AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625180 MtrunA17_Chr4g0000521 99.313 291 2 0 1 291 1 291 0.0 593
Msa0625180 MtrunA17_Chr8g0341911 32.950 261 143 6 35 284 20 259 1.31e-35 129
Msa0625180 MtrunA17_Chr5g0401861 35.227 264 159 6 27 284 71 328 1.08e-34 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625180 AT3G21215.3 65.273 311 85 1 1 288 1 311 1.84e-127 365
Msa0625180 AT3G21215.2 65.472 307 83 1 1 284 1 307 8.15e-125 360
Msa0625180 AT3G21215.1 65.472 307 83 1 1 284 1 307 8.15e-125 360
Msa0625180 AT3G21215.4 65.472 307 83 1 1 284 1 307 8.15e-125 360
Msa0625180 AT2G42240.4 37.313 268 144 8 24 288 38 284 7.33e-40 141
Msa0625180 AT2G42240.1 36.742 264 143 8 24 284 38 280 1.75e-38 137
Msa0625180 AT2G42240.3 36.502 263 143 8 24 283 38 279 1.98e-37 134
Msa0625180 AT3G13700.2 31.359 287 163 8 7 284 18 279 2.15e-32 121
Msa0625180 AT3G13700.1 29.276 304 163 8 7 283 18 296 1.48e-27 108

Find 210 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATACATTGGTATTT+AGG 0.097707 4_3:-4171225 Msa0625180:three_prime_UTR
CCTTGCAACACCCTGTTTAT+TGG 0.156343 4_3:-4172506 Msa0625180:CDS
CCAATGACTCTATAAGTCTT+TGG 0.208218 4_3:+4169028 None:intergenic
ATCGGTGATTAGAAAATTAA+TGG 0.209037 4_3:-4170955 Msa0625180:three_prime_UTR
AGAAAATTAATGGTTGAAAT+TGG 0.211039 4_3:-4170945 Msa0625180:three_prime_UTR
CTCATACTTTGCATTCAATT+TGG 0.213545 4_3:-4171732 Msa0625180:three_prime_UTR
TCCTCCGCCACCACCTGTTT+GGG 0.218443 4_3:-4174030 Msa0625180:CDS
CTTGCAACACCCTGTTTATT+GGG 0.228971 4_3:-4172505 Msa0625180:CDS
TTGAAGTTAAAACTATTTAA+AGG 0.234294 4_3:-4170755 Msa0625180:three_prime_UTR
TCTCTCTCTTTAACATCTTC+TGG 0.236900 4_3:+4174832 None:intergenic
TGGTATCTGCTTCCAACTTT+AGG 0.243384 4_3:-4171181 Msa0625180:three_prime_UTR
AGGTAAACTACCATCAAATT+TGG 0.247222 4_3:-4170609 Msa0625180:three_prime_UTR
TGGTTTCTCCATTCTGTTGT+AGG 0.248963 4_3:-4171695 Msa0625180:three_prime_UTR
AACCAATATTACTACATTAT+AGG 0.249534 4_3:-4171504 Msa0625180:three_prime_UTR
CCGGATTTACTTCAAAAGTT+AGG 0.257743 4_3:-4175089 Msa0625180:five_prime_UTR
TGGAAGACCCGTTATAAATA+TGG 0.265459 4_3:+4174852 None:intergenic
CGGCGGCGGGAGGCCATTGC+TGG 0.265928 4_3:+4175000 None:intergenic
TCTGTATACATTGGTATTTA+GGG 0.267237 4_3:-4171224 Msa0625180:three_prime_UTR
GGAGAAGTTACAACCTTATA+TGG 0.269549 4_3:-4169118 Msa0625180:three_prime_UTR
CAAATTTAGTTTATGTGAAC+TGG 0.274557 4_3:-4171012 Msa0625180:three_prime_UTR
CAATGACTCTATAAGTCTTT+GGG 0.281588 4_3:+4169029 None:intergenic
AAAGCCATTCTCACCTGAAT+TGG 0.289777 4_3:+4173563 None:intergenic
ATCCTCCGCCACCACCTGTT+TGG 0.292096 4_3:-4174031 Msa0625180:CDS
AACTAAGTATTGGTAAATTC+AGG 0.292403 4_3:-4171835 Msa0625180:three_prime_UTR
ACACTGCCACTCTCCATATA+AGG 0.293581 4_3:+4169105 None:intergenic
TGAAGCAGCCATTGAATTAT+AGG 0.297235 4_3:-4170562 Msa0625180:three_prime_UTR
TTCTTTATTAACCCAGCATC+TGG 0.302266 4_3:-4172007 Msa0625180:three_prime_UTR
TAGTAGTTATGTTCCAATTC+AGG 0.303630 4_3:-4173576 Msa0625180:intron
AAACACCTATGAAACTAATC+TGG 0.306027 4_3:+4171324 None:intergenic
CACCCTGTTTATTGGGAACT+TGG 0.308237 4_3:-4172498 Msa0625180:CDS
TTAAGCAAATGAAGATTATA+AGG 0.318083 4_3:-4172313 Msa0625180:CDS
GTACTTTAGGCGATAAAATA+TGG 0.318453 4_3:-4170985 Msa0625180:three_prime_UTR
CTTCCACAAAAGGGGCTAAT+AGG 0.324527 4_3:+4169063 None:intergenic
GAAGGAATAGCGGTGGGTTG+AGG 0.329734 4_3:+4174966 None:intergenic
TATCAGAAATTCGTAGTCAT+AGG 0.333923 4_3:+4170536 None:intergenic
ATCCTATAATGTAGTAATAT+TGG 0.336175 4_3:+4171502 None:intergenic
TTTGTTTGAAATGTGCTTTA+TGG 0.336993 4_3:-4171259 Msa0625180:three_prime_UTR
ATGAGAGTGGAAAGGGTAGA+TGG 0.339157 4_3:+4171075 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.340502 4_3:+4171788 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.341755 4_3:+4171839 None:intergenic
CTCCCAAGTTCCCAATAAAC+AGG 0.342043 4_3:+4172495 None:intergenic
GGAGGAGGAGCGGCGGCGGG+AGG 0.344741 4_3:+4174990 None:intergenic
GGTGCTGTTATCCCAAGTTC+TGG 0.347584 4_3:-4172120 Msa0625180:CDS
GACAAAGCTTCCTTTCATAA+TGG 0.348216 4_3:-4170688 Msa0625180:three_prime_UTR
AATATCAGACATGCATTTAT+CGG 0.357969 4_3:-4171363 Msa0625180:three_prime_UTR
CCAAAGACTTATAGAGTCAT+TGG 0.366331 4_3:-4169028 Msa0625180:three_prime_UTR
GACGTTCCAACCAAATTTGA+TGG 0.366859 4_3:+4170599 None:intergenic
ATAGCGGTGGGTTGAGGAGG+AGG 0.368075 4_3:+4174972 None:intergenic
AGCAGATACCAATGCCTGTT+TGG 0.374337 4_3:+4171193 None:intergenic
CTAAGTATTGGTAAATTCAA+TGG 0.374747 4_3:-4171782 Msa0625180:three_prime_UTR
GGTTCCCAGATTAGTTTCAT+AGG 0.376752 4_3:-4171329 Msa0625180:three_prime_UTR
AACTGAGGTTTGTGTTGTAT+TGG 0.377082 4_3:-4169139 Msa0625180:three_prime_UTR
AGGAGGAGGAGGAGCGGCGG+CGG 0.380056 4_3:+4174986 None:intergenic
TACTGATAAGTCATTGTTAC+TGG 0.380841 4_3:+4171561 None:intergenic
ATCCCAAGTTCTGGTTCAAT+TGG 0.381310 4_3:-4172111 Msa0625180:CDS
GGAGGCCATTGCTGGTGGTA+AGG 0.381880 4_3:+4175008 None:intergenic
TTATGTTGTCTGATTTATAC+AGG 0.383835 4_3:-4170721 Msa0625180:three_prime_UTR
TAGTTTCATAGGTGTTTAGA+TGG 0.388607 4_3:-4171318 Msa0625180:three_prime_UTR
ACCTACCCTATGGCTGTTCC+TGG 0.389519 4_3:-4171597 Msa0625180:three_prime_UTR
TGCTGCTAAAGATATTCTTC+AGG 0.389765 4_3:-4174701 Msa0625180:CDS
GGCATTGGTACTTGTGCAAC+AGG 0.393304 4_3:+4173620 None:intergenic
TTACTTCAAAAGTTAGGGTT+AGG 0.393352 4_3:-4175083 Msa0625180:five_prime_UTR
TAAGAAAATGCTTCCACAAA+AGG 0.398319 4_3:+4169053 None:intergenic
ATAAAATATGGTGTTATAAT+CGG 0.398468 4_3:-4170973 Msa0625180:three_prime_UTR
TGGCATCATATACATTCATT+TGG 0.402096 4_3:-4171398 Msa0625180:three_prime_UTR
CGGATTTACTTCAAAAGTTA+GGG 0.402484 4_3:-4175088 Msa0625180:five_prime_UTR
AAATATGGCAGTAGCAGAAA+TGG 0.408045 4_3:+4170660 None:intergenic
ATGCCAATTGAACCAGAACT+TGG 0.417682 4_3:+4172108 None:intergenic
ACATTAATGCTGTGATCAAA+TGG 0.423128 4_3:+4170786 None:intergenic
TACCCATGTGGTCCCCAAAC+AGG 0.424369 4_3:+4174017 None:intergenic
GACAAAGTACAAGTTATATT+CGG 0.425671 4_3:+4170864 None:intergenic
GGTTCGAACCATATTTATAA+CGG 0.432197 4_3:-4174860 Msa0625180:CDS
TTTCAAAGCCGAAAAGCCTA+TGG 0.434501 4_3:-4174758 Msa0625180:CDS
CAGTCATAAACCCCAGATGC+TGG 0.438126 4_3:+4171995 None:intergenic
AAACTATTTAAAGGATTCTC+CGG 0.439864 4_3:-4170746 Msa0625180:three_prime_UTR
AAGAAAATGCTTCCACAAAA+GGG 0.443157 4_3:+4169054 None:intergenic
GGAATAGCGGTGGGTTGAGG+AGG 0.444814 4_3:+4174969 None:intergenic
CATTGTTACTGGAGCTCCAT+TGG 0.445747 4_3:+4171572 None:intergenic
TCAATGCCAAAACTAAGTAT+TGG 0.446988 4_3:-4171794 Msa0625180:three_prime_UTR
TCAATGCCAAAACTAAGTAT+TGG 0.446988 4_3:-4171845 Msa0625180:three_prime_UTR
TAGATGGCGTTATCATTTGT+AGG 0.452371 4_3:-4171302 Msa0625180:three_prime_UTR
CCCCAAACAGGTGGTGGCGG+AGG 0.452926 4_3:+4174029 None:intergenic
ACCCTGTTTATTGGGAACTT+GGG 0.453911 4_3:-4172497 Msa0625180:CDS
GTTCGAACCATATTTATAAC+GGG 0.455076 4_3:-4174859 Msa0625180:CDS
TTAGGGATGCTTATCCAAAC+AGG 0.455990 4_3:-4171207 Msa0625180:three_prime_UTR
GAGGCCATTGCTGGTGGTAA+GGG 0.456679 4_3:+4175009 None:intergenic
GGATCATACGGAGGAGGAGG+TGG 0.460265 4_3:+4173656 None:intergenic
GCCATTGCTGGTGGTAAGGG+TGG 0.461353 4_3:+4175012 None:intergenic
GGAGGAGGAGGAGCGGCGGC+GGG 0.463504 4_3:+4174987 None:intergenic
AACCTTTGTCGATGGTTACC+TGG 0.465772 4_3:-4174802 Msa0625180:CDS
TCATACGGAGGAGGAGGTGG+TGG 0.465780 4_3:+4173659 None:intergenic
CAGCATCTGGGGTTTATGAC+TGG 0.465788 4_3:-4171994 Msa0625180:three_prime_UTR
AATTTGGTTGGAACGTCTGT+TGG 0.467457 4_3:-4170593 Msa0625180:three_prime_UTR
GGAACGGCTAGTGGCGTTTG+AGG 0.470913 4_3:+4169167 None:intergenic
GCTGGGGATTATAATCATAC+TGG 0.472133 4_3:-4174077 Msa0625180:CDS
ATCTTCATTTGCTTAAAGCC+AGG 0.474830 4_3:+4172320 None:intergenic
AAACTACCATCAAATTTGGT+TGG 0.478622 4_3:-4170605 Msa0625180:three_prime_UTR
GGCAATGACTTGATAATCAA+TGG 0.478719 4_3:+4171455 None:intergenic
AGTAAACGGTTACGAACAGC+TGG 0.481756 4_3:-4174095 Msa0625180:CDS
GCAACAGGATAGCCTGCATA+TGG 0.482662 4_3:+4173635 None:intergenic
GTGGTAAGGGTGGATGCCGT+TGG 0.484200 4_3:+4175022 None:intergenic
ATGACTTATCAGTAGCTTGA+AGG 0.485263 4_3:-4171552 Msa0625180:three_prime_UTR
ATGGCTGTTCCTGGTGCCAA+TGG 0.485478 4_3:-4171588 Msa0625180:three_prime_UTR
CATTTATCGGCAGCATGTGT+TGG 0.485795 4_3:-4171350 Msa0625180:three_prime_UTR
CAAAAGGGGCTAATAGGATC+TGG 0.486214 4_3:+4169069 None:intergenic
AACACAAACCTCAGTTCTAA+AGG 0.488282 4_3:+4169146 None:intergenic
TGTGGTCCCCAAACAGGTGG+TGG 0.492889 4_3:+4174023 None:intergenic
CCGATGTGAAACGACATTAG+AGG 0.498201 4_3:-4169228 Msa0625180:three_prime_UTR
ACTAAGTATTGGTAAATTCA+GGG 0.498341 4_3:-4171834 Msa0625180:three_prime_UTR
ACAACACATGAACCTAAAGT+TGG 0.498571 4_3:+4171169 None:intergenic
GCAAATGAAGATTATAAGGC+AGG 0.500307 4_3:-4172309 Msa0625180:CDS
TCTTTATTAACCCAGCATCT+GGG 0.500842 4_3:-4172006 Msa0625180:three_prime_UTR
CAAAGACTTATAGAGTCATT+GGG 0.502530 4_3:-4169027 Msa0625180:three_prime_UTR
AATGATAATGAGAGTGGAAA+GGG 0.506100 4_3:+4171068 None:intergenic
ATGCTTATCCAAACAGGCAT+TGG 0.507705 4_3:-4171201 Msa0625180:three_prime_UTR
TGACTTATCAGTAGCTTGAA+GGG 0.508442 4_3:-4171551 Msa0625180:three_prime_UTR
AACATGAGCAGTGATGATAA+TGG 0.512428 4_3:+4171434 None:intergenic
GGTGGTGGCGGAGGATGAAA+AGG 0.515482 4_3:+4174038 None:intergenic
AAATTTAGTTTATGTGAACT+GGG 0.516314 4_3:-4171011 Msa0625180:three_prime_UTR
ATTTGGTATAAAACTGCTTG+TGG 0.517696 4_3:-4171715 Msa0625180:three_prime_UTR
AAATGTGCACCACAATCTGC+AGG 0.517804 4_3:-4172142 Msa0625180:CDS
GCTTTGTAATGCAGACAACC+TGG 0.519392 4_3:-4172338 Msa0625180:intron
AGTACTACCTCTTCGGAAGA+AGG 0.521807 4_3:+4174942 None:intergenic
GCGGTGGGTTGAGGAGGAGG+AGG 0.522344 4_3:+4174975 None:intergenic
GGTCCCCAAACAGGTGGTGG+CGG 0.523992 4_3:+4174026 None:intergenic
CGGCGGGAGGCCATTGCTGG+TGG 0.524594 4_3:+4175003 None:intergenic
ATCAGAAATTCGTAGTCATA+GGG 0.525268 4_3:+4170537 None:intergenic
TCTCCATTCTGTTGTAGGCA+AGG 0.527422 4_3:-4171690 Msa0625180:three_prime_UTR
TGAAGGAAGTACTACCTCTT+CGG 0.528081 4_3:+4174935 None:intergenic
TTGGCACCAGGAACAGCCAT+AGG 0.533854 4_3:+4171591 None:intergenic
TGAATTGGAACATAACTACT+AGG 0.534872 4_3:+4173578 None:intergenic
CCACCTGTTTGGGGACCACA+TGG 0.534905 4_3:-4174020 Msa0625180:CDS
CAAATGGAGTCATGAATGCC+AGG 0.537483 4_3:+4170802 None:intergenic
TCCACCCTTACCACCAGCAA+TGG 0.538447 4_3:-4175013 Msa0625180:CDS
AACTTCAAAACCTTTGTCGA+TGG 0.541598 4_3:-4174810 Msa0625180:CDS
ATAGGGCACCTATAATTCAA+TGG 0.545368 4_3:+4170554 None:intergenic
TGAAGAACAGATTTAGCCTC+GGG 0.546026 4_3:+4174664 None:intergenic
TCCTTCTCCTTCTTCCGAAG+AGG 0.546449 4_3:-4174949 Msa0625180:intron
AAGCTTCCTTTCATAATGGA+AGG 0.546475 4_3:-4170684 Msa0625180:three_prime_UTR
TAGCCTGCATATGGATCATA+CGG 0.548541 4_3:+4173644 None:intergenic
TAAACAGGGTGTTGCAAGGA+GGG 0.548723 4_3:+4172510 None:intergenic
GGTGAGATAGACACAGGAGC+AGG 0.549060 4_3:+4173599 None:intergenic
AGCATCTGGGGTTTATGACT+GGG 0.552350 4_3:-4171993 Msa0625180:three_prime_UTR
CCTCCGCCACCACCTGTTTG+GGG 0.555676 4_3:-4174029 Msa0625180:CDS
AACTGAGAAGCTTCAAAACC+AGG 0.556577 4_3:+4174784 None:intergenic
TTCAAAGCCGAAAAGCCTAT+GGG 0.558458 4_3:-4174757 Msa0625180:CDS
CCTCCGTATGATCCATATGC+AGG 0.559113 4_3:-4173647 Msa0625180:CDS
ATTCCTTGCCTACAACAGAA+TGG 0.560024 4_3:+4171687 None:intergenic
CATTAGAGGCTATTAAAGAA+AGG 0.560405 4_3:-4169214 Msa0625180:three_prime_UTR
ATCTGTTCTTCATACTGAGA+TGG 0.561919 4_3:-4174653 Msa0625180:CDS
GAAGGAGAAGGAATAGCGGT+GGG 0.564113 4_3:+4174960 None:intergenic
AAAAGATGGAACCTACCCTA+TGG 0.564455 4_3:-4171607 Msa0625180:three_prime_UTR
CTTTATTAACCCAGCATCTG+GGG 0.564633 4_3:-4172005 Msa0625180:three_prime_UTR
AACACCTATGAAACTAATCT+GGG 0.566767 4_3:+4171325 None:intergenic
GATTGATTCATGGCAGCCAA+CGG 0.567970 4_3:-4175038 Msa0625180:exon
TAACAGCACCCTGCAGATTG+TGG 0.570755 4_3:+4172133 None:intergenic
CATTAATGAGGAAGAAGTGA+GGG 0.575202 4_3:-4172468 Msa0625180:CDS
ATGAAGAACAGATTTAGCCT+CGG 0.577945 4_3:+4174663 None:intergenic
AGTTCTAAAGGAACGGCTAG+TGG 0.578648 4_3:+4169158 None:intergenic
AATGGACCTTCCATTATGAA+AGG 0.578687 4_3:+4170678 None:intergenic
AGTCATAAACCCCAGATGCT+GGG 0.579970 4_3:+4171996 None:intergenic
TATGGATCATACGGAGGAGG+AGG 0.580137 4_3:+4173653 None:intergenic
ATAGACACAGGAGCAGGCAT+TGG 0.580929 4_3:+4173605 None:intergenic
ACGGCTAGTGGCGTTTGAGG+TGG 0.585872 4_3:+4169170 None:intergenic
CAATGATAATGAGAGTGGAA+AGG 0.592019 4_3:+4171067 None:intergenic
GGCGGAGGATGAAAAGGAGA+CGG 0.593468 4_3:+4174044 None:intergenic
AATGACAATGATAATGAGAG+TGG 0.596480 4_3:+4171062 None:intergenic
AAACCTCAGTTCTAAAGGAA+CGG 0.596528 4_3:+4169151 None:intergenic
ACCTCTTCGGAAGAAGGAGA+AGG 0.602484 4_3:+4174948 None:intergenic
ATTTAGTTTATGTGAACTGG+GGG 0.602858 4_3:-4171009 Msa0625180:three_prime_UTR
CCAATAAACAGGGTGTTGCA+AGG 0.603873 4_3:+4172506 None:intergenic
CTTGGGAGAGAACATTAATG+AGG 0.606113 4_3:-4172480 Msa0625180:CDS
GCATATGGATCATACGGAGG+AGG 0.606969 4_3:+4173650 None:intergenic
TGAAGATTATAAGGCAGGAG+AGG 0.609049 4_3:-4172304 Msa0625180:CDS
TGCCAATTGAACCAGAACTT+GGG 0.610282 4_3:+4172109 None:intergenic
AATTTAGTTTATGTGAACTG+GGG 0.610923 4_3:-4171010 Msa0625180:three_prime_UTR
TTTGTGTTAGTTTACCCATG+TGG 0.614238 4_3:+4174005 None:intergenic
GACTTATCAGTAGCTTGAAG+GGG 0.615446 4_3:-4171550 Msa0625180:three_prime_UTR
TGGCACCAGGAACAGCCATA+GGG 0.617677 4_3:+4171592 None:intergenic
AGAAAATGCTTCCACAAAAG+GGG 0.620217 4_3:+4169055 None:intergenic
ACTGGAGCTCCATTGGCACC+AGG 0.620635 4_3:+4171579 None:intergenic
TTGAAGAGAGCAAAACCCAT+AGG 0.622823 4_3:+4174742 None:intergenic
TAGCCGTTCCTTTAGAACTG+AGG 0.624555 4_3:-4169154 Msa0625180:three_prime_UTR
TTAGCAGCAATAGCTTGATG+AGG 0.625830 4_3:+4174715 None:intergenic
TAAATCAGACAACATAACTC+CGG 0.638333 4_3:+4170727 None:intergenic
AATGACTCTATAAGTCTTTG+GGG 0.646712 4_3:+4169030 None:intergenic
ACATTAATGAGGAAGAAGTG+AGG 0.646735 4_3:-4172469 Msa0625180:CDS
AGAAGGAGAAGGAATAGCGG+TGG 0.646815 4_3:+4174959 None:intergenic
TATGTTGTCTGATTTATACA+GGG 0.651032 4_3:-4170720 Msa0625180:three_prime_UTR
AAACAAATGAAAGAAACTCA+CGG 0.653052 4_3:+4171881 None:intergenic
CCATGTGGTCCCCAAACAGG+TGG 0.654893 4_3:+4174020 None:intergenic
TTACAACCTTATATGGAGAG+TGG 0.656010 4_3:-4169111 Msa0625180:three_prime_UTR
AAATGGAGTCATGAATGCCA+GGG 0.656673 4_3:+4170803 None:intergenic
CCTCTAATGTCGTTTCACAT+CGG 0.664600 4_3:+4169228 None:intergenic
CACCTGTTTGGGGACCACAT+GGG 0.665991 4_3:-4174019 Msa0625180:intron
TGTTTAGAGTAAAACGACAC+CGG 0.666550 4_3:-4175108 Msa0625180:five_prime_UTR
AACCAGGTAACCATCGACAA+AGG 0.666576 4_3:+4174800 None:intergenic
TCCCAAGTTCCCAATAAACA+GGG 0.668529 4_3:+4172496 None:intergenic
GTTCTGGTTCAATTGGCATG+CGG 0.674324 4_3:-4172104 Msa0625180:CDS
CTACTAGGTGAGATAGACAC+AGG 0.679728 4_3:+4173593 None:intergenic
AATGTGCACCACAATCTGCA+GGG 0.681242 4_3:-4172141 Msa0625180:CDS
GTAAACGGTTACGAACAGCT+GGG 0.684153 4_3:-4174094 Msa0625180:CDS
TAAACGGTTACGAACAGCTG+GGG 0.691927 4_3:-4174093 Msa0625180:CDS
TGGAGTCATGAATGCCAGGG+TGG 0.694151 4_3:+4170806 None:intergenic
ATAAACAGGGTGTTGCAAGG+AGG 0.695618 4_3:+4172509 None:intergenic
ACCAGGAACAGCCATAGGGT+AGG 0.709355 4_3:+4171596 None:intergenic
ATTAATGAGGAAGAAGTGAG+GGG 0.716298 4_3:-4172467 Msa0625180:CDS
GGAAGAAGGAGAAGGAATAG+CGG 0.729192 4_3:+4174956 None:intergenic
CCTGCATATGGATCATACGG+AGG 0.734736 4_3:+4173647 None:intergenic
TCATGTTAATGAATGCACAG+TGG 0.853491 4_3:-4171418 Msa0625180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTAATATTTAGATTTT+TGG - chr4_3:4173854-4173873 Msa0625180:intron 10.0%
!!! AAAATGAATAATTTTTCTTA+TGG + chr4_3:4175140-4175159 None:intergenic 10.0%
!!! TTTAACAAATAGATTTTTCT+TGG + chr4_3:4169489-4169508 None:intergenic 15.0%
!!! TCAATTTTTATTCAATTATG+TGG - chr4_3:4169551-4169570 Msa0625180:intron 15.0%
!!! CTTATTTTGATTTTTTTTGT+AGG - chr4_3:4169967-4169986 Msa0625180:intron 15.0%
!! GAAAAAATATGATGTTTAAA+GGG - chr4_3:4171390-4171409 Msa0625180:three_prime_UTR 15.0%
!! TCATTGATAAACAATATTAA+CGG + chr4_3:4171529-4171548 None:intergenic 15.0%
!! ATAAACTAAATTTGAAAAAC+AGG + chr4_3:4173098-4173117 None:intergenic 15.0%
!!! ATAAAATATGGTGTTATAAT+CGG - chr4_3:4173143-4173162 Msa0625180:intron 15.0%
!! TTGAAGTTAAAACTATTTAA+AGG - chr4_3:4173361-4173380 Msa0625180:intron 15.0%
!! AAAAAAAAAAAATCAACTTG+AGG - chr4_3:4174137-4174156 Msa0625180:intron 15.0%
!!! CAATTCAATTATACTTTTTC+AGG - chr4_3:4169235-4169254 Msa0625180:intron 20.0%
!!! AAAAATCTATTTGTTAAACG+AGG - chr4_3:4169491-4169510 Msa0625180:intron 20.0%
!!! TTTAAAATAATCACATGTGT+CGG + chr4_3:4169686-4169705 None:intergenic 20.0%
!! TTTAGACTAAATTATGGTAT+TGG - chr4_3:4169813-4169832 Msa0625180:intron 20.0%
!!! TTGATTTTTTTTGTAGGAAT+AGG - chr4_3:4169973-4169992 Msa0625180:intron 20.0%
!! CAAACTTTCAGTTAATAATA+TGG + chr4_3:4170409-4170428 None:intergenic 20.0%
!!! TGAAAGTTTGTTTGTTTTTA+TGG - chr4_3:4170419-4170438 Msa0625180:intron 20.0%
!! GGAAAAAATATGATGTTTAA+AGG - chr4_3:4171389-4171408 Msa0625180:three_prime_UTR 20.0%
!! TTAAGCAAATGAAGATTATA+AGG - chr4_3:4171803-4171822 Msa0625180:three_prime_UTR 20.0%
!!! TACAATATCCTTTTTTATTG+TGG - chr4_3:4172036-4172055 Msa0625180:three_prime_UTR 20.0%
!!! TCTTTCATTTGTTTTTTCAA+TGG - chr4_3:4172244-4172263 Msa0625180:intron 20.0%
!!! AATTTACCAATACTTAGTTT+TGG + chr4_3:4172280-4172299 None:intergenic 20.0%
!!! TTTTGGCATTGAAAAATATA+AGG + chr4_3:4172314-4172333 None:intergenic 20.0%
!!! AATTTACCAATACTTAGTTT+TGG + chr4_3:4172280-4172299 None:intergenic 20.0%
!! AACCAATATTACTACATTAT+AGG - chr4_3:4172612-4172631 Msa0625180:intron 20.0%
!! ATCCTATAATGTAGTAATAT+TGG + chr4_3:4172617-4172636 None:intergenic 20.0%
!!! AAATTTAGTTTATGTGAACT+GGG - chr4_3:4173105-4173124 Msa0625180:intron 20.0%
!! AGAAAATTAATGGTTGAAAT+TGG - chr4_3:4173171-4173190 Msa0625180:intron 20.0%
!!! TTAGTTTTTTTTGCAAGAAT+TGG - chr4_3:4173614-4173633 Msa0625180:CDS 20.0%
!!! TTTTATCTTACATTAGTGAA+TGG - chr4_3:4174068-4174087 Msa0625180:CDS 20.0%
!! TAATTTACCCTGATATAAAT+GGG + chr4_3:4174571-4174590 None:intergenic 20.0%
!! TATGTTATTCTCACTTAATT+AGG - chr4_3:4174786-4174805 Msa0625180:CDS 20.0%
!! TAGCCTAAATATATATATGA+TGG - chr4_3:4174827-4174846 Msa0625180:CDS 20.0%
!! CAACCATCATATATATATTT+AGG + chr4_3:4174833-4174852 None:intergenic 20.0%
!!! TGTGAATTTTGATTGATTCA+TGG - chr4_3:4169068-4169087 Msa0625180:three_prime_UTR 25.0%
! AAATAATAGAAGAAGAGTGA+AGG + chr4_3:4169201-4169220 None:intergenic 25.0%
! TTTGAATTCAGAGTTAAGTT+TGG + chr4_3:4169908-4169927 None:intergenic 25.0%
!!! TTGCTTTTGATCAAAGTAAA+CGG - chr4_3:4170007-4170026 Msa0625180:intron 25.0%
! AAAACAATGTTGTCAAATAG+TGG - chr4_3:4170201-4170220 Msa0625180:intron 25.0%
!! GTTTTTATGGTCTAGATATA+TGG - chr4_3:4170432-4170451 Msa0625180:intron 25.0%
!! TTAAACTGTTAATGCTACTT+TGG - chr4_3:4170574-4170593 Msa0625180:three_prime_UTR 25.0%
! AAAGTTGGAGTAATTATTGA+GGG + chr4_3:4170849-4170868 None:intergenic 25.0%
! AAAAGTTGGAGTAATTATTG+AGG + chr4_3:4170850-4170869 None:intergenic 25.0%
! TGTCTTTCTCTAATAAAGTA+AGG - chr4_3:4170900-4170919 Msa0625180:three_prime_UTR 25.0%
! GTCTTTCTCTAATAAAGTAA+GGG - chr4_3:4170901-4170920 Msa0625180:three_prime_UTR 25.0%
! ATCAATTTCTAACAGTTGAA+TGG + chr4_3:4171086-4171105 None:intergenic 25.0%
! ATTGTATCTCAAAGTGAATA+TGG - chr4_3:4171181-4171200 Msa0625180:three_prime_UTR 25.0%
! TTGTATCTCAAAGTGAATAT+GGG - chr4_3:4171182-4171201 Msa0625180:three_prime_UTR 25.0%
!!! TCTATTTTAACTACCAAAGA+AGG - chr4_3:4171298-4171317 Msa0625180:three_prime_UTR 25.0%
!!! AACATCATATTTTTTCCAGT+AGG + chr4_3:4171386-4171405 None:intergenic 25.0%
! GATTAATCCAATATATGACA+CGG + chr4_3:4171747-4171766 None:intergenic 25.0%
! ATGAAAAATACATGGTAAGT+TGG + chr4_3:4172201-4172220 None:intergenic 25.0%
! TATCAGTGATGAAAAATACA+TGG + chr4_3:4172209-4172228 None:intergenic 25.0%
! AAACAAATGAAAGAAACTCA+CGG + chr4_3:4172238-4172257 None:intergenic 25.0%
!!! AACTAAGTATTGGTAAATTC+AGG - chr4_3:4172281-4172300 Msa0625180:CDS 25.0%
!!! ACTAAGTATTGGTAAATTCA+GGG - chr4_3:4172282-4172301 Msa0625180:CDS 25.0%
!!! CTAAGTATTGGTAAATTCAA+TGG - chr4_3:4172334-4172353 Msa0625180:intron 25.0%
! AGATATTCCAAAAATCCATT+TGG - chr4_3:4172480-4172499 Msa0625180:CDS 25.0%
!!! TCTTTTTCCAAATGGATTTT+TGG + chr4_3:4172490-4172509 None:intergenic 25.0%
! AATATCAGACATGCATTTAT+CGG - chr4_3:4172753-4172772 Msa0625180:intron 25.0%
!! TTTGTTTGAAATGTGCTTTA+TGG - chr4_3:4172857-4172876 Msa0625180:intron 25.0%
!! TTAGACTTTTCTGTATACAT+TGG - chr4_3:4172883-4172902 Msa0625180:intron 25.0%
! TTCTGTATACATTGGTATTT+AGG - chr4_3:4172891-4172910 Msa0625180:intron 25.0%
! TCTGTATACATTGGTATTTA+GGG - chr4_3:4172892-4172911 Msa0625180:intron 25.0%
!!! TGATGCTTTCTTTATTTTCA+TGG - chr4_3:4172993-4173012 Msa0625180:intron 25.0%
! AACTAAATTTGAAAAACAGG+AGG + chr4_3:4173095-4173114 None:intergenic 25.0%
!! CAAATTTAGTTTATGTGAAC+TGG - chr4_3:4173104-4173123 Msa0625180:intron 25.0%
!! AATTTAGTTTATGTGAACTG+GGG - chr4_3:4173106-4173125 Msa0625180:intron 25.0%
! ATCGGTGATTAGAAAATTAA+TGG - chr4_3:4173161-4173180 Msa0625180:intron 25.0%
! GACAAAGTACAAGTTATATT+CGG + chr4_3:4173255-4173274 None:intergenic 25.0%
! AAACTATTTAAAGGATTCTC+CGG - chr4_3:4173370-4173389 Msa0625180:intron 25.0%
! TTATGTTGTCTGATTTATAC+AGG - chr4_3:4173395-4173414 Msa0625180:intron 25.0%
! TATGTTGTCTGATTTATACA+GGG - chr4_3:4173396-4173415 Msa0625180:intron 25.0%
! AAAAATCACCTGCAAAAATA+TGG + chr4_3:4173474-4173493 None:intergenic 25.0%
!! AGTTTAAAATCATTGATAGC+AGG + chr4_3:4173769-4173788 None:intergenic 25.0%
! AAACAAGTTAGAACAGTTTA+TGG + chr4_3:4173894-4173913 None:intergenic 25.0%
! TATAACTGCTTATATTGCAT+TGG + chr4_3:4174211-4174230 None:intergenic 25.0%
! TATATAGTTATATTAGCGTG+TGG - chr4_3:4174227-4174246 Msa0625180:intron 25.0%
! CTCTAGTTATGTATATTTAG+AGG - chr4_3:4174305-4174324 Msa0625180:intron 25.0%
! AAGATAAACCCATTTATATC+AGG - chr4_3:4174560-4174579 Msa0625180:intron 25.0%
! AGATAAACCCATTTATATCA+GGG - chr4_3:4174561-4174580 Msa0625180:intron 25.0%
! GTAATTTACCCTGATATAAA+TGG + chr4_3:4174572-4174591 None:intergenic 25.0%
!!! TTTTAAGTAAATCTTAGCGA+AGG + chr4_3:4174600-4174619 None:intergenic 25.0%
!! CTTTTGCTTACAAAATTTAG+AGG + chr4_3:4174630-4174649 None:intergenic 25.0%
!!! CAGTTGAAAGGTTTTTTTAT+GGG + chr4_3:4174662-4174681 None:intergenic 25.0%
!!! TCAGTTGAAAGGTTTTTTTA+TGG + chr4_3:4174663-4174682 None:intergenic 25.0%
!! AAAATGTTGATTACCAAAAC+AGG - chr4_3:4174865-4174884 Msa0625180:intron 25.0%
!!! CCTAACTTTTGAAGTAAATC+CGG + chr4_3:4169030-4169049 None:intergenic 30.0%
CGGATTTACTTCAAAAGTTA+GGG - chr4_3:4169028-4169047 Msa0625180:three_prime_UTR 30.0%
TTACTTCAAAAGTTAGGGTT+AGG - chr4_3:4169033-4169052 Msa0625180:three_prime_UTR 30.0%
GGTTCGAACCATATTTATAA+CGG - chr4_3:4169256-4169275 Msa0625180:intron 30.0%
GTTCGAACCATATTTATAAC+GGG - chr4_3:4169257-4169276 Msa0625180:intron 30.0%
CGGTGATTTAGACTAAATTA+TGG - chr4_3:4169807-4169826 Msa0625180:intron 30.0%
TGTTGTGAAATAGTTGCTAT+AGG - chr4_3:4170286-4170305 Msa0625180:intron 30.0%
GTTGTGAAATAGTTGCTATA+GGG - chr4_3:4170287-4170306 Msa0625180:intron 30.0%
TTGTGAAATAGTTGCTATAG+GGG - chr4_3:4170288-4170307 Msa0625180:intron 30.0%
TGAATTGGAACATAACTACT+AGG + chr4_3:4170541-4170560 None:intergenic 30.0%
TAGTAGTTATGTTCCAATTC+AGG - chr4_3:4170540-4170559 Msa0625180:three_prime_UTR 30.0%
GCTCGTGATTTATAAAGATA+AGG - chr4_3:4170653-4170672 Msa0625180:three_prime_UTR 30.0%
CGTGATTTATAAAGATAAGG+CGG - chr4_3:4170656-4170675 Msa0625180:three_prime_UTR 30.0%
ATTACAGAGCTTATAGCTAA+CGG + chr4_3:4170696-4170715 None:intergenic 30.0%
AAGTGACACTCATTATGAAA+CGG + chr4_3:4170750-4170769 None:intergenic 30.0%
!! TTCATAATGAGTGTCACTTT+AGG - chr4_3:4170751-4170770 Msa0625180:three_prime_UTR 30.0%
!! TCATAATGAGTGTCACTTTA+GGG - chr4_3:4170752-4170771 Msa0625180:three_prime_UTR 30.0%
! GAAAATTCTGAGAGAAAAGT+TGG + chr4_3:4170864-4170883 None:intergenic 30.0%
TTGGCACATAGATTAAGAAA+TGG + chr4_3:4170966-4170985 None:intergenic 30.0%
TCTTAATCTATGTGCCAAAA+TGG - chr4_3:4170968-4170987 Msa0625180:three_prime_UTR 30.0%
!!! AGCATTTGTCTTTGTTTTGT+CGG - chr4_3:4171211-4171230 Msa0625180:three_prime_UTR 30.0%
CTTAATTGCTATATTCTGCT+TGG - chr4_3:4171246-4171265 Msa0625180:three_prime_UTR 30.0%
ACATTCATTCAGCAATTTAG+AGG + chr4_3:4171344-4171363 None:intergenic 30.0%
GTTCGAAGTATATTCATAGT+TGG - chr4_3:4171432-4171451 Msa0625180:three_prime_UTR 30.0%
TCACTGCATGATAATAACTA+AGG + chr4_3:4171463-4171482 None:intergenic 30.0%
! GTTTTACATACACACTGAAA+AGG + chr4_3:4171675-4171694 None:intergenic 30.0%
TTGGATTAATCTGTTGAACT+TGG - chr4_3:4171756-4171775 Msa0625180:three_prime_UTR 30.0%
! TATTTGTGCCTTTTATTGTC+TGG - chr4_3:4171880-4171899 Msa0625180:three_prime_UTR 30.0%
GAAAAGATCCAGACAATAAA+AGG + chr4_3:4171891-4171910 None:intergenic 30.0%
CTTATGTTTACGCTAATACT+TGG - chr4_3:4171914-4171933 Msa0625180:three_prime_UTR 30.0%
! GTATTTTTCATCACTGATAC+TGG - chr4_3:4172210-4172229 Msa0625180:intron 30.0%
TCAATGCCAAAACTAAGTAT+TGG - chr4_3:4172271-4172290 Msa0625180:intron 30.0%
TCAATGCCAAAACTAAGTAT+TGG - chr4_3:4172271-4172290 Msa0625180:intron 30.0%
CTCATACTTTGCATTCAATT+TGG - chr4_3:4172384-4172403 Msa0625180:intron 30.0%
ATTTGGTATAAAACTGCTTG+TGG - chr4_3:4172401-4172420 Msa0625180:intron 30.0%
! CCATCTTTTCTTTTTCCAAA+TGG + chr4_3:4172498-4172517 None:intergenic 30.0%
CCATTTGGAAAAAGAAAAGA+TGG - chr4_3:4172495-4172514 Msa0625180:CDS 30.0%
TACTGATAAGTCATTGTTAC+TGG + chr4_3:4172558-4172577 None:intergenic 30.0%
TGGCATCATATACATTCATT+TGG - chr4_3:4172718-4172737 Msa0625180:intron 30.0%
AACACCTATGAAACTAATCT+GGG + chr4_3:4172794-4172813 None:intergenic 30.0%
AAACACCTATGAAACTAATC+TGG + chr4_3:4172795-4172814 None:intergenic 30.0%
TAGTTTCATAGGTGTTTAGA+TGG - chr4_3:4172798-4172817 Msa0625180:intron 30.0%
!!! CTTTCTTTATTTTCATGGCA+TGG - chr4_3:4172998-4173017 Msa0625180:intron 30.0%
! AATGATAATGAGAGTGGAAA+GGG + chr4_3:4173051-4173070 None:intergenic 30.0%
! AATGACAATGATAATGAGAG+TGG + chr4_3:4173057-4173076 None:intergenic 30.0%
! ATTTAGTTTATGTGAACTGG+GGG - chr4_3:4173107-4173126 Msa0625180:intron 30.0%
GTACTTTAGGCGATAAAATA+TGG - chr4_3:4173131-4173150 Msa0625180:intron 30.0%
! GGATCTAGTTTAAAAAGCAT+GGG + chr4_3:4173292-4173311 None:intergenic 30.0%
! TGGATCTAGTTTAAAAAGCA+TGG + chr4_3:4173293-4173312 None:intergenic 30.0%
ACATTAATGCTGTGATCAAA+TGG + chr4_3:4173333-4173352 None:intergenic 30.0%
TAAATCAGACAACATAACTC+CGG + chr4_3:4173392-4173411 None:intergenic 30.0%
AGGTAAACTACCATCAAATT+TGG - chr4_3:4173507-4173526 Msa0625180:intron 30.0%
AAACTACCATCAAATTTGGT+TGG - chr4_3:4173511-4173530 Msa0625180:intron 30.0%
ATCAGAAATTCGTAGTCATA+GGG + chr4_3:4173582-4173601 None:intergenic 30.0%
TATCAGAAATTCGTAGTCAT+AGG + chr4_3:4173583-4173602 None:intergenic 30.0%
GCTAATTATAATACACGTAG+AGG - chr4_3:4173681-4173700 Msa0625180:intron 30.0%
!!! TGCCATCATTTTTTTTGGAT+GGG - chr4_3:4173733-4173752 Msa0625180:intron 30.0%
!!! CACACACTTTTTGAGTTTTA+CGG - chr4_3:4173822-4173841 Msa0625180:intron 30.0%
!! AGATTTTTGGGCATTAAATG+AGG - chr4_3:4173867-4173886 Msa0625180:intron 30.0%
!! GATTTTTGGGCATTAAATGA+GGG - chr4_3:4173868-4173887 Msa0625180:intron 30.0%
CAAATGAAAGAATTGAACAC+TGG + chr4_3:4173957-4173976 None:intergenic 30.0%
ACTATGTCTTGAATTGAAAG+TGG - chr4_3:4174007-4174026 Msa0625180:intron 30.0%
GAATGGTTCATTACTCAAAT+TGG - chr4_3:4174085-4174104 Msa0625180:CDS 30.0%
TGTATATTTAGAGGAATGCT+AGG - chr4_3:4174314-4174333 Msa0625180:intron 30.0%
!! TCTCTAACACTCACTTTTAT+TGG - chr4_3:4174358-4174377 Msa0625180:intron 30.0%
! CTAGCACTCACTATTTTATT+GGG + chr4_3:4174454-4174473 None:intergenic 30.0%
! TCTAGCACTCACTATTTTAT+TGG + chr4_3:4174455-4174474 None:intergenic 30.0%
AAGTCAAGTTCAGTTCAATT+GGG + chr4_3:4174533-4174552 None:intergenic 30.0%
ACAAACAATGTTCAGTTGAA+AGG + chr4_3:4174674-4174693 None:intergenic 30.0%
TCTAAACCTAAAAGGACAAA+CGG + chr4_3:4174722-4174741 None:intergenic 30.0%
AGACTTACTCTAAACCTAAA+AGG + chr4_3:4174730-4174749 None:intergenic 30.0%
CATTAGAGGCTATTAAAGAA+AGG - chr4_3:4174902-4174921 Msa0625180:intron 30.0%
AAGAAAATGCTTCCACAAAA+GGG + chr4_3:4175065-4175084 None:intergenic 30.0%
TAAGAAAATGCTTCCACAAA+AGG + chr4_3:4175066-4175085 None:intergenic 30.0%
AATGACTCTATAAGTCTTTG+GGG + chr4_3:4175089-4175108 None:intergenic 30.0%
CAATGACTCTATAAGTCTTT+GGG + chr4_3:4175090-4175109 None:intergenic 30.0%
CAAAGACTTATAGAGTCATT+GGG - chr4_3:4175089-4175108 Msa0625180:five_prime_UTR 30.0%
! TGTTTAGAGTAAAACGACAC+CGG - chr4_3:4169008-4169027 Msa0625180:three_prime_UTR 35.0%
CCGGATTTACTTCAAAAGTT+AGG - chr4_3:4169027-4169046 Msa0625180:three_prime_UTR 35.0%
TGGAAGACCCGTTATAAATA+TGG + chr4_3:4169267-4169286 None:intergenic 35.0%
TCTCTCTCTTTAACATCTTC+TGG + chr4_3:4169287-4169306 None:intergenic 35.0%
AACTTCAAAACCTTTGTCGA+TGG - chr4_3:4169306-4169325 Msa0625180:intron 35.0%
TGCTGCTAAAGATATTCTTC+AGG - chr4_3:4169415-4169434 Msa0625180:intron 35.0%
ATGAAGAACAGATTTAGCCT+CGG + chr4_3:4169456-4169475 None:intergenic 35.0%
ATCTGTTCTTCATACTGAGA+TGG - chr4_3:4169463-4169482 Msa0625180:intron 35.0%
TTATGTGTCTGTGTCATGTT+TGG - chr4_3:4169729-4169748 Msa0625180:intron 35.0%
TCAACTATGAATCACGTACA+AGG + chr4_3:4169758-4169777 None:intergenic 35.0%
TCTCACAATAAGTGCATGTT+TGG - chr4_3:4169779-4169798 Msa0625180:intron 35.0%
! TAAGTGCATGTTTGGAATGA+CGG - chr4_3:4169787-4169806 Msa0625180:intron 35.0%
CTTGGAGTTTCAACAAATCA+CGG + chr4_3:4169844-4169863 None:intergenic 35.0%
ATTTGAACAAACCTCTACCT+TGG + chr4_3:4169862-4169881 None:intergenic 35.0%
! GTAGAGGTTTGTTCAAATCA+TGG - chr4_3:4169864-4169883 Msa0625180:intron 35.0%
! TTTGTGTTAGTTTACCCATG+TGG + chr4_3:4170114-4170133 None:intergenic 35.0%
CTAATTGCACTGAACAATAG+TGG + chr4_3:4170320-4170339 None:intergenic 35.0%
! AGAAAAACCGATATTTTCCG+CGG - chr4_3:4170338-4170357 Msa0625180:intron 35.0%
GTAATTATTGAGGGCAAAGT+TGG + chr4_3:4170840-4170859 None:intergenic 35.0%
TAATCTATGTGCCAAAATGG+AGG - chr4_3:4170971-4170990 Msa0625180:three_prime_UTR 35.0%
AATCTATGTGCCAAAATGGA+GGG - chr4_3:4170972-4170991 Msa0625180:three_prime_UTR 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + chr4_3:4171008-4171027 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+TGG - chr4_3:4171009-4171028 Msa0625180:three_prime_UTR 35.0%
! GGCTTGATATTTTCTCTTGT+TGG - chr4_3:4171049-4171068 Msa0625180:three_prime_UTR 35.0%
TATCTCAAAGTGAATATGGG+AGG - chr4_3:4171185-4171204 Msa0625180:three_prime_UTR 35.0%
ATCTCAAAGTGAATATGGGA+GGG - chr4_3:4171186-4171205 Msa0625180:three_prime_UTR 35.0%
TGCTTTAATCTTGCCTTCTT+TGG + chr4_3:4171314-4171333 None:intergenic 35.0%
ATGTGTTATGTACATCCTAC+TGG - chr4_3:4171368-4171387 Msa0625180:three_prime_UTR 35.0%
ACATTAATGAGGAAGAAGTG+AGG - chr4_3:4171647-4171666 Msa0625180:three_prime_UTR 35.0%
CATTAATGAGGAAGAAGTGA+GGG - chr4_3:4171648-4171667 Msa0625180:three_prime_UTR 35.0%
ATTAATGAGGAAGAAGTGAG+GGG - chr4_3:4171649-4171668 Msa0625180:three_prime_UTR 35.0%
TTCTATGCCGTGTCATATAT+TGG - chr4_3:4171737-4171756 Msa0625180:three_prime_UTR 35.0%
ATCTTCATTTGCTTAAAGCC+AGG + chr4_3:4171799-4171818 None:intergenic 35.0%
GCAAATGAAGATTATAAGGC+AGG - chr4_3:4171807-4171826 Msa0625180:three_prime_UTR 35.0%
CAGATGCTCCACAATAAAAA+AGG + chr4_3:4172047-4172066 None:intergenic 35.0%
TTCTTTATTAACCCAGCATC+TGG - chr4_3:4172109-4172128 Msa0625180:CDS 35.0%
TCTTTATTAACCCAGCATCT+GGG - chr4_3:4172110-4172129 Msa0625180:CDS 35.0%
ATGACTTATCAGTAGCTTGA+AGG - chr4_3:4172564-4172583 Msa0625180:intron 35.0%
TGACTTATCAGTAGCTTGAA+GGG - chr4_3:4172565-4172584 Msa0625180:intron 35.0%
! GGCAATGACTTGATAATCAA+TGG + chr4_3:4172664-4172683 None:intergenic 35.0%
AACATGAGCAGTGATGATAA+TGG + chr4_3:4172685-4172704 None:intergenic 35.0%
TCATGTTAATGAATGCACAG+TGG - chr4_3:4172698-4172717 Msa0625180:intron 35.0%
TAGATGGCGTTATCATTTGT+AGG - chr4_3:4172814-4172833 Msa0625180:intron 35.0%
ACAACACATGAACCTAAAGT+TGG + chr4_3:4172950-4172969 None:intergenic 35.0%
! CAATGATAATGAGAGTGGAA+AGG + chr4_3:4173052-4173071 None:intergenic 35.0%
AAAACAGGAGGCTAAAAAAG+TGG + chr4_3:4173083-4173102 None:intergenic 35.0%
! TTTTTAAACTAGATCCACCC+TGG - chr4_3:4173296-4173315 Msa0625180:intron 35.0%
GACAAAGCTTCCTTTCATAA+TGG - chr4_3:4173428-4173447 Msa0625180:intron 35.0%
! AAGCTTCCTTTCATAATGGA+AGG - chr4_3:4173432-4173451 Msa0625180:intron 35.0%
AATGGACCTTCCATTATGAA+AGG + chr4_3:4173441-4173460 None:intergenic 35.0%
AAATATGGCAGTAGCAGAAA+TGG + chr4_3:4173459-4173478 None:intergenic 35.0%
TGAAGCAGCCATTGAATTAT+AGG - chr4_3:4173554-4173573 Msa0625180:intron 35.0%
! ATAGGGCACCTATAATTCAA+TGG + chr4_3:4173565-4173584 None:intergenic 35.0%
TTTGTTTGTGTAGAAGTGAC+TGG - chr4_3:4173655-4173674 Msa0625180:CDS 35.0%
AGAGGATAATAGAGTCATTG+TGG - chr4_3:4173699-4173718 Msa0625180:intron 35.0%
GAGGATAATAGAGTCATTGT+GGG - chr4_3:4173700-4173719 Msa0625180:intron 35.0%
AGGATAATAGAGTCATTGTG+GGG - chr4_3:4173701-4173720 Msa0625180:intron 35.0%
AAAAAAATGATGGCAGGATG+AGG + chr4_3:4173728-4173747 None:intergenic 35.0%
!!! CATCCTGCCATCATTTTTTT+TGG - chr4_3:4173728-4173747 Msa0625180:intron 35.0%
CATCCAAAAAAAATGATGGC+AGG + chr4_3:4173734-4173753 None:intergenic 35.0%
!!! CTGCCATCATTTTTTTTGGA+TGG - chr4_3:4173732-4173751 Msa0625180:intron 35.0%
TGCCCATCCAAAAAAAATGA+TGG + chr4_3:4173738-4173757 None:intergenic 35.0%
!!! ACACTTTTTGAGTTTTACGG+TGG - chr4_3:4173825-4173844 Msa0625180:intron 35.0%
AGTGGTAGTATTCTTGCAAA+TGG - chr4_3:4174025-4174044 Msa0625180:CDS 35.0%
TTATTGGGTGGTATCAATGT+AGG + chr4_3:4174439-4174458 None:intergenic 35.0%
GAAGTCAAGTTCAGTTCAAT+TGG + chr4_3:4174534-4174553 None:intergenic 35.0%
! GTTTAGAGTAAGTCTTGCTT+TGG - chr4_3:4174735-4174754 Msa0625180:CDS 35.0%
!! AAACCTCAGTTCTAAAGGAA+CGG + chr4_3:4174968-4174987 None:intergenic 35.0%
! AACACAAACCTCAGTTCTAA+AGG + chr4_3:4174973-4174992 None:intergenic 35.0%
AACTGAGGTTTGTGTTGTAT+TGG - chr4_3:4174977-4174996 Msa0625180:CDS 35.0%
GGAGAAGTTACAACCTTATA+TGG - chr4_3:4174998-4175017 Msa0625180:CDS 35.0%
TTACAACCTTATATGGAGAG+TGG - chr4_3:4175005-4175024 Msa0625180:CDS 35.0%
AGAAAATGCTTCCACAAAAG+GGG + chr4_3:4175064-4175083 None:intergenic 35.0%
CCAATGACTCTATAAGTCTT+TGG + chr4_3:4175091-4175110 None:intergenic 35.0%
CCAAAGACTTATAGAGTCAT+TGG - chr4_3:4175088-4175107 Msa0625180:five_prime_UTR 35.0%
!! TGAAGGAAGTACTACCTCTT+CGG + chr4_3:4169184-4169203 None:intergenic 40.0%
AACTGAGAAGCTTCAAAACC+AGG + chr4_3:4169335-4169354 None:intergenic 40.0%
TTTCAAAGCCGAAAAGCCTA+TGG - chr4_3:4169358-4169377 Msa0625180:intron 40.0%
TTCAAAGCCGAAAAGCCTAT+GGG - chr4_3:4169359-4169378 Msa0625180:intron 40.0%
! AGCAAAACCCATAGGCTTTT+CGG + chr4_3:4169369-4169388 None:intergenic 40.0%
TTGAAGAGAGCAAAACCCAT+AGG + chr4_3:4169377-4169396 None:intergenic 40.0%
TTAGCAGCAATAGCTTGATG+AGG + chr4_3:4169404-4169423 None:intergenic 40.0%
TGAAGAACAGATTTAGCCTC+GGG + chr4_3:4169455-4169474 None:intergenic 40.0%
TGTCAATGTCGGTATTGTGA+AGG + chr4_3:4169633-4169652 None:intergenic 40.0%
!! ATCAGCAGAAGTGTCAATGT+CGG + chr4_3:4169644-4169663 None:intergenic 40.0%
!! CGTGATTTGTTGAAACTCCA+AGG - chr4_3:4169842-4169861 Msa0625180:intron 40.0%
TTGTTGAAACTCCAAGGTAG+AGG - chr4_3:4169848-4169867 Msa0625180:intron 40.0%
GCTGGGGATTATAATCATAC+TGG - chr4_3:4170039-4170058 Msa0625180:intron 40.0%
CACACACACACATATAGATG+AGG + chr4_3:4170137-4170156 None:intergenic 40.0%
TAGCCTGCATATGGATCATA+CGG + chr4_3:4170475-4170494 None:intergenic 40.0%
TGTTCCAATTCAGGTGAGAA+TGG - chr4_3:4170549-4170568 Msa0625180:three_prime_UTR 40.0%
AAAGCCATTCTCACCTGAAT+TGG + chr4_3:4170556-4170575 None:intergenic 40.0%
GACACTCATTGTGAAATGGA+GGG - chr4_3:4171013-4171032 Msa0625180:three_prime_UTR 40.0%
AATGGAGGGAGTAGTTGAAA+AGG - chr4_3:4171027-4171046 Msa0625180:three_prime_UTR 40.0%
ATGGAGGGAGTAGTTGAAAA+GGG - chr4_3:4171028-4171047 Msa0625180:three_prime_UTR 40.0%
TCTCAAAGTGAATATGGGAG+GGG - chr4_3:4171187-4171206 Msa0625180:three_prime_UTR 40.0%
CTTGCAACACCCTGTTTATT+GGG - chr4_3:4171611-4171630 Msa0625180:three_prime_UTR 40.0%
ACCCTGTTTATTGGGAACTT+GGG - chr4_3:4171619-4171638 Msa0625180:three_prime_UTR 40.0%
TCCCAAGTTCCCAATAAACA+GGG + chr4_3:4171623-4171642 None:intergenic 40.0%
CTTGGGAGAGAACATTAATG+AGG - chr4_3:4171636-4171655 Msa0625180:three_prime_UTR 40.0%
CAGCTCTTCTGTTCAGTTTA+TGG - chr4_3:4171708-4171727 Msa0625180:three_prime_UTR 40.0%
TGAAGATTATAAGGCAGGAG+AGG - chr4_3:4171812-4171831 Msa0625180:three_prime_UTR 40.0%
GGTATCCAATAACCTATTGC+AGG - chr4_3:4171935-4171954 Msa0625180:three_prime_UTR 40.0%
CACATCCTGCAATAGGTTAT+TGG + chr4_3:4171943-4171962 None:intergenic 40.0%
CACTATTCACATCCTGCAAT+AGG + chr4_3:4171950-4171969 None:intergenic 40.0%
!! ATCCCAAGTTCTGGTTCAAT+TGG - chr4_3:4172005-4172024 Msa0625180:three_prime_UTR 40.0%
TGCCAATTGAACCAGAACTT+GGG + chr4_3:4172010-4172029 None:intergenic 40.0%
ATGCCAATTGAACCAGAACT+TGG + chr4_3:4172011-4172030 None:intergenic 40.0%
CTTTATTAACCCAGCATCTG+GGG - chr4_3:4172111-4172130 Msa0625180:CDS 40.0%
TGGTTTCTCCATTCTGTTGT+AGG - chr4_3:4172421-4172440 Msa0625180:intron 40.0%
ATTCCTTGCCTACAACAGAA+TGG + chr4_3:4172432-4172451 None:intergenic 40.0%
AAAAGATGGAACCTACCCTA+TGG - chr4_3:4172509-4172528 Msa0625180:CDS 40.0%
GACTTATCAGTAGCTTGAAG+GGG - chr4_3:4172566-4172585 Msa0625180:intron 40.0%
!! GGTTCCCAGATTAGTTTCAT+AGG - chr4_3:4172787-4172806 Msa0625180:intron 40.0%
TGGTATCTGCTTCCAACTTT+AGG - chr4_3:4172935-4172954 Msa0625180:intron 40.0%
AAATGGAGTCATGAATGCCA+GGG + chr4_3:4173316-4173335 None:intergenic 40.0%
!! TGCTACTGCCATATTTTTGC+AGG - chr4_3:4173463-4173482 Msa0625180:intron 40.0%
!! GCAGGTGATTTTTGTTTGCA+CGG - chr4_3:4173481-4173500 Msa0625180:intron 40.0%
!! CAGGTGATTTTTGTTTGCAC+GGG - chr4_3:4173482-4173501 Msa0625180:intron 40.0%
!! GATTTTTGTTTGCACGGGTA+AGG - chr4_3:4173487-4173506 Msa0625180:intron 40.0%
GACGTTCCAACCAAATTTGA+TGG + chr4_3:4173520-4173539 None:intergenic 40.0%
AATTTGGTTGGAACGTCTGT+TGG - chr4_3:4173523-4173542 Msa0625180:intron 40.0%
TTTGTGTAGAAGTGACTGGT+AGG - chr4_3:4173659-4173678 Msa0625180:CDS 40.0%
ATCACAGTAGACATTTGACG+AGG - chr4_3:4174184-4174203 Msa0625180:intron 40.0%
!! GACGACTCTAGAAACTTTTC+TGG + chr4_3:4174265-4174284 None:intergenic 40.0%
! ATGCTAGGAACACTCTCTTT+TGG - chr4_3:4174329-4174348 Msa0625180:intron 40.0%
TATGTCCCACCACTTTATGT+GGG - chr4_3:4174393-4174412 Msa0625180:intron 40.0%
GAAATGGAACCCACATAAAG+TGG + chr4_3:4174405-4174424 None:intergenic 40.0%
ATCAATGTAGGACACCACTT+TGG + chr4_3:4174427-4174446 None:intergenic 40.0%
! GCACTCACTATTTTATTGGG+TGG + chr4_3:4174451-4174470 None:intergenic 40.0%
GTTCAGTTCAATTGGGACTT+GGG + chr4_3:4174526-4174545 None:intergenic 40.0%
AGTTCAGTTCAATTGGGACT+TGG + chr4_3:4174527-4174546 None:intergenic 40.0%
GGACAAACGGTTGTTGAAAA+TGG + chr4_3:4174709-4174728 None:intergenic 40.0%
! CAACAACCGTTTGTCCTTTT+AGG - chr4_3:4174713-4174732 Msa0625180:CDS 40.0%
! CCTCTAATGTCGTTTCACAT+CGG + chr4_3:4174891-4174910 None:intergenic 40.0%
! GATTGATTCATGGCAGCCAA+CGG - chr4_3:4169078-4169097 Msa0625180:three_prime_UTR 45.0%
GGAAGAAGGAGAAGGAATAG+CGG + chr4_3:4169163-4169182 None:intergenic 45.0%
AGTACTACCTCTTCGGAAGA+AGG + chr4_3:4169177-4169196 None:intergenic 45.0%
AACCTTTGTCGATGGTTACC+TGG - chr4_3:4169314-4169333 Msa0625180:intron 45.0%
AACCAGGTAACCATCGACAA+AGG + chr4_3:4169319-4169338 None:intergenic 45.0%
!! GGATATGCTTTTTGATCCCG+AGG - chr4_3:4169436-4169455 Msa0625180:intron 45.0%
GACATTGACACTTCTGCTGA+TGG - chr4_3:4169643-4169662 Msa0625180:intron 45.0%
AGTAAACGGTTACGAACAGC+TGG - chr4_3:4170021-4170040 Msa0625180:intron 45.0%
GTAAACGGTTACGAACAGCT+GGG - chr4_3:4170022-4170041 Msa0625180:intron 45.0%
TAAACGGTTACGAACAGCTG+GGG - chr4_3:4170023-4170042 Msa0625180:intron 45.0%
TTGCAGACCGCGGAAAATAT+CGG + chr4_3:4170348-4170367 None:intergenic 45.0%
ATGTTGACAATTGCAGACCG+CGG + chr4_3:4170358-4170377 None:intergenic 45.0%
CTACTAGGTGAGATAGACAC+AGG + chr4_3:4170526-4170545 None:intergenic 45.0%
GAGCTCAAAATTGCACACGA+AGG + chr4_3:4170637-4170656 None:intergenic 45.0%
! TTGTCTTTCGCCCTCCATTT+TGG + chr4_3:4170985-4171004 None:intergenic 45.0%
CGACACTCATTGTGAAATGG+AGG - chr4_3:4171012-4171031 Msa0625180:three_prime_UTR 45.0%
ACTGTCCTTGAAGTCCTGAA+CGG - chr4_3:4171140-4171159 Msa0625180:three_prime_UTR 45.0%
!! TAAACAGGGTGTTGCAAGGA+GGG + chr4_3:4171609-4171628 None:intergenic 45.0%
!! ATAAACAGGGTGTTGCAAGG+AGG + chr4_3:4171610-4171629 None:intergenic 45.0%
!! CCAATAAACAGGGTGTTGCA+AGG + chr4_3:4171613-4171632 None:intergenic 45.0%
CCTTGCAACACCCTGTTTAT+TGG - chr4_3:4171610-4171629 Msa0625180:three_prime_UTR 45.0%
CACCCTGTTTATTGGGAACT+TGG - chr4_3:4171618-4171637 Msa0625180:three_prime_UTR 45.0%
CTCCCAAGTTCCCAATAAAC+AGG + chr4_3:4171624-4171643 None:intergenic 45.0%
GAACAGAAGAGCTGTGTCAA+AGG + chr4_3:4171702-4171721 None:intergenic 45.0%
GCTTTGTAATGCAGACAACC+TGG - chr4_3:4171778-4171797 Msa0625180:three_prime_UTR 45.0%
AAATGTGCACCACAATCTGC+AGG - chr4_3:4171974-4171993 Msa0625180:three_prime_UTR 45.0%
AATGTGCACCACAATCTGCA+GGG - chr4_3:4171975-4171994 Msa0625180:three_prime_UTR 45.0%
!! GTTCTGGTTCAATTGGCATG+CGG - chr4_3:4172012-4172031 Msa0625180:three_prime_UTR 45.0%
AGTCATAAACCCCAGATGCT+GGG + chr4_3:4172123-4172142 None:intergenic 45.0%
! AGCATCTGGGGTTTATGACT+GGG - chr4_3:4172123-4172142 Msa0625180:CDS 45.0%
TCTCCATTCTGTTGTAGGCA+AGG - chr4_3:4172426-4172445 Msa0625180:intron 45.0%
CATTGTTACTGGAGCTCCAT+TGG + chr4_3:4172547-4172566 None:intergenic 45.0%
CATTTATCGGCAGCATGTGT+TGG - chr4_3:4172766-4172785 Msa0625180:intron 45.0%
AGCAGATACCAATGCCTGTT+TGG + chr4_3:4172926-4172945 None:intergenic 45.0%
ATGAGAGTGGAAAGGGTAGA+TGG + chr4_3:4173044-4173063 None:intergenic 45.0%
CAAATGGAGTCATGAATGCC+AGG + chr4_3:4173317-4173336 None:intergenic 45.0%
GTATGTCCCACCACTTTATG+TGG - chr4_3:4174392-4174411 Msa0625180:intron 45.0%
TGGAACCCACATAAAGTGGT+GGG + chr4_3:4174401-4174420 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG + chr4_3:4174402-4174421 None:intergenic 45.0%
TGTGGGTTCCATTTCCAAAG+TGG - chr4_3:4174410-4174429 Msa0625180:intron 45.0%
! GTAGGACACCACTTTGGAAA+TGG + chr4_3:4174421-4174440 None:intergenic 45.0%
CCGATGTGAAACGACATTAG+AGG - chr4_3:4174888-4174907 Msa0625180:intron 45.0%
!! AGTTCTAAAGGAACGGCTAG+TGG + chr4_3:4174961-4174980 None:intergenic 45.0%
!! TAGCCGTTCCTTTAGAACTG+AGG - chr4_3:4174962-4174981 Msa0625180:CDS 45.0%
ACACTGCCACTCTCCATATA+AGG + chr4_3:4175014-4175033 None:intergenic 45.0%
CAAAAGGGGCTAATAGGATC+TGG + chr4_3:4175050-4175069 None:intergenic 45.0%
! GATCCTATTAGCCCCTTTTG+TGG - chr4_3:4175050-4175069 Msa0625180:exon 45.0%
CTTCCACAAAAGGGGCTAAT+AGG + chr4_3:4175056-4175075 None:intergenic 45.0%
!!! ATTTTAATATTTAGATTTTT+GGG - chr4_3:4173855-4173874 Msa0625180:intron 5.0%
GAAGGAGAAGGAATAGCGGT+GGG + chr4_3:4169159-4169178 None:intergenic 50.0%
AGAAGGAGAAGGAATAGCGG+TGG + chr4_3:4169160-4169179 None:intergenic 50.0%
TCCTTCTCCTTCTTCCGAAG+AGG - chr4_3:4169167-4169186 Msa0625180:three_prime_UTR 50.0%
ACCTCTTCGGAAGAAGGAGA+AGG + chr4_3:4169171-4169190 None:intergenic 50.0%
TATGGATCATACGGAGGAGG+AGG + chr4_3:4170466-4170485 None:intergenic 50.0%
GCATATGGATCATACGGAGG+AGG + chr4_3:4170469-4170488 None:intergenic 50.0%
CCTGCATATGGATCATACGG+AGG + chr4_3:4170472-4170491 None:intergenic 50.0%
CCTCCGTATGATCCATATGC+AGG - chr4_3:4170469-4170488 Msa0625180:intron 50.0%
GCAACAGGATAGCCTGCATA+TGG + chr4_3:4170484-4170503 None:intergenic 50.0%
!! GGCATTGGTACTTGTGCAAC+AGG + chr4_3:4170499-4170518 None:intergenic 50.0%
ATAGACACAGGAGCAGGCAT+TGG + chr4_3:4170514-4170533 None:intergenic 50.0%
CTGTCCTTGAAGTCCTGAAC+GGG - chr4_3:4171141-4171160 Msa0625180:three_prime_UTR 50.0%
TAACAGCACCCTGCAGATTG+TGG + chr4_3:4171986-4172005 None:intergenic 50.0%
!! GGTGCTGTTATCCCAAGTTC+TGG - chr4_3:4171996-4172015 Msa0625180:three_prime_UTR 50.0%
CAGTCATAAACCCCAGATGC+TGG + chr4_3:4172124-4172143 None:intergenic 50.0%
! CAGCATCTGGGGTTTATGAC+TGG - chr4_3:4172122-4172141 Msa0625180:CDS 50.0%
! CGTTTCACATCGGCCTGTTT+TGG + chr4_3:4174881-4174900 None:intergenic 50.0%
TCCACCCTTACCACCAGCAA+TGG - chr4_3:4169103-4169122 Msa0625180:three_prime_UTR 55.0%
GAGGCCATTGCTGGTGGTAA+GGG + chr4_3:4169110-4169129 None:intergenic 55.0%
!! GAAGGAATAGCGGTGGGTTG+AGG + chr4_3:4169153-4169172 None:intergenic 55.0%
GGCGGAGGATGAAAAGGAGA+CGG + chr4_3:4170075-4170094 None:intergenic 55.0%
CACCTGTTTGGGGACCACAT+GGG - chr4_3:4170097-4170116 Msa0625180:intron 55.0%
TACCCATGTGGTCCCCAAAC+AGG + chr4_3:4170102-4170121 None:intergenic 55.0%
GGTGAGATAGACACAGGAGC+AGG + chr4_3:4170520-4170539 None:intergenic 55.0%
TGTGCCCGTTCAGGACTTCA+AGG + chr4_3:4171148-4171167 None:intergenic 55.0%
GAACTCTTCTGTGCCCGTTC+AGG + chr4_3:4171157-4171176 None:intergenic 55.0%
ACCTACCCTATGGCTGTTCC+TGG - chr4_3:4172519-4172538 Msa0625180:CDS 55.0%
ACCAGGAACAGCCATAGGGT+AGG + chr4_3:4172523-4172542 None:intergenic 55.0%
TGGCACCAGGAACAGCCATA+GGG + chr4_3:4172527-4172546 None:intergenic 55.0%
TTGGCACCAGGAACAGCCAT+AGG + chr4_3:4172528-4172547 None:intergenic 55.0%
! ATGGCTGTTCCTGGTGCCAA+TGG - chr4_3:4172528-4172547 Msa0625180:intron 55.0%
! GTGAACTGGGGGCGTACTTT+AGG - chr4_3:4173118-4173137 Msa0625180:intron 55.0%
TGGAGTCATGAATGCCAGGG+TGG + chr4_3:4173313-4173332 None:intergenic 55.0%
GTGGTAAGGGTGGATGCCGT+TGG + chr4_3:4169097-4169116 None:intergenic 60.0%
GCCATTGCTGGTGGTAAGGG+TGG + chr4_3:4169107-4169126 None:intergenic 60.0%
GGAGGCCATTGCTGGTGGTA+AGG + chr4_3:4169111-4169130 None:intergenic 60.0%
!! ATAGCGGTGGGTTGAGGAGG+AGG + chr4_3:4169147-4169166 None:intergenic 60.0%
!! GGAATAGCGGTGGGTTGAGG+AGG + chr4_3:4169150-4169169 None:intergenic 60.0%
!! GGTGGTGGCGGAGGATGAAA+AGG + chr4_3:4170081-4170100 None:intergenic 60.0%
ATCCTCCGCCACCACCTGTT+TGG - chr4_3:4170085-4170104 Msa0625180:intron 60.0%
TCCTCCGCCACCACCTGTTT+GGG - chr4_3:4170086-4170105 Msa0625180:intron 60.0%
TGTGGTCCCCAAACAGGTGG+TGG + chr4_3:4170096-4170115 None:intergenic 60.0%
CCATGTGGTCCCCAAACAGG+TGG + chr4_3:4170099-4170118 None:intergenic 60.0%
CCACCTGTTTGGGGACCACA+TGG - chr4_3:4170096-4170115 Msa0625180:intron 60.0%
TCATACGGAGGAGGAGGTGG+TGG + chr4_3:4170460-4170479 None:intergenic 60.0%
GGATCATACGGAGGAGGAGG+TGG + chr4_3:4170463-4170482 None:intergenic 60.0%
ACTGGAGCTCCATTGGCACC+AGG + chr4_3:4172540-4172559 None:intergenic 60.0%
ACGGCTAGTGGCGTTTGAGG+TGG + chr4_3:4174949-4174968 None:intergenic 60.0%
GGAACGGCTAGTGGCGTTTG+AGG + chr4_3:4174952-4174971 None:intergenic 60.0%
TTGAGGAGGAGGAGGAGCGG+CGG + chr4_3:4169136-4169155 None:intergenic 65.0%
GGGTTGAGGAGGAGGAGGAG+CGG + chr4_3:4169139-4169158 None:intergenic 65.0%
CCTCCGCCACCACCTGTTTG+GGG - chr4_3:4170087-4170106 Msa0625180:intron 65.0%
! GGTCCCCAAACAGGTGGTGG+CGG + chr4_3:4170093-4170112 None:intergenic 65.0%
!! GCGGTGGGTTGAGGAGGAGG+AGG + chr4_3:4169144-4169163 None:intergenic 70.0%
!! CCCCAAACAGGTGGTGGCGG+AGG + chr4_3:4170090-4170109 None:intergenic 70.0%
CGGCGGGAGGCCATTGCTGG+TGG + chr4_3:4169116-4169135 None:intergenic 75.0%
AGGAGGAGGAGGAGCGGCGG+CGG + chr4_3:4169133-4169152 None:intergenic 75.0%
! CGGCGGCGGGAGGCCATTGC+TGG + chr4_3:4169119-4169138 None:intergenic 80.0%
! GGAGGAGGAGGAGCGGCGGC+GGG + chr4_3:4169132-4169151 None:intergenic 80.0%
! GGAGGAGGAGCGGCGGCGGG+AGG + chr4_3:4169129-4169148 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4168919 4175219 4168919 ID=Msa0625180;Name=Msa0625180
chr4_3 mRNA 4168919 4175219 4168919 ID=Msa0625180-mRNA-1;Parent=Msa0625180;Name=Msa0625180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=168|1|1|1|0.85|0.75|8|1878|291
chr4_3 exon 4168919 4169251 4168919 ID=Msa0625180-mRNA-1:exon:1017;Parent=Msa0625180-mRNA-1
chr4_3 exon 4170526 4172181 4170526 ID=Msa0625180-mRNA-1:exon:1016;Parent=Msa0625180-mRNA-1
chr4_3 exon 4172277 4172346 4172277 ID=Msa0625180-mRNA-1:exon:1015;Parent=Msa0625180-mRNA-1
chr4_3 exon 4172455 4172546 4172455 ID=Msa0625180-mRNA-1:exon:1014;Parent=Msa0625180-mRNA-1
chr4_3 exon 4173577 4173691 4173577 ID=Msa0625180-mRNA-1:exon:1013;Parent=Msa0625180-mRNA-1
chr4_3 exon 4174020 4174149 4174020 ID=Msa0625180-mRNA-1:exon:1012;Parent=Msa0625180-mRNA-1
chr4_3 exon 4174626 4174881 4174626 ID=Msa0625180-mRNA-1:exon:1011;Parent=Msa0625180-mRNA-1
chr4_3 exon 4174950 4175219 4174950 ID=Msa0625180-mRNA-1:exon:1010;Parent=Msa0625180-mRNA-1
chr4_3 five_prime_UTR 4175052 4175219 4175052 ID=Msa0625180-mRNA-1:five_prime_utr;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4174950 4175051 4174950 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4174626 4174881 4174626 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4174020 4174149 4174020 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4173577 4173691 4173577 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4172455 4172546 4172455 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4172277 4172346 4172277 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 CDS 4172071 4172181 4172071 ID=Msa0625180-mRNA-1:cds;Parent=Msa0625180-mRNA-1
chr4_3 three_prime_UTR 4170526 4172070 4170526 ID=Msa0625180-mRNA-1:three_prime_utr;Parent=Msa0625180-mRNA-1
chr4_3 three_prime_UTR 4168919 4169251 4168919 ID=Msa0625180-mRNA-1:three_prime_utr;Parent=Msa0625180-mRNA-1
Gene Sequence

>Msa0625180

ATGGCAGCCAACGGCATCCACCCTTACCACCAGCAATGGCCTCCCGCCGCCGCTCCTCCTCCTCCTCAACCCACCGCTATTCCTTCTCCTTCTTCCGAAGAGGTTCGAACCATATTTATAACGGGTCTTCCAGAAGATGTTAAAGAGAGAGAACTTCAAAACCTTTGTCGATGGTTACCTGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCCGAAAAGCCTATGGGTTTTGCTCTCTTCAATTCTCCTCATCAAGCTATTGCTGCTAAAGATATTCTTCAGGATATGCTTTTTGATCCCGAGGCTAAATCTGTTCTTCATACTGAGATGGCCAAGAAAAATCTATTTGTTAAACGAGGAATAGGAGCTGATGCAGTTGCTTTTGATCAAAGTAAACGGTTACGAACAGCTGGGGATTATAATCATACTGGTTATGTAACTCCGTCTCCTTTTCATCCTCCGCCACCACCTGTTTGGGGACCACATGGATATATGGCTCCACCACCTCCTCCTCCGTATGATCCATATGCAGGCTATCCTGTTGCACAAGTACCAATGCCTGCTCCTGTGTCTATCTCACCTAGTAGTTATGTTCCAATTCAGAACACTAAAGATAACCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTGAGGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAATAGTGCTACAAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTGTGGAGCATCTGA
Protein sequence

>Msa0625180

MAANGIHPYHQQWPPAAAPPPPQPTAIPSPSSEEVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADAVAFDQSKRLRTAGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSISPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLWSI*