Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638890 | XP_024637973.1 | 96.317 | 706 | 18 | 4 | 1 | 700 | 100 | 803 | 0.0 | 1367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638890 | A0A396IBW1 | 96.317 | 706 | 18 | 4 | 1 | 700 | 100 | 803 | 0.0 | 1367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026710 | Msa0638890 | 0.806978 | 6.325451e-50 | -8.615850e-47 |
| Msa0059040 | Msa0638890 | 0.819866 | 9.273082e-53 | -8.615850e-47 |
| Msa0059110 | Msa0638890 | 0.820694 | 5.991924e-53 | -8.615850e-47 |
| Msa0115400 | Msa0638890 | 0.800084 | 1.701344e-48 | -8.615850e-47 |
| Msa0638890 | Msa0672550 | 0.815658 | 8.257230e-52 | -8.615850e-47 |
| Msa0638890 | Msa0694620 | 0.806035 | 1.000235e-49 | -8.615850e-47 |
| Msa0638890 | Msa1068870 | 0.810785 | 9.696134e-51 | -8.615850e-47 |
| Msa0638890 | Msa1180500 | 0.814224 | 1.718034e-51 | -8.615850e-47 |
| Msa0638890 | Msa1231840 | 0.800022 | 1.751203e-48 | -8.615850e-47 |
| Msa0638890 | Msa1274560 | 0.808590 | 2.873768e-50 | -8.615850e-47 |
| Msa0638890 | Msa1312520 | 0.819287 | 1.257288e-52 | -8.615850e-47 |
| Msa0179190 | Msa0638890 | 0.803768 | 2.977927e-49 | -8.615850e-47 |
| Msa0212930 | Msa0638890 | 0.811168 | 8.010703e-51 | -8.615850e-47 |
| Msa0481970 | Msa0638890 | 0.806575 | 7.695405e-50 | -8.615850e-47 |
| Msa0253200 | Msa0638890 | 0.816589 | 5.115572e-52 | -8.615850e-47 |
| Msa0292030 | Msa0638890 | 0.817927 | 2.558520e-52 | -8.615850e-47 |
| Msa0330310 | Msa0638890 | 0.821075 | 4.895181e-53 | -8.615850e-47 |
| Msa0510840 | Msa0638890 | 0.819837 | 9.415555e-53 | -8.615850e-47 |
| Msa0542490 | Msa0638890 | 0.800370 | 1.488064e-48 | -8.615850e-47 |
| Msa0556060 | Msa0638890 | 0.814779 | 1.294672e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638890 | MtrunA17_Chr4g0039731 | 96.317 | 706 | 18 | 4 | 1 | 700 | 100 | 803 | 0.0 | 1367 |
| Msa0638890 | MtrunA17_Chr3g0086081 | 34.211 | 228 | 133 | 3 | 84 | 302 | 7 | 226 | 5.53e-33 | 130 |
| Msa0638890 | MtrunA17_Chr1g0168171 | 55.556 | 81 | 29 | 3 | 135 | 209 | 2 | 81 | 2.82e-20 | 85.9 |
| Msa0638890 | MtrunA17_Chr8g0345501 | 23.183 | 289 | 196 | 6 | 86 | 366 | 429 | 699 | 6.22e-20 | 94.7 |
| Msa0638890 | MtrunA17_Chr1g0176161 | 27.746 | 346 | 215 | 11 | 58 | 375 | 148 | 486 | 8.17e-20 | 93.6 |
| Msa0638890 | MtrunA17_Chr4g0025081 | 31.086 | 267 | 150 | 10 | 60 | 299 | 223 | 482 | 2.14e-18 | 89.0 |
| Msa0638890 | MtrunA17_Chr2g0295581 | 44.565 | 92 | 49 | 1 | 77 | 168 | 48 | 137 | 2.29e-17 | 84.7 |
| Msa0638890 | MtrunA17_Chr1g0179631 | 29.046 | 241 | 149 | 6 | 79 | 303 | 526 | 760 | 3.41e-17 | 86.3 |
| Msa0638890 | MtrunA17_Chr7g0245281 | 46.988 | 83 | 42 | 1 | 241 | 323 | 24 | 104 | 4.50e-16 | 74.7 |
| Msa0638890 | MtrunA17_Chr4g0010341 | 30.216 | 139 | 88 | 2 | 66 | 195 | 185 | 323 | 1.30e-15 | 80.1 |
| Msa0638890 | MtrunA17_Chr2g0322881 | 24.771 | 327 | 216 | 10 | 64 | 370 | 331 | 647 | 1.18e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 219 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTCCATATGTGGAGTTT+TGG | 0.190669 | 4_3:+34515524 | None:intergenic |
| CTATCTCCTGCATCCCGTTC+TGG | 0.201986 | 4_3:+34514375 | None:intergenic |
| GTCTGAAACTTGGAGAGTTT+TGG | 0.224219 | 4_3:+34515383 | None:intergenic |
| CAAAGAATCATCAAGCTAAA+AGG | 0.225169 | 4_3:-34513146 | Msa0638890:CDS |
| CAAAGAATCATCAAGCTAAA+AGG | 0.225169 | 4_3:-34513437 | Msa0638890:CDS |
| CAAAGCAACATCATGCTAAA+AGG | 0.228413 | 4_3:-34513581 | Msa0638890:CDS |
| CTTTCAGCTTGATGATTCTT+TGG | 0.237633 | 4_3:+34513294 | None:intergenic |
| CAAAGCAGCGTCAAGCTAAA+AGG | 0.248224 | 4_3:-34513650 | Msa0638890:CDS |
| ATCCTCTGTATGAGGAGTTT+TGG | 0.284042 | 4_3:+34515425 | None:intergenic |
| CTTATACGGCCCTGTGGTCT+AGG | 0.301558 | 4_3:-34515336 | Msa0638890:CDS |
| GACGAAGACAATTTGTTAGA+TGG | 0.302419 | 4_3:-34513396 | Msa0638890:CDS |
| TTGACTAGAGATCTTTATAA+AGG | 0.315435 | 4_3:+34514811 | None:intergenic |
| CGCCATCCAGTCACACTTCC+AGG | 0.326768 | 4_3:-34515142 | Msa0638890:CDS |
| GAATATTGGTGGAAGTTGTT+TGG | 0.327898 | 4_3:-34515078 | Msa0638890:CDS |
| GTGCTGCGGCAGCCTCTTTA+CGG | 0.338605 | 4_3:+34514168 | None:intergenic |
| TCCTCCATATGAGGAACTTT+GGG | 0.343302 | 4_3:+34515486 | None:intergenic |
| AATATTGGTGGAAGTTGTTT+GGG | 0.347492 | 4_3:-34515077 | Msa0638890:CDS |
| AAAGAATCATCAAGCTAAAA+GGG | 0.374571 | 4_3:-34513145 | Msa0638890:CDS |
| AAAGAATCATCAAGCTAAAA+GGG | 0.374571 | 4_3:-34513436 | Msa0638890:CDS |
| GAAACAACATTATCAGCATT+TGG | 0.377989 | 4_3:-34514084 | Msa0638890:CDS |
| CAATATTCCCTTACATCCTC+TGG | 0.378318 | 4_3:+34515093 | None:intergenic |
| CTTGTGGTTTATATTTAAAT+CGG | 0.382135 | 4_3:-34512952 | Msa0638890:three_prime_UTR |
| TATCTCCTGCATCCCGTTCT+GGG | 0.384815 | 4_3:+34514376 | None:intergenic |
| CATTCTGCTTGTCTGAAACT+TGG | 0.385118 | 4_3:+34515373 | None:intergenic |
| AAGGAGGTACAAACACAAAA+TGG | 0.387875 | 4_3:-34514407 | Msa0638890:CDS |
| GAAAGAAACATCTAGCTCTA+AGG | 0.395879 | 4_3:-34513866 | Msa0638890:CDS |
| AACGGGATGCAGGAGATAGA+TGG | 0.396181 | 4_3:-34514371 | Msa0638890:CDS |
| GGAGGCTGCTGCAGCACGTC+AGG | 0.396719 | 4_3:-34514141 | Msa0638890:CDS |
| TTCCTCCATATGAGGAACTT+TGG | 0.401403 | 4_3:+34515485 | None:intergenic |
| CAGAGGATGTAAGGGAATAT+TGG | 0.403849 | 4_3:-34515092 | Msa0638890:CDS |
| GTCATTACCGTAGTTGAGTT+TGG | 0.405893 | 4_3:-34513062 | Msa0638890:exon |
| TGATCACACCCACCACTATA+AGG | 0.408691 | 4_3:+34514221 | None:intergenic |
| AAGAGTCGAGGTCGGTGTTA+TGG | 0.410049 | 4_3:-34514308 | Msa0638890:CDS |
| GTGAGACCCCAGAGGATGTA+AGG | 0.413212 | 4_3:-34515101 | Msa0638890:CDS |
| AGAGGCTGCCGCAGCACATC+AGG | 0.413600 | 4_3:-34514162 | Msa0638890:CDS |
| TCCAGGGTCCTTTCTATCGC+TGG | 0.416171 | 4_3:-34515125 | Msa0638890:CDS |
| GTTTCGACTCAGCTGCCTCC+TGG | 0.416729 | 4_3:+34514102 | None:intergenic |
| GGAGGAATCAGAAGAGGAGG+AGG | 0.416759 | 4_3:-34515469 | Msa0638890:CDS |
| ATAAAAGGAAGTCTGGCAAT+TGG | 0.418430 | 4_3:-34514565 | Msa0638890:CDS |
| TGCTTTGGTAAGACCCCGTC+TGG | 0.419898 | 4_3:+34513525 | None:intergenic |
| TATAAACCACAAGTTCAAAC+TGG | 0.421652 | 4_3:+34512962 | None:intergenic |
| TTAATGCAGGCTCAAGAACT+TGG | 0.423789 | 4_3:-34514626 | Msa0638890:intron |
| GGAGGCAGCCACAGCACGCC+AGG | 0.425194 | 4_3:-34514120 | Msa0638890:CDS |
| TGCTTTGGTAAAACCCCATC+TGG | 0.426446 | 4_3:+34513234 | None:intergenic |
| CGCAGGGGACGCCAATCAGC+AGG | 0.428309 | 4_3:-34513978 | Msa0638890:CDS |
| ATGGTAAGGCCTCCCAGAAC+GGG | 0.431393 | 4_3:-34514388 | Msa0638890:CDS |
| CTCTTTACGGACTGCATCAA+TGG | 0.432826 | 4_3:+34514181 | None:intergenic |
| GCTTGGGATCCTCGTGATCA+TGG | 0.433534 | 4_3:-34514974 | Msa0638890:CDS |
| AAAGAATCATCAAGCTGAAA+GGG | 0.439093 | 4_3:-34513292 | Msa0638890:CDS |
| AAAGCAACATCATGCTAAAA+GGG | 0.442573 | 4_3:-34513580 | Msa0638890:CDS |
| CTGATGGGAAGGTTCTTATA+CGG | 0.442619 | 4_3:-34515350 | Msa0638890:CDS |
| AAAGCAGCGTCAAGCTAAAA+GGG | 0.443246 | 4_3:-34513649 | Msa0638890:CDS |
| GCCACCCATAAAAGGAAGTC+TGG | 0.448504 | 4_3:-34514572 | Msa0638890:CDS |
| TAAAAGGAAGTCTGGCAATT+GGG | 0.451077 | 4_3:-34514564 | Msa0638890:CDS |
| ATCGAATAGCAGTAGACATA+TGG | 0.451262 | 4_3:-34515559 | None:intergenic |
| AACTCCACATATGGAGGTGC+AGG | 0.452320 | 4_3:-34515520 | Msa0638890:CDS |
| GCTCTAGAGCGCCAATCAGC+AGG | 0.461373 | 4_3:-34514026 | Msa0638890:CDS |
| TCTTCTGATTCCTCCATATG+AGG | 0.463683 | 4_3:+34515477 | None:intergenic |
| TTATTTCCAGTTTGAACTTG+TGG | 0.463871 | 4_3:-34512968 | Msa0638890:three_prime_UTR |
| CTCTCAAAAGTGAGGAAGAA+GGG | 0.464033 | 4_3:-34514899 | Msa0638890:CDS |
| GCAGCAGCAGGCGCCGCGCT+AGG | 0.466466 | 4_3:+34515174 | None:intergenic |
| GAAGGGTCTTAATGCCCATT+GGG | 0.467273 | 4_3:-34514843 | Msa0638890:CDS |
| TTCGCTGACTCAGGAGTCTC+GGG | 0.469281 | 4_3:-34514246 | Msa0638890:CDS |
| ACGAAGACAATTTGTTAGAT+GGG | 0.469400 | 4_3:-34513395 | Msa0638890:CDS |
| CATCCTCACTATGATAATGA+TGG | 0.471233 | 4_3:-34513339 | Msa0638890:CDS |
| TCTTCCTGCACCTCCATATG+TGG | 0.472883 | 4_3:+34515516 | None:intergenic |
| GGATCCCAAAGTTCCTCATA+TGG | 0.475777 | 4_3:-34515490 | Msa0638890:CDS |
| GGATCCCAAAACTCCACATA+TGG | 0.476165 | 4_3:-34515529 | Msa0638890:CDS |
| AAAGCATCATCAAGCTGAAA+GGG | 0.476885 | 4_3:-34513718 | Msa0638890:CDS |
| GCGTGTTTAATCGCAGCAGC+AGG | 0.479484 | 4_3:+34515162 | None:intergenic |
| ACGGTAATGACGACGGCGAC+AGG | 0.479899 | 4_3:+34513074 | None:intergenic |
| GTCTCACTCCAGCGATAGAA+AGG | 0.483175 | 4_3:+34515117 | None:intergenic |
| GGCTGCTGCAGCACGTCAGG+AGG | 0.484517 | 4_3:-34514138 | Msa0638890:CDS |
| CTATGATGATGAGGATTCGC+TGG | 0.489767 | 4_3:-34513754 | Msa0638890:CDS |
| CTTCGCTGACTCAGGAGTCT+CGG | 0.490441 | 4_3:-34514247 | Msa0638890:CDS |
| GGCCTCCCAGAACGGGATGC+AGG | 0.492623 | 4_3:-34514381 | Msa0638890:CDS |
| AGAAGGGGACGAGACCTCAT+TGG | 0.497085 | 4_3:-34514883 | Msa0638890:CDS |
| TCTTCTGAATCCTCTGTATG+AGG | 0.497193 | 4_3:+34515417 | None:intergenic |
| CAGTAGACATATGGAGGAGG+AGG | 0.497751 | 4_3:-34515550 | Msa0638890:exon |
| GAGCCTTGCGGCCTGTGGTG+TGG | 0.498769 | 4_3:+34514750 | None:intergenic |
| ATTGGATATGTGAAGAGGCT+TGG | 0.499061 | 4_3:-34514865 | Msa0638890:CDS |
| GGAGGAGGAATCAGAAGAGG+AGG | 0.501572 | 4_3:-34515454 | Msa0638890:CDS |
| GGAAGGGTCTTAATGCCCAT+TGG | 0.502764 | 4_3:-34514844 | Msa0638890:CDS |
| AAGGACCCTGGAAGTGTGAC+TGG | 0.505631 | 4_3:+34515136 | None:intergenic |
| CAAGTGCGAGTCAAGCTCGC+AGG | 0.505729 | 4_3:-34513947 | Msa0638890:CDS |
| CAAGTGTGAGTCAAGCTCGC+AGG | 0.505729 | 4_3:-34513995 | Msa0638890:CDS |
| AGCTGCCTCCTGGCGTGCTG+TGG | 0.510431 | 4_3:+34514112 | None:intergenic |
| GATATGTGAAGAGGCTTGGA+AGG | 0.511244 | 4_3:-34514861 | Msa0638890:CDS |
| TCAGACAAGCAGAATGCTGA+TGG | 0.511382 | 4_3:-34515366 | Msa0638890:CDS |
| ATCCTCACTATGATAATGAT+GGG | 0.512412 | 4_3:-34513338 | Msa0638890:CDS |
| CAAAGAATCATCAAGCTGAA+AGG | 0.512957 | 4_3:-34513293 | Msa0638890:CDS |
| AATATTCCCTTACATCCTCT+GGG | 0.513122 | 4_3:+34515094 | None:intergenic |
| CTAGATGTTTCTTTCTTCGA+CGG | 0.513717 | 4_3:+34513874 | None:intergenic |
| TTGTGAAAGCACCTGCTGAT+TGG | 0.515650 | 4_3:+34513967 | None:intergenic |
| AGAGGATTCAGAAGAGGAGG+AGG | 0.520308 | 4_3:-34515409 | Msa0638890:CDS |
| CTAAGAACTCGTCTAGTGAA+TGG | 0.521135 | 4_3:+34513901 | None:intergenic |
| AAAGGCTTCACCCTCCCAAT+GGG | 0.525570 | 4_3:+34514829 | None:intergenic |
| TGGTGTAACTTCGCTGACTC+AGG | 0.525580 | 4_3:-34514255 | Msa0638890:CDS |
| GGAGGAATCAGAAGAGGAGG+AGG | 0.525843 | 4_3:-34515451 | Msa0638890:CDS |
| ACGGGATGCAGGAGATAGAT+GGG | 0.528666 | 4_3:-34514370 | Msa0638890:CDS |
| AAGTGTGAGTCAAGCTCGCA+GGG | 0.528888 | 4_3:-34513994 | Msa0638890:CDS |
| ATGATGACGATTTGCCAGAC+GGG | 0.529560 | 4_3:-34513539 | Msa0638890:CDS |
| GCGAATCCTCGTCATTATCA+TGG | 0.530875 | 4_3:+34513475 | None:intergenic |
| ACATATGGAGGTGCAGGAAG+AGG | 0.531104 | 4_3:-34515514 | Msa0638890:CDS |
| TAAGACCTCGTCTAGTGAAT+CGG | 0.531398 | 4_3:+34513101 | None:intergenic |
| TTATACGGCCCTGTGGTCTA+GGG | 0.531997 | 4_3:-34515335 | Msa0638890:intron |
| ACGATGACGATTTGCCAGAT+GGG | 0.532630 | 4_3:-34513248 | Msa0638890:CDS |
| TTGTGAAAGCACCTGCTGAT+TGG | 0.534635 | 4_3:+34514015 | None:intergenic |
| AAGTGCGAGTCAAGCTCGCA+GGG | 0.535151 | 4_3:-34513946 | Msa0638890:CDS |
| CTTGGGATCCTCGTGATCAT+GGG | 0.539317 | 4_3:-34514973 | Msa0638890:CDS |
| TAAAGGCTTCACCCTCCCAA+TGG | 0.540341 | 4_3:+34514828 | None:intergenic |
| AGGATGTAAGGGAATATTGG+TGG | 0.540950 | 4_3:-34515089 | Msa0638890:CDS |
| GAAACTTGAATTGTGGAAAG+AGG | 0.542708 | 4_3:-34514342 | Msa0638890:CDS |
| AAAAGCATCATCAAGCTGAA+AGG | 0.548674 | 4_3:-34513719 | Msa0638890:CDS |
| GGCGGAGCAGTCCACACCAC+AGG | 0.552096 | 4_3:-34514761 | Msa0638890:CDS |
| TATAACTTACCCTAGACCAC+AGG | 0.552243 | 4_3:+34515326 | None:intergenic |
| CGATGACGATTTGCCAGATG+GGG | 0.554351 | 4_3:-34513247 | Msa0638890:CDS |
| CTCGGGAACCTTATAGTGGT+GGG | 0.556218 | 4_3:-34514229 | Msa0638890:CDS |
| TCTCGGGAACCTTATAGTGG+TGG | 0.557452 | 4_3:-34514230 | Msa0638890:CDS |
| GCTCTCAAAAGTGAGGAAGA+AGG | 0.557493 | 4_3:-34514900 | Msa0638890:CDS |
| CATTGATGCAGTCCGTAAAG+AGG | 0.559031 | 4_3:-34514180 | Msa0638890:CDS |
| TAATGCAGGCTCAAGAACTT+GGG | 0.559518 | 4_3:-34514625 | Msa0638890:intron |
| TAATGACGACGGCGACAGGC+TGG | 0.560490 | 4_3:+34513078 | None:intergenic |
| CGAAGACAATTTGTTAGATG+GGG | 0.565203 | 4_3:-34513394 | Msa0638890:CDS |
| GGGTCTTAATGCCCATTGGG+AGG | 0.566029 | 4_3:-34514840 | Msa0638890:CDS |
| GGCTGCCGCAGCACATCAGG+AGG | 0.566647 | 4_3:-34514159 | Msa0638890:CDS |
| GAGTCTCGGGAACCTTATAG+TGG | 0.570097 | 4_3:-34514233 | Msa0638890:CDS |
| GAATTGTGGAAAGAGGTTGC+TGG | 0.573145 | 4_3:-34514335 | Msa0638890:CDS |
| TACAGAGGATTCAGAAGAGG+AGG | 0.573871 | 4_3:-34515412 | Msa0638890:CDS |
| GGCAGCCACAGCACGCCAGG+AGG | 0.574306 | 4_3:-34514117 | Msa0638890:CDS |
| AATGGTAAGGCCTCCCAGAA+CGG | 0.574382 | 4_3:-34514389 | Msa0638890:CDS |
| GACGATGACGATTTGCCAGA+TGG | 0.574633 | 4_3:-34513249 | Msa0638890:CDS |
| TGATGAGGATTCACTAGATG+AGG | 0.576767 | 4_3:-34513679 | Msa0638890:CDS |
| ATCAAAACCAAACTCAACTA+CGG | 0.579654 | 4_3:+34513055 | None:intergenic |
| CAAGCAGAATGCTGATGGGA+AGG | 0.582859 | 4_3:-34515361 | Msa0638890:CDS |
| GGTACAAACACAAAATGGTA+AGG | 0.583099 | 4_3:-34514402 | Msa0638890:CDS |
| CCGCAAGGCTCATGTTGATG+TGG | 0.585666 | 4_3:-34514738 | Msa0638890:CDS |
| AGCAGCCTCCTGATGTGCTG+CGG | 0.589638 | 4_3:+34514154 | None:intergenic |
| GAATCGGTGTCATCATAAAG+AGG | 0.589843 | 4_3:+34513117 | None:intergenic |
| TGAGACCCCAGAGGATGTAA+GGG | 0.590171 | 4_3:-34515100 | Msa0638890:CDS |
| TCAAGAACTTGGGCGGTCTG+TGG | 0.591187 | 4_3:-34514615 | Msa0638890:CDS |
| TTGTAGGTGGGCTCCTAGCG+CGG | 0.605332 | 4_3:-34515187 | Msa0638890:intron |
| TATGGAGGTGCAGGAAGAGG+AGG | 0.606341 | 4_3:-34515511 | Msa0638890:CDS |
| AACATGAGCCTTGCGGCCTG+TGG | 0.606679 | 4_3:+34514745 | None:intergenic |
| ACAATATCACGATCGTCTGA+AGG | 0.608845 | 4_3:-34514426 | Msa0638890:CDS |
| AGAGGAGGAGGAATCAGAAG+AGG | 0.608992 | 4_3:-34515457 | Msa0638890:CDS |
| TATGGAGGAATCAGAAGAGG+AGG | 0.610115 | 4_3:-34515472 | Msa0638890:CDS |
| AGTCCACACCACAGGCCGCA+AGG | 0.611297 | 4_3:-34514753 | Msa0638890:CDS |
| GGGCGACGAAACTTGAATTG+TGG | 0.613873 | 4_3:-34514349 | Msa0638890:CDS |
| ACATCCTCGCTACGATGATG+AGG | 0.614505 | 4_3:-34513694 | Msa0638890:CDS |
| ATATTGGTGGAAGTTGTTTG+GGG | 0.616097 | 4_3:-34515076 | Msa0638890:intron |
| TGTTGATGTGGCACTTAGCA+TGG | 0.616336 | 4_3:-34514726 | Msa0638890:intron |
| TAGCAGTAGACATATGGAGG+AGG | 0.616879 | 4_3:-34515553 | None:intergenic |
| ACATTATCACTATGATGATG+AGG | 0.618914 | 4_3:-34513763 | Msa0638890:CDS |
| TTACATATGTTGTTTGAGAG+CGG | 0.620785 | 4_3:+34514534 | None:intergenic |
| GGTCTTAATGCCCATTGGGA+GGG | 0.621508 | 4_3:-34514839 | Msa0638890:CDS |
| TCCCAAAACTCCTCATACAG+AGG | 0.621524 | 4_3:-34515427 | Msa0638890:CDS |
| CAGATATGCTCTCAAAAGTG+AGG | 0.622705 | 4_3:-34514907 | Msa0638890:CDS |
| ACCTCATTGGATATGTGAAG+AGG | 0.624423 | 4_3:-34514870 | Msa0638890:CDS |
| TCCTCGTCATTATCATGGTG+AGG | 0.625583 | 4_3:+34513480 | None:intergenic |
| GATGATGACGATTTGCCAGA+CGG | 0.628419 | 4_3:-34513540 | Msa0638890:CDS |
| GCCATCCAGTCACACTTCCA+GGG | 0.630208 | 4_3:-34515141 | Msa0638890:CDS |
| GAATAGCAGTAGACATATGG+AGG | 0.630715 | 4_3:-34515556 | None:intergenic |
| TCCTCATCATTATCATAGTG+AGG | 0.630997 | 4_3:+34513189 | None:intergenic |
| TTGATATACCCATGATCACG+AGG | 0.631630 | 4_3:+34514965 | None:intergenic |
| TGATGAGGATTCGCTACATG+AGG | 0.633190 | 4_3:-34513175 | Msa0638890:CDS |
| GCCTCTTCACATATCCAATG+AGG | 0.635189 | 4_3:+34514869 | None:intergenic |
| TCATACAGAGGATTCAGAAG+AGG | 0.636032 | 4_3:-34515415 | Msa0638890:CDS |
| TCCCAAAACTCCACATATGG+AGG | 0.637455 | 4_3:-34515526 | Msa0638890:CDS |
| TGATCATGCTATGCATCTAG+AGG | 0.639265 | 4_3:-34514204 | Msa0638890:CDS |
| TCCCCATCATTATCATAGTG+AGG | 0.639323 | 4_3:+34513336 | None:intergenic |
| CAGACAAGCAGAATGCTGAT+GGG | 0.640959 | 4_3:-34515365 | Msa0638890:CDS |
| AAGAATCATCAAGCTGAAAG+GGG | 0.641028 | 4_3:-34513291 | Msa0638890:CDS |
| TCCAGCGATAGAAAGGACCC+TGG | 0.641874 | 4_3:+34515124 | None:intergenic |
| TCATATGGAGGAATCAGAAG+AGG | 0.642617 | 4_3:-34515475 | Msa0638890:CDS |
| AAGCAACATCATGCTAAAAG+GGG | 0.645171 | 4_3:-34513579 | Msa0638890:CDS |
| ACAACATTATCAGCATTTGG+AGG | 0.645179 | 4_3:-34514081 | Msa0638890:CDS |
| AAGCATCATCAAGCTGAAAG+GGG | 0.649585 | 4_3:-34513717 | Msa0638890:CDS |
| ACCCTGGAAGTGTGACTGGA+TGG | 0.650411 | 4_3:+34515140 | None:intergenic |
| TCCCAAAGTTCCTCATATGG+AGG | 0.653546 | 4_3:-34515487 | Msa0638890:CDS |
| TCCTCACTATGATAATGATG+AGG | 0.654946 | 4_3:-34513190 | Msa0638890:CDS |
| CCACATCAACATGAGCCTTG+CGG | 0.654991 | 4_3:+34514738 | None:intergenic |
| CAAACTGGAAATAATTACCA+TGG | 0.657081 | 4_3:+34512977 | None:intergenic |
| CTCAACTACGGTAATGACGA+CGG | 0.657330 | 4_3:+34513067 | None:intergenic |
| ATATGTGAAGAGGCTTGGAA+GGG | 0.657558 | 4_3:-34514860 | Msa0638890:CDS |
| GCGAAGTTACACCACGACGG+AGG | 0.657766 | 4_3:+34514264 | None:intergenic |
| TGCAGGCTCAAGAACTTGGG+CGG | 0.659117 | 4_3:-34514622 | Msa0638890:intron |
| ATAACTTACCCTAGACCACA+GGG | 0.660044 | 4_3:+34515327 | None:intergenic |
| TTGTGGAAAGAGGTTGCTGG+TGG | 0.660274 | 4_3:-34514332 | Msa0638890:CDS |
| AAGAATCATCAAGCTAAAAG+GGG | 0.661347 | 4_3:-34513144 | Msa0638890:CDS |
| AAGAATCATCAAGCTAAAAG+GGG | 0.661347 | 4_3:-34513435 | Msa0638890:CDS |
| TTTGCTTTAAACCTCCGTCG+TGG | 0.663712 | 4_3:-34514275 | Msa0638890:CDS |
| TCGTCATCATCGTCATAGTG+AGG | 0.664947 | 4_3:+34513552 | None:intergenic |
| CTGGTGGAAAGAGTCGAGGT+CGG | 0.666255 | 4_3:-34514316 | Msa0638890:CDS |
| TCTCAAAAGTGAGGAAGAAG+GGG | 0.667382 | 4_3:-34514898 | Msa0638890:CDS |
| TGACGAGGATTCGCTACATG+AGG | 0.668713 | 4_3:-34513466 | Msa0638890:CDS |
| AAGCAGCGTCAAGCTAAAAG+GGG | 0.671751 | 4_3:-34513648 | Msa0638890:CDS |
| TTGTCTTCGTCATCATAGTG+AGG | 0.672385 | 4_3:+34513408 | None:intergenic |
| CGACGACGACTCTCTAGATG+AGG | 0.674837 | 4_3:-34513610 | Msa0638890:CDS |
| TCCTCACTATGATAATGATG+GGG | 0.674907 | 4_3:-34513337 | Msa0638890:CDS |
| CTCCTGCATCCCGTTCTGGG+AGG | 0.677042 | 4_3:+34514379 | None:intergenic |
| CGGGATGCAGGAGATAGATG+GGG | 0.677483 | 4_3:-34514369 | Msa0638890:CDS |
| GTTGCTGGTGGAAAGAGTCG+AGG | 0.681260 | 4_3:-34514320 | Msa0638890:CDS |
| TCATCGTCATCATCATAGTG+AGG | 0.683389 | 4_3:+34513264 | None:intergenic |
| GAATGGTCATCATCATAGCG+AGG | 0.683926 | 4_3:+34513918 | None:intergenic |
| ATATCACGATCGTCTGAAGG+AGG | 0.686760 | 4_3:-34514423 | Msa0638890:CDS |
| TCCTCACCATGATAATGACG+AGG | 0.694396 | 4_3:-34513481 | Msa0638890:CDS |
| GAATCCTCATCATCGTAGCG+AGG | 0.696997 | 4_3:+34513690 | None:intergenic |
| AGTGCGAGTCAAGCTCGCAG+GGG | 0.697262 | 4_3:-34513945 | Msa0638890:CDS |
| AAGGTTCTTATACGGCCCTG+TGG | 0.700616 | 4_3:-34515342 | Msa0638890:CDS |
| TGATGACGATTTGCCAGACG+GGG | 0.703928 | 4_3:-34513538 | Msa0638890:CDS |
| TGACACCGATTCACTAGACG+AGG | 0.704444 | 4_3:-34513106 | Msa0638890:CDS |
| AGTACAGTACGTCAACACAA+AGG | 0.713056 | 4_3:+34513001 | None:intergenic |
| AGTGTGAGTCAAGCTCGCAG+GGG | 0.725594 | 4_3:-34513993 | Msa0638890:CDS |
| ATATTCCCTTACATCCTCTG+GGG | 0.728189 | 4_3:+34515095 | None:intergenic |
| TGATGGGGATTCGTTACACG+AGG | 0.732844 | 4_3:-34513322 | Msa0638890:CDS |
| TCGCTGGAGTGAGACCCCAG+AGG | 0.762521 | 4_3:-34515109 | Msa0638890:CDS |
| GTTGACGTACTGTACTACCA+TGG | 0.762714 | 4_3:-34512994 | Msa0638890:three_prime_UTR |
| TCAGCGAAGTTACACCACGA+CGG | 0.764843 | 4_3:+34514261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGTTTTTTAATTTAATGC+AGG | - | chr4_3:34513856-34513875 | Msa0638890:CDS | 20.0% |
| !!! | TGATATTGTTTCTAGAAAAA+AGG | + | chr4_3:34514058-34514077 | None:intergenic | 20.0% |
| !! | CTTGTGGTTTATATTTAAAT+CGG | - | chr4_3:34515543-34515562 | Msa0638890:CDS | 20.0% |
| !!! | ATTTAGTTTGGACTTTTTGT+AGG | - | chr4_3:34513292-34513311 | Msa0638890:CDS | 25.0% |
| ! | TAACTAGTTATCGTTATGTA+GGG | + | chr4_3:34513478-34513497 | None:intergenic | 25.0% |
| !!! | ACTAGTTAGATTCCTTTTTT+AGG | - | chr4_3:34513490-34513509 | Msa0638890:CDS | 25.0% |
| ! | TTGACTAGAGATCTTTATAA+AGG | + | chr4_3:34513687-34513706 | None:intergenic | 25.0% |
| ! | AAACAACATATGTAAGTTGT+TGG | - | chr4_3:34513969-34513988 | Msa0638890:CDS | 25.0% |
| ! | CTCTTGAACAAAATGATATT+AGG | - | chr4_3:34514024-34514043 | Msa0638890:CDS | 25.0% |
| ! | AAAGAATCATCAAGCTAAAA+GGG | - | chr4_3:34515059-34515078 | Msa0638890:intron | 25.0% |
| ! | AAAGAATCATCAAGCTAAAA+GGG | - | chr4_3:34515059-34515078 | Msa0638890:intron | 25.0% |
| ! | TTGATGGTTGACATTTAGTT+TGG | - | chr4_3:34513280-34513299 | Msa0638890:CDS | 30.0% |
| AATATTGGTGGAAGTTGTTT+GGG | - | chr4_3:34513418-34513437 | Msa0638890:CDS | 30.0% | |
| AACTAGTTATCGTTATGTAG+GGG | + | chr4_3:34513477-34513496 | None:intergenic | 30.0% | |
| CTAACTAGTTATCGTTATGT+AGG | + | chr4_3:34513479-34513498 | None:intergenic | 30.0% | |
| AAGCAATCTTGTCCTAAAAA+AGG | + | chr4_3:34513505-34513524 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGACAAGATTGCT+TGG | - | chr4_3:34513504-34513523 | Msa0638890:CDS | 30.0% |
| !!! | TTTTTAGGACAAGATTGCTT+GGG | - | chr4_3:34513505-34513524 | Msa0638890:CDS | 30.0% |
| AAAAAGACGTTTCAAACAAG+AGG | - | chr4_3:34513551-34513570 | Msa0638890:CDS | 30.0% | |
| ! | TTACATATGTTGTTTGAGAG+CGG | + | chr4_3:34513964-34513983 | None:intergenic | 30.0% |
| GAAACAACATTATCAGCATT+TGG | - | chr4_3:34514411-34514430 | Msa0638890:CDS | 30.0% | |
| ! | ACATTATCACTATGATGATG+AGG | - | chr4_3:34514732-34514751 | Msa0638890:CDS | 30.0% |
| AAAGCAACATCATGCTAAAA+GGG | - | chr4_3:34514915-34514934 | Msa0638890:CDS | 30.0% | |
| !!! | CTTTTAGCTTGATGATTCTT+TGG | + | chr4_3:34515060-34515079 | None:intergenic | 30.0% |
| CAAAGAATCATCAAGCTAAA+AGG | - | chr4_3:34515058-34515077 | Msa0638890:intron | 30.0% | |
| AAGAATCATCAAGCTAAAAG+GGG | - | chr4_3:34515060-34515079 | Msa0638890:intron | 30.0% | |
| !! | ACGAAGACAATTTGTTAGAT+GGG | - | chr4_3:34515100-34515119 | Msa0638890:CDS | 30.0% |
| ! | ATCCTCACTATGATAATGAT+GGG | - | chr4_3:34515157-34515176 | Msa0638890:CDS | 30.0% |
| AAAGAATCATCAAGCTGAAA+GGG | - | chr4_3:34515203-34515222 | Msa0638890:intron | 30.0% | |
| !!! | CTTTTAGCTTGATGATTCTT+TGG | + | chr4_3:34515060-34515079 | None:intergenic | 30.0% |
| CAAAGAATCATCAAGCTAAA+AGG | - | chr4_3:34515058-34515077 | Msa0638890:intron | 30.0% | |
| AAGAATCATCAAGCTAAAAG+GGG | - | chr4_3:34515060-34515079 | Msa0638890:intron | 30.0% | |
| ATCAAAACCAAACTCAACTA+CGG | + | chr4_3:34515443-34515462 | None:intergenic | 30.0% | |
| CAAACTGGAAATAATTACCA+TGG | + | chr4_3:34515521-34515540 | None:intergenic | 30.0% | |
| TTATTTCCAGTTTGAACTTG+TGG | - | chr4_3:34515527-34515546 | Msa0638890:CDS | 30.0% | |
| TATAAACCACAAGTTCAAAC+TGG | + | chr4_3:34515536-34515555 | None:intergenic | 30.0% | |
| !! | TCTGAAACTTGGAGAGTTTT+GGG | + | chr4_3:34513114-34513133 | None:intergenic | 35.0% |
| ! | TAGTTTGGACTTTTTGTAGG+TGG | - | chr4_3:34513295-34513314 | Msa0638890:CDS | 35.0% |
| ! | AGTTTGGACTTTTTGTAGGT+GGG | - | chr4_3:34513296-34513315 | Msa0638890:CDS | 35.0% |
| AATATTCCCTTACATCCTCT+GGG | + | chr4_3:34513404-34513423 | None:intergenic | 35.0% | |
| GAATATTGGTGGAAGTTGTT+TGG | - | chr4_3:34513417-34513436 | Msa0638890:CDS | 35.0% | |
| ATATTGGTGGAAGTTGTTTG+GGG | - | chr4_3:34513419-34513438 | Msa0638890:CDS | 35.0% | |
| !! | CTTTTGAGAGCATATCTGAA+AGG | + | chr4_3:34513586-34513605 | None:intergenic | 35.0% |
| ACCAATCGTAATTCGTGTAA+AGG | - | chr4_3:34513713-34513732 | Msa0638890:CDS | 35.0% | |
| AATCGTAATTCGTGTAAAGG+CGG | - | chr4_3:34513716-34513735 | Msa0638890:CDS | 35.0% | |
| !! | TCTTTTTAGCCACCCATAAA+AGG | - | chr4_3:34513915-34513934 | Msa0638890:CDS | 35.0% |
| ! | ATTGCCAGACTTCCTTTTAT+GGG | + | chr4_3:34513930-34513949 | None:intergenic | 35.0% |
| ! | AATTGCCAGACTTCCTTTTA+TGG | + | chr4_3:34513931-34513950 | None:intergenic | 35.0% |
| ATAAAAGGAAGTCTGGCAAT+TGG | - | chr4_3:34513930-34513949 | Msa0638890:CDS | 35.0% | |
| TAAAAGGAAGTCTGGCAATT+GGG | - | chr4_3:34513931-34513950 | Msa0638890:CDS | 35.0% | |
| ! | AAGGAGGTACAAACACAAAA+TGG | - | chr4_3:34514088-34514107 | Msa0638890:CDS | 35.0% |
| GGTACAAACACAAAATGGTA+AGG | - | chr4_3:34514093-34514112 | Msa0638890:CDS | 35.0% | |
| GAAACTTGAATTGTGGAAAG+AGG | - | chr4_3:34514153-34514172 | Msa0638890:CDS | 35.0% | |
| ACAACATTATCAGCATTTGG+AGG | - | chr4_3:34514414-34514433 | Msa0638890:CDS | 35.0% | |
| CTAGATGTTTCTTTCTTCGA+CGG | + | chr4_3:34514624-34514643 | None:intergenic | 35.0% | |
| !! | GAAAGAAACATCTAGCTCTA+AGG | - | chr4_3:34514629-34514648 | Msa0638890:intron | 35.0% |
| ! | TCTTGTGAGCTTGATGTTTT+TGG | + | chr4_3:34514711-34514730 | None:intergenic | 35.0% |
| !! | AAAAGCATCATCAAGCTGAA+AGG | - | chr4_3:34514776-34514795 | Msa0638890:intron | 35.0% |
| ! | AAAGCATCATCAAGCTGAAA+GGG | - | chr4_3:34514777-34514796 | Msa0638890:intron | 35.0% |
| !! | CTTTTAGCATGATGTTGCTT+TGG | + | chr4_3:34514916-34514935 | None:intergenic | 35.0% |
| CAAAGCAACATCATGCTAAA+AGG | - | chr4_3:34514914-34514933 | Msa0638890:CDS | 35.0% | |
| AAGCAACATCATGCTAAAAG+GGG | - | chr4_3:34514916-34514935 | Msa0638890:CDS | 35.0% | |
| !!! | TTTTTAGCTTGTCGTTGCTT+TGG | + | chr4_3:34514988-34515007 | None:intergenic | 35.0% |
| !! | GACGAAGACAATTTGTTAGA+TGG | - | chr4_3:34515099-34515118 | Msa0638890:CDS | 35.0% |
| !! | CGAAGACAATTTGTTAGATG+GGG | - | chr4_3:34515101-34515120 | Msa0638890:CDS | 35.0% |
| !!! | TTTTTAGCTTGAGGTTGCTT+TGG | + | chr4_3:34515132-34515151 | None:intergenic | 35.0% |
| ! | CATCCTCACTATGATAATGA+TGG | - | chr4_3:34515156-34515175 | Msa0638890:CDS | 35.0% |
| ! | TCCTCACTATGATAATGATG+GGG | - | chr4_3:34515158-34515177 | Msa0638890:CDS | 35.0% |
| ! | CTTTCAGCTTGATGATTCTT+TGG | + | chr4_3:34515204-34515223 | None:intergenic | 35.0% |
| CAAAGAATCATCAAGCTGAA+AGG | - | chr4_3:34515202-34515221 | Msa0638890:intron | 35.0% | |
| AAGAATCATCAAGCTGAAAG+GGG | - | chr4_3:34515204-34515223 | Msa0638890:intron | 35.0% | |
| !!! | TTTTTAGCTTGACGTTGCTT+TGG | + | chr4_3:34515279-34515298 | None:intergenic | 35.0% |
| ! | TCCTCACTATGATAATGATG+AGG | - | chr4_3:34515158-34515177 | Msa0638890:CDS | 35.0% |
| TCCTCATCATTATCATAGTG+AGG | + | chr4_3:34515309-34515328 | None:intergenic | 35.0% | |
| ! | ACCTCCATATGTGGAGTTTT+GGG | + | chr4_3:34512973-34512992 | None:intergenic | 40.0% |
| TCCTCCATATGAGGAACTTT+GGG | + | chr4_3:34513012-34513031 | None:intergenic | 40.0% | |
| TTCCTCCATATGAGGAACTT+TGG | + | chr4_3:34513013-34513032 | None:intergenic | 40.0% | |
| TCTTCTGATTCCTCCATATG+AGG | + | chr4_3:34513021-34513040 | None:intergenic | 40.0% | |
| TCATATGGAGGAATCAGAAG+AGG | - | chr4_3:34513020-34513039 | Msa0638890:three_prime_UTR | 40.0% | |
| ! | TCCTCTGTATGAGGAGTTTT+GGG | + | chr4_3:34513072-34513091 | None:intergenic | 40.0% |
| ! | ATCCTCTGTATGAGGAGTTT+TGG | + | chr4_3:34513073-34513092 | None:intergenic | 40.0% |
| TCTTCTGAATCCTCTGTATG+AGG | + | chr4_3:34513081-34513100 | None:intergenic | 40.0% | |
| TCATACAGAGGATTCAGAAG+AGG | - | chr4_3:34513080-34513099 | Msa0638890:CDS | 40.0% | |
| !! | GTCTGAAACTTGGAGAGTTT+TGG | + | chr4_3:34513115-34513134 | None:intergenic | 40.0% |
| ! | CATTCTGCTTGTCTGAAACT+TGG | + | chr4_3:34513125-34513144 | None:intergenic | 40.0% |
| CTGATGGGAAGGTTCTTATA+CGG | - | chr4_3:34513145-34513164 | Msa0638890:CDS | 40.0% | |
| ATAACTTACCCTAGACCACA+GGG | + | chr4_3:34513171-34513190 | None:intergenic | 40.0% | |
| TATAACTTACCCTAGACCAC+AGG | + | chr4_3:34513172-34513191 | None:intergenic | 40.0% | |
| ATATTCCCTTACATCCTCTG+GGG | + | chr4_3:34513403-34513422 | None:intergenic | 40.0% | |
| CAATATTCCCTTACATCCTC+TGG | + | chr4_3:34513405-34513424 | None:intergenic | 40.0% | |
| CAGAGGATGTAAGGGAATAT+TGG | - | chr4_3:34513403-34513422 | Msa0638890:CDS | 40.0% | |
| AGGATGTAAGGGAATATTGG+TGG | - | chr4_3:34513406-34513425 | Msa0638890:CDS | 40.0% | |
| TTGATATACCCATGATCACG+AGG | + | chr4_3:34513533-34513552 | None:intergenic | 40.0% | |
| CAGATATGCTCTCAAAAGTG+AGG | - | chr4_3:34513588-34513607 | Msa0638890:CDS | 40.0% | |
| CTCTCAAAAGTGAGGAAGAA+GGG | - | chr4_3:34513596-34513615 | Msa0638890:CDS | 40.0% | |
| TCTCAAAAGTGAGGAAGAAG+GGG | - | chr4_3:34513597-34513616 | Msa0638890:CDS | 40.0% | |
| ACCTCATTGGATATGTGAAG+AGG | - | chr4_3:34513625-34513644 | Msa0638890:CDS | 40.0% | |
| ATTGGATATGTGAAGAGGCT+TGG | - | chr4_3:34513630-34513649 | Msa0638890:CDS | 40.0% | |
| ATATGTGAAGAGGCTTGGAA+GGG | - | chr4_3:34513635-34513654 | Msa0638890:CDS | 40.0% | |
| GCCTTTACACGAATTACGAT+TGG | + | chr4_3:34513717-34513736 | None:intergenic | 40.0% | |
| TTAATGCAGGCTCAAGAACT+TGG | - | chr4_3:34513869-34513888 | Msa0638890:CDS | 40.0% | |
| TAATGCAGGCTCAAGAACTT+GGG | - | chr4_3:34513870-34513889 | Msa0638890:CDS | 40.0% | |
| ACAATATCACGATCGTCTGA+AGG | - | chr4_3:34514069-34514088 | Msa0638890:CDS | 40.0% | |
| TGATCATGCTATGCATCTAG+AGG | - | chr4_3:34514291-34514310 | Msa0638890:CDS | 40.0% | |
| CTAAGAACTCGTCTAGTGAA+TGG | + | chr4_3:34514597-34514616 | None:intergenic | 40.0% | |
| AAGCATCATCAAGCTGAAAG+GGG | - | chr4_3:34514778-34514797 | Msa0638890:intron | 40.0% | |
| TGATGAGGATTCACTAGATG+AGG | - | chr4_3:34514816-34514835 | Msa0638890:CDS | 40.0% | |
| AAAGCAGCGTCAAGCTAAAA+GGG | - | chr4_3:34514846-34514865 | Msa0638890:CDS | 40.0% | |
| AGCAACGACAAGCTAAAAAG+CGG | - | chr4_3:34514989-34515008 | Msa0638890:intron | 40.0% | |
| TTGTCTTCGTCATCATAGTG+AGG | + | chr4_3:34515090-34515109 | None:intergenic | 40.0% | |
| TCCCCATCATTATCATAGTG+AGG | + | chr4_3:34515162-34515181 | None:intergenic | 40.0% | |
| TCATCGTCATCATCATAGTG+AGG | + | chr4_3:34515234-34515253 | None:intergenic | 40.0% | |
| !! | GAATCGGTGTCATCATAAAG+AGG | + | chr4_3:34515381-34515400 | None:intergenic | 40.0% |
| TAAGACCTCGTCTAGTGAAT+CGG | + | chr4_3:34515397-34515416 | None:intergenic | 40.0% | |
| GTCATTACCGTAGTTGAGTT+TGG | - | chr4_3:34515433-34515452 | Msa0638890:CDS | 40.0% | |
| AGTACAGTACGTCAACACAA+AGG | + | chr4_3:34515497-34515516 | None:intergenic | 40.0% | |
| GGATCCCAAAACTCCACATA+TGG | - | chr4_3:34512966-34512985 | Msa0638890:three_prime_UTR | 45.0% | |
| TCCCAAAACTCCACATATGG+AGG | - | chr4_3:34512969-34512988 | Msa0638890:three_prime_UTR | 45.0% | |
| ! | CACCTCCATATGTGGAGTTT+TGG | + | chr4_3:34512974-34512993 | None:intergenic | 45.0% |
| GGATCCCAAAGTTCCTCATA+TGG | - | chr4_3:34513005-34513024 | Msa0638890:three_prime_UTR | 45.0% | |
| TCCCAAAGTTCCTCATATGG+AGG | - | chr4_3:34513008-34513027 | Msa0638890:three_prime_UTR | 45.0% | |
| TATGGAGGAATCAGAAGAGG+AGG | - | chr4_3:34513023-34513042 | Msa0638890:three_prime_UTR | 45.0% | |
| TCCCAAAACTCCTCATACAG+AGG | - | chr4_3:34513068-34513087 | Msa0638890:CDS | 45.0% | |
| TACAGAGGATTCAGAAGAGG+AGG | - | chr4_3:34513083-34513102 | Msa0638890:CDS | 45.0% | |
| TCAGACAAGCAGAATGCTGA+TGG | - | chr4_3:34513129-34513148 | Msa0638890:CDS | 45.0% | |
| CAGACAAGCAGAATGCTGAT+GGG | - | chr4_3:34513130-34513149 | Msa0638890:CDS | 45.0% | |
| TGTGTGTGTGTGTGTGTTGA+TGG | - | chr4_3:34513264-34513283 | Msa0638890:CDS | 45.0% | |
| GCTCTCAAAAGTGAGGAAGA+AGG | - | chr4_3:34513595-34513614 | Msa0638890:CDS | 45.0% | |
| GCCTCTTCACATATCCAATG+AGG | + | chr4_3:34513629-34513648 | None:intergenic | 45.0% | |
| GATATGTGAAGAGGCTTGGA+AGG | - | chr4_3:34513634-34513653 | Msa0638890:CDS | 45.0% | |
| GAAGGGTCTTAATGCCCATT+GGG | - | chr4_3:34513652-34513671 | Msa0638890:CDS | 45.0% | |
| TGTTGATGTGGCACTTAGCA+TGG | - | chr4_3:34513769-34513788 | Msa0638890:CDS | 45.0% | |
| GTGGCTAAAAAGAGCTCATC+GGG | + | chr4_3:34513908-34513927 | None:intergenic | 45.0% | |
| GGTGGCTAAAAAGAGCTCAT+CGG | + | chr4_3:34513909-34513928 | None:intergenic | 45.0% | |
| ATATCACGATCGTCTGAAGG+AGG | - | chr4_3:34514072-34514091 | Msa0638890:CDS | 45.0% | |
| GAATTGTGGAAAGAGGTTGC+TGG | - | chr4_3:34514160-34514179 | Msa0638890:CDS | 45.0% | |
| ! | TTTGCTTTAAACCTCCGTCG+TGG | - | chr4_3:34514220-34514239 | Msa0638890:CDS | 45.0% |
| TGATCACACCCACCACTATA+AGG | + | chr4_3:34514277-34514296 | None:intergenic | 45.0% | |
| ! | CTCTTTACGGACTGCATCAA+TGG | + | chr4_3:34514317-34514336 | None:intergenic | 45.0% |
| CATTGATGCAGTCCGTAAAG+AGG | - | chr4_3:34514315-34514334 | Msa0638890:CDS | 45.0% | |
| !! | TTGTGAAAGCACCTGCTGAT+TGG | + | chr4_3:34514483-34514502 | None:intergenic | 45.0% |
| !! | TTGTGAAAGCACCTGCTGAT+TGG | + | chr4_3:34514483-34514502 | None:intergenic | 45.0% |
| GAATGGTCATCATCATAGCG+AGG | + | chr4_3:34514580-34514599 | None:intergenic | 45.0% | |
| !!! | GATGTTTTTGGCGACGGTTT+GGG | + | chr4_3:34514699-34514718 | None:intergenic | 45.0% |
| !!! | TGATGTTTTTGGCGACGGTT+TGG | + | chr4_3:34514700-34514719 | None:intergenic | 45.0% |
| !!! | GAGCTTGATGTTTTTGGCGA+CGG | + | chr4_3:34514705-34514724 | None:intergenic | 45.0% |
| ! | CTATGATGATGAGGATTCGC+TGG | - | chr4_3:34514741-34514760 | Msa0638890:CDS | 45.0% |
| !!! | CTTTTAGCTTGACGCTGCTT+TGG | + | chr4_3:34514847-34514866 | None:intergenic | 45.0% |
| CAAAGCAGCGTCAAGCTAAA+AGG | - | chr4_3:34514845-34514864 | Msa0638890:CDS | 45.0% | |
| AAGCAGCGTCAAGCTAAAAG+GGG | - | chr4_3:34514847-34514866 | Msa0638890:CDS | 45.0% | |
| TCGTCATCATCGTCATAGTG+AGG | + | chr4_3:34514946-34514965 | None:intergenic | 45.0% | |
| ! | GATGATGACGATTTGCCAGA+CGG | - | chr4_3:34514955-34514974 | Msa0638890:CDS | 45.0% |
| ! | ATGATGACGATTTGCCAGAC+GGG | - | chr4_3:34514956-34514975 | Msa0638890:CDS | 45.0% |
| ! | TCCTCACCATGATAATGACG+AGG | - | chr4_3:34515014-34515033 | Msa0638890:intron | 45.0% |
| TCCTCGTCATTATCATGGTG+AGG | + | chr4_3:34515018-34515037 | None:intergenic | 45.0% | |
| GCGAATCCTCGTCATTATCA+TGG | + | chr4_3:34515023-34515042 | None:intergenic | 45.0% | |
| !!! | GGATGTCGCTTTTTAGCTTG+AGG | + | chr4_3:34515141-34515160 | None:intergenic | 45.0% |
| ACGATGACGATTTGCCAGAT+GGG | - | chr4_3:34515247-34515266 | Msa0638890:intron | 45.0% | |
| TGCTTTGGTAAAACCCCATC+TGG | + | chr4_3:34515117-34515136 | None:intergenic | 45.0% | |
| TGATGAGGATTCGCTACATG+AGG | - | chr4_3:34515320-34515339 | Msa0638890:intron | 45.0% | |
| CTCAACTACGGTAATGACGA+CGG | + | chr4_3:34515431-34515450 | None:intergenic | 45.0% | |
| GTTGACGTACTGTACTACCA+TGG | - | chr4_3:34515501-34515520 | Msa0638890:CDS | 45.0% | |
| !! | ATATAATATAAAAAATGTAA+GGG | + | chr4_3:34513995-34514014 | None:intergenic | 5.0% |
| !! | TATATAATATAAAAAATGTA+AGG | + | chr4_3:34513996-34514015 | None:intergenic | 5.0% |
| ! | AACTCCACATATGGAGGTGC+AGG | - | chr4_3:34512975-34512994 | Msa0638890:three_prime_UTR | 50.0% |
| TCTTCCTGCACCTCCATATG+TGG | + | chr4_3:34512982-34513001 | None:intergenic | 50.0% | |
| ! | ACATATGGAGGTGCAGGAAG+AGG | - | chr4_3:34512981-34513000 | Msa0638890:three_prime_UTR | 50.0% |
| AGAGGAGGAGGAATCAGAAG+AGG | - | chr4_3:34513038-34513057 | Msa0638890:three_prime_UTR | 50.0% | |
| AGAGGATTCAGAAGAGGAGG+AGG | - | chr4_3:34513086-34513105 | Msa0638890:CDS | 50.0% | |
| CAAGCAGAATGCTGATGGGA+AGG | - | chr4_3:34513134-34513153 | Msa0638890:CDS | 50.0% | |
| AAGGTTCTTATACGGCCCTG+TGG | - | chr4_3:34513153-34513172 | Msa0638890:CDS | 50.0% | |
| TTATACGGCCCTGTGGTCTA+GGG | - | chr4_3:34513160-34513179 | Msa0638890:CDS | 50.0% | |
| GTCTCACTCCAGCGATAGAA+AGG | + | chr4_3:34513381-34513400 | None:intergenic | 50.0% | |
| TGAGACCCCAGAGGATGTAA+GGG | - | chr4_3:34513395-34513414 | Msa0638890:CDS | 50.0% | |
| CTTGGGATCCTCGTGATCAT+GGG | - | chr4_3:34513522-34513541 | Msa0638890:CDS | 50.0% | |
| GGAAGGGTCTTAATGCCCAT+TGG | - | chr4_3:34513651-34513670 | Msa0638890:CDS | 50.0% | |
| GGTCTTAATGCCCATTGGGA+GGG | - | chr4_3:34513656-34513675 | Msa0638890:CDS | 50.0% | |
| AAAGGCTTCACCCTCCCAAT+GGG | + | chr4_3:34513669-34513688 | None:intergenic | 50.0% | |
| TAAAGGCTTCACCCTCCCAA+TGG | + | chr4_3:34513670-34513689 | None:intergenic | 50.0% | |
| CCACATCAACATGAGCCTTG+CGG | + | chr4_3:34513760-34513779 | None:intergenic | 50.0% | |
| GCCACCCATAAAAGGAAGTC+TGG | - | chr4_3:34513923-34513942 | Msa0638890:CDS | 50.0% | |
| ! | GCCAGACTTCCTTTTATGGG+TGG | + | chr4_3:34513927-34513946 | None:intergenic | 50.0% |
| AATGGTAAGGCCTCCCAGAA+CGG | - | chr4_3:34514106-34514125 | Msa0638890:CDS | 50.0% | |
| TATCTCCTGCATCCCGTTCT+GGG | + | chr4_3:34514122-34514141 | None:intergenic | 50.0% | |
| AACGGGATGCAGGAGATAGA+TGG | - | chr4_3:34514124-34514143 | Msa0638890:CDS | 50.0% | |
| ACGGGATGCAGGAGATAGAT+GGG | - | chr4_3:34514125-34514144 | Msa0638890:CDS | 50.0% | |
| GGGCGACGAAACTTGAATTG+TGG | - | chr4_3:34514146-34514165 | Msa0638890:CDS | 50.0% | |
| TTGTGGAAAGAGGTTGCTGG+TGG | - | chr4_3:34514163-34514182 | Msa0638890:CDS | 50.0% | |
| !! | AAGAGTCGAGGTCGGTGTTA+TGG | - | chr4_3:34514187-34514206 | Msa0638890:CDS | 50.0% |
| TCAGCGAAGTTACACCACGA+CGG | + | chr4_3:34514237-34514256 | None:intergenic | 50.0% | |
| !! | TGGTGTAACTTCGCTGACTC+AGG | - | chr4_3:34514240-34514259 | Msa0638890:CDS | 50.0% |
| GAGTCTCGGGAACCTTATAG+TGG | - | chr4_3:34514262-34514281 | Msa0638890:CDS | 50.0% | |
| TCTCGGGAACCTTATAGTGG+TGG | - | chr4_3:34514265-34514284 | Msa0638890:CDS | 50.0% | |
| CTCGGGAACCTTATAGTGGT+GGG | - | chr4_3:34514266-34514285 | Msa0638890:CDS | 50.0% | |
| AAGTGTGAGTCAAGCTCGCA+GGG | - | chr4_3:34514501-34514520 | Msa0638890:intron | 50.0% | |
| ACATCCTCGCTACGATGATG+AGG | - | chr4_3:34514801-34514820 | Msa0638890:CDS | 50.0% | |
| GAATCCTCATCATCGTAGCG+AGG | + | chr4_3:34514808-34514827 | None:intergenic | 50.0% | |
| ! | TGATGACGATTTGCCAGACG+GGG | - | chr4_3:34514957-34514976 | Msa0638890:CDS | 50.0% |
| TGACGAGGATTCGCTACATG+AGG | - | chr4_3:34515029-34515048 | Msa0638890:intron | 50.0% | |
| TGATGGGGATTCGTTACACG+AGG | - | chr4_3:34515173-34515192 | Msa0638890:CDS | 50.0% | |
| GACGATGACGATTTGCCAGA+TGG | - | chr4_3:34515246-34515265 | Msa0638890:intron | 50.0% | |
| CGATGACGATTTGCCAGATG+GGG | - | chr4_3:34515248-34515267 | Msa0638890:intron | 50.0% | |
| !! | TGACACCGATTCACTAGACG+AGG | - | chr4_3:34515389-34515408 | Msa0638890:CDS | 50.0% |
| ! | TATGGAGGTGCAGGAAGAGG+AGG | - | chr4_3:34512984-34513003 | Msa0638890:three_prime_UTR | 55.0% |
| GGAGGAATCAGAAGAGGAGG+AGG | - | chr4_3:34513026-34513045 | Msa0638890:three_prime_UTR | 55.0% | |
| GGAGGAGGAATCAGAAGAGG+AGG | - | chr4_3:34513041-34513060 | Msa0638890:three_prime_UTR | 55.0% | |
| GGAGGAATCAGAAGAGGAGG+AGG | - | chr4_3:34513026-34513045 | Msa0638890:three_prime_UTR | 55.0% | |
| CTTATACGGCCCTGTGGTCT+AGG | - | chr4_3:34513159-34513178 | Msa0638890:CDS | 55.0% | |
| GCGTGTTTAATCGCAGCAGC+AGG | + | chr4_3:34513336-34513355 | None:intergenic | 55.0% | |
| GCCATCCAGTCACACTTCCA+GGG | - | chr4_3:34513354-34513373 | Msa0638890:CDS | 55.0% | |
| ! | ACCCTGGAAGTGTGACTGGA+TGG | + | chr4_3:34513358-34513377 | None:intergenic | 55.0% |
| ! | AAGGACCCTGGAAGTGTGAC+TGG | + | chr4_3:34513362-34513381 | None:intergenic | 55.0% |
| TCCAGGGTCCTTTCTATCGC+TGG | - | chr4_3:34513370-34513389 | Msa0638890:CDS | 55.0% | |
| TCCAGCGATAGAAAGGACCC+TGG | + | chr4_3:34513374-34513393 | None:intergenic | 55.0% | |
| GTGAGACCCCAGAGGATGTA+AGG | - | chr4_3:34513394-34513413 | Msa0638890:CDS | 55.0% | |
| GCTTGGGATCCTCGTGATCA+TGG | - | chr4_3:34513521-34513540 | Msa0638890:CDS | 55.0% | |
| AGAAGGGGACGAGACCTCAT+TGG | - | chr4_3:34513612-34513631 | Msa0638890:CDS | 55.0% | |
| GGGTCTTAATGCCCATTGGG+AGG | - | chr4_3:34513655-34513674 | Msa0638890:CDS | 55.0% | |
| CCGCAAGGCTCATGTTGATG+TGG | - | chr4_3:34513757-34513776 | Msa0638890:CDS | 55.0% | |
| TGCAGGCTCAAGAACTTGGG+CGG | - | chr4_3:34513873-34513892 | Msa0638890:CDS | 55.0% | |
| TCAAGAACTTGGGCGGTCTG+TGG | - | chr4_3:34513880-34513899 | Msa0638890:CDS | 55.0% | |
| ATGGTAAGGCCTCCCAGAAC+GGG | - | chr4_3:34514107-34514126 | Msa0638890:CDS | 55.0% | |
| CTATCTCCTGCATCCCGTTC+TGG | + | chr4_3:34514123-34514142 | None:intergenic | 55.0% | |
| CGGGATGCAGGAGATAGATG+GGG | - | chr4_3:34514126-34514145 | Msa0638890:CDS | 55.0% | |
| GTTGCTGGTGGAAAGAGTCG+AGG | - | chr4_3:34514175-34514194 | Msa0638890:CDS | 55.0% | |
| CTGGTGGAAAGAGTCGAGGT+CGG | - | chr4_3:34514179-34514198 | Msa0638890:CDS | 55.0% | |
| !! | CTTCGCTGACTCAGGAGTCT+CGG | - | chr4_3:34514248-34514267 | Msa0638890:CDS | 55.0% |
| !! | TTCGCTGACTCAGGAGTCTC+GGG | - | chr4_3:34514249-34514268 | Msa0638890:CDS | 55.0% |
| CAAGTGTGAGTCAAGCTCGC+AGG | - | chr4_3:34514500-34514519 | Msa0638890:intron | 55.0% | |
| AGTGTGAGTCAAGCTCGCAG+GGG | - | chr4_3:34514502-34514521 | Msa0638890:intron | 55.0% | |
| AAGTGCGAGTCAAGCTCGCA+GGG | - | chr4_3:34514549-34514568 | Msa0638890:CDS | 55.0% | |
| CGACGACGACTCTCTAGATG+AGG | - | chr4_3:34514885-34514904 | Msa0638890:CDS | 55.0% | |
| TGCTTTGGTAAGACCCCGTC+TGG | + | chr4_3:34514973-34514992 | None:intergenic | 55.0% | |
| ! | TTGTAGGTGGGCTCCTAGCG+CGG | - | chr4_3:34513308-34513327 | Msa0638890:CDS | 60.0% |
| CGCCATCCAGTCACACTTCC+AGG | - | chr4_3:34513353-34513372 | Msa0638890:CDS | 60.0% | |
| AACATGAGCCTTGCGGCCTG+TGG | + | chr4_3:34513753-34513772 | None:intergenic | 60.0% | |
| GCGAAGTTACACCACGACGG+AGG | + | chr4_3:34514234-34514253 | None:intergenic | 60.0% | |
| GTGCTGCGGCAGCCTCTTTA+CGG | + | chr4_3:34514330-34514349 | None:intergenic | 60.0% | |
| AGCAGCCTCCTGATGTGCTG+CGG | + | chr4_3:34514344-34514363 | None:intergenic | 60.0% | |
| GTTTCGACTCAGCTGCCTCC+TGG | + | chr4_3:34514396-34514415 | None:intergenic | 60.0% | |
| !! | GCTCTAGAGCGCCAATCAGC+AGG | - | chr4_3:34514469-34514488 | Msa0638890:intron | 60.0% |
| CAAGTGCGAGTCAAGCTCGC+AGG | - | chr4_3:34514548-34514567 | Msa0638890:CDS | 60.0% | |
| AGTGCGAGTCAAGCTCGCAG+GGG | - | chr4_3:34514550-34514569 | Msa0638890:CDS | 60.0% | |
| TAATGACGACGGCGACAGGC+TGG | + | chr4_3:34515420-34515439 | None:intergenic | 60.0% | |
| ACGGTAATGACGACGGCGAC+AGG | + | chr4_3:34515424-34515443 | None:intergenic | 60.0% | |
| TCGCTGGAGTGAGACCCCAG+AGG | - | chr4_3:34513386-34513405 | Msa0638890:CDS | 65.0% | |
| AGTCCACACCACAGGCCGCA+AGG | - | chr4_3:34513742-34513761 | Msa0638890:CDS | 65.0% | |
| ! | CTCCTGCATCCCGTTCTGGG+AGG | + | chr4_3:34514119-34514138 | None:intergenic | 65.0% |
| AGAGGCTGCCGCAGCACATC+AGG | - | chr4_3:34514333-34514352 | Msa0638890:CDS | 65.0% | |
| GGCGGAGCAGTCCACACCAC+AGG | - | chr4_3:34513734-34513753 | Msa0638890:CDS | 70.0% | |
| GAGCCTTGCGGCCTGTGGTG+TGG | + | chr4_3:34513748-34513767 | None:intergenic | 70.0% | |
| GGCCTCCCAGAACGGGATGC+AGG | - | chr4_3:34514114-34514133 | Msa0638890:CDS | 70.0% | |
| GGCTGCCGCAGCACATCAGG+AGG | - | chr4_3:34514336-34514355 | Msa0638890:CDS | 70.0% | |
| GGAGGCTGCTGCAGCACGTC+AGG | - | chr4_3:34514354-34514373 | Msa0638890:CDS | 70.0% | |
| GGCTGCTGCAGCACGTCAGG+AGG | - | chr4_3:34514357-34514376 | Msa0638890:CDS | 70.0% | |
| AGCTGCCTCCTGGCGTGCTG+TGG | + | chr4_3:34514386-34514405 | None:intergenic | 70.0% | |
| CGCAGGGGACGCCAATCAGC+AGG | - | chr4_3:34514517-34514536 | Msa0638890:intron | 70.0% | |
| GGAGGCAGCCACAGCACGCC+AGG | - | chr4_3:34514375-34514394 | Msa0638890:CDS | 75.0% | |
| GGCAGCCACAGCACGCCAGG+AGG | - | chr4_3:34514378-34514397 | Msa0638890:CDS | 75.0% | |
| !! | GCAGCAGCAGGCGCCGCGCT+AGG | + | chr4_3:34513324-34513343 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34512948 | 34515569 | 34512948 | ID=Msa0638890;Name=Msa0638890 |
| chr4_3 | mRNA | 34512948 | 34515569 | 34512948 | ID=Msa0638890-mRNA-1;Parent=Msa0638890;Name=Msa0638890-mRNA-1;_AED=0.12;_eAED=0.16;_QI=7|0.8|0.5|1|0.8|0.66|6|120|700 |
| chr4_3 | exon | 34512948 | 34514450 | 34512948 | ID=Msa0638890-mRNA-1:exon:8002;Parent=Msa0638890-mRNA-1 |
| chr4_3 | exon | 34514538 | 34514639 | 34514538 | ID=Msa0638890-mRNA-1:exon:8001;Parent=Msa0638890-mRNA-1 |
| chr4_3 | exon | 34514727 | 34514782 | 34514727 | ID=Msa0638890-mRNA-1:exon:8000;Parent=Msa0638890-mRNA-1 |
| chr4_3 | exon | 34514798 | 34515005 | 34514798 | ID=Msa0638890-mRNA-1:exon:7999;Parent=Msa0638890-mRNA-1 |
| chr4_3 | exon | 34515077 | 34515203 | 34515077 | ID=Msa0638890-mRNA-1:exon:7998;Parent=Msa0638890-mRNA-1 |
| chr4_3 | exon | 34515336 | 34515569 | 34515336 | ID=Msa0638890-mRNA-1:exon:7997;Parent=Msa0638890-mRNA-1 |
| chr4_3 | five_prime_UTR | 34515563 | 34515569 | 34515563 | ID=Msa0638890-mRNA-1:five_prime_utr;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34515336 | 34515562 | 34515336 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34515077 | 34515203 | 34515077 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34514798 | 34515005 | 34514798 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34514727 | 34514782 | 34514727 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34514538 | 34514639 | 34514538 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | CDS | 34513068 | 34514450 | 34513068 | ID=Msa0638890-mRNA-1:cds;Parent=Msa0638890-mRNA-1 |
| chr4_3 | three_prime_UTR | 34512948 | 34513067 | 34512948 | ID=Msa0638890-mRNA-1:three_prime_utr;Parent=Msa0638890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
