Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652160 | AES90270.2 | 94.068 | 472 | 12 | 1 | 1 | 472 | 29 | 484 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652160 | G7JNM2 | 94.068 | 472 | 12 | 1 | 1 | 472 | 29 | 484 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021320 | Msa0652160 | 0.802957 | 4.384918e-49 | -8.615850e-47 |
| Msa0100600 | Msa0652160 | 0.813352 | 2.673800e-51 | -8.615850e-47 |
| Msa0612040 | Msa0652160 | 0.914622 | 1.544784e-84 | -8.615850e-47 |
| Msa0622230 | Msa0652160 | 0.831704 | 1.435536e-55 | -8.615850e-47 |
| Msa0652160 | Msa0694710 | 0.838209 | 3.294468e-57 | -8.615850e-47 |
| Msa0652160 | Msa0748350 | 0.822628 | 2.140299e-53 | -8.615850e-47 |
| Msa0652160 | Msa0926240 | 0.803579 | 3.259137e-49 | -8.615850e-47 |
| Msa0652160 | Msa0965800 | 0.801925 | 7.154565e-49 | -8.615850e-47 |
| Msa0652160 | Msa1001620 | 0.803560 | 3.289534e-49 | -8.615850e-47 |
| Msa0652160 | Msa1165640 | 0.829321 | 5.494342e-55 | -8.615850e-47 |
| Msa0652160 | Msa1166670 | 0.812814 | 3.507937e-51 | -8.615850e-47 |
| Msa0652160 | Msa1220580 | 0.806515 | 7.925672e-50 | -8.615850e-47 |
| Msa0652160 | Msa1363010 | 0.823153 | 1.614627e-53 | -8.615850e-47 |
| Msa0652160 | Msa1420830 | 0.815908 | 7.262312e-52 | -8.615850e-47 |
| Msa0134580 | Msa0652160 | 0.803020 | 4.255396e-49 | -8.615850e-47 |
| Msa0192050 | Msa0652160 | 0.831391 | 1.713877e-55 | -8.615850e-47 |
| Msa0388250 | Msa0652160 | 0.808547 | 2.935863e-50 | -8.615850e-47 |
| Msa0433630 | Msa0652160 | 0.801773 | 7.685656e-49 | -8.615850e-47 |
| Msa0356640 | Msa0652160 | 0.838771 | 2.359127e-57 | -8.615850e-47 |
| Msa0495620 | Msa0652160 | 0.839666 | 1.382812e-57 | -8.615850e-47 |
| Msa0521510 | Msa0652160 | 0.827078 | 1.908573e-54 | -8.615850e-47 |
| Msa0556620 | Msa0652160 | 0.840923 | 6.490101e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652160 | MtrunA17_Chr4g0045601 | 94.068 | 472 | 12 | 1 | 1 | 472 | 1 | 456 | 0.0 | 913 |
| Msa0652160 | MtrunA17_Chr4g0045591 | 57.586 | 290 | 104 | 5 | 1 | 288 | 1 | 273 | 6.70e-90 | 275 |
| Msa0652160 | MtrunA17_Chr8g0335221 | 33.444 | 302 | 173 | 7 | 25 | 310 | 53 | 342 | 6.96e-41 | 150 |
| Msa0652160 | MtrunA17_Chr7g0215661 | 33.333 | 285 | 165 | 9 | 14 | 290 | 48 | 315 | 2.25e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652160 | AT3G59670.1 | 41.478 | 487 | 221 | 19 | 25 | 472 | 56 | 517 | 2.56e-83 | 266 |
| Msa0652160 | AT4G37440.3 | 35.587 | 281 | 162 | 8 | 24 | 301 | 68 | 332 | 4.17e-38 | 144 |
| Msa0652160 | AT4G37440.2 | 35.587 | 281 | 162 | 8 | 24 | 301 | 68 | 332 | 4.42e-38 | 144 |
| Msa0652160 | AT4G37440.1 | 35.587 | 281 | 162 | 8 | 24 | 301 | 68 | 332 | 9.13e-38 | 144 |
| Msa0652160 | AT3G50040.3 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 4.29e-21 | 95.1 |
| Msa0652160 | AT3G50040.2 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.86e-21 | 95.1 |
| Msa0652160 | AT3G50040.4 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.86e-21 | 95.1 |
| Msa0652160 | AT3G50040.1 | 33.702 | 181 | 105 | 6 | 100 | 273 | 108 | 280 | 6.86e-21 | 95.1 |
Find 126 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAAGTTTGCGTTAATTA+AGG | 0.236636 | 4_3:+59859283 | Msa0652160:five_prime_UTR |
| AGAAAACCTCGAAACATTTC+TGG | 0.246323 | 4_3:-59861281 | None:intergenic |
| CTCTGATGTGGCGTCTAAAA+TGG | 0.252327 | 4_3:+59860398 | Msa0652160:CDS |
| TGAACTTCAGGAGGTGAAAA+TGG | 0.307775 | 4_3:+59862094 | Msa0652160:CDS |
| AGTCTTATTCACTGATTATC+AGG | 0.308225 | 4_3:-59862332 | None:intergenic |
| GACAGCTGTGTTTCAAGCTT+TGG | 0.311111 | 4_3:+59861475 | Msa0652160:CDS |
| TTTCACCTCCTGAAGCTTCT+GGG | 0.320720 | 4_3:-59862138 | None:intergenic |
| CTGTACTGGTGACTTGAAAA+TGG | 0.334286 | 4_3:-59860553 | None:intergenic |
| GTCTGATGCTGATGGCTCTT+TGG | 0.338203 | 4_3:+59860807 | Msa0652160:CDS |
| TGTTCTGATGCATGAACTTC+AGG | 0.338964 | 4_3:+59862082 | Msa0652160:CDS |
| AATTTGCTTGAGTCTTATTT+CGG | 0.351566 | 4_3:-59860422 | None:intergenic |
| TCTGTTCTTGATGAACAAAT+TGG | 0.353691 | 4_3:+59859362 | Msa0652160:CDS |
| GCAAGCCCTCATGATACTTT+TGG | 0.354568 | 4_3:+59859590 | Msa0652160:CDS |
| CAATCCCACCCAGAAGCTTC+AGG | 0.360739 | 4_3:+59862130 | Msa0652160:CDS |
| CTCAATTATATCAGGAATAC+TGG | 0.361289 | 4_3:-59861506 | None:intergenic |
| CCATTCCCAGCAGAATTTGT+AGG | 0.379539 | 4_3:-59861364 | None:intergenic |
| TGAGAGCACTGTTGGTTTGT+TGG | 0.381844 | 4_3:+59861525 | Msa0652160:CDS |
| GGAATTAAAGTCACCTTGTT+CGG | 0.384584 | 4_3:-59859622 | None:intergenic |
| GGGGAGCGCAAAGCTGGTTC+AGG | 0.393635 | 4_3:+59862281 | Msa0652160:CDS |
| TCGGCCTTGGTTGCCGACTC+TGG | 0.398219 | 4_3:+59861571 | Msa0652160:CDS |
| TCAGAGTTCTTTGGTGAGAA+TGG | 0.398241 | 4_3:+59859563 | Msa0652160:CDS |
| TTTGAACAGGTAAACTAAAA+GGG | 0.407879 | 4_3:+59859259 | Msa0652160:intron |
| CTCGAATATTCAGTTGCATC+AGG | 0.409498 | 4_3:-59859476 | None:intergenic |
| TCCTTAATTAACGCAAACTT+TGG | 0.410676 | 4_3:-59859284 | None:intergenic |
| GCACATCACCATGAAGAATA+AGG | 0.413362 | 4_3:-59861321 | None:intergenic |
| ACCTCCTGAAGCTTCTGGGT+GGG | 0.414016 | 4_3:-59862134 | None:intergenic |
| CTGGTTAATATTCGTGCTCC+TGG | 0.419824 | 4_3:+59862648 | Msa0652160:three_prime_UTR |
| TGTCACCCTCCAATCGGCCT+TGG | 0.422704 | 4_3:+59861558 | Msa0652160:CDS |
| AAGGAGAAGGCGGAAGAGAA+AGG | 0.427652 | 4_3:+59859302 | Msa0652160:five_prime_UTR |
| ACAGTGCTCTCAATTATATC+AGG | 0.430041 | 4_3:-59861514 | None:intergenic |
| AGAAGCTTCAGGAGGTGAAA+AGG | 0.432992 | 4_3:+59862141 | Msa0652160:CDS |
| GAAGTGGATTCAGAGTTCTT+TGG | 0.433390 | 4_3:+59859554 | Msa0652160:CDS |
| AGTATTACAGTGTCATTTCC+CGG | 0.434495 | 4_3:+59862468 | Msa0652160:three_prime_UTR |
| AGAGGAAGTTGACAGATCAT+TGG | 0.438955 | 4_3:+59860359 | Msa0652160:CDS |
| TTTAAATAAGATGTCAACTT+GGG | 0.449583 | 4_3:-59862426 | None:intergenic |
| CACTGATTATCAGGTTCCCC+AGG | 0.452914 | 4_3:-59862323 | None:intergenic |
| CAAAGTCCTACAAATTCTGC+TGG | 0.460562 | 4_3:+59861358 | Msa0652160:CDS |
| CCTACAAATTCTGCTGGGAA+TGG | 0.476255 | 4_3:+59861364 | Msa0652160:CDS |
| TCAATTGAAAATGAAGACAT+AGG | 0.478092 | 4_3:-59862547 | None:intergenic |
| AAGCGTGGGGAGCGCAAAGC+TGG | 0.481385 | 4_3:+59862275 | Msa0652160:CDS |
| GATATAATTGAGAGCACTGT+TGG | 0.485330 | 4_3:+59861517 | Msa0652160:CDS |
| GTACCTGAGGAGTGAGATGA+TGG | 0.488743 | 4_3:-59858638 | None:intergenic |
| TTGAACAGGTAAACTAAAAG+GGG | 0.489450 | 4_3:+59859260 | Msa0652160:intron |
| AGTGTCATTTCCCGGGGAAG+AGG | 0.491709 | 4_3:+59862476 | Msa0652160:three_prime_UTR |
| CTCCACCTTAACGACGGGAT+TGG | 0.492548 | 4_3:-59859339 | None:intergenic |
| GTTACAGTCACAACAGATAG+TGG | 0.495932 | 4_3:-59862379 | None:intergenic |
| CATGTCCAATCCCGTCGTTA+AGG | 0.497756 | 4_3:+59859334 | Msa0652160:exon |
| GTTTAAATAAGATGTCAACT+TGG | 0.498408 | 4_3:-59862427 | None:intergenic |
| AAAGTATAGTTCCTCTTCCC+CGG | 0.499685 | 4_3:-59862487 | None:intergenic |
| ACGGCATCTGTTGGAGTTGG+AGG | 0.501116 | 4_3:+59861391 | Msa0652160:CDS |
| AATGGATACACGGCATCTGT+TGG | 0.502595 | 4_3:+59861382 | Msa0652160:CDS |
| GAAGCTTCAGGAGGTGAAAA+GGG | 0.504312 | 4_3:+59862142 | Msa0652160:CDS |
| AAGCTTGAAACACAGCTGTC+AGG | 0.505459 | 4_3:-59861472 | None:intergenic |
| ACATTGAAAATCTACAATGT+AGG | 0.506632 | 4_3:+59861221 | Msa0652160:CDS |
| TCACGTCCAGAAATGTTTCG+AGG | 0.507311 | 4_3:+59861275 | Msa0652160:CDS |
| GGTTGGAACATGAAGTCCCC+TGG | 0.508821 | 4_3:+59862305 | Msa0652160:CDS |
| ATCTGACATGAGAATAGAAA+CGG | 0.514060 | 4_3:-59862186 | None:intergenic |
| AGTCGGCAACCAAGGCCGAT+TGG | 0.521202 | 4_3:-59861567 | None:intergenic |
| TCAGGAGGTGAAAAGGGAAG+TGG | 0.522015 | 4_3:+59862148 | Msa0652160:CDS |
| CACCTCCTGAAGCTTCTGGG+TGG | 0.522706 | 4_3:-59862135 | None:intergenic |
| GCAAAGCTGGTTCAGGTGGT+TGG | 0.527885 | 4_3:+59862288 | Msa0652160:CDS |
| CATTGAAAATCTACAATGTA+GGG | 0.528238 | 4_3:+59861222 | Msa0652160:CDS |
| AGTCACCTTGTTCGGAACTC+AGG | 0.528629 | 4_3:-59859614 | None:intergenic |
| AAGATCAAGTGATGCTGAAG+TGG | 0.528838 | 4_3:+59859538 | Msa0652160:CDS |
| TGCTGATGTCACCCTCCAAT+CGG | 0.529019 | 4_3:+59861552 | Msa0652160:CDS |
| TACACGGCATCTGTTGGAGT+TGG | 0.531038 | 4_3:+59861388 | Msa0652160:CDS |
| AAGTCACCAGTACAGAAGTA+AGG | 0.532646 | 4_3:+59860561 | Msa0652160:CDS |
| GTGAAAAGGGAAGTGGAAGA+AGG | 0.534943 | 4_3:+59862155 | Msa0652160:CDS |
| CTTGTTTCGTACGAGGCACC+AGG | 0.535776 | 4_3:-59862666 | None:intergenic |
| GTATTACAGTGTCATTTCCC+GGG | 0.537443 | 4_3:+59862469 | Msa0652160:three_prime_UTR |
| CGGCAACCAAGGCCGATTGG+AGG | 0.540629 | 4_3:-59861564 | None:intergenic |
| GGCAACCAAGGCCGATTGGA+GGG | 0.541238 | 4_3:-59861563 | None:intergenic |
| GTTTGCGTTAATTAAGGAGA+AGG | 0.542510 | 4_3:+59859289 | Msa0652160:five_prime_UTR |
| TGGACGAACAAGGGTGATGT+TGG | 0.545407 | 4_3:+59859434 | Msa0652160:CDS |
| ACAGACAGAAACACTAAACT+AGG | 0.548970 | 4_3:+59858553 | Msa0652160:five_prime_UTR |
| TCAGGAGGTGAAAATGGAAG+TGG | 0.551172 | 4_3:+59862100 | Msa0652160:CDS |
| GTGTCAGTGCATTTGAGCAA+AGG | 0.557356 | 4_3:-59861169 | None:intergenic |
| GTCCAATCCCGTCGTTAAGG+TGG | 0.558790 | 4_3:+59859337 | Msa0652160:CDS |
| GGAAGTTGACAGATCATTGG+AGG | 0.560199 | 4_3:+59860362 | Msa0652160:CDS |
| ATACCATCATCTCACTCCTC+AGG | 0.566479 | 4_3:+59858635 | Msa0652160:five_prime_UTR |
| ACAGACTCCACCTTAACGAC+GGG | 0.568340 | 4_3:-59859344 | None:intergenic |
| GTTGGAACATGAAGTCCCCT+GGG | 0.571232 | 4_3:+59862306 | Msa0652160:CDS |
| CAATTGAAAATGAAGACATA+GGG | 0.580017 | 4_3:-59862546 | None:intergenic |
| TTCACCAGAGTCGGCAACCA+AGG | 0.581301 | 4_3:-59861575 | None:intergenic |
| GAGCGCAAAGCTGGTTCAGG+TGG | 0.583476 | 4_3:+59862284 | Msa0652160:CDS |
| ACTCACATGTTCACCAGAGT+CGG | 0.590003 | 4_3:-59861584 | None:intergenic |
| GTATGACAAGGTAAAGCATA+CGG | 0.590399 | 4_3:+59860483 | Msa0652160:CDS |
| TATCTCTTGCATGTTACAAG+AGG | 0.590833 | 4_3:-59862611 | None:intergenic |
| ATCAGAGTCTGTATCAGCAA+AGG | 0.596262 | 4_3:-59859501 | None:intergenic |
| AAGTATAGTTCCTCTTCCCC+GGG | 0.600473 | 4_3:-59862486 | None:intergenic |
| TTCTGCTGGGAATGGATACA+CGG | 0.600834 | 4_3:+59861372 | Msa0652160:CDS |
| TTAAATAAGATGTCAACTTG+GGG | 0.601404 | 4_3:-59862425 | None:intergenic |
| GTTCTGAAGGAGCAGCTCAA+AGG | 0.601866 | 4_3:-59861200 | None:intergenic |
| AATAAGAAGTCTGATGCTGA+TGG | 0.604157 | 4_3:+59860799 | Msa0652160:CDS |
| TCGAATATTCAGTTGCATCA+GGG | 0.605831 | 4_3:-59859475 | None:intergenic |
| TATTGTGAGTTGGACGAACA+AGG | 0.606643 | 4_3:+59859424 | Msa0652160:CDS |
| GTGTGAATAAAAGAAAGCGT+GGG | 0.607422 | 4_3:+59862261 | Msa0652160:CDS |
| TTGGTCCTGAGTTCCGAACA+AGG | 0.611859 | 4_3:+59859609 | Msa0652160:CDS |
| CAGATGTTGATATTGTGAGT+TGG | 0.612336 | 4_3:+59859414 | Msa0652160:CDS |
| ACTGATTATCAGGTTCCCCA+GGG | 0.614893 | 4_3:-59862322 | None:intergenic |
| AGGGTCCGCACACTGAAAAG+TGG | 0.615591 | 4_3:+59861241 | Msa0652160:CDS |
| AAAGTCCTACAAATTCTGCT+GGG | 0.619351 | 4_3:+59861359 | Msa0652160:CDS |
| TGCGTTAATTAAGGAGAAGG+CGG | 0.622535 | 4_3:+59859292 | Msa0652160:five_prime_UTR |
| ATTTCATCCGACCTCTGATG+TGG | 0.624861 | 4_3:+59860386 | Msa0652160:CDS |
| TGTGTGAATAAAAGAAAGCG+TGG | 0.625451 | 4_3:+59862260 | Msa0652160:CDS |
| GTTCTTTGGTGAGAATGGCA+CGG | 0.631671 | 4_3:+59859568 | Msa0652160:CDS |
| AACAGACTCCACCTTAACGA+CGG | 0.636006 | 4_3:-59859345 | None:intergenic |
| TCAGGACCAAAAGTATCATG+AGG | 0.639160 | 4_3:-59859596 | None:intergenic |
| TATTACAGTGTCATTTCCCG+GGG | 0.646527 | 4_3:+59862470 | Msa0652160:three_prime_UTR |
| TTAGACGCCACATCAGAGGT+CGG | 0.649299 | 4_3:-59860393 | None:intergenic |
| AAGACGACGAAAGAAAGTTG+AGG | 0.656367 | 4_3:+59860594 | Msa0652160:CDS |
| TGAACAGGTAAACTAAAAGG+GGG | 0.666124 | 4_3:+59859261 | Msa0652160:intron |
| GATGGTATAGCGGCTGATGG+TGG | 0.673515 | 4_3:-59858620 | None:intergenic |
| GATGATGGTATAGCGGCTGA+TGG | 0.675995 | 4_3:-59858623 | None:intergenic |
| CAGGACCAAAAGTATCATGA+GGG | 0.684798 | 4_3:-59859595 | None:intergenic |
| AAAGAAAGTTGAGGATACAA+CGG | 0.687206 | 4_3:+59860603 | Msa0652160:CDS |
| CTGGTGACTTGAAAATGGCA+AGG | 0.692316 | 4_3:-59860548 | None:intergenic |
| TCCCACCCAGAAGCTTCAGG+AGG | 0.699328 | 4_3:+59862133 | Msa0652160:CDS |
| TGTGAATAAAAGAAAGCGTG+GGG | 0.699887 | 4_3:+59862262 | Msa0652160:CDS |
| CTGATTATCAGGTTCCCCAG+GGG | 0.702960 | 4_3:-59862321 | None:intergenic |
| ATTGTGAGTTGGACGAACAA+GGG | 0.703347 | 4_3:+59859425 | Msa0652160:CDS |
| AGAACTTGCAGAGTATGACA+AGG | 0.715284 | 4_3:+59860471 | Msa0652160:CDS |
| GGAGTGAGATGATGGTATAG+CGG | 0.745589 | 4_3:-59858630 | None:intergenic |
| TCTGATGCATGAACTTCAGG+AGG | 0.750934 | 4_3:+59862085 | Msa0652160:CDS |
| TGACAAGGTAAAGCATACGG+CGG | 0.760192 | 4_3:+59860486 | Msa0652160:CDS |
| TTGGAACATGAAGTCCCCTG+GGG | 0.780983 | 4_3:+59862307 | Msa0652160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATATTTTTGATACA+TGG | + | chr4_3:59860315-59860334 | Msa0652160:intron | 10.0% |
| !!! | ACAAAATATATTAATTTTCT+TGG | + | chr4_3:59861921-59861940 | Msa0652160:intron | 10.0% |
| !! | AACAGATTAACAAATTAAAA+GGG | - | chr4_3:59859037-59859056 | None:intergenic | 15.0% |
| !! | AAATGTTTAATATTCAATTC+TGG | + | chr4_3:59859096-59859115 | Msa0652160:intron | 15.0% |
| !! | ATGAAAATTAAACATTTCAT+GGG | - | chr4_3:59859136-59859155 | None:intergenic | 15.0% |
| !! | TATGAAAATTAAACATTTCA+TGG | - | chr4_3:59859137-59859156 | None:intergenic | 15.0% |
| !! | TAAAATTCTTACACAATAAA+TGG | - | chr4_3:59859190-59859209 | None:intergenic | 15.0% |
| !! | TAATTAAAGATTTGCATATT+TGG | - | chr4_3:59859646-59859665 | None:intergenic | 15.0% |
| !! | GAACAGATTAACAAATTAAA+AGG | - | chr4_3:59859038-59859057 | None:intergenic | 20.0% |
| !! | AAATCTTTAATTATCTTCCT+TGG | + | chr4_3:59859653-59859672 | Msa0652160:intron | 20.0% |
| !! | AAATATGCCTATTAACTATT+AGG | - | chr4_3:59859906-59859925 | None:intergenic | 20.0% |
| !! | AGAGTTAGAATAAAAACTAT+GGG | - | chr4_3:59860073-59860092 | None:intergenic | 20.0% |
| !! | AAGAGTTAGAATAAAAACTA+TGG | - | chr4_3:59860074-59860093 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTATATGCTCTTT+TGG | + | chr4_3:59861094-59861113 | Msa0652160:intron | 20.0% |
| !! | GAATCGAAATAAATCATATT+TGG | - | chr4_3:59861689-59861708 | None:intergenic | 20.0% |
| !! | CTTAAAACAACAACTAAAAA+GGG | + | chr4_3:59861958-59861977 | Msa0652160:intron | 20.0% |
| !! | TTTAAATAAGATGTCAACTT+GGG | - | chr4_3:59862429-59862448 | None:intergenic | 20.0% |
| ! | AAGATGATTACATTGAAGAT+AGG | - | chr4_3:59858698-59858717 | None:intergenic | 25.0% |
| !!! | TTGCTTGGTTTTTACATAAT+TGG | + | chr4_3:59858817-59858836 | Msa0652160:intron | 25.0% |
| !!! | TGCTTGGTTTTTACATAATT+GGG | + | chr4_3:59858818-59858837 | Msa0652160:intron | 25.0% |
| ! | AACTGAATTGTGAAATAGAT+TGG | - | chr4_3:59859010-59859029 | None:intergenic | 25.0% |
| !!! | TATGCATTTTGATTTTGAAC+AGG | + | chr4_3:59859246-59859265 | Msa0652160:intron | 25.0% |
| !! | TTTTGAACAGGTAAACTAAA+AGG | + | chr4_3:59859258-59859277 | Msa0652160:intron | 25.0% |
| ! | TTTGAACAGGTAAACTAAAA+GGG | + | chr4_3:59859259-59859278 | Msa0652160:intron | 25.0% |
| !!! | GACTTTTATTTTACTGCATA+TGG | - | chr4_3:59859771-59859790 | None:intergenic | 25.0% |
| ! | ATTCAAGCCTAATAGTTAAT+AGG | + | chr4_3:59859896-59859915 | Msa0652160:intron | 25.0% |
| !! | CGAATTAATTGACTCTAAAA+AGG | - | chr4_3:59860166-59860185 | None:intergenic | 25.0% |
| !! | TCTAGTTAGATTGTGTTTTA+TGG | + | chr4_3:59860231-59860250 | Msa0652160:intron | 25.0% |
| !!! | AATTTGCTTGAGTCTTATTT+CGG | - | chr4_3:59860425-59860444 | None:intergenic | 25.0% |
| !! | TTCACATACTTTTCTGAATT+GGG | - | chr4_3:59860753-59860772 | None:intergenic | 25.0% |
| !! | ATTCACATACTTTTCTGAAT+TGG | - | chr4_3:59860754-59860773 | None:intergenic | 25.0% |
| ! | TTATTCTCTACAGTAAGTAA+AGG | - | chr4_3:59860784-59860803 | None:intergenic | 25.0% |
| ! | TCTTTCACTTTATTAACCTT+TGG | + | chr4_3:59861001-59861020 | Msa0652160:intron | 25.0% |
| ! | GATTACTAGGCAAAATTAAA+GGG | - | chr4_3:59861039-59861058 | None:intergenic | 25.0% |
| ! | TGATTACTAGGCAAAATTAA+AGG | - | chr4_3:59861040-59861059 | None:intergenic | 25.0% |
| ! | TACATCAAAATGTGATTACT+AGG | - | chr4_3:59861052-59861071 | None:intergenic | 25.0% |
| ! | AGCATATAAAAAAACTGTCA+TGG | - | chr4_3:59861090-59861109 | None:intergenic | 25.0% |
| ! | ACATTGAAAATCTACAATGT+AGG | + | chr4_3:59861221-59861240 | Msa0652160:CDS | 25.0% |
| ! | CATTGAAAATCTACAATGTA+GGG | + | chr4_3:59861222-59861241 | Msa0652160:CDS | 25.0% |
| !!! | AATTTTAGCCTTATTCTTCA+TGG | + | chr4_3:59861313-59861332 | Msa0652160:CDS | 25.0% |
| !!! | ATGTGAGTTTTCTAAAAGTA+TGG | + | chr4_3:59861599-59861618 | Msa0652160:intron | 25.0% |
| ! | TCGAAATAAATCATATTTGG+TGG | - | chr4_3:59861686-59861705 | None:intergenic | 25.0% |
| ! | TATTTCGATTCCATATTGAT+AGG | + | chr4_3:59861698-59861717 | Msa0652160:intron | 25.0% |
| ! | CTAACAAATACCTATCAATA+TGG | - | chr4_3:59861711-59861730 | None:intergenic | 25.0% |
| ! | CATATTGATAGGTATTTGTT+AGG | + | chr4_3:59861709-59861728 | Msa0652160:intron | 25.0% |
| ! | TACAAAAGCGACAATTAAAA+AGG | - | chr4_3:59861737-59861756 | None:intergenic | 25.0% |
| !!! | CCTTTTTAGTTGTTGTTTTA+AGG | - | chr4_3:59861960-59861979 | None:intergenic | 25.0% |
| ! | CCTTAAAACAACAACTAAAA+AGG | + | chr4_3:59861957-59861976 | Msa0652160:intron | 25.0% |
| ! | TTAAATAAGATGTCAACTTG+GGG | - | chr4_3:59862428-59862447 | None:intergenic | 25.0% |
| ! | GTTTAAATAAGATGTCAACT+TGG | - | chr4_3:59862430-59862449 | None:intergenic | 25.0% |
| ! | CAATTGAAAATGAAGACATA+GGG | - | chr4_3:59862549-59862568 | None:intergenic | 25.0% |
| ! | TCAATTGAAAATGAAGACAT+AGG | - | chr4_3:59862550-59862569 | None:intergenic | 25.0% |
| !! | TTTTCAATTGATCAGTATAC+CGG | + | chr4_3:59862559-59862578 | Msa0652160:three_prime_UTR | 25.0% |
| TAACTTACCTCAATTCACAT+TGG | + | chr4_3:59858717-59858736 | Msa0652160:intron | 30.0% | |
| ! | GTTGTTAGCTAAATTTTGCT+TGG | + | chr4_3:59858802-59858821 | Msa0652160:intron | 30.0% |
| TTGAACAGGTAAACTAAAAG+GGG | + | chr4_3:59859260-59859279 | Msa0652160:intron | 30.0% | |
| TCCTTAATTAACGCAAACTT+TGG | - | chr4_3:59859287-59859306 | None:intergenic | 30.0% | |
| TCTGTTCTTGATGAACAAAT+TGG | + | chr4_3:59859362-59859381 | Msa0652160:CDS | 30.0% | |
| ! | TCAACATTTTCATAAGACCA+GGG | - | chr4_3:59859715-59859734 | None:intergenic | 30.0% |
| TAACATATTGACCTCTAACT+GGG | - | chr4_3:59859808-59859827 | None:intergenic | 30.0% | |
| TTAACATATTGACCTCTAAC+TGG | - | chr4_3:59859809-59859828 | None:intergenic | 30.0% | |
| TGATGCTTCAGTAAGAAATT+AGG | + | chr4_3:59859977-59859996 | Msa0652160:intron | 30.0% | |
| ATCAAAGCATGCAATATCTA+AGG | - | chr4_3:59860019-59860038 | None:intergenic | 30.0% | |
| TTATGGTGAAGCAAAATTCT+TGG | + | chr4_3:59860248-59860267 | Msa0652160:intron | 30.0% | |
| TGGATTTCCTGTATTAATGT+AGG | + | chr4_3:59860335-59860354 | Msa0652160:intron | 30.0% | |
| ! | CATTTTACCTTAAAAGAGTC+TGG | + | chr4_3:59860517-59860536 | Msa0652160:CDS | 30.0% |
| AAAGAAAGTTGAGGATACAA+CGG | + | chr4_3:59860603-59860622 | Msa0652160:CDS | 30.0% | |
| !!! | CACTATCTTTTTTCCTATCT+CGG | + | chr4_3:59860649-59860668 | Msa0652160:CDS | 30.0% |
| ! | TCACATACTTTTCTGAATTG+GGG | - | chr4_3:59860752-59860771 | None:intergenic | 30.0% |
| TCTTTCATTGAGAGAAAATG+AGG | + | chr4_3:59860920-59860939 | Msa0652160:intron | 30.0% | |
| ! | TTTTCTGTTGAATCAACATG+TGG | - | chr4_3:59861136-59861155 | None:intergenic | 30.0% |
| ! | GTAGATTTTCAATGTTCTGA+AGG | - | chr4_3:59861216-59861235 | None:intergenic | 30.0% |
| CTCAATTATATCAGGAATAC+TGG | - | chr4_3:59861509-59861528 | None:intergenic | 30.0% | |
| !! | TTCTAGTTCTAGTCATAAAC+TGG | - | chr4_3:59861651-59861670 | None:intergenic | 30.0% |
| CGTTGCAATAAATAGTGAAA+GGG | - | chr4_3:59861832-59861851 | None:intergenic | 30.0% | |
| TCGTTGCAATAAATAGTGAA+AGG | - | chr4_3:59861833-59861852 | None:intergenic | 30.0% | |
| CTATTTATTGCAACGAGAAA+AGG | + | chr4_3:59861837-59861856 | Msa0652160:intron | 30.0% | |
| ATCTGACATGAGAATAGAAA+CGG | - | chr4_3:59862189-59862208 | None:intergenic | 30.0% | |
| !! | AGTCTTATTCACTGATTATC+AGG | - | chr4_3:59862335-59862354 | None:intergenic | 30.0% |
| TCAGTACTAAGCTAAAAAAC+CGG | - | chr4_3:59862581-59862600 | None:intergenic | 30.0% | |
| !! | AGATATTCTGAAAGCTTTTC+TGG | + | chr4_3:59862629-59862648 | Msa0652160:three_prime_UTR | 30.0% |
| ! | GACATCTTCCTCTTTTTAAT+TGG | + | chr4_3:59862695-59862714 | Msa0652160:three_prime_UTR | 30.0% |
| CACTTCATCCAATTAAAAAG+AGG | - | chr4_3:59862706-59862725 | None:intergenic | 30.0% | |
| ACAGACAGAAACACTAAACT+AGG | + | chr4_3:59858553-59858572 | Msa0652160:five_prime_UTR | 35.0% | |
| !! | AATCTGTTCTGCTTTTGCAA+TGG | + | chr4_3:59859049-59859068 | Msa0652160:intron | 35.0% |
| TGAACAGGTAAACTAAAAGG+GGG | + | chr4_3:59859261-59859280 | Msa0652160:intron | 35.0% | |
| GCCAAAGTTTGCGTTAATTA+AGG | + | chr4_3:59859283-59859302 | Msa0652160:five_prime_UTR | 35.0% | |
| GTTTGCGTTAATTAAGGAGA+AGG | + | chr4_3:59859289-59859308 | Msa0652160:five_prime_UTR | 35.0% | |
| CAGATGTTGATATTGTGAGT+TGG | + | chr4_3:59859414-59859433 | Msa0652160:CDS | 35.0% | |
| TCGAATATTCAGTTGCATCA+GGG | - | chr4_3:59859478-59859497 | None:intergenic | 35.0% | |
| GGAATTAAAGTCACCTTGTT+CGG | - | chr4_3:59859625-59859644 | None:intergenic | 35.0% | |
| !! | GTCCTTTTTCATATACTGGT+CGG | - | chr4_3:59859693-59859712 | None:intergenic | 35.0% |
| ! | CTCAACATTTTCATAAGACC+AGG | - | chr4_3:59859716-59859735 | None:intergenic | 35.0% |
| AACATATTGACCTCTAACTG+GGG | - | chr4_3:59859807-59859826 | None:intergenic | 35.0% | |
| AGCTAGTTGAAAAGTGAGTA+AGG | + | chr4_3:59859842-59859861 | Msa0652160:intron | 35.0% | |
| TTTCACATGTCATATACAGC+TGG | - | chr4_3:59859949-59859968 | None:intergenic | 35.0% | |
| ATCAATTGACGATTAGCACA+AGG | - | chr4_3:59860194-59860213 | None:intergenic | 35.0% | |
| TTGTGCTAATCGTCAATTGA+TGG | + | chr4_3:59860193-59860212 | Msa0652160:intron | 35.0% | |
| CACAATCTAACTAGATACAG+TGG | - | chr4_3:59860226-59860245 | None:intergenic | 35.0% | |
| TCCTGTATTAATGTAGGAAG+AGG | + | chr4_3:59860341-59860360 | Msa0652160:intron | 35.0% | |
| TCCTCTTCCTACATTAATAC+AGG | - | chr4_3:59860345-59860364 | None:intergenic | 35.0% | |
| GTATGACAAGGTAAAGCATA+CGG | + | chr4_3:59860483-59860502 | Msa0652160:CDS | 35.0% | |
| ! | TTTCGAACCAGACTCTTTTA+AGG | - | chr4_3:59860527-59860546 | None:intergenic | 35.0% |
| AAAAAAGCTCATACCGAGAT+AGG | - | chr4_3:59860665-59860684 | None:intergenic | 35.0% | |
| ! | CACATACTTTTCTGAATTGG+GGG | - | chr4_3:59860751-59860770 | None:intergenic | 35.0% |
| AATAAGAAGTCTGATGCTGA+TGG | + | chr4_3:59860799-59860818 | Msa0652160:CDS | 35.0% | |
| !! | GGATGATGATTTTGACAATC+CGG | + | chr4_3:59860828-59860847 | Msa0652160:CDS | 35.0% |
| !! | GATGATGATTTTGACAATCC+GGG | + | chr4_3:59860829-59860848 | Msa0652160:CDS | 35.0% |
| TTAGCATATCATTAGCAGCA+AGG | - | chr4_3:59860862-59860881 | None:intergenic | 35.0% | |
| !! | ATTTTAACAGCACTAGTGAG+TGG | - | chr4_3:59860889-59860908 | None:intergenic | 35.0% |
| TTCATTGAGAGAAAATGAGG+AGG | + | chr4_3:59860923-59860942 | Msa0652160:intron | 35.0% | |
| ATTCAACTGCATTACGTTTC+TGG | + | chr4_3:59860960-59860979 | Msa0652160:intron | 35.0% | |
| AGAAAACCTCGAAACATTTC+TGG | - | chr4_3:59861284-59861303 | None:intergenic | 35.0% | |
| AAAGTCCTACAAATTCTGCT+GGG | + | chr4_3:59861359-59861378 | Msa0652160:CDS | 35.0% | |
| ACAGTGCTCTCAATTATATC+AGG | - | chr4_3:59861517-59861536 | None:intergenic | 35.0% | |
| !! | GATATAATTGAGAGCACTGT+TGG | + | chr4_3:59861517-59861536 | Msa0652160:CDS | 35.0% |
| AAGACAAAACTTCTTACGAC+TGG | + | chr4_3:59861996-59862015 | Msa0652160:intron | 35.0% | |
| ! | ACGCTTTCTTTTATTCACAC+AGG | - | chr4_3:59862261-59862280 | None:intergenic | 35.0% |
| TGTGTGAATAAAAGAAAGCG+TGG | + | chr4_3:59862260-59862279 | Msa0652160:CDS | 35.0% | |
| ! | GTGTGAATAAAAGAAAGCGT+GGG | + | chr4_3:59862261-59862280 | Msa0652160:CDS | 35.0% |
| ! | TGTGAATAAAAGAAAGCGTG+GGG | + | chr4_3:59862262-59862281 | Msa0652160:CDS | 35.0% |
| !! | AGTATTACAGTGTCATTTCC+CGG | + | chr4_3:59862468-59862487 | Msa0652160:three_prime_UTR | 35.0% |
| TATCTCTTGCATGTTACAAG+AGG | - | chr4_3:59862614-59862633 | None:intergenic | 35.0% | |
| ! | CAAAAAACTTGTTTCGTACG+AGG | - | chr4_3:59862676-59862695 | None:intergenic | 35.0% |
| CAGCATTCCAATGTGAATTG+AGG | - | chr4_3:59858727-59858746 | None:intergenic | 40.0% | |
| TGCGTTAATTAAGGAGAAGG+CGG | + | chr4_3:59859292-59859311 | Msa0652160:five_prime_UTR | 40.0% | |
| ! | TATTGTGAGTTGGACGAACA+AGG | + | chr4_3:59859424-59859443 | Msa0652160:CDS | 40.0% |
| ! | ATTGTGAGTTGGACGAACAA+GGG | + | chr4_3:59859425-59859444 | Msa0652160:CDS | 40.0% |
| TGTTGGATCTACCAAAAACG+AGG | + | chr4_3:59859451-59859470 | Msa0652160:CDS | 40.0% | |
| CTCGAATATTCAGTTGCATC+AGG | - | chr4_3:59859479-59859498 | None:intergenic | 40.0% | |
| ATCAGAGTCTGTATCAGCAA+AGG | - | chr4_3:59859504-59859523 | None:intergenic | 40.0% | |
| AAGATCAAGTGATGCTGAAG+TGG | + | chr4_3:59859538-59859557 | Msa0652160:CDS | 40.0% | |
| ! | GAAGTGGATTCAGAGTTCTT+TGG | + | chr4_3:59859554-59859573 | Msa0652160:CDS | 40.0% |
| TCAGAGTTCTTTGGTGAGAA+TGG | + | chr4_3:59859563-59859582 | Msa0652160:CDS | 40.0% | |
| !! | CAGGACCAAAAGTATCATGA+GGG | - | chr4_3:59859598-59859617 | None:intergenic | 40.0% |
| !! | TCAGGACCAAAAGTATCATG+AGG | - | chr4_3:59859599-59859618 | None:intergenic | 40.0% |
| GACCGACCAGTATATGAAAA+AGG | + | chr4_3:59859688-59859707 | Msa0652160:intron | 40.0% | |
| !! | CAGGGTCCTTTTTCATATAC+TGG | - | chr4_3:59859697-59859716 | None:intergenic | 40.0% |
| CAGTATATGAAAAAGGACCC+TGG | + | chr4_3:59859695-59859714 | Msa0652160:intron | 40.0% | |
| TAACTGGGGACTCTTATCTA+AGG | - | chr4_3:59859793-59859812 | None:intergenic | 40.0% | |
| AACTATGGGTGATGAACAGT+TGG | - | chr4_3:59860059-59860078 | None:intergenic | 40.0% | |
| ATGAATGAACACGCAAAGAG+CGG | - | chr4_3:59860134-59860153 | None:intergenic | 40.0% | |
| TGCTAATCGTCAATTGATGG+CGG | + | chr4_3:59860196-59860215 | Msa0652160:intron | 40.0% | |
| AGAGGAAGTTGACAGATCAT+TGG | + | chr4_3:59860359-59860378 | Msa0652160:CDS | 40.0% | |
| AGAACTTGCAGAGTATGACA+AGG | + | chr4_3:59860471-59860490 | Msa0652160:CDS | 40.0% | |
| ! | CTGTACTGGTGACTTGAAAA+TGG | - | chr4_3:59860556-59860575 | None:intergenic | 40.0% |
| AAGTCACCAGTACAGAAGTA+AGG | + | chr4_3:59860561-59860580 | Msa0652160:CDS | 40.0% | |
| ! | TTTTCGCCTTACTTCTGTAC+TGG | - | chr4_3:59860570-59860589 | None:intergenic | 40.0% |
| AAGACGACGAAAGAAAGTTG+AGG | + | chr4_3:59860594-59860613 | Msa0652160:CDS | 40.0% | |
| !! | GCAAGCAGTTGGTAACAATA+AGG | - | chr4_3:59860729-59860748 | None:intergenic | 40.0% |
| GCACATCACCATGAAGAATA+AGG | - | chr4_3:59861324-59861343 | None:intergenic | 40.0% | |
| CAAAGTCCTACAAATTCTGC+TGG | + | chr4_3:59861358-59861377 | Msa0652160:CDS | 40.0% | |
| ACAAAACTTCTTACGACTGG+TGG | + | chr4_3:59861999-59862018 | Msa0652160:intron | 40.0% | |
| !! | TGACATTGATGATGCACAGA+TGG | + | chr4_3:59862052-59862071 | Msa0652160:intron | 40.0% |
| TGTTCTGATGCATGAACTTC+AGG | + | chr4_3:59862082-59862101 | Msa0652160:CDS | 40.0% | |
| TGAACTTCAGGAGGTGAAAA+TGG | + | chr4_3:59862094-59862113 | Msa0652160:CDS | 40.0% | |
| GTTACAGTCACAACAGATAG+TGG | - | chr4_3:59862382-59862401 | None:intergenic | 40.0% | |
| !! | GTATTACAGTGTCATTTCCC+GGG | + | chr4_3:59862469-59862488 | Msa0652160:three_prime_UTR | 40.0% |
| !! | TATTACAGTGTCATTTCCCG+GGG | + | chr4_3:59862470-59862489 | Msa0652160:three_prime_UTR | 40.0% |
| AAAGTATAGTTCCTCTTCCC+CGG | - | chr4_3:59862490-59862509 | None:intergenic | 40.0% | |
| ! | GGAGTGAGATGATGGTATAG+CGG | - | chr4_3:59858633-59858652 | None:intergenic | 45.0% |
| ATACCATCATCTCACTCCTC+AGG | + | chr4_3:59858635-59858654 | Msa0652160:five_prime_UTR | 45.0% | |
| !! | ATTGGAAGAGAGAGTACCTG+AGG | - | chr4_3:59858654-59858673 | None:intergenic | 45.0% |
| ATGAACGTGCGAGCATGTAT+TGG | - | chr4_3:59858672-59858691 | None:intergenic | 45.0% | |
| AACAGACTCCACCTTAACGA+CGG | - | chr4_3:59859348-59859367 | None:intergenic | 45.0% | |
| GTTCTTTGGTGAGAATGGCA+CGG | + | chr4_3:59859568-59859587 | Msa0652160:CDS | 45.0% | |
| ! | GCAAGCCCTCATGATACTTT+TGG | + | chr4_3:59859590-59859609 | Msa0652160:CDS | 45.0% |
| CGGTCACTAACAAATGTCCA+AGG | - | chr4_3:59859673-59859692 | None:intergenic | 45.0% | |
| AGATAAGAGTCCCCAGTTAG+AGG | + | chr4_3:59859794-59859813 | Msa0652160:intron | 45.0% | |
| GGAAGTTGACAGATCATTGG+AGG | + | chr4_3:59860362-59860381 | Msa0652160:CDS | 45.0% | |
| ATTTCATCCGACCTCTGATG+TGG | + | chr4_3:59860386-59860405 | Msa0652160:CDS | 45.0% | |
| ! | CATTTTAGACGCCACATCAG+AGG | - | chr4_3:59860400-59860419 | None:intergenic | 45.0% |
| CTCTGATGTGGCGTCTAAAA+TGG | + | chr4_3:59860398-59860417 | Msa0652160:CDS | 45.0% | |
| TGACAAGGTAAAGCATACGG+CGG | + | chr4_3:59860486-59860505 | Msa0652160:CDS | 45.0% | |
| CTGGTGACTTGAAAATGGCA+AGG | - | chr4_3:59860551-59860570 | None:intergenic | 45.0% | |
| TAGCAGCAAGGATACTAACC+CGG | - | chr4_3:59860850-59860869 | None:intergenic | 45.0% | |
| GTGTCAGTGCATTTGAGCAA+AGG | - | chr4_3:59861172-59861191 | None:intergenic | 45.0% | |
| !!! | TGATGCCACTTTTCAGTGTG+CGG | - | chr4_3:59861249-59861268 | None:intergenic | 45.0% |
| TCACGTCCAGAAATGTTTCG+AGG | + | chr4_3:59861275-59861294 | Msa0652160:CDS | 45.0% | |
| CCATTCCCAGCAGAATTTGT+AGG | - | chr4_3:59861367-59861386 | None:intergenic | 45.0% | |
| CCTACAAATTCTGCTGGGAA+TGG | + | chr4_3:59861364-59861383 | Msa0652160:CDS | 45.0% | |
| TTCTGCTGGGAATGGATACA+CGG | + | chr4_3:59861372-59861391 | Msa0652160:CDS | 45.0% | |
| AATGGATACACGGCATCTGT+TGG | + | chr4_3:59861382-59861401 | Msa0652160:CDS | 45.0% | |
| AAGCTTGAAACACAGCTGTC+AGG | - | chr4_3:59861475-59861494 | None:intergenic | 45.0% | |
| GACAGCTGTGTTTCAAGCTT+TGG | + | chr4_3:59861475-59861494 | Msa0652160:CDS | 45.0% | |
| !! | TGAGAGCACTGTTGGTTTGT+TGG | + | chr4_3:59861525-59861544 | Msa0652160:CDS | 45.0% |
| ACTCACATGTTCACCAGAGT+CGG | - | chr4_3:59861587-59861606 | None:intergenic | 45.0% | |
| AAACTTCTTACGACTGGTGG+TGG | + | chr4_3:59862002-59862021 | Msa0652160:intron | 45.0% | |
| TCTGATGCATGAACTTCAGG+AGG | + | chr4_3:59862085-59862104 | Msa0652160:CDS | 45.0% | |
| TCAGGAGGTGAAAATGGAAG+TGG | + | chr4_3:59862100-59862119 | Msa0652160:CDS | 45.0% | |
| TTTCACCTCCTGAAGCTTCT+GGG | - | chr4_3:59862141-59862160 | None:intergenic | 45.0% | |
| ! | TTTTCACCTCCTGAAGCTTC+TGG | - | chr4_3:59862142-59862161 | None:intergenic | 45.0% |
| AGAAGCTTCAGGAGGTGAAA+AGG | + | chr4_3:59862141-59862160 | Msa0652160:CDS | 45.0% | |
| GAAGCTTCAGGAGGTGAAAA+GGG | + | chr4_3:59862142-59862161 | Msa0652160:CDS | 45.0% | |
| GTGAAAAGGGAAGTGGAAGA+AGG | + | chr4_3:59862155-59862174 | Msa0652160:CDS | 45.0% | |
| ACTGATTATCAGGTTCCCCA+GGG | - | chr4_3:59862325-59862344 | None:intergenic | 45.0% | |
| AAGTATAGTTCCTCTTCCCC+GGG | - | chr4_3:59862489-59862508 | None:intergenic | 45.0% | |
| CTGGTTAATATTCGTGCTCC+TGG | + | chr4_3:59862648-59862667 | Msa0652160:three_prime_UTR | 45.0% | |
| ! | GATGATGGTATAGCGGCTGA+TGG | - | chr4_3:59858626-59858645 | None:intergenic | 50.0% |
| GTACCTGAGGAGTGAGATGA+TGG | - | chr4_3:59858641-59858660 | None:intergenic | 50.0% | |
| AAGGAGAAGGCGGAAGAGAA+AGG | + | chr4_3:59859302-59859321 | Msa0652160:five_prime_UTR | 50.0% | |
| CATGTCCAATCCCGTCGTTA+AGG | + | chr4_3:59859334-59859353 | Msa0652160:exon | 50.0% | |
| ACAGACTCCACCTTAACGAC+GGG | - | chr4_3:59859347-59859366 | None:intergenic | 50.0% | |
| TGGACGAACAAGGGTGATGT+TGG | + | chr4_3:59859434-59859453 | Msa0652160:CDS | 50.0% | |
| ! | TGCATCAGGGTCCTCGTTTT+TGG | - | chr4_3:59859465-59859484 | None:intergenic | 50.0% |
| TTGGTCCTGAGTTCCGAACA+AGG | + | chr4_3:59859609-59859628 | Msa0652160:CDS | 50.0% | |
| AGTCACCTTGTTCGGAACTC+AGG | - | chr4_3:59859617-59859636 | None:intergenic | 50.0% | |
| ATGGGTGATGAACAGTTGGC+TGG | - | chr4_3:59860055-59860074 | None:intergenic | 50.0% | |
| TTAGACGCCACATCAGAGGT+CGG | - | chr4_3:59860396-59860415 | None:intergenic | 50.0% | |
| GTCTGATGCTGATGGCTCTT+TGG | + | chr4_3:59860807-59860826 | Msa0652160:CDS | 50.0% | |
| AGGGAGATCACTACTGCCAA+AGG | - | chr4_3:59861020-59861039 | None:intergenic | 50.0% | |
| !! | GTTCTGAAGGAGCAGCTCAA+AGG | - | chr4_3:59861203-59861222 | None:intergenic | 50.0% |
| TACACGGCATCTGTTGGAGT+TGG | + | chr4_3:59861388-59861407 | Msa0652160:CDS | 50.0% | |
| TGCTGATGTCACCCTCCAAT+CGG | + | chr4_3:59861552-59861571 | Msa0652160:CDS | 50.0% | |
| TCAGGAGGTGAAAAGGGAAG+TGG | + | chr4_3:59862148-59862167 | Msa0652160:CDS | 50.0% | |
| GTTGGAACATGAAGTCCCCT+GGG | + | chr4_3:59862306-59862325 | Msa0652160:CDS | 50.0% | |
| TTGGAACATGAAGTCCCCTG+GGG | + | chr4_3:59862307-59862326 | Msa0652160:CDS | 50.0% | |
| CTGATTATCAGGTTCCCCAG+GGG | - | chr4_3:59862324-59862343 | None:intergenic | 50.0% | |
| ! | CACTGATTATCAGGTTCCCC+AGG | - | chr4_3:59862326-59862345 | None:intergenic | 50.0% |
| GATGGTATAGCGGCTGATGG+TGG | - | chr4_3:59858623-59858642 | None:intergenic | 55.0% | |
| GTCCAATCCCGTCGTTAAGG+TGG | + | chr4_3:59859337-59859356 | Msa0652160:CDS | 55.0% | |
| CTCCACCTTAACGACGGGAT+TGG | - | chr4_3:59859342-59859361 | None:intergenic | 55.0% | |
| CTGAATTGGGGGCAAGCAGT+TGG | - | chr4_3:59860740-59860759 | None:intergenic | 55.0% | |
| AGGGTCCGCACACTGAAAAG+TGG | + | chr4_3:59861241-59861260 | Msa0652160:CDS | 55.0% | |
| ACGGCATCTGTTGGAGTTGG+AGG | + | chr4_3:59861391-59861410 | Msa0652160:CDS | 55.0% | |
| TTCACCAGAGTCGGCAACCA+AGG | - | chr4_3:59861578-59861597 | None:intergenic | 55.0% | |
| CAATCCCACCCAGAAGCTTC+AGG | + | chr4_3:59862130-59862149 | Msa0652160:CDS | 55.0% | |
| ACCTCCTGAAGCTTCTGGGT+GGG | - | chr4_3:59862137-59862156 | None:intergenic | 55.0% | |
| ! | GCAAAGCTGGTTCAGGTGGT+TGG | + | chr4_3:59862288-59862307 | Msa0652160:CDS | 55.0% |
| GGTTGGAACATGAAGTCCCC+TGG | + | chr4_3:59862305-59862324 | Msa0652160:CDS | 55.0% | |
| !! | AGTGTCATTTCCCGGGGAAG+AGG | + | chr4_3:59862476-59862495 | Msa0652160:three_prime_UTR | 55.0% |
| ! | CTTGTTTCGTACGAGGCACC+AGG | - | chr4_3:59862669-59862688 | None:intergenic | 55.0% |
| TGTCACCCTCCAATCGGCCT+TGG | + | chr4_3:59861558-59861577 | Msa0652160:CDS | 60.0% | |
| GGCAACCAAGGCCGATTGGA+GGG | - | chr4_3:59861566-59861585 | None:intergenic | 60.0% | |
| AGTCGGCAACCAAGGCCGAT+TGG | - | chr4_3:59861570-59861589 | None:intergenic | 60.0% | |
| TCCCACCCAGAAGCTTCAGG+AGG | + | chr4_3:59862133-59862152 | Msa0652160:CDS | 60.0% | |
| CACCTCCTGAAGCTTCTGGG+TGG | - | chr4_3:59862138-59862157 | None:intergenic | 60.0% | |
| ! | GAGCGCAAAGCTGGTTCAGG+TGG | + | chr4_3:59862284-59862303 | Msa0652160:CDS | 60.0% |
| CGGCAACCAAGGCCGATTGG+AGG | - | chr4_3:59861567-59861586 | None:intergenic | 65.0% | |
| !! | TCGGCCTTGGTTGCCGACTC+TGG | + | chr4_3:59861571-59861590 | Msa0652160:CDS | 65.0% |
| ! | AAGCGTGGGGAGCGCAAAGC+TGG | + | chr4_3:59862275-59862294 | Msa0652160:CDS | 65.0% |
| ! | GGGGAGCGCAAAGCTGGTTC+AGG | + | chr4_3:59862281-59862300 | Msa0652160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59858542 | 59862730 | 59858542 | ID=Msa0652160;Name=Msa0652160 |
| chr4_3 | mRNA | 59858542 | 59862730 | 59858542 | ID=Msa0652160-mRNA-1;Parent=Msa0652160;Name=Msa0652160-mRNA-1;_AED=0.19;_eAED=0.19;_QI=182|1|1|1|0.8|0.66|6|384|472 |
| chr4_3 | exon | 59858542 | 59858656 | 59858542 | ID=Msa0652160-mRNA-1:exon:16114;Parent=Msa0652160-mRNA-1 |
| chr4_3 | exon | 59859268 | 59859630 | 59859268 | ID=Msa0652160-mRNA-1:exon:16115;Parent=Msa0652160-mRNA-1 |
| chr4_3 | exon | 59860357 | 59860670 | 59860357 | ID=Msa0652160-mRNA-1:exon:16116;Parent=Msa0652160-mRNA-1 |
| chr4_3 | exon | 59860797 | 59860850 | 59860797 | ID=Msa0652160-mRNA-1:exon:16117;Parent=Msa0652160-mRNA-1 |
| chr4_3 | exon | 59861122 | 59861600 | 59861122 | ID=Msa0652160-mRNA-1:exon:16118;Parent=Msa0652160-mRNA-1 |
| chr4_3 | exon | 59862071 | 59862730 | 59862071 | ID=Msa0652160-mRNA-1:exon:16119;Parent=Msa0652160-mRNA-1 |
| chr4_3 | five_prime_UTR | 59858542 | 59858656 | 59858542 | ID=Msa0652160-mRNA-1:five_prime_utr;Parent=Msa0652160-mRNA-1 |
| chr4_3 | five_prime_UTR | 59859268 | 59859334 | 59859268 | ID=Msa0652160-mRNA-1:five_prime_utr;Parent=Msa0652160-mRNA-1 |
| chr4_3 | CDS | 59859335 | 59859630 | 59859335 | ID=Msa0652160-mRNA-1:cds;Parent=Msa0652160-mRNA-1 |
| chr4_3 | CDS | 59860357 | 59860670 | 59860357 | ID=Msa0652160-mRNA-1:cds;Parent=Msa0652160-mRNA-1 |
| chr4_3 | CDS | 59860797 | 59860850 | 59860797 | ID=Msa0652160-mRNA-1:cds;Parent=Msa0652160-mRNA-1 |
| chr4_3 | CDS | 59861122 | 59861600 | 59861122 | ID=Msa0652160-mRNA-1:cds;Parent=Msa0652160-mRNA-1 |
| chr4_3 | CDS | 59862071 | 59862346 | 59862071 | ID=Msa0652160-mRNA-1:cds;Parent=Msa0652160-mRNA-1 |
| chr4_3 | three_prime_UTR | 59862347 | 59862730 | 59862347 | ID=Msa0652160-mRNA-1:three_prime_utr;Parent=Msa0652160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
