AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447890 MtrunA17_Chr2g0319951 100.000 218 0 0 1 218 1 218 1.90e-162 447
Msa1447890 MtrunA17_Chr2g0315551 83.871 217 34 1 1 217 1 216 1.73e-135 379
Msa1447890 MtrunA17_Chr4g0046261 76.712 219 46 3 1 217 1 216 7.65e-122 344
Msa1447890 MtrunA17_Chr2g0283131 76.256 219 47 3 1 217 1 216 2.17e-121 343
Msa1447890 MtrunA17_Chr4g0040781 73.973 219 52 3 1 217 1 216 3.47e-120 340
Msa1447890 MtrunA17_Chr2g0325091 73.585 212 52 3 7 217 5 213 1.67e-112 320
Msa1447890 MtrunA17_Chr3g0112681 68.981 216 66 1 3 218 2 216 9.98e-111 316
Msa1447890 MtrunA17_Chr4g0032201 70.093 214 62 2 4 217 3 214 6.14e-110 314
Msa1447890 MtrunA17_Chr2g0276941 66.038 212 72 0 7 218 9 220 3.57e-102 295
Msa1447890 MtrunA17_Chr1g0174281 60.748 214 80 1 7 216 9 222 1.91e-95 278
Msa1447890 MtrunA17_Chr8g0381841 60.280 214 82 2 6 216 10 223 5.37e-92 269
Msa1447890 MtrunA17_Chr3g0123821 59.174 218 86 3 2 216 4 221 2.32e-91 267
Msa1447890 MtrunA17_Chr7g0231131 61.353 207 79 1 11 216 13 219 5.44e-91 266
Msa1447890 MtrunA17_Chr6g0482721 55.924 211 92 1 7 217 6 215 5.07e-84 248
Msa1447890 MtrunA17_Chr8g0346421 55.000 220 88 3 4 217 17 231 1.85e-83 248
Msa1447890 MtrunA17_Chr7g0214241 58.454 207 85 1 12 217 14 220 2.34e-83 247
Msa1447890 MtrunA17_Chr8g0351861 53.744 227 95 3 1 217 1 227 5.64e-82 243
Msa1447890 MtrunA17_Chr1g0189361 55.189 212 90 2 11 217 12 223 9.55e-81 240
Msa1447890 MtrunA17_Chr7g0275991 58.696 184 76 0 5 188 12 195 1.71e-78 234
Msa1447890 MtrunA17_Chr8g0392931 54.502 211 96 0 7 217 8 218 5.76e-77 230
Msa1447890 MtrunA17_Chr7g0234201 55.556 207 88 2 12 217 12 215 4.44e-76 228
Msa1447890 MtrunA17_Chr2g0290891 48.387 217 95 3 10 217 3 211 1.28e-64 199
Msa1447890 MtrunA17_Chr6g0458081 55.689 167 74 0 10 176 3 169 3.90e-64 197
Msa1447890 MtrunA17_Chr4g0055651 46.411 209 101 2 9 217 4 201 4.30e-59 184
Msa1447890 MtrunA17_Chr8g0349711 44.651 215 103 4 12 217 5 212 5.64e-58 182
Msa1447890 MtrunA17_Chr8g0335471 46.479 213 98 3 9 218 4 203 2.63e-57 180
Msa1447890 MtrunA17_Chr7g0250531 46.479 213 97 3 9 218 4 202 7.81e-57 179
Msa1447890 MtrunA17_Chr8g0349681 46.667 210 104 3 10 217 381 584 2.12e-55 185
Msa1447890 MtrunA17_Chr8g0349681 47.904 167 87 0 10 176 172 338 1.06e-49 170
Msa1447890 MtrunA17_Chr8g0349681 51.282 156 76 0 12 167 12 167 5.44e-49 168
Msa1447890 MtrunA17_Chr1g0182321 49.123 171 86 1 5 174 7 177 1.01e-53 171
Msa1447890 MtrunA17_Chr4g0030911 42.991 214 105 5 9 216 11 213 2.13e-53 170
Msa1447890 MtrunA17_Chr1g0212521 42.584 209 114 3 9 216 11 214 2.42e-53 170
Msa1447890 MtrunA17_Chr1g0182301 48.538 171 87 1 5 174 7 177 3.20e-53 170
Msa1447890 MtrunA17_Chr7g0263071 49.102 167 84 1 9 174 11 177 1.98e-52 168
Msa1447890 MtrunA17_Chr2g0276931 44.330 194 106 1 8 201 4 195 4.99e-52 166
Msa1447890 MtrunA17_Chr1g0199331 46.012 163 87 1 15 176 33 195 5.67e-50 161
Msa1447890 MtrunA17_Chr3g0109721 45.679 162 88 0 15 176 12 173 1.23e-48 158
Msa1447890 MtrunA17_Chr2g0327911 45.087 173 93 2 4 174 6 178 1.25e-48 158
Msa1447890 MtrunA17_Chr8g0384311 47.619 168 85 3 9 174 9 175 2.90e-48 157
Msa1447890 MtrunA17_Chr5g0433561 44.444 162 90 0 15 176 12 173 6.88e-47 153
Msa1447890 MtrunA17_Chr1g0159481 48.214 168 84 3 9 174 13 179 2.11e-46 152
Msa1447890 MtrunA17_Chr7g0265001 44.286 210 107 4 10 217 13 214 4.10e-46 152
Msa1447890 MtrunA17_Chr3g0130271 48.824 170 81 5 9 174 8 175 1.62e-45 150
Msa1447890 MtrunA17_Chr8g0390561 40.625 160 95 0 15 174 11 170 1.23e-43 145
Msa1447890 MtrunA17_Chr1g0197331 40.090 222 106 5 6 217 8 212 8.64e-43 143
Msa1447890 MtrunA17_Chr1g0180291 43.062 209 108 6 10 216 11 210 1.02e-42 143
Msa1447890 MtrunA17_Chr5g0400131 36.943 157 99 0 14 170 10 166 7.29e-40 135
Msa1447890 MtrunA17_Chr4g0055081 36.306 157 100 0 14 170 10 166 4.29e-39 134
Msa1447890 MtrunA17_Chr3g0123971 34.783 161 105 0 14 174 10 170 1.47e-38 132
Msa1447890 MtrunA17_Chr8g0382221 34.783 161 105 0 14 174 10 170 1.85e-38 132
Msa1447890 MtrunA17_Chr8g0383261 40.123 162 90 3 13 167 12 173 2.93e-34 121
Msa1447890 MtrunA17_Chr4g0034871 35.714 182 102 4 13 187 8 181 5.92e-34 120
Msa1447890 MtrunA17_Chr6g0466301 36.970 165 97 2 13 170 8 172 9.39e-34 120
Msa1447890 MtrunA17_Chr6g0465491 36.970 165 97 2 13 170 8 172 9.39e-34 120
Msa1447890 MtrunA17_Chr2g0331691 38.889 162 92 3 13 167 10 171 3.06e-33 119
Msa1447890 MtrunA17_Chr1g0201121 37.037 162 95 2 13 167 8 169 6.43e-33 117
Msa1447890 MtrunA17_Chr4g0004661 38.272 162 93 3 13 167 64 225 8.06e-32 116
Msa1447890 MtrunA17_Chr3g0138121 33.117 154 100 2 14 167 14 164 4.94e-24 95.1
Msa1447890 MtrunA17_Chr3g0138111 33.117 154 100 2 14 167 14 164 6.04e-24 95.1
Msa1447890 MtrunA17_Chr3g0138101 33.117 154 100 2 14 167 14 164 6.23e-24 95.1
Msa1447890 MtrunA17_Chr3g0117931 30.387 181 112 5 13 181 8 186 4.84e-22 89.7
Msa1447890 MtrunA17_Chr6g0466161 36.054 147 87 3 28 167 5 151 4.89e-22 89.7
Msa1447890 MtrunA17_Chr6g0465471 36.054 147 87 3 28 167 5 151 5.37e-22 89.7
Msa1447890 MtrunA17_Chr4g0037021 31.492 181 110 5 13 181 6 184 6.72e-22 89.0
Msa1447890 MtrunA17_Chr2g0325101 32.934 167 98 5 13 167 6 170 1.22e-21 88.2
Msa1447890 MtrunA17_Chr4g0046211 37.500 120 72 3 13 131 6 123 1.80e-21 86.7
Msa1447890 MtrunA17_Chr5g0405791 31.138 167 101 5 13 167 6 170 2.18e-20 85.1
Msa1447890 MtrunA17_Chr6g0486041 36.364 121 74 3 13 132 6 124 5.28e-20 84.3
Msa1447890 MtrunA17_Chr8g0371501 31.138 167 101 5 13 167 6 170 6.47e-20 84.0
Msa1447890 MtrunA17_Chr6g0466431 34.343 99 56 1 13 111 8 97 2.39e-16 71.6
Msa1447890 MtrunA17_Chr6g0465611 34.343 99 56 1 13 111 8 97 2.39e-16 71.6
Msa1447890 MtrunA17_Chr1g0178291 33.333 165 100 5 10 174 428 582 2.71e-15 73.9
Msa1447890 MtrunA17_Chr5g0443631 27.717 184 118 6 3 177 95 272 2.69e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447890 AT1G06400.1 83.486 218 34 1 1 218 1 216 2.16e-136 381
Msa1447890 AT1G16920.1 82.569 218 36 2 1 218 1 216 3.61e-133 373
Msa1447890 AT4G18800.1 82.569 218 34 2 1 218 1 214 1.50e-131 369
Msa1447890 AT5G45750.1 81.651 218 38 1 1 218 1 216 3.95e-131 368
Msa1447890 AT5G60860.1 77.273 220 45 3 1 218 1 217 7.37e-125 352
Msa1447890 AT3G15060.1 75.455 220 49 3 1 218 1 217 8.39e-122 344
Msa1447890 AT4G18430.1 73.059 219 54 3 1 217 1 216 3.33e-119 338
Msa1447890 AT1G28550.1 72.146 219 57 3 1 217 1 217 4.94e-117 332
Msa1447890 AT2G33870.1 71.233 219 59 3 1 217 1 217 1.07e-114 327
Msa1447890 AT1G07410.1 70.423 213 60 2 5 217 4 213 2.45e-109 313
Msa1447890 AT1G09630.1 68.224 214 67 1 5 218 4 216 1.80e-107 308
Msa1447890 AT3G46830.1 68.056 216 67 2 4 218 3 217 6.43e-104 299
Msa1447890 AT3G46830.2 68.056 216 67 2 4 218 3 217 6.43e-104 299
Msa1447890 AT5G59150.1 66.977 215 69 2 4 217 3 216 5.20e-103 297
Msa1447890 AT5G47960.1 64.319 213 72 2 7 216 9 220 6.55e-96 279
Msa1447890 AT3G12160.1 63.158 209 72 2 11 216 13 219 1.24e-94 276
Msa1447890 AT4G39990.1 59.447 217 71 3 11 218 15 223 3.55e-90 265
Msa1447890 AT5G65270.1 58.447 219 73 3 11 218 15 226 1.50e-88 260
Msa1447890 AT2G43130.1 57.746 213 85 2 7 217 4 213 9.28e-84 248
Msa1447890 AT5G47520.1 55.022 229 84 3 1 218 1 221 9.51e-84 248
Msa1447890 AT1G05810.1 55.963 218 88 3 6 218 3 217 1.67e-81 242
Msa1447890 AT1G05810.2 55.963 218 88 3 6 218 49 263 4.72e-81 243
Msa1447890 AT2G31680.1 55.046 218 91 4 6 218 3 218 3.52e-80 239
Msa1447890 AT1G18200.1 56.604 212 85 2 1 205 1 212 7.41e-79 236
Msa1447890 AT1G73640.1 52.838 229 97 2 1 218 1 229 5.23e-78 234
Msa1447890 AT3G07410.1 54.419 215 98 0 3 217 2 216 5.65e-78 233
Msa1447890 AT1G01200.1 54.717 212 85 4 8 208 23 234 2.13e-74 225
Msa1447890 AT5G59150.2 62.805 164 59 2 55 217 3 165 1.11e-69 211
Msa1447890 AT4G35860.1 48.095 210 106 2 10 217 3 211 1.94e-65 201
Msa1447890 AT4G17170.1 48.611 216 94 3 10 216 3 210 2.81e-65 201
Msa1447890 AT4G17160.1 50.481 208 96 3 10 216 3 204 8.65e-64 197
Msa1447890 AT1G02130.1 47.642 212 95 3 9 217 4 202 1.18e-60 189
Msa1447890 AT5G47200.1 45.755 212 104 2 7 218 2 202 6.23e-58 182
Msa1447890 AT4G17530.1 45.755 212 104 2 7 218 2 202 9.02e-58 181
Msa1447890 AT3G11730.1 43.541 209 110 2 8 216 3 203 1.36e-54 173
Msa1447890 AT3G09900.1 43.119 218 119 2 1 217 3 216 8.16e-54 172
Msa1447890 AT5G03520.1 43.119 218 117 2 1 217 3 214 8.20e-54 172
Msa1447890 AT3G46060.2 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa1447890 AT3G46060.3 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa1447890 AT3G46060.1 42.105 209 115 3 9 216 11 214 1.83e-52 168
Msa1447890 AT5G59840.1 41.148 209 117 2 9 216 11 214 3.75e-52 167
Msa1447890 AT3G54840.1 46.471 170 90 1 8 176 28 197 4.93e-52 167
Msa1447890 AT4G19640.1 47.239 163 86 0 15 177 12 174 9.71e-52 166
Msa1447890 AT3G54840.3 47.531 162 84 1 16 176 2 163 1.49e-51 164
Msa1447890 AT3G53610.2 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa1447890 AT3G53610.3 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa1447890 AT3G53610.1 40.670 209 118 2 9 216 11 214 4.65e-51 165
Msa1447890 AT5G45130.1 46.012 163 88 0 15 177 12 174 6.86e-51 164
Msa1447890 AT3G54840.2 47.826 161 83 1 8 167 28 188 8.85e-51 163
Msa1447890 AT1G43890.3 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa1447890 AT1G43890.1 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa1447890 AT1G43890.2 47.644 191 96 4 1 189 1 189 1.76e-49 160
Msa1447890 AT5G45130.2 45.342 161 88 0 17 177 22 182 4.62e-49 159
Msa1447890 AT4G35860.2 46.386 166 82 2 55 216 2 164 5.18e-47 153
Msa1447890 AT5G03530.2 42.922 219 114 6 1 217 1 210 8.97e-45 149
Msa1447890 AT5G03530.1 42.922 219 114 6 1 217 1 210 8.97e-45 149
Msa1447890 AT4G19640.3 48.855 131 67 0 15 145 12 142 2.89e-40 136
Msa1447890 AT4G19640.2 50.862 116 57 0 15 130 12 127 3.03e-39 132
Msa1447890 AT2G22290.1 35.669 157 101 0 14 170 10 166 1.81e-38 132
Msa1447890 AT4G39890.1 36.076 158 100 1 14 170 10 167 4.18e-38 132
Msa1447890 AT5G10260.1 35.032 157 102 0 14 170 10 166 7.92e-38 130
Msa1447890 AT2G44610.1 35.669 157 101 0 14 170 10 166 2.55e-37 129
Msa1447890 AT5G03520.2 39.181 171 97 2 48 217 40 204 3.02e-37 129
Msa1447890 AT5G64990.1 34.783 161 105 0 14 174 8 168 2.72e-36 127
Msa1447890 AT3G09910.3 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa1447890 AT3G09910.1 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa1447890 AT3G09910.2 44.186 172 93 3 10 179 10 180 7.19e-36 125
Msa1447890 AT2G21880.1 38.182 165 95 2 13 170 9 173 4.16e-35 124
Msa1447890 AT3G18820.1 37.363 182 99 4 13 187 8 181 6.34e-35 123
Msa1447890 AT3G09910.5 43.787 169 92 3 10 176 10 177 6.51e-35 123
Msa1447890 AT3G09910.4 43.787 169 92 3 10 176 10 177 6.51e-35 123
Msa1447890 AT1G22740.1 38.272 162 93 2 13 167 8 169 7.42e-35 123
Msa1447890 AT5G46025.1 55.660 106 46 1 75 179 6 111 2.12e-34 119
Msa1447890 AT1G52280.1 35.673 171 103 2 13 176 8 178 4.38e-34 121
Msa1447890 AT5G64990.2 33.333 168 105 1 14 174 8 175 1.51e-33 120
Msa1447890 AT3G16100.1 37.037 162 95 2 13 167 8 169 4.55e-33 118
Msa1447890 AT4G09720.1 36.364 165 98 2 13 170 8 172 1.05e-32 117
Msa1447890 AT1G49300.2 35.165 182 103 3 13 187 8 181 3.48e-32 116
Msa1447890 AT1G49300.1 35.165 182 103 3 13 187 8 181 3.48e-32 116
Msa1447890 AT4G09720.4 35.882 170 97 3 13 170 8 177 2.19e-31 114
Msa1447890 AT4G09720.3 34.659 176 97 3 13 170 8 183 2.64e-30 112
Msa1447890 AT5G39620.1 38.182 165 93 3 14 170 6 169 3.87e-30 110
Msa1447890 AT5G55080.1 34.545 165 97 3 14 174 14 171 1.13e-26 102
Msa1447890 AT2G21880.4 35.811 148 88 2 30 170 1 148 2.24e-26 100
Msa1447890 AT2G21880.3 35.811 148 88 2 30 170 1 148 2.24e-26 100
Msa1447890 AT2G21880.2 33.333 165 95 3 13 170 9 165 2.95e-25 98.2
Msa1447890 AT2G44690.1 34.444 180 104 5 13 180 18 195 5.51e-25 97.8
Msa1447890 AT5G20020.1 33.117 154 100 2 14 167 14 164 7.04e-24 95.1
Msa1447890 AT5G20010.1 33.117 154 100 2 14 167 14 164 9.16e-24 94.7
Msa1447890 AT5G55190.1 33.117 154 100 2 14 167 14 164 9.46e-24 94.7
Msa1447890 AT4G09720.6 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa1447890 AT4G09720.5 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa1447890 AT4G09720.2 35.507 138 82 2 40 170 1 138 4.83e-22 89.0
Msa1447890 AT4G35020.1 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa1447890 AT4G35020.2 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa1447890 AT4G35020.3 35.088 171 89 6 13 167 6 170 9.28e-22 89.0
Msa1447890 AT1G75840.1 33.533 167 97 6 13 167 6 170 2.08e-21 88.2
Msa1447890 AT1G20090.1 33.533 167 97 6 13 167 5 169 3.87e-21 87.4
Msa1447890 AT4G08190.1 63.636 66 21 1 102 167 65 127 8.59e-21 84.7
Msa1447890 AT3G48040.1 30.601 183 109 6 13 183 8 184 2.46e-20 85.5
Msa1447890 AT4G28950.1 28.571 182 118 5 13 184 6 185 2.67e-20 85.5
Msa1447890 AT5G62880.1 30.114 176 109 5 13 176 8 181 5.14e-20 84.7
Msa1447890 AT3G51300.1 31.515 165 99 5 15 167 8 170 1.01e-19 83.6
Msa1447890 AT5G45970.1 37.500 120 72 3 13 131 6 123 1.92e-19 83.2
Msa1447890 AT2G17800.2 31.737 167 100 6 13 167 6 170 2.74e-19 82.4
Msa1447890 AT2G17800.1 31.737 167 100 6 13 167 6 170 2.74e-19 82.4
Msa1447890 AT4G35950.1 31.737 167 100 6 13 167 6 170 3.37e-19 82.4
Msa1447890 AT3G48040.2 35.000 120 75 3 13 131 8 125 1.48e-18 80.1
Msa1447890 AT4G35020.4 37.719 114 68 3 15 127 8 119 2.25e-18 79.0
Msa1447890 AT4G35020.5 37.719 114 68 3 15 127 8 119 2.25e-18 79.0
Msa1447890 AT5G62880.2 33.094 139 83 4 13 150 8 137 3.54e-18 79.3
Msa1447890 AT3G51290.2 30.159 126 75 4 54 167 647 771 1.61e-11 63.5
Msa1447890 AT5G09910.1 26.056 142 80 3 14 130 23 164 8.33e-11 60.8
Msa1447890 AT5G09910.4 26.056 142 80 3 14 130 23 164 8.33e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATGACCACAATATT+AGG 0.173279 tig0031947:-41449 None:intergenic
AATATTGTGGTCATGCTTAT+TGG 0.176164 tig0031947:+41433 Msa1447890:CDS
CACTAGAAACGAGTTCAATT+TGG 0.247348 tig0031947:+36107 Msa1447890:CDS
GTAGAGTTTGTTTCAACTAT+TGG 0.250340 tig0031947:-35965 None:intergenic
GCTAGTCTTACATATGGTTT+TGG 0.283944 tig0031947:+41820 Msa1447890:three_prime_UTR
CTAGTTCTAATCGGCGATTC+AGG 0.284120 tig0031947:+36054 Msa1447890:CDS
AATCCAGGTTGCTCCATTTC+CGG 0.320810 tig0031947:+35840 Msa1447890:five_prime_UTR
AGGAGGGAATTTCGGTGAAT+TGG 0.329562 tig0031947:-35910 None:intergenic
ATTGTTTAGTCGAGGCTTAC+AGG 0.334133 tig0031947:+35775 None:intergenic
TTGGAATCTAAATCCACTAT+TGG 0.346232 tig0031947:+36126 Msa1447890:CDS
CGAGGCTTACAGGTCGAAAA+AGG 0.355566 tig0031947:+35785 Msa1447890:five_prime_UTR
TGTTGATGCTAAAGTCATTA+AGG 0.361634 tig0031947:+36176 Msa1447890:CDS
AGTCATTAAGGCTCAGATTT+GGG 0.364724 tig0031947:+36188 Msa1447890:CDS
GAATTTCGGTGAATTGGAAT+TGG 0.366954 tig0031947:-35904 None:intergenic
TAGAATGAAGGAGGGAATTT+CGG 0.377107 tig0031947:-35918 None:intergenic
CTTCATGGAGACTTCTGCTT+TGG 0.384252 tig0031947:+41534 Msa1447890:CDS
AAGAAGAAAATGCGTTGTTC+CGG 0.389901 tig0031947:-35859 None:intergenic
AAGTCATTAAGGCTCAGATT+TGG 0.391753 tig0031947:+36187 Msa1447890:CDS
AAAATGCGTTGTTCCGGAAA+TGG 0.401169 tig0031947:-35853 None:intergenic
GAGGGAGTCTCTCTACTTCA+TGG 0.418666 tig0031947:+41519 Msa1447890:CDS
AAACGTGAAAGAGGATTCTT+CGG 0.420021 tig0031947:+41684 Msa1447890:CDS
CATAAGGCTAGTCTTACATA+TGG 0.431448 tig0031947:+41814 Msa1447890:three_prime_UTR
AGCGAATTCAACACCAATAG+TGG 0.433002 tig0031947:-36139 None:intergenic
TGTTCTTCTTCAACCATGGC+TGG 0.439946 tig0031947:+35994 Msa1447890:exon
AAGACTTTCCATCTTCTGTT+GGG 0.447210 tig0031947:-41508 None:intergenic
AAAGACTTTCCATCTTCTGT+TGG 0.448264 tig0031947:-41509 None:intergenic
TAAGCATGACCACAATATTA+GGG 0.453467 tig0031947:-41448 None:intergenic
GATTTGGGATACTGCTGGTC+AGG 0.455851 tig0031947:+36203 Msa1447890:CDS
GTTCTCAAATGTGGCACGCC+TGG 0.475604 tig0031947:-41387 None:intergenic
GAATTTCAACTTGTAGCATA+AGG 0.479529 tig0031947:+41798 Msa1447890:three_prime_UTR
CACTTGTTCTTCTTCAACCA+TGG 0.481232 tig0031947:+35990 Msa1447890:exon
GGTGCTTCATGTATGTCAGT+TGG 0.486853 tig0031947:+41738 Msa1447890:exon
ATTTGGATGCTGCTCGAACT+AGG 0.492151 tig0031947:+41717 Msa1447890:CDS
CGATTAGAACTAGTTTGAAA+AGG 0.492988 tig0031947:-36044 None:intergenic
CTAATCGGCGATTCAGGTGT+TGG 0.497795 tig0031947:+36060 Msa1447890:CDS
AGCATCAACAGTCAAACTCT+TGG 0.503401 tig0031947:-36163 None:intergenic
TACACGATTCCGCACAATCC+AGG 0.509461 tig0031947:+35825 Msa1447890:five_prime_UTR
AGCAAGAAAGCAGTTGAAGC+GGG 0.518997 tig0031947:+41616 Msa1447890:CDS
CCACATTTGAGAACGCTGCC+AGG 0.522619 tig0031947:+41377 Msa1447890:CDS
CATCTTGTAAATGTCTGCAC+TGG 0.524710 tig0031947:+41776 Msa1447890:three_prime_UTR
GTTGCTGTCCCAACAGAAGA+TGG 0.535125 tig0031947:+41481 Msa1447890:CDS
TTGATGTAACGGTAGAATGA+AGG 0.540826 tig0031947:-35930 None:intergenic
GTCTGCTCTGTATCCAGCCA+TGG 0.542247 tig0031947:-36007 None:intergenic
GCAGTTGAAGCGGGTGAAGG+TGG 0.542492 tig0031947:+41625 Msa1447890:CDS
AGTGAATCTAGAAAGCAAGT+TGG 0.548595 tig0031947:-36088 None:intergenic
ATGTAACGGTAGAATGAAGG+AGG 0.551793 tig0031947:-35927 None:intergenic
ACAGACAATAAACGTGAAAG+AGG 0.555146 tig0031947:+41675 Msa1447890:CDS
GTTCCGGAAATGGAGCAACC+TGG 0.556577 tig0031947:-35843 None:intergenic
GCTCAGATTTGGGATACTGC+TGG 0.571910 tig0031947:+36198 Msa1447890:CDS
GAGCAAGAAAGCAGTTGAAG+CGG 0.576413 tig0031947:+41615 Msa1447890:CDS
TACTTGTCTATGATGTCACC+AGG 0.586902 tig0031947:+41350 Msa1447890:CDS
TCGCAACTCTTTCAACCACC+TGG 0.589547 tig0031947:-41414 None:intergenic
TTATTGTCTGTCCTACAGAC+GGG 0.589827 tig0031947:-41682 None:intergenic
AAAGCAGTTGAAGCGGGTGA+AGG 0.591230 tig0031947:+41622 Msa1447890:CDS
GGGATACTGCTGGTCAGGAA+AGG 0.593119 tig0031947:+36208 Msa1447890:CDS
TTTATTGTCTGTCCTACAGA+CGG 0.598655 tig0031947:-41683 None:intergenic
CTTCTGTTGGGACAGCAACA+AGG 0.604051 tig0031947:-41496 None:intergenic
GCTTACTACCGAGGAGCTGT+CGG 0.604595 tig0031947:+41322 Msa1447890:CDS
CCTGGCAGCGTTCTCAAATG+TGG 0.607575 tig0031947:-41396 None:intergenic
GTAAAGCACCGACAGCTCCT+CGG 0.608510 tig0031947:-41349 None:intergenic
TTGGGACAGCAACAAGGTGT+CGG 0.610129 tig0031947:-41490 None:intergenic
TCCTCGTCAGTCCCGTCTGT+AGG 0.610460 tig0031947:+41652 Msa1447890:CDS
TCACACAGACCCTAATATTG+TGG 0.615605 tig0031947:+41420 Msa1447890:CDS
ATGGAGCAACCTGGATTGTG+CGG 0.618740 tig0031947:-35834 None:intergenic
TGTAACGGTAGAATGAAGGA+GGG 0.625360 tig0031947:-35926 None:intergenic
TTTGATTTGATTTGATGTAA+CGG 0.629354 tig0031947:-35941 None:intergenic
CTGCTTTCTTGCTCACTATG+CGG 0.632736 tig0031947:-41625 None:intergenic
TCCTACAGACGGGACTGACG+AGG 0.654473 tig0031947:-41672 None:intergenic
AGTAAGCACTAGTGATGGCA+CGG 0.659457 tig0031947:-41325 None:intergenic
TCGGTAGTAAGCACTAGTGA+TGG 0.661244 tig0031947:-41330 None:intergenic
ATCACTAGTGCTTACTACCG+AGG 0.674407 tig0031947:+41313 Msa1447890:CDS
CATTTGAGAACGCTGCCAGG+TGG 0.693994 tig0031947:+41380 Msa1447890:CDS
AGACATTTACAAGATGACAC+AGG 0.741946 tig0031947:-41788 None:intergenic
TGTAGAAAATGCATTCACTG+AGG 0.755384 tig0031947:+41567 Msa1447890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAATAAAAAAAA+AGG - tig0031947:37252-37271 None:intergenic 0.0%
!! AAAAATTGAAATTAAAGAAA+AGG - tig0031947:36251-36270 None:intergenic 10.0%
!!! ATTGATAATTGATAAATAAA+GGG - tig0031947:39412-39431 None:intergenic 10.0%
!!! TATTGATAATTGATAAATAA+AGG - tig0031947:39413-39432 None:intergenic 10.0%
!! AAATAAGAACAAATCAATAA+GGG - tig0031947:36311-36330 None:intergenic 15.0%
!! TCAAAATTTAAACAATCAAT+CGG - tig0031947:36441-36460 None:intergenic 15.0%
!! TAATGTGATCAATAAATTTA+AGG - tig0031947:36809-36828 None:intergenic 15.0%
!! GTGTTTAAAAATAAAAATAG+AGG - tig0031947:38042-38061 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - tig0031947:39218-39237 None:intergenic 15.0%
!! AACATGTAATTAAGAATTAT+TGG - tig0031947:39557-39576 None:intergenic 15.0%
!!! AGATTTTTTGGATAAAATTA+CGG - tig0031947:40531-40550 None:intergenic 15.0%
!!! TTTGATTTGATTTGATGTAA+CGG - tig0031947:35944-35963 None:intergenic 20.0%
!! GAAATAAGAACAAATCAATA+AGG - tig0031947:36312-36331 None:intergenic 20.0%
!!! ATATGTAGTAGTAGTTTTTA+GGG + tig0031947:36384-36403 Msa1447890:intron 20.0%
!! CAAAATTTAAACAATCAATC+GGG - tig0031947:36440-36459 None:intergenic 20.0%
!!! AAACATTTTTGTTTATTTGC+CGG + tig0031947:36528-36547 Msa1447890:intron 20.0%
!!! AGTATGATTTTGTTTTTACA+CGG + tig0031947:36569-36588 Msa1447890:intron 20.0%
!!! AAATTTAAATCTGCACTTTT+TGG - tig0031947:36678-36697 None:intergenic 20.0%
!! ATTTAATTCATATACACTGT+CGG - tig0031947:36786-36805 None:intergenic 20.0%
!! TATTTCAAAATCGTTCTTAT+TGG + tig0031947:36837-36856 Msa1447890:intron 20.0%
!!! TTCAAAGTTTTCTATAAACT+TGG + tig0031947:36869-36888 Msa1447890:intron 20.0%
!!! AATAGTTTTCTAATCATTTC+AGG - tig0031947:37300-37319 None:intergenic 20.0%
!! TGAAATGATTAGAAAACTAT+TGG + tig0031947:37299-37318 Msa1447890:intron 20.0%
!! CAAGCATAGATAAAAATATT+CGG + tig0031947:37556-37575 Msa1447890:intron 20.0%
!! AAGCATAGATAAAAATATTC+GGG + tig0031947:37557-37576 Msa1447890:intron 20.0%
!!! TAAATCCTATTTTTTCAGAT+AGG - tig0031947:37951-37970 None:intergenic 20.0%
!! TCTGAAAAAATAGGATTTAT+AGG + tig0031947:37952-37971 Msa1447890:intron 20.0%
!! CTGAAAAAATAGGATTTATA+GGG + tig0031947:37953-37972 Msa1447890:intron 20.0%
!! TGAAAAAATAGGATTTATAG+GGG + tig0031947:37954-37973 Msa1447890:intron 20.0%
!!! ATTTTATGCAGAATCATAAA+GGG - tig0031947:38416-38435 None:intergenic 20.0%
!!! AAGATTACACATTTTCAAAT+GGG - tig0031947:39178-39197 None:intergenic 20.0%
!! ATTGATAAATAAAGGGAAAA+AGG - tig0031947:39405-39424 None:intergenic 20.0%
!!! TCTTTTTTTTTTTTTTGAGG+GGG - tig0031947:39441-39460 None:intergenic 20.0%
!!! CTCTTTTTTTTTTTTTTGAG+GGG - tig0031947:39442-39461 None:intergenic 20.0%
!!! GCTCTTTTTTTTTTTTTTGA+GGG - tig0031947:39443-39462 None:intergenic 20.0%
!!! AGCTCTTTTTTTTTTTTTTG+AGG - tig0031947:39444-39463 None:intergenic 20.0%
!!! CAGTTTTACATAGATTAATA+AGG - tig0031947:40217-40236 None:intergenic 20.0%
!! TGAACTTATGTTTATTACAT+AGG + tig0031947:40238-40257 Msa1447890:intron 20.0%
!!! GATTTTTTGGATAAAATTAC+GGG - tig0031947:40530-40549 None:intergenic 20.0%
!! TAAATGTTTACTATACTCAA+TGG + tig0031947:40849-40868 Msa1447890:intron 20.0%
!! CATTATCTTGTATAAATATG+AGG - tig0031947:40894-40913 None:intergenic 20.0%
!! TACTTAAAGATATAGAATGA+AGG + tig0031947:40976-40995 Msa1447890:intron 20.0%
!!! TTTTTTTGAATAAACTGAGT+TGG + tig0031947:41163-41182 Msa1447890:intron 20.0%
!!! CTTTTCAAACTAGTTCTAAT+CGG + tig0031947:36045-36064 Msa1447890:CDS 25.0%
!! GATATGTAGTAGTAGTTTTT+AGG + tig0031947:36383-36402 Msa1447890:intron 25.0%
!!! AATTTTGATACGCTGTTAAA+AGG + tig0031947:36465-36484 Msa1447890:intron 25.0%
!! AATCACGTATTCAATCATTT+TGG + tig0031947:36628-36647 Msa1447890:intron 25.0%
!! TATTCAATCATTTTGGACAT+CGG + tig0031947:36635-36654 Msa1447890:intron 25.0%
!! TTTTCTATAAACTTGGCATT+GGG + tig0031947:36876-36895 Msa1447890:intron 25.0%
! TTAAGGATTAAGGGTAATAA+AGG - tig0031947:37070-37089 None:intergenic 25.0%
! AGATAAGTAAGATTTGCAAA+GGG - tig0031947:37422-37441 None:intergenic 25.0%
! AAGATAAGTAAGATTTGCAA+AGG - tig0031947:37423-37442 None:intergenic 25.0%
! TTTATTAATCCATGTAACCA+TGG + tig0031947:37441-37460 Msa1447890:intron 25.0%
!!! TGCCCAAATAATATTGATTT+GGG + tig0031947:37687-37706 Msa1447890:intron 25.0%
! ACCCCAAATCAATATTATTT+GGG - tig0031947:37692-37711 None:intergenic 25.0%
! AACCCCAAATCAATATTATT+TGG - tig0031947:37693-37712 None:intergenic 25.0%
! CTTTGTAAGAAAAAATGAAG+AGG - tig0031947:37993-38012 None:intergenic 25.0%
!! TTTTAAACACAAGTTACTCA+TGG + tig0031947:38052-38071 Msa1447890:intron 25.0%
! TTTAAACACAAGTTACTCAT+GGG + tig0031947:38053-38072 Msa1447890:intron 25.0%
!! TTTTATGCAGAATCATAAAG+GGG - tig0031947:38415-38434 None:intergenic 25.0%
!! GATTTTATGCAGAATCATAA+AGG - tig0031947:38417-38436 None:intergenic 25.0%
! ACTATGTCGTATTAACTATT+AGG - tig0031947:38481-38500 None:intergenic 25.0%
! ACTTAAAAACACATGAACAT+TGG - tig0031947:38733-38752 None:intergenic 25.0%
!! TTATTGAGTTGCTTTAGATT+AGG + tig0031947:38938-38957 Msa1447890:intron 25.0%
! GTACAGTAGAATGTAATAAT+AGG + tig0031947:39040-39059 Msa1447890:intron 25.0%
!! CAAGATTACACATTTTCAAA+TGG - tig0031947:39179-39198 None:intergenic 25.0%
! AAATATGGTCAAAGTAAGTT+AGG - tig0031947:39203-39222 None:intergenic 25.0%
!!! TTTTTTTTTTTTTTGAGGGG+GGG - tig0031947:39439-39458 None:intergenic 25.0%
!!! CTTTTTTTTTTTTTTGAGGG+GGG - tig0031947:39440-39459 None:intergenic 25.0%
!! TTGTATTCATTTGATAGCAT+GGG + tig0031947:39628-39647 Msa1447890:intron 25.0%
! TAACAAATATCAAAGGGAAT+TGG - tig0031947:39867-39886 None:intergenic 25.0%
! ATGAGCTAACAAATATCAAA+GGG - tig0031947:39873-39892 None:intergenic 25.0%
! AAACGAGATAGAAATCTAAA+AGG - tig0031947:40046-40065 None:intergenic 25.0%
! TTAATAAGGATAACTGGATA+AGG - tig0031947:40203-40222 None:intergenic 25.0%
! CATAGATTAATAAGGATAAC+TGG - tig0031947:40209-40228 None:intergenic 25.0%
! AGATATTATGTGACTATGTT+AGG + tig0031947:40574-40593 Msa1447890:intron 25.0%
!! AGGGAATGATTTGTATAAAT+AGG + tig0031947:40639-40658 Msa1447890:intron 25.0%
!! GAATGATTTGTATAAATAGG+AGG + tig0031947:40642-40661 Msa1447890:intron 25.0%
! TGTTTGGATATAGAATAAAG+GGG - tig0031947:40950-40969 None:intergenic 25.0%
! CTGTTTGGATATAGAATAAA+GGG - tig0031947:40951-40970 None:intergenic 25.0%
! ATCAATTGCAAAAAAAATCG+AGG - tig0031947:41143-41162 None:intergenic 25.0%
!! AATTGGAGTTTTTGAGGAAA+AGG - tig0031947:35890-35909 None:intergenic 30.0%
! AATTGGAATTGGAGTTTTTG+AGG - tig0031947:35896-35915 None:intergenic 30.0%
! GTAGAGTTTGTTTCAACTAT+TGG - tig0031947:35968-35987 None:intergenic 30.0%
! CGATTAGAACTAGTTTGAAA+AGG - tig0031947:36047-36066 None:intergenic 30.0%
TTGGAATCTAAATCCACTAT+TGG + tig0031947:36126-36145 Msa1447890:CDS 30.0%
TGTTGATGCTAAAGTCATTA+AGG + tig0031947:36176-36195 Msa1447890:CDS 30.0%
!!! TAGTAGTAGTTTTTAGGGTT+TGG + tig0031947:36389-36408 Msa1447890:intron 30.0%
TGTTAAAAGGTCGCAATAAT+TGG + tig0031947:36478-36497 Msa1447890:intron 30.0%
! GTTTTCTATAAACTTGGCAT+TGG + tig0031947:36875-36894 Msa1447890:intron 30.0%
TTTCTATAAACTTGGCATTG+GGG + tig0031947:36877-36896 Msa1447890:intron 30.0%
GTGTTTAAATCACTTTCAAG+TGG + tig0031947:36951-36970 Msa1447890:intron 30.0%
ATTTGAAAAAATTTCCACCG+AGG + tig0031947:37023-37042 Msa1447890:intron 30.0%
!! CTGTGGATTTTAAGGATTAA+GGG - tig0031947:37079-37098 None:intergenic 30.0%
!! TCTGTGGATTTTAAGGATTA+AGG - tig0031947:37080-37099 None:intergenic 30.0%
AAAGCAAGTCAACAAATGTA+CGG - tig0031947:37105-37124 None:intergenic 30.0%
! AGTTTTCTAATCATTTCAGG+AGG - tig0031947:37297-37316 None:intergenic 30.0%
! GTGCCCAAATAATATTGATT+TGG + tig0031947:37686-37705 Msa1447890:intron 30.0%
!! GCCCAAATAATATTGATTTG+GGG + tig0031947:37688-37707 Msa1447890:intron 30.0%
ATGATCCACTAATAGGAAAT+GGG - tig0031947:37900-37919 None:intergenic 30.0%
TATGATCCACTAATAGGAAA+TGG - tig0031947:37901-37920 None:intergenic 30.0%
CCACAAACATAAGTATAACT+GGG - tig0031947:37927-37946 None:intergenic 30.0%
CCAGTTATACTTATGTTTGT+GGG + tig0031947:37925-37944 Msa1447890:intron 30.0%
AATACGACATAGTGCTTATA+TGG + tig0031947:38488-38507 Msa1447890:intron 30.0%
!!! AGTGTTGGTTTTACAAAGAA+GGG - tig0031947:38573-38592 None:intergenic 30.0%
!!! AAGTGTTGGTTTTACAAAGA+AGG - tig0031947:38574-38593 None:intergenic 30.0%
TGACAGTAACACATTGATAT+CGG - tig0031947:38701-38720 None:intergenic 30.0%
!!! ATGTGTTTTTAAGTGCTTCA+TGG + tig0031947:38739-38758 Msa1447890:intron 30.0%
TCCACATATATAAAGGATAG+AGG + tig0031947:38765-38784 Msa1447890:intron 30.0%
ACCTCTATCCTTTATATATG+TGG - tig0031947:38769-38788 None:intergenic 30.0%
CATATATAAAGGATAGAGGT+AGG + tig0031947:38769-38788 Msa1447890:intron 30.0%
AACTCAATAACAGACCAATA+TGG - tig0031947:38928-38947 None:intergenic 30.0%
TTAAGCTCAAAATTGTGCAT+TGG + tig0031947:39330-39349 Msa1447890:intron 30.0%
TCAACTGTGTCAAGTATTAT+GGG + tig0031947:39367-39386 Msa1447890:intron 30.0%
!!! TTTTTTTTTTTTTGAGGGGG+GGG - tig0031947:39438-39457 None:intergenic 30.0%
ATCAAATGAATACAAGTTGC+AGG - tig0031947:39623-39642 None:intergenic 30.0%
! CTTGTATTCATTTGATAGCA+TGG + tig0031947:39627-39646 Msa1447890:intron 30.0%
! TGTATTCATTTGATAGCATG+GGG + tig0031947:39629-39648 Msa1447890:intron 30.0%
! ACAATTTTACAGACCTTACA+AGG - tig0031947:39771-39790 None:intergenic 30.0%
TTGTAAGGTCTGTAAAATTG+TGG + tig0031947:39770-39789 Msa1447890:intron 30.0%
CATGAGCTAACAAATATCAA+AGG - tig0031947:39874-39893 None:intergenic 30.0%
ACCAGAACTTCTAGTAATAT+GGG - tig0031947:39982-40001 None:intergenic 30.0%
AAGAACTGAACTTGTATCAA+AGG + tig0031947:40092-40111 Msa1447890:intron 30.0%
TAACATCATATTCACTTCTG+CGG + tig0031947:40133-40152 Msa1447890:intron 30.0%
TCACGTTTGACAAAATTACT+AGG + tig0031947:40424-40443 Msa1447890:intron 30.0%
TATCTCTAGTTAGTGTATCA+GGG - tig0031947:40559-40578 None:intergenic 30.0%
ATATCTCTAGTTAGTGTATC+AGG - tig0031947:40560-40579 None:intergenic 30.0%
TATAGAAGCAGTCATCTATT+TGG + tig0031947:40598-40617 Msa1447890:intron 30.0%
ATAGAAGCAGTCATCTATTT+GGG + tig0031947:40599-40618 Msa1447890:intron 30.0%
! ATTTGGGACAGTTAATTAGA+TGG + tig0031947:40615-40634 Msa1447890:intron 30.0%
TTGAAAGAATGAGAAAGAAC+AGG + tig0031947:40709-40728 Msa1447890:intron 30.0%
TGAAAGAATGAGAAAGAACA+GGG + tig0031947:40710-40729 Msa1447890:intron 30.0%
ACATTTAGTAAATAGAGCAG+TGG - tig0031947:40836-40855 None:intergenic 30.0%
TGTATAAATATGAGGATGCA+AGG - tig0031947:40886-40905 None:intergenic 30.0%
CCTGTTTGGATATAGAATAA+AGG - tig0031947:40952-40971 None:intergenic 30.0%
CCTTTATTCTATATCCAAAC+AGG + tig0031947:40949-40968 Msa1447890:intron 30.0%
TCTTTAAGTAATAGCCTGTT+TGG - tig0031947:40966-40985 None:intergenic 30.0%
CATCTACTCAATATATTCTG+CGG + tig0031947:41058-41077 Msa1447890:intron 30.0%
ATTAGTTATGCCGTTAACAA+TGG + tig0031947:41220-41239 Msa1447890:intron 30.0%
TTAGTTATGCCGTTAACAAT+GGG + tig0031947:41221-41240 Msa1447890:intron 30.0%
TAAGCATGACCACAATATTA+GGG - tig0031947:41432-41451 None:intergenic 30.0%
ATAAGCATGACCACAATATT+AGG - tig0031947:41433-41452 None:intergenic 30.0%
AATATTGTGGTCATGCTTAT+TGG + tig0031947:41433-41452 Msa1447890:CDS 30.0%
! AGTGAATGCATTTTCTACAT+TGG - tig0031947:41566-41585 None:intergenic 30.0%
GAATTTCAACTTGTAGCATA+AGG + tig0031947:41798-41817 Msa1447890:three_prime_UTR 30.0%
AAGAAGAAAATGCGTTGTTC+CGG - tig0031947:35862-35881 None:intergenic 35.0%
GAATTTCGGTGAATTGGAAT+TGG - tig0031947:35907-35926 None:intergenic 35.0%
TAGAATGAAGGAGGGAATTT+CGG - tig0031947:35921-35940 None:intergenic 35.0%
TTGATGTAACGGTAGAATGA+AGG - tig0031947:35933-35952 None:intergenic 35.0%
AGTGAATCTAGAAAGCAAGT+TGG - tig0031947:36091-36110 None:intergenic 35.0%
CACTAGAAACGAGTTCAATT+TGG + tig0031947:36107-36126 Msa1447890:CDS 35.0%
AAGTCATTAAGGCTCAGATT+TGG + tig0031947:36187-36206 Msa1447890:CDS 35.0%
AGTCATTAAGGCTCAGATTT+GGG + tig0031947:36188-36207 Msa1447890:CDS 35.0%
TGTTGTCAATCACTCATTAC+CGG - tig0031947:36550-36569 None:intergenic 35.0%
GAAGTCGTTCGATAAAGATT+GGG - tig0031947:36711-36730 None:intergenic 35.0%
CATTCACGAATTCAAGACAT+CGG - tig0031947:36733-36752 None:intergenic 35.0%
GCGTGCACATGATAATTTAT+TGG + tig0031947:36929-36948 Msa1447890:intron 35.0%
TTGTCAAATAGTGGCTATAG+TGG + tig0031947:36976-36995 Msa1447890:intron 35.0%
TAACAAGTCACGTATGTACA+TGG - tig0031947:37139-37158 None:intergenic 35.0%
TTCTAATCATTTCAGGAGGT+TGG - tig0031947:37293-37312 None:intergenic 35.0%
CAAAGGGTGAAATATGTTCA+GGG - tig0031947:37406-37425 None:intergenic 35.0%
!! TTTTGACTACCATGGTTACA+TGG - tig0031947:37453-37472 None:intergenic 35.0%
!! GGGTTTTATGATCCACTAAT+AGG - tig0031947:37907-37926 None:intergenic 35.0%
CCCAGTTATACTTATGTTTG+TGG + tig0031947:37924-37943 Msa1447890:intron 35.0%
CCCACAAACATAAGTATAAC+TGG - tig0031947:37928-37947 None:intergenic 35.0%
!! ACTCTCTATTTCTGTTCTGT+AGG + tig0031947:38144-38163 Msa1447890:intron 35.0%
TCTGTAGGATTAGATGTTCA+TGG + tig0031947:38159-38178 Msa1447890:intron 35.0%
TCATAAAGGGGAGGTAAAAT+CGG - tig0031947:38403-38422 None:intergenic 35.0%
ACGTCTTTGATCATAAGTGT+TGG - tig0031947:38588-38607 None:intergenic 35.0%
ATGGCGTTCCACATATATAA+AGG + tig0031947:38758-38777 Msa1447890:intron 35.0%
ATAAAGGATAGAGGTAGGTA+TGG + tig0031947:38774-38793 Msa1447890:intron 35.0%
TACTGCAATTCATTGCAACT+AGG - tig0031947:38810-38829 None:intergenic 35.0%
AATAACAGACCAATATGGCT+GGG - tig0031947:38923-38942 None:intergenic 35.0%
!!! AATGGCCTTTGAAGCATTTT+GGG - tig0031947:39109-39128 None:intergenic 35.0%
GGAATGAATGAAAAGGTCAA+TGG - tig0031947:39127-39146 None:intergenic 35.0%
GAGTAAGGGAATGAATGAAA+AGG - tig0031947:39134-39153 None:intergenic 35.0%
TTCAAATGGGTCATCAATTG+CGG - tig0031947:39165-39184 None:intergenic 35.0%
GTCAACTGTGTCAAGTATTA+TGG + tig0031947:39366-39385 Msa1447890:intron 35.0%
!!! TTTTTTTTTTTTGAGGGGGG+GGG - tig0031947:39437-39456 None:intergenic 35.0%
TTGTGAAAACAAGTGGGATA+CGG - tig0031947:39512-39531 None:intergenic 35.0%
CCTTGATTGTGAAAACAAGT+GGG - tig0031947:39518-39537 None:intergenic 35.0%
TCCTTGATTGTGAAAACAAG+TGG - tig0031947:39519-39538 None:intergenic 35.0%
!! ACTTGTTTTCACAATCAAGG+AGG + tig0031947:39518-39537 Msa1447890:intron 35.0%
ATTAAGAATTATTGGCCAGC+TGG - tig0031947:39549-39568 None:intergenic 35.0%
! GTATTCATTTGATAGCATGG+GGG + tig0031947:39630-39649 Msa1447890:intron 35.0%
! TATTCATTTGATAGCATGGG+GGG + tig0031947:39631-39650 Msa1447890:intron 35.0%
AGATCGGAATTGCATTAACA+TGG - tig0031947:39719-39738 None:intergenic 35.0%
TGACAAAGTTGCATCAAGAT+CGG - tig0031947:39735-39754 None:intergenic 35.0%
ATTCTTTCCAACACCTTGTA+AGG + tig0031947:39755-39774 Msa1447890:intron 35.0%
! GAGCTTACAAATTGTTTCTC+AGG + tig0031947:39909-39928 Msa1447890:intron 35.0%
TAGTAATATGGGAGAACCTT+GGG - tig0031947:39971-39990 None:intergenic 35.0%
TCCCATATTACTAGAAGTTC+TGG + tig0031947:39978-39997 Msa1447890:intron 35.0%
CACCAGAACTTCTAGTAATA+TGG - tig0031947:39983-40002 None:intergenic 35.0%
CCATAATACAAATTGCAGCT+AGG - tig0031947:40014-40033 None:intergenic 35.0%
CCTAGCTGCAATTTGTATTA+TGG + tig0031947:40011-40030 Msa1447890:intron 35.0%
GATACAAGTTCAGTTCTTGA+TGG - tig0031947:40090-40109 None:intergenic 35.0%
AAGGATAACTGGATAAGGTT+TGG - tig0031947:40198-40217 None:intergenic 35.0%
GTGACAGTGTTGTAAAATAG+TGG + tig0031947:40260-40279 Msa1447890:intron 35.0%
CGTTTGACAAAATTACTAGG+TGG + tig0031947:40427-40446 Msa1447890:intron 35.0%
TGGTCTGTAAGTTGTTCATA+TGG + tig0031947:40447-40466 Msa1447890:intron 35.0%
GTTCATATGGCAAAGATAGT+AGG + tig0031947:40460-40479 Msa1447890:intron 35.0%
!!! ATCAGGGAGGTAAGATTTTT+TGG - tig0031947:40543-40562 None:intergenic 35.0%
GGACAGTTAATTAGATGGTA+GGG + tig0031947:40620-40639 Msa1447890:intron 35.0%
GAAAGAATGAGAAAGAACAG+GGG + tig0031947:40711-40730 Msa1447890:intron 35.0%
GGATATAGAATAAAGGGGAT+TGG - tig0031947:40945-40964 None:intergenic 35.0%
GTATCATCATCAGATACATG+TGG - tig0031947:41031-41050 None:intergenic 35.0%
AATAACTAACAAGAGAGACC+AGG - tig0031947:41107-41126 None:intergenic 35.0%
TGCTTTGCAACAAAAATGCA+CGG - tig0031947:41190-41209 None:intergenic 35.0%
AAGACTTTCCATCTTCTGTT+GGG - tig0031947:41492-41511 None:intergenic 35.0%
AAAGACTTTCCATCTTCTGT+TGG - tig0031947:41493-41512 None:intergenic 35.0%
TGTAGAAAATGCATTCACTG+AGG + tig0031947:41567-41586 Msa1447890:CDS 35.0%
TTTATTGTCTGTCCTACAGA+CGG - tig0031947:41667-41686 None:intergenic 35.0%
ACAGACAATAAACGTGAAAG+AGG + tig0031947:41675-41694 Msa1447890:CDS 35.0%
AAACGTGAAAGAGGATTCTT+CGG + tig0031947:41684-41703 Msa1447890:CDS 35.0%
!!! TCTTCGGTTTTGAAGAGATT+TGG + tig0031947:41700-41719 Msa1447890:CDS 35.0%
AGACATTTACAAGATGACAC+AGG - tig0031947:41772-41791 None:intergenic 35.0%
!! CATAAGGCTAGTCTTACATA+TGG + tig0031947:41814-41833 Msa1447890:three_prime_UTR 35.0%
!!! GCTAGTCTTACATATGGTTT+TGG + tig0031947:41820-41839 Msa1447890:three_prime_UTR 35.0%
GTCGAAAAAGGAGAAAAGTG+TGG + tig0031947:35797-35816 Msa1447890:five_prime_UTR 40.0%
AAAATGCGTTGTTCCGGAAA+TGG - tig0031947:35856-35875 None:intergenic 40.0%
TGTAACGGTAGAATGAAGGA+GGG - tig0031947:35929-35948 None:intergenic 40.0%
ATGTAACGGTAGAATGAAGG+AGG - tig0031947:35930-35949 None:intergenic 40.0%
CACTTGTTCTTCTTCAACCA+TGG + tig0031947:35990-36009 Msa1447890:exon 40.0%
AGCGAATTCAACACCAATAG+TGG - tig0031947:36142-36161 None:intergenic 40.0%
AGCATCAACAGTCAAACTCT+TGG - tig0031947:36166-36185 None:intergenic 40.0%
ACAATCAATCGGGATACGAA+AGG - tig0031947:36430-36449 None:intergenic 40.0%
TACACGGACAGTGTAGAATT+CGG + tig0031947:36585-36604 Msa1447890:intron 40.0%
! TCAATCATTTTGGACATCGG+TGG + tig0031947:36638-36657 Msa1447890:intron 40.0%
! CAATCATTTTGGACATCGGT+GGG + tig0031947:36639-36658 Msa1447890:intron 40.0%
!! CTGCACTTTTTGGACCTAAT+CGG - tig0031947:36668-36687 None:intergenic 40.0%
GGAAGTCGTTCGATAAAGAT+TGG - tig0031947:36712-36731 None:intergenic 40.0%
TTCATATACACTGTCGGATC+CGG - tig0031947:36780-36799 None:intergenic 40.0%
!! CAAGTGGTGTTGTCAAATAG+TGG + tig0031947:36967-36986 Msa1447890:intron 40.0%
TCAGTAAAGCTGACATTCCT+CGG - tig0031947:37043-37062 None:intergenic 40.0%
! TACGGCATCTGTGGATTTTA+AGG - tig0031947:37087-37106 None:intergenic 40.0%
!! GTTGACTTGCTTTATGACCA+TGG + tig0031947:37112-37131 Msa1447890:intron 40.0%
!! GAGTATTGTGTTGATGACAC+TGG + tig0031947:37163-37182 Msa1447890:intron 40.0%
!! TATTGTGTTGATGACACTGG+TGG + tig0031947:37166-37185 Msa1447890:intron 40.0%
ACAAGTTACAACAACCCAAC+TGG + tig0031947:37380-37399 Msa1447890:intron 40.0%
AAATATGTTCAGGGCCAGTT+GGG - tig0031947:37397-37416 None:intergenic 40.0%
GCAAAGGGTGAAATATGTTC+AGG - tig0031947:37407-37426 None:intergenic 40.0%
!!! ACACACGATTTTGACTACCA+TGG - tig0031947:37461-37480 None:intergenic 40.0%
ACACAAGAGAAATACTTGCC+TGG + tig0031947:37530-37549 Msa1447890:intron 40.0%
CACAAGAGAAATACTTGCCT+GGG + tig0031947:37531-37550 Msa1447890:intron 40.0%
! TTTTATCTATGCTTGTGCCC+AGG - tig0031947:37551-37570 None:intergenic 40.0%
!! CAATCGGGTTTTGGTGAAAT+CGG + tig0031947:37740-37759 Msa1447890:intron 40.0%
!! AATCGGGTTTTGGTGAAATC+GGG + tig0031947:37741-37760 Msa1447890:intron 40.0%
CGAATCTGCAATTAACCAGT+GGG - tig0031947:37777-37796 None:intergenic 40.0%
ACGAATCTGCAATTAACCAG+TGG - tig0031947:37778-37797 None:intergenic 40.0%
TTCGTATGATCTGCGATTTC+TGG + tig0031947:37800-37819 Msa1447890:intron 40.0%
TCGTATGATCTGCGATTTCT+GGG + tig0031947:37801-37820 Msa1447890:intron 40.0%
AACGACCCATTTCCTATTAG+TGG + tig0031947:37892-37911 Msa1447890:intron 40.0%
GTGGGCCTATCTGAAAAAAT+AGG + tig0031947:37943-37962 Msa1447890:intron 40.0%
AAACACAAGTTACTCATGGG+CGG + tig0031947:38056-38075 Msa1447890:intron 40.0%
ATGAGGTAGAAGCAGAGAAA+AGG - tig0031947:38082-38101 None:intergenic 40.0%
! TTTTCTCTGCTTCTACCTCA+TGG + tig0031947:38081-38100 Msa1447890:intron 40.0%
TATGCAGAATCATAAAGGGG+AGG - tig0031947:38412-38431 None:intergenic 40.0%
CGACATAGTGCTTATATGGT+TGG + tig0031947:38492-38511 Msa1447890:intron 40.0%
CTTATGATCAAAGACGTGCA+TGG + tig0031947:38591-38610 Msa1447890:intron 40.0%
AGTGTCATGTTGTCAGACAT+CGG - tig0031947:38630-38649 None:intergenic 40.0%
CAACATGACACTGTCACATA+TGG + tig0031947:38638-38657 Msa1447890:intron 40.0%
TAATCACCAGAAGAACAGGA+GGG - tig0031947:38863-38882 None:intergenic 40.0%
ATAATCACCAGAAGAACAGG+AGG - tig0031947:38864-38883 None:intergenic 40.0%
GTGATAATCACCAGAAGAAC+AGG - tig0031947:38867-38886 None:intergenic 40.0%
AGATAGTTTCCCAGCCATAT+TGG + tig0031947:38911-38930 Msa1447890:intron 40.0%
CAATAACAGACCAATATGGC+TGG - tig0031947:38924-38943 None:intergenic 40.0%
! ACTGTACATTTTCCTACACC+CGG - tig0031947:39027-39046 None:intergenic 40.0%
!!! ATGGCCTTTGAAGCATTTTG+GGG - tig0031947:39108-39127 None:intergenic 40.0%
!!! CAATGGCCTTTGAAGCATTT+TGG - tig0031947:39110-39129 None:intergenic 40.0%
TCAAATGGGTCATCAATTGC+GGG - tig0031947:39164-39183 None:intergenic 40.0%
TGTCGTTAGATTTGTCTCGA+TGG + tig0031947:39261-39280 Msa1447890:intron 40.0%
GTCGTTAGATTTGTCTCGAT+GGG + tig0031947:39262-39281 Msa1447890:intron 40.0%
CTGTGTCAAGTATTATGGGA+CGG + tig0031947:39371-39390 Msa1447890:intron 40.0%
!!! TTTTTTTTTTTGAGGGGGGG+GGG - tig0031947:39436-39455 None:intergenic 40.0%
GATACGGCTACTAGTGTTAA+AGG - tig0031947:39496-39515 None:intergenic 40.0%
!! CCCACTTGTTTTCACAATCA+AGG + tig0031947:39515-39534 Msa1447890:intron 40.0%
! TCTAGTACTGAGATGTGTTC+TGG + tig0031947:39585-39604 Msa1447890:intron 40.0%
! CTAGTACTGAGATGTGTTCT+GGG + tig0031947:39586-39605 Msa1447890:intron 40.0%
TTACAGACCTTACAAGGTGT+TGG - tig0031947:39765-39784 None:intergenic 40.0%
! GGAAGAAAGAGATTAGTTGC+TGG - tig0031947:39940-39959 None:intergenic 40.0%
AGTAATATGGGAGAACCTTG+GGG - tig0031947:39970-39989 None:intergenic 40.0%
CTAGTAATATGGGAGAACCT+TGG - tig0031947:39972-39991 None:intergenic 40.0%
CAAACGTGAATCGCAGAAAA+TGG - tig0031947:40413-40432 None:intergenic 40.0%
TGGCAAAGATAGTAGGATGT+AGG + tig0031947:40467-40486 Msa1447890:intron 40.0%
GGGACAGTTAATTAGATGGT+AGG + tig0031947:40619-40638 Msa1447890:intron 40.0%
GTTGTAGTAGGGGAAATACT+TGG - tig0031947:40809-40828 None:intergenic 40.0%
TATGAGGATGCAAGGATAGA+GGG - tig0031947:40878-40897 None:intergenic 40.0%
ATATGAGGATGCAAGGATAG+AGG - tig0031947:40879-40898 None:intergenic 40.0%
ATTGGAGTAGTAAGAGCAGT+TGG - tig0031947:40927-40946 None:intergenic 40.0%
CTCAATATATTCTGCGGTAG+TGG + tig0031947:41064-41083 Msa1447890:intron 40.0%
ATTTCTCCGCCCATTGTTAA+CGG - tig0031947:41233-41252 None:intergenic 40.0%
GAACTGTGTGCTTCTGTAAT+AGG + tig0031947:41281-41300 Msa1447890:intron 40.0%
TACTTGTCTATGATGTCACC+AGG + tig0031947:41350-41369 Msa1447890:CDS 40.0%
TCACACAGACCCTAATATTG+TGG + tig0031947:41420-41439 Msa1447890:CDS 40.0%
! ATGGAAAGTCTTTTGCAGAG+AGG + tig0031947:41500-41519 Msa1447890:CDS 40.0%
! TGGAAAGTCTTTTGCAGAGA+GGG + tig0031947:41501-41520 Msa1447890:CDS 40.0%
TTATTGTCTGTCCTACAGAC+GGG - tig0031947:41666-41685 None:intergenic 40.0%
CATCTTGTAAATGTCTGCAC+TGG + tig0031947:41776-41795 Msa1447890:three_prime_UTR 40.0%
AATCCAGGTTGCTCCATTTC+CGG + tig0031947:35840-35859 Msa1447890:five_prime_UTR 45.0%
AGGAGGGAATTTCGGTGAAT+TGG - tig0031947:35913-35932 None:intergenic 45.0%
TGTTCTTCTTCAACCATGGC+TGG + tig0031947:35994-36013 Msa1447890:exon 45.0%
!! CTAGTTCTAATCGGCGATTC+AGG + tig0031947:36054-36073 Msa1447890:CDS 45.0%
CGTGATTCACATACTACTGC+AGG - tig0031947:36615-36634 None:intergenic 45.0%
ATGCAAGAAATCCTGACTGC+AGG + tig0031947:36750-36769 Msa1447890:intron 45.0%
TGCAAGAAATCCTGACTGCA+GGG + tig0031947:36751-36770 Msa1447890:intron 45.0%
TAGTGGCTATAGTGGCACTA+TGG + tig0031947:36984-37003 Msa1447890:intron 45.0%
CACTATGGCGGTATGGTTTA+GGG + tig0031947:36999-37018 Msa1447890:intron 45.0%
CAACAAATGTACGGCATCTG+TGG - tig0031947:37096-37115 None:intergenic 45.0%
TCACGTATGTACATGGACCA+TGG - tig0031947:37132-37151 None:intergenic 45.0%
!! TCATTTCAGGAGGTTGGTGA+TGG - tig0031947:37287-37306 None:intergenic 45.0%
GAAATATGTTCAGGGCCAGT+TGG - tig0031947:37398-37417 None:intergenic 45.0%
GTGTGTACTCTTAATCGCTG+AGG - tig0031947:37512-37531 None:intergenic 45.0%
TTGGGCACACTCACATGAAA+TGG - tig0031947:37674-37693 None:intergenic 45.0%
! AGACTTGCTCCACACACAAT+CGG + tig0031947:37724-37743 Msa1447890:intron 45.0%
! TATGATCTGCGATTTCTGGG+TGG + tig0031947:37804-37823 Msa1447890:intron 45.0%
! ATGATCTGCGATTTCTGGGT+GGG + tig0031947:37805-37824 Msa1447890:intron 45.0%
GAAAAGGGGTTATGTAAGCC+TGG - tig0031947:37854-37873 None:intergenic 45.0%
! GGCTTACATAACCCCTTTTC+TGG + tig0031947:37854-37873 Msa1447890:intron 45.0%
!! ATAACCCCTTTTCTGGTACG+CGG + tig0031947:37861-37880 Msa1447890:intron 45.0%
AACTACCTTGCGTGTAACCT+TGG + tig0031947:38445-38464 Msa1447890:intron 45.0%
TATTAGGCCTGAGTTCACCA+AGG - tig0031947:38465-38484 None:intergenic 45.0%
TGTCAGACATCGGTACATGT+CGG - tig0031947:38620-38639 None:intergenic 45.0%
AATCACCAGAAGAACAGGAG+GGG - tig0031947:38862-38881 None:intergenic 45.0%
TTGGGACAGGATTGGAACTA+GGG - tig0031947:38987-39006 None:intergenic 45.0%
ATTGGGACAGGATTGGAACT+AGG - tig0031947:38988-39007 None:intergenic 45.0%
!!! TTTGAAGCATTTTGGGGTGG+GGG - tig0031947:39102-39121 None:intergenic 45.0%
!!! CTTTGAAGCATTTTGGGGTG+GGG - tig0031947:39103-39122 None:intergenic 45.0%
!!! CCTTTGAAGCATTTTGGGGT+GGG - tig0031947:39104-39123 None:intergenic 45.0%
! GTGCATTGGCATGCGTAATA+AGG + tig0031947:39344-39363 Msa1447890:intron 45.0%
TGTCAAGTATTATGGGACGG+AGG + tig0031947:39374-39393 Msa1447890:intron 45.0%
GTCAAGTATTATGGGACGGA+GGG + tig0031947:39375-39394 Msa1447890:intron 45.0%
AAAGAGCTTCCTTGTCCTCA+AGG + tig0031947:39456-39475 Msa1447890:intron 45.0%
TTCTTTCCACCTTGAGGACA+AGG - tig0031947:39468-39487 None:intergenic 45.0%
TGTCCTCAAGGTGGAAAGAA+AGG + tig0031947:39468-39487 Msa1447890:intron 45.0%
TGCCACTACTTTCTTCAGCA+AGG + tig0031947:39668-39687 Msa1447890:intron 45.0%
CTCCTTGCTGAAGAAAGTAG+TGG - tig0031947:39673-39692 None:intergenic 45.0%
! GTGGACTGAGTTTCTCATTG+TGG + tig0031947:39789-39808 Msa1447890:intron 45.0%
TGGAGTCACAGATTGGGTAT+GGG - tig0031947:39847-39866 None:intergenic 45.0%
TTGGAGTCACAGATTGGGTA+TGG - tig0031947:39848-39867 None:intergenic 45.0%
GGGAATTGGAGTCACAGATT+GGG - tig0031947:39853-39872 None:intergenic 45.0%
AGGGAATTGGAGTCACAGAT+TGG - tig0031947:39854-39873 None:intergenic 45.0%
! CCATAGCTCTATGGCGTATT+GGG + tig0031947:40285-40304 Msa1447890:intron 45.0%
GCGATACGCGATTTAGTACA+AGG + tig0031947:40332-40351 Msa1447890:intron 45.0%
ACGTGAATCGCAGAAAATGG+TGG - tig0031947:40410-40429 None:intergenic 45.0%
CTCTAGTTAGTGTATCAGGG+AGG - tig0031947:40556-40575 None:intergenic 45.0%
ATGAGGATGCAAGGATAGAG+GGG - tig0031947:40877-40896 None:intergenic 45.0%
!!! GTTCTAGTTTTGAAGCAGCC+TGG + tig0031947:41086-41105 Msa1447890:intron 45.0%
GTTATGCCGTTAACAATGGG+CGG + tig0031947:41224-41243 Msa1447890:intron 45.0%
ACACAGTTCAAGTGAGTAGC+AGG - tig0031947:41270-41289 None:intergenic 45.0%
AGTAAGCACTAGTGATGGCA+CGG - tig0031947:41309-41328 None:intergenic 45.0%
TCGGTAGTAAGCACTAGTGA+TGG - tig0031947:41314-41333 None:intergenic 45.0%
ATCACTAGTGCTTACTACCG+AGG + tig0031947:41313-41332 Msa1447890:CDS 45.0%
CTTCATGGAGACTTCTGCTT+TGG + tig0031947:41534-41553 Msa1447890:CDS 45.0%
CTGCTTTCTTGCTCACTATG+CGG - tig0031947:41609-41628 None:intergenic 45.0%
GAGCAAGAAAGCAGTTGAAG+CGG + tig0031947:41615-41634 Msa1447890:CDS 45.0%
AGCAAGAAAGCAGTTGAAGC+GGG + tig0031947:41616-41635 Msa1447890:CDS 45.0%
ATTTGGATGCTGCTCGAACT+AGG + tig0031947:41717-41736 Msa1447890:CDS 45.0%
GGTGCTTCATGTATGTCAGT+TGG + tig0031947:41738-41757 Msa1447890:exon 45.0%
!!! TTTTTTATTTATTTGAATTT+TGG + tig0031947:36266-36285 Msa1447890:intron 5.0%
CGAGGCTTACAGGTCGAAAA+AGG + tig0031947:35785-35804 Msa1447890:five_prime_UTR 50.0%
TACACGATTCCGCACAATCC+AGG + tig0031947:35825-35844 Msa1447890:five_prime_UTR 50.0%
ATGGAGCAACCTGGATTGTG+CGG - tig0031947:35837-35856 None:intergenic 50.0%
CTAATCGGCGATTCAGGTGT+TGG + tig0031947:36060-36079 Msa1447890:CDS 50.0%
! GCTCAGATTTGGGATACTGC+TGG + tig0031947:36198-36217 Msa1447890:CDS 50.0%
! GATTTGGGATACTGCTGGTC+AGG + tig0031947:36203-36222 Msa1447890:CDS 50.0%
ATCGGGATACGAAAGGAGCT+TGG - tig0031947:36423-36442 None:intergenic 50.0%
TGGCTATAGTGGCACTATGG+CGG + tig0031947:36987-37006 Msa1447890:intron 50.0%
ATAGTGGCACTATGGCGGTA+TGG + tig0031947:36992-37011 Msa1447890:intron 50.0%
GCACTATGGCGGTATGGTTT+AGG + tig0031947:36998-37017 Msa1447890:intron 50.0%
GTAAAGCTGACATTCCTCGG+TGG - tig0031947:37040-37059 None:intergenic 50.0%
!! TCAGGAGGTTGGTGATGGTT+AGG - tig0031947:37282-37301 None:intergenic 50.0%
!! TTGATTTGGGGTTGTGCCCA+TGG + tig0031947:37700-37719 Msa1447890:intron 50.0%
GTGTGGAGCAAGTCTTCCAT+GGG - tig0031947:37719-37738 None:intergenic 50.0%
TGTGTGGAGCAAGTCTTCCA+TGG - tig0031947:37720-37739 None:intergenic 50.0%
! GACTTGCTCCACACACAATC+GGG + tig0031947:37725-37744 Msa1447890:intron 50.0%
! CTCCACACACAATCGGGTTT+TGG + tig0031947:37731-37750 Msa1447890:intron 50.0%
CACCAAAACCCGATTGTGTG+TGG - tig0031947:37736-37755 None:intergenic 50.0%
TTATGTAAGCCTGGCGTGTG+CGG - tig0031947:37845-37864 None:intergenic 50.0%
!! TAACCCCTTTTCTGGTACGC+GGG + tig0031947:37862-37881 Msa1447890:intron 50.0%
TCAACCCGCGTACCAGAAAA+GGG - tig0031947:37869-37888 None:intergenic 50.0%
ACGAGATACATGTGAGGCAC+AGG - tig0031947:38117-38136 None:intergenic 50.0%
ACACGCACGAGATACATGTG+AGG - tig0031947:38123-38142 None:intergenic 50.0%
GTTCACCAAGGTTACACGCA+AGG - tig0031947:38453-38472 None:intergenic 50.0%
CGTGTAACCTTGGTGAACTC+AGG + tig0031947:38455-38474 Msa1447890:intron 50.0%
TTATATGGTTGGCGTGCTGC+TGG + tig0031947:38503-38522 Msa1447890:intron 50.0%
GTCAGACATCGGTACATGTC+GGG - tig0031947:38619-38638 None:intergenic 50.0%
AATTCCCCCTCCTGTTCTTC+TGG + tig0031947:38854-38873 Msa1447890:intron 50.0%
ATCACCAGAAGAACAGGAGG+GGG - tig0031947:38861-38880 None:intergenic 50.0%
GTTCCAATCCTGTCCCAATG+CGG + tig0031947:38989-39008 Msa1447890:intron 50.0%
AATCCTGTCCCAATGCGGAT+GGG + tig0031947:38994-39013 Msa1447890:intron 50.0%
CCCACCCCAAAATGCTTCAA+AGG + tig0031947:39101-39120 Msa1447890:intron 50.0%
!!! GCCTTTGAAGCATTTTGGGG+TGG - tig0031947:39105-39124 None:intergenic 50.0%
ATGGGTCATCAATTGCGGGA+CGG - tig0031947:39160-39179 None:intergenic 50.0%
ATCAAGGAGGTTCAACCAGC+TGG + tig0031947:39531-39550 Msa1447890:intron 50.0%
! CTGAGATGTGTTCTGGGCTT+TGG + tig0031947:39592-39611 Msa1447890:intron 50.0%
TTTCTTCCTGTCTTGCCCCA+AGG + tig0031947:39952-39971 Msa1447890:intron 50.0%
! ATAGTGGCGCCATAGCTCTA+TGG + tig0031947:40276-40295 Msa1447890:intron 50.0%
! GCCATAGCTCTATGGCGTAT+TGG + tig0031947:40284-40303 Msa1447890:intron 50.0%
CCCAATACGCCATAGAGCTA+TGG - tig0031947:40288-40307 None:intergenic 50.0%
GGGAGAGAGACAGAGAGAAT+AGG + tig0031947:40731-40750 Msa1447890:intron 50.0%
! CAGTGGCTCTGTTGTAGTAG+GGG - tig0031947:40819-40838 None:intergenic 50.0%
! GCAGTGGCTCTGTTGTAGTA+GGG - tig0031947:40820-40839 None:intergenic 50.0%
! AGCAGTGGCTCTGTTGTAGT+AGG - tig0031947:40821-40840 None:intergenic 50.0%
TGAGGATGCAAGGATAGAGG+GGG - tig0031947:40876-40895 None:intergenic 50.0%
TCGCAACTCTTTCAACCACC+TGG - tig0031947:41398-41417 None:intergenic 50.0%
TTGGGACAGCAACAAGGTGT+CGG - tig0031947:41474-41493 None:intergenic 50.0%
CTTCTGTTGGGACAGCAACA+AGG - tig0031947:41480-41499 None:intergenic 50.0%
GTTGCTGTCCCAACAGAAGA+TGG + tig0031947:41481-41500 Msa1447890:CDS 50.0%
GAGGGAGTCTCTCTACTTCA+TGG + tig0031947:41519-41538 Msa1447890:CDS 50.0%
AAAGCAGTTGAAGCGGGTGA+AGG + tig0031947:41622-41641 Msa1447890:CDS 50.0%
GTTCCGGAAATGGAGCAACC+TGG - tig0031947:35846-35865 None:intergenic 55.0%
GTCTGCTCTGTATCCAGCCA+TGG - tig0031947:36010-36029 None:intergenic 55.0%
GGGATACTGCTGGTCAGGAA+AGG + tig0031947:36208-36227 Msa1447890:CDS 55.0%
ACATCGGTGGGTGTCCGATT+AGG + tig0031947:36651-36670 Msa1447890:intron 55.0%
AATCCTGACTGCAGGGAAGC+CGG + tig0031947:36758-36777 Msa1447890:intron 55.0%
!! CGGGTTTTGGTGAAATCGGG+TGG + tig0031947:37744-37763 Msa1447890:intron 55.0%
TCGGGTGGAATCAATCCCAC+TGG + tig0031947:37759-37778 Msa1447890:intron 55.0%
CAACCCGCGTACCAGAAAAG+GGG - tig0031947:37868-37887 None:intergenic 55.0%
CTCAACCCGCGTACCAGAAA+AGG - tig0031947:37870-37889 None:intergenic 55.0%
ACAGGCAGAGAAAGGCCATG+AGG - tig0031947:38099-38118 None:intergenic 55.0%
TGTGAGGCACAGGCAGAGAA+AGG - tig0031947:38107-38126 None:intergenic 55.0%
CATCCGCATTGGGACAGGAT+TGG - tig0031947:38995-39014 None:intergenic 55.0%
CAATCCTGTCCCAATGCGGA+TGG + tig0031947:38993-39012 Msa1447890:intron 55.0%
GTGTTGCACCCATCCGCATT+GGG - tig0031947:39005-39024 None:intergenic 55.0%
AATGCGGATGGGTGCAACAC+CGG + tig0031947:39005-39024 Msa1447890:intron 55.0%
GTCATCAATTGCGGGACGGA+GGG - tig0031947:39156-39175 None:intergenic 55.0%
GAGCTTCCTTGTCCTCAAGG+TGG + tig0031947:39459-39478 Msa1447890:intron 55.0%
GCGCCTTTCTTTCCACCTTG+AGG - tig0031947:39474-39493 None:intergenic 55.0%
! GATGTGTTCTGGGCTTTGGC+TGG + tig0031947:39596-39615 Msa1447890:intron 55.0%
GCTTACTACCGAGGAGCTGT+CGG + tig0031947:41322-41341 Msa1447890:CDS 55.0%
!! GTAAAGCACCGACAGCTCCT+CGG - tig0031947:41333-41352 None:intergenic 55.0%
GTTCTCAAATGTGGCACGCC+TGG - tig0031947:41371-41390 None:intergenic 55.0%
CCTGGCAGCGTTCTCAAATG+TGG - tig0031947:41380-41399 None:intergenic 55.0%
CCACATTTGAGAACGCTGCC+AGG + tig0031947:41377-41396 Msa1447890:CDS 55.0%
CATTTGAGAACGCTGCCAGG+TGG + tig0031947:41380-41399 Msa1447890:CDS 55.0%
CTGGGTGGGAGTTGCGACAA+CGG + tig0031947:37819-37838 Msa1447890:intron 60.0%
! GGTGTTGCACCCATCCGCAT+TGG - tig0031947:39006-39025 None:intergenic 60.0%
ATGCGGATGGGTGCAACACC+GGG + tig0031947:39006-39025 Msa1447890:intron 60.0%
ATGGGTGCAACACCGGGTGT+AGG + tig0031947:39012-39031 Msa1447890:intron 60.0%
TTGCGGGACGGAGGGAGTAA+GGG - tig0031947:39148-39167 None:intergenic 60.0%
ATTGCGGGACGGAGGGAGTA+AGG - tig0031947:39149-39168 None:intergenic 60.0%
GGTCATCAATTGCGGGACGG+AGG - tig0031947:39157-39176 None:intergenic 60.0%
GGAGAACCTTGGGGCAAGAC+AGG - tig0031947:39961-39980 None:intergenic 60.0%
GCAGTTGAAGCGGGTGAAGG+TGG + tig0031947:41625-41644 Msa1447890:CDS 60.0%
TCCTCGTCAGTCCCGTCTGT+AGG + tig0031947:41652-41671 Msa1447890:CDS 60.0%
TCCTACAGACGGGACTGACG+AGG - tig0031947:41656-41675 None:intergenic 60.0%
GATCCGGCTTCCCTGCAGTC+AGG - tig0031947:36764-36783 None:intergenic 65.0%
GCACCCATCCGCATTGGGAC+AGG - tig0031947:39000-39019 None:intergenic 65.0%
CGACAACGGCCGCACACGCC+AGG + tig0031947:37833-37852 Msa1447890:intron 75.0%
Chromosome Type Strat End Strand Name
tig0031947 gene 35785 41867 35785 ID=Msa1447890;Name=Msa1447890
tig0031947 mRNA 35785 41867 35785 ID=Msa1447890-mRNA-1;Parent=Msa1447890;Name=Msa1447890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=224|1|1|1|0|1|2|129|218
tig0031947 exon 35785 36229 35785 ID=Msa1447890-mRNA-1:exon:16105;Parent=Msa1447890-mRNA-1
tig0031947 exon 41303 41867 41303 ID=Msa1447890-mRNA-1:exon:16106;Parent=Msa1447890-mRNA-1
tig0031947 five_prime_UTR 35785 36008 35785 ID=Msa1447890-mRNA-1:five_prime_utr;Parent=Msa1447890-mRNA-1
tig0031947 CDS 36009 36229 36009 ID=Msa1447890-mRNA-1:cds;Parent=Msa1447890-mRNA-1
tig0031947 CDS 41303 41738 41303 ID=Msa1447890-mRNA-1:cds;Parent=Msa1447890-mRNA-1
tig0031947 three_prime_UTR 41739 41867 41739 ID=Msa1447890-mRNA-1:three_prime_utr;Parent=Msa1447890-mRNA-1
Gene Sequence

>Msa1447890

ATGGCTGGATACAGAGCAGACGATGAATACGATTACCTTTTCAAACTAGTTCTAATCGGCGATTCAGGTGTTGGTAAATCCAACTTGCTTTCTAGATTCACTAGAAACGAGTTCAATTTGGAATCTAAATCCACTATTGGTGTTGAATTCGCTACCAAGAGTTTGACTGTTGATGCTAAAGTCATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAAAGGTACCGTGCCATCACTAGTGCTTACTACCGAGGAGCTGTCGGTGCTTTACTTGTCTATGATGTCACCAGGCGTGCCACATTTGAGAACGCTGCCAGGTGGTTGAAAGAGTTGCGAGATCACACAGACCCTAATATTGTGGTCATGCTTATTGGAAATAAGTCTGATCTCCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAGTCTTTTGCAGAGAGGGAGTCTCTCTACTTCATGGAGACTTCTGCTTTGGAAGCAACCAATGTAGAAAATGCATTCACTGAGGTTCTTTCTCAGATATACCGCATAGTGAGCAAGAAAGCAGTTGAAGCGGGTGAAGGTGGCAGTTCCTCGTCAGTCCCGTCTGTAGGACAGACAATAAACGTGAAAGAGGATTCTTCGGTTTTGAAGAGATTTGGATGCTGCTCGAACTAG

Protein sequence

>Msa1447890

MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLTVDAKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKKAVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN*