:intergenic | 40.0% | |
| ATCAGAGTCTGTATCAGCAA+AGG | - | chr4_1:54889047-54889066 | None:intergenic | 40.0% | |
| AAGATCAAGTGATGCTGAAG+TGG | + | chr4_1:54889081-54889100 | Msa0556620:CDS | 40.0% | |
| ! | GAAGTGGATTCAGAGTTCTT+TGG | + | chr4_1:54889097-54889116 | Msa0556620:CDS | 40.0% |
| TCAGAGTTCTTTGGTGAGAA+TGG | + | chr4_1:54889106-54889125 | Msa0556620:CDS | 40.0% | |
| !! | CAGGACCAAAAGTATCATGA+GGG | - | chr4_1:54889141-54889160 | None:intergenic | 40.0% |
| !! | TCAGGACCAAAAGTATCATG+AGG | - | chr4_1:54889142-54889161 | None:intergenic | 40.0% |
| GACCGACCAGTATATGAAAA+AGG | + | chr4_1:54889231-54889250 | Msa0556620:intron | 40.0% | |
| !! | CAGGGTCCTTTTTCATATAC+TGG | - | chr4_1:54889240-54889259 | None:intergenic | 40.0% |
| CAGTATATGAAAAAGGACCC+TGG | + | chr4_1:54889238-54889257 | Msa0556620:intron | 40.0% | |
| TAACTGGGGACTCTTATCTA+AGG | - | chr4_1:54889336-54889355 | None:intergenic | 40.0% | |
| AACTATGGGTGATGAACAGT+TGG | - | chr4_1:54889603-54889622 | None:intergenic | 40.0% | |
| ATGAATGAACACGCAAAGAG+CGG | - | chr4_1:54889678-54889697 | None:intergenic | 40.0% | |
| TGCTAATCGTCAATTGATGG+CGG | + | chr4_1:54889740-54889759 | Msa0556620:intron | 40.0% | |
| AGAGGAAGTTGACAGATCAT+TGG | + | chr4_1:54889903-54889922 | Msa0556620:CDS | 40.0% | |
| AGAACTTGCAGAGTATGACA+AGG | + | chr4_1:54890015-54890034 | Msa0556620:CDS | 40.0% | |
| ! | CTGTACTGGTGACTTGAAAA+TGG | - | chr4_1:54890100-54890119 | None:intergenic | 40.0% |
| AAGTCACCAGTACAGAAGTA+AGG | + | chr4_1:54890105-54890124 | Msa0556620:CDS | 40.0% | |
| ! | TTTTCGCCTTACTTCTGTAC+TGG | - | chr4_1:54890114-54890133 | None:intergenic | 40.0% |
| AAGACGACGAAAGAAAGTTG+AGG | + | chr4_1:54890138-54890157 | Msa0556620:CDS | 40.0% | |
| !! | GCAAGCAGTTGGTAACAATA+AGG | - | chr4_1:54890273-54890292 | None:intergenic | 40.0% |
| CACATACTTCTCTGAATTGG+CGG | - | chr4_1:54890295-54890314 | None:intergenic | 40.0% | |
| GCACATCACCATGAAGAATA+AGG | - | chr4_1:54890868-54890887 | None:intergenic | 40.0% | |
| CAAAGTCCTACAAATTCTGC+TGG | + | chr4_1:54890902-54890921 | Msa0556620:CDS | 40.0% | |
| ACAAAACTTCTTACGACTGG+TGG | + | chr4_1:54891542-54891561 | Msa0556620:intron | 40.0% | |
| !! | TGACATTGATGATGCACAGA+TGG | + | chr4_1:54891595-54891614 | Msa0556620:intron | 40.0% |
| TGTTCTGATGCATGAACTTC+AGG | + | chr4_1:54891625-54891644 | Msa0556620:CDS | 40.0% | |
| TGAACTTCAGGAGGTGAAAA+TGG | + | chr4_1:54891637-54891656 | Msa0556620:CDS | 40.0% | |
| GTTACAGTCACAACAGATAG+TGG | - | chr4_1:54891925-54891944 | None:intergenic | 40.0% | |
| !! | GTATTACAGTGTCATTTCCC+GGG | + | chr4_1:54892012-54892031 | Msa0556620:three_prime_UTR | 40.0% |
| !! | TATTACAGTGTCATTTCCCG+GGG | + | chr4_1:54892013-54892032 | Msa0556620:three_prime_UTR | 40.0% |
| AAAGTATAGTTCCTCTTCCC+CGG | - | chr4_1:54892033-54892052 | None:intergenic | 40.0% | |
| ! | GGAGTGAGATGATGGTATAG+CGG | - | chr4_1:54888175-54888194 | None:intergenic | 45.0% |
| ATACCATCATCTCACTCCTC+AGG | + | chr4_1:54888177-54888196 | Msa0556620:five_prime_UTR | 45.0% | |
| !! | ATTGGAAGAGAGAGTACCTG+AGG | - | chr4_1:54888196-54888215 | None:intergenic | 45.0% |
| ATGAACGTGCGTGCATGTAT+TGG | - | chr4_1:54888214-54888233 | None:intergenic | 45.0% | |
| AACAGACTCCACCTTAACGA+CGG | - | chr4_1:54888891-54888910 | None:intergenic | 45.0% | |
| ! | GCAAGCCCTCATGATACTTT+TGG | + | chr4_1:54889133-54889152 | Msa0556620:CDS | 45.0% |
| AGATAAGAGTCCCCAGTTAG+AGG | + | chr4_1:54889337-54889356 | Msa0556620:intron | 45.0% | |
| GGAAGTTGACAGATCATTGG+AGG | + | chr4_1:54889906-54889925 | Msa0556620:CDS | 45.0% | |
| ATTTCATCCGACCTCTGATG+TGG | + | chr4_1:54889930-54889949 | Msa0556620:CDS | 45.0% | |
| ! | CATTTTAGACGCCACATCAG+AGG | - | chr4_1:54889944-54889963 | None:intergenic | 45.0% |
| CTCTGATGTGGCGTCTAAAA+TGG | + | chr4_1:54889942-54889961 | Msa0556620:CDS | 45.0% | |
| TGACAAGGTAAAGCATACGG+CGG | + | chr4_1:54890030-54890049 | Msa0556620:CDS | 45.0% | |
| CTGGTGACTTGAAAATGGCA+AGG | - | chr4_1:54890095-54890114 | None:intergenic | 45.0% | |
| TAGCAGCAAGGATACTAACC+CGG | - | chr4_1:54890394-54890413 | None:intergenic | 45.0% | |
| GTGTCAGTGCATTTGAGCAA+AGG | - | chr4_1:54890716-54890735 | None:intergenic | 45.0% | |
| !!! | TGATGCCACTTTTCAGTGTG+CGG | - | chr4_1:54890793-54890812 | None:intergenic | 45.0% |
| TCACGTCCAGAAATGTTTCG+AGG | + | chr4_1:54890819-54890838 | Msa0556620:CDS | 45.0% | |
| CCATTCCCAGCAGAATTTGT+AGG | - | chr4_1:54890911-54890930 | None:intergenic | 45.0% | |
| CCTACAAATTCTGCTGGGAA+TGG | + | chr4_1:54890908-54890927 | Msa0556620:CDS | 45.0% | |
| TTCTGCTGGGAATGGATACA+CGG | + | chr4_1:54890916-54890935 | Msa0556620:CDS | 45.0% | |
| AATGGATACACGGCATCTGT+TGG | + | chr4_1:54890926-54890945 | Msa0556620:CDS | 45.0% | |
| AAGCTTGAAACACAGCTGTC+AGG | - | chr4_1:54891019-54891038 | None:intergenic | 45.0% | |
| GACAGCTGTGTTTCAAGCTT+TGG | + | chr4_1:54891019-54891038 | Msa0556620:CDS | 45.0% | |
| !! | TGAGAGCACTGTTGGTTTGT+TGG | + | chr4_1:54891069-54891088 | Msa0556620:CDS | 45.0% |
| ACTCACATGTTCACCAGAGT+CGG | - | chr4_1:54891131-54891150 | None:intergenic | 45.0% | |
| AAACTTCTTACGACTGGTGG+TGG | + | chr4_1:54891545-54891564 | Msa0556620:intron | 45.0% | |
| TCTGATGCATGAACTTCAGG+AGG | + | chr4_1:54891628-54891647 | Msa0556620:CDS | 45.0% | |
| TCAGGAGGTGAAAATGGAAG+TGG | + | chr4_1:54891643-54891662 | Msa0556620:CDS | 45.0% | |
| TTTCACCTCCTGAAGCTTCT+GGG | - | chr4_1:54891684-54891703 | None:intergenic | 45.0% | |
| ! | TTTTCACCTCCTGAAGCTTC+TGG | - | chr4_1:54891685-54891704 | None:intergenic | 45.0% |
| AGAAGCTTCAGGAGGTGAAA+AGG | + | chr4_1:54891684-54891703 | Msa0556620:CDS | 45.0% | |
| GAAGCTTCAGGAGGTGAAAA+GGG | + | chr4_1:54891685-54891704 | Msa0556620:CDS | 45.0% | |
| GTGAAAAGGGAAGTGGAAGA+AGG | + | chr4_1:54891698-54891717 | Msa0556620:CDS | 45.0% | |
| ACTGATTATCAGGTTCCCCA+GGG | - | chr4_1:54891868-54891887 | None:intergenic | 45.0% | |
| !! | AGTCACAACAGATAGTGGAC+TGG | - | chr4_1:54891920-54891939 | None:intergenic | 45.0% |
| AAGTATAGTTCCTCTTCCCC+GGG | - | chr4_1:54892032-54892051 | None:intergenic | 45.0% | |
| CTGGTTAATATTCGTGCTCC+TGG | + | chr4_1:54892191-54892210 | Msa0556620:three_prime_UTR | 45.0% | |
| ! | GATGATGGTATAGCGGCTGA+TGG | - | chr4_1:54888168-54888187 | None:intergenic | 50.0% |
| GTACCTGAGGAGTGAGATGA+TGG | - | chr4_1:54888183-54888202 | None:intergenic | 50.0% | |
| AAGGAGAAGGCGGAAGAGAA+AGG | + | chr4_1:54888845-54888864 | Msa0556620:five_prime_UTR | 50.0% | |
| ACAGACTCCACCTTAACGAC+GGG | - | chr4_1:54888890-54888909 | None:intergenic | 50.0% | |
| TGGACGAACAAGGGTGATGT+TGG | + | chr4_1:54888977-54888996 | Msa0556620:CDS | 50.0% | |
| ! | TGCATCAGGGTCCTCGTTTT+TGG | - | chr4_1:54889008-54889027 | None:intergenic | 50.0% |
| GTTCTTTGGTGAGAATGGCG+CGG | + | chr4_1:54889111-54889130 | Msa0556620:CDS | 50.0% | |
| TTGGTCCTGAGTTCCGAACA+AGG | + | chr4_1:54889152-54889171 | Msa0556620:CDS | 50.0% | |
| AGTCACCTTGTTCGGAACTC+AGG | - | chr4_1:54889160-54889179 | None:intergenic | 50.0% | |
| CGGTCGCTAACAAATGTCCA+AGG | - | chr4_1:54889216-54889235 | None:intergenic | 50.0% | |
| ATGGGTGATGAACAGTTGGC+TGG | - | chr4_1:54889599-54889618 | None:intergenic | 50.0% | |
| TTAGACGCCACATCAGAGGT+CGG | - | chr4_1:54889940-54889959 | None:intergenic | 50.0% | |
| GTCTGATGCTGATGGCTCTT+TGG | + | chr4_1:54890351-54890370 | Msa0556620:CDS | 50.0% | |
| AGGGAGATCACTACTGCCAA+AGG | - | chr4_1:54890564-54890583 | None:intergenic | 50.0% | |
| !! | GTTCTGAAGGAGCAGCTCAA+AGG | - | chr4_1:54890747-54890766 | None:intergenic | 50.0% |
| TACACGGCATCTGTTGGAGT+TGG | + | chr4_1:54890932-54890951 | Msa0556620:CDS | 50.0% | |
| TGCTGATGTCACCCTCCAAT+CGG | + | chr4_1:54891096-54891115 | Msa0556620:CDS | 50.0% | |
| TCAGGAGGTGAAAAGGGAAG+TGG | + | chr4_1:54891691-54891710 | Msa0556620:CDS | 50.0% | |
| GTTGGAACATGAAGTCCCCT+GGG | + | chr4_1:54891849-54891868 | Msa0556620:CDS | 50.0% | |
| TTGGAACATGAAGTCCCCTG+GGG | + | chr4_1:54891850-54891869 | Msa0556620:CDS | 50.0% | |
| CTGATTATCAGGTTCCCCAG+GGG | - | chr4_1:54891867-54891886 | None:intergenic | 50.0% | |
| ! | CACTGATTATCAGGTTCCCC+AGG | - | chr4_1:54891869-54891888 | None:intergenic | 50.0% |
| ! | GTTGTTTCGTACAAGGCACC+AGG | - | chr4_1:54892212-54892231 | None:intergenic | 50.0% |
| GATGGTATAGCGGCTGATGG+TGG | - | chr4_1:54888165-54888184 | None:intergenic | 55.0% | |
| CATGGCCAATCCCGTCGTTA+AGG | + | chr4_1:54888877-54888896 | Msa0556620:exon | 55.0% | |
| CTCCACCTTAACGACGGGAT+TGG | - | chr4_1:54888885-54888904 | None:intergenic | 55.0% | |
| CTGAATTGGCGGCAAGCAGT+TGG | - | chr4_1:54890284-54890303 | None:intergenic | 55.0% | |
| AGGGTCCGCACACTGAAAAG+TGG | + | chr4_1:54890785-54890804 | Msa0556620:CDS | 55.0% | |
| ACGGCATCTGTTGGAGTTGG+AGG | + | chr4_1:54890935-54890954 | Msa0556620:CDS | 55.0% | |
| TTGGAGGGTGACATCAGCAG+CGG | - | chr4_1:54891095-54891114 | None:intergenic | 55.0% | |
| TTCACCAGAGTCGGCAACCA+AGG | - | chr4_1:54891122-54891141 | None:intergenic | 55.0% | |
| CAATCCCACCCAGAAGCTTC+AGG | + | chr4_1:54891673-54891692 | Msa0556620:CDS | 55.0% | |
| ACCTCCTGAAGCTTCTGGGT+GGG | - | chr4_1:54891680-54891699 | None:intergenic | 55.0% | |
| ! | GCAAAGCTGGTTCAGGTGGT+TGG | + | chr4_1:54891831-54891850 | Msa0556620:CDS | 55.0% |
| GGTTGGAACATGAAGTCCCC+TGG | + | chr4_1:54891848-54891867 | Msa0556620:CDS | 55.0% | |
| !! | AGTGTCATTTCCCGGGGAAG+AGG | + | chr4_1:54892019-54892038 | Msa0556620:three_prime_UTR | 55.0% |
| GGCCAATCCCGTCGTTAAGG+TGG | + | chr4_1:54888880-54888899 | Msa0556620:CDS | 60.0% | |
| TGTCACCCTCCAATCGGCCT+TGG | + | chr4_1:54891102-54891121 | Msa0556620:CDS | 60.0% | |
| GGCAACCAAGGCCGATTGGA+GGG | - | chr4_1:54891110-54891129 | None:intergenic | 60.0% | |
| AGTCGGCAACCAAGGCCGAT+TGG | - | chr4_1:54891114-54891133 | None:intergenic | 60.0% | |
| TCCCACCCAGAAGCTTCAGG+AGG | + | chr4_1:54891676-54891695 | Msa0556620:CDS | 60.0% | |
| CACCTCCTGAAGCTTCTGGG+TGG | - | chr4_1:54891681-54891700 | None:intergenic | 60.0% | |
| ! | GAGCGCAAAGCTGGTTCAGG+TGG | + | chr4_1:54891827-54891846 | Msa0556620:CDS | 60.0% |
| CGGCAACCAAGGCCGATTGG+AGG | - | chr4_1:54891111-54891130 | None:intergenic | 65.0% | |
| !! | TCGGCCTTGGTTGCCGACTC+TGG | + | chr4_1:54891115-54891134 | Msa0556620:CDS | 65.0% |
| ! | AAGCGTGGGGAGCGCAAAGC+TGG | + | chr4_1:54891818-54891837 | Msa0556620:CDS | 65.0% |
| ! | GGGGAGCGCAAAGCTGGTTC+AGG | + | chr4_1:54891824-54891843 | Msa0556620:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54888086 | 54892273 | 54888086 | ID=Msa0556620;Name=Msa0556620 |
| chr4_1 | mRNA | 54888086 | 54892273 | 54888086 | ID=Msa0556620-mRNA-1;Parent=Msa0556620;Name=Msa0556620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=180|1|1|1|0.8|0.66|6|384|472 |
| chr4_1 | exon | 54888086 | 54888198 | 54888086 | ID=Msa0556620-mRNA-1:exon:16288;Parent=Msa0556620-mRNA-1 |
| chr4_1 | exon | 54888811 | 54889173 | 54888811 | ID=Msa0556620-mRNA-1:exon:16289;Parent=Msa0556620-mRNA-1 |
| chr4_1 | exon | 54889901 | 54890214 | 54889901 | ID=Msa0556620-mRNA-1:exon:16290;Parent=Msa0556620-mRNA-1 |
| chr4_1 | exon | 54890341 | 54890394 | 54890341 | ID=Msa0556620-mRNA-1:exon:16291;Parent=Msa0556620-mRNA-1 |
| chr4_1 | exon | 54890666 | 54891144 | 54890666 | ID=Msa0556620-mRNA-1:exon:16292;Parent=Msa0556620-mRNA-1 |
| chr4_1 | exon | 54891614 | 54892273 | 54891614 | ID=Msa0556620-mRNA-1:exon:16293;Parent=Msa0556620-mRNA-1 |
| chr4_1 | five_prime_UTR | 54888086 | 54888198 | 54888086 | ID=Msa0556620-mRNA-1:five_prime_utr;Parent=Msa0556620-mRNA-1 |
| chr4_1 | five_prime_UTR | 54888811 | 54888877 | 54888811 | ID=Msa0556620-mRNA-1:five_prime_utr;Parent=Msa0556620-mRNA-1 |
| chr4_1 | CDS | 54888878 | 54889173 | 54888878 | ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1 |
| chr4_1 | CDS | 54889901 | 54890214 | 54889901 | ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1 |
| chr4_1 | CDS | 54890341 | 54890394 | 54890341 | ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1 |
| chr4_1 | CDS | 54890666 | 54891144 | 54890666 | ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1 |
| chr4_1 | CDS | 54891614 | 54891889 | 54891614 | ID=Msa0556620-mRNA-1:cds;Parent=Msa0556620-mRNA-1 |
| chr4_1 | three_prime_UTR | 54891890 | 54892273 | 54891890 | ID=Msa0556620-mRNA-1:three_prime_utr;Parent=Msa0556620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
