AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068870 MtrunA17_Chr7g0250201 91.892 259 13 3 1 254 103 358 3.00e-105 311
Msa1068870 MtrunA17_Chr4g0066271 46.000 300 87 10 1 285 173 412 8.32e-48 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068870 AT2G44730.1 41.935 279 109 9 1 252 120 372 1.71e-42 149
Msa1068870 AT4G17060.1 56.579 76 32 1 178 253 233 307 7.25e-19 85.1

Find 73 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTGGTGGGTTTCGGATT+AGG 0.234801 7_2:-64255277 Msa1068870:CDS
GAAGCGTACTGAGATGATTT+TGG 0.239738 7_2:-64254970 Msa1068870:CDS
CTTCAAAGCTATGGATTCTA+TGG 0.250239 7_2:-64255540 Msa1068870:CDS
TATGGATATGATTATGATTA+GGG 0.250658 7_2:+64255474 None:intergenic
TCCGGTGGTTCGGGTGGTTT+TGG 0.257177 7_2:-64255305 Msa1068870:CDS
TGAAATGGTGAATGCTATTA+AGG 0.263524 7_2:-64255078 Msa1068870:CDS
AGCGCTGCGGGTGGTGGTTC+TGG 0.286831 7_2:-64255374 Msa1068870:CDS
GCGGGTGGTGGTTCTGGTTC+TGG 0.287442 7_2:-64255368 Msa1068870:CDS
AAAATGAACAATTCAGAATC+TGG 0.292564 7_2:-64255206 Msa1068870:CDS
CTATGGATATGATTATGATT+AGG 0.304409 7_2:+64255473 None:intergenic
GTGTTTCACGGTGGTTAATA+AGG 0.308149 7_2:+64255444 None:intergenic
CTATACCGGAATGGAGTTTC+CGG 0.308151 7_2:-64255323 Msa1068870:CDS
CACGGTGGTTAATAAGGTTA+TGG 0.312262 7_2:+64255450 None:intergenic
AATGGAGTTTCCGGTGGTTC+GGG 0.316820 7_2:-64255314 Msa1068870:CDS
GAATGGAGTTTCCGGTGGTT+CGG 0.324771 7_2:-64255315 Msa1068870:CDS
GTGGTTCCGGTGGTGGGTTT+CGG 0.326675 7_2:-64255283 Msa1068870:CDS
AGAGAGAGGTTGAGAGAGAA+AGG 0.363741 7_2:-64255118 Msa1068870:CDS
TCTCAGATCGATAACGTTTA+CGG 0.384665 7_2:+64255621 None:intergenic
GCATTCACCATTTCACCAAT+TGG 0.387583 7_2:+64255086 None:intergenic
GAGAGATGGGTTTGTGAGAA+TGG 0.405772 7_2:-64255051 Msa1068870:CDS
GTATAGCTTATCAAGACTTC+TGG 0.422110 7_2:+64255340 None:intergenic
ATCTCGTTCTTCTTCTTCGT+GGG 0.425078 7_2:-64255567 Msa1068870:CDS
GTGGGTTCTCTTCAAAGCTA+TGG 0.427834 7_2:-64255549 Msa1068870:CDS
ACCAAAACCACCCGAACCAC+CGG 0.441911 7_2:+64255304 None:intergenic
CTTAGAAGCGCTGCGGGTGG+TGG 0.446289 7_2:-64255380 Msa1068870:CDS
GATCTCGTTCTTCTTCTTCG+TGG 0.446498 7_2:-64255568 Msa1068870:CDS
TTGTGTTGGGGAAGAGAGAG+AGG 0.447145 7_2:-64255142 Msa1068870:CDS
CGTCGTTATTTAGTGTTTCA+CGG 0.450882 7_2:+64255432 None:intergenic
AAGAGATCCAATTGGTGAAA+TGG 0.455113 7_2:-64255093 Msa1068870:CDS
TGGTGGAACAAGGCTTGTTA+AGG 0.460822 7_2:-64255171 Msa1068870:CDS
GAAGAACGAGATCTCGGAAC+AGG 0.461981 7_2:+64255578 None:intergenic
GAAGAGAGAGAGGGAGAGAG+AGG 0.473857 7_2:-64255132 Msa1068870:CDS
GGTTAATAAGGTTATGGCTA+TGG 0.487606 7_2:+64255456 None:intergenic
TGATGATGATGATCTTTATG+AGG 0.488793 7_2:-64255405 Msa1068870:CDS
GTTAAGGAGAGAGTTGTGTT+GGG 0.490506 7_2:-64255155 Msa1068870:CDS
TGTTAAGGAGAGAGTTGTGT+TGG 0.492890 7_2:-64255156 Msa1068870:CDS
TGAAACTATGCGTATGGAGA+TGG 0.494180 7_2:-64254997 Msa1068870:CDS
AAATGAACAATTCAGAATCT+GGG 0.505187 7_2:-64255205 Msa1068870:CDS
TCTGGTTTATGCGGTGGAGA+AGG 0.505466 7_2:+64255500 None:intergenic
ACAATTCAGAATCTGGGTCT+AGG 0.507620 7_2:-64255199 Msa1068870:CDS
GAATCTGGGTCTAGGATCAA+TGG 0.522025 7_2:-64255191 Msa1068870:CDS
GAGAGAGGTTGAGAGAGAAA+GGG 0.525048 7_2:-64255117 Msa1068870:CDS
AACCACCGGAAACTCCATTC+CGG 0.526038 7_2:+64255318 None:intergenic
GAGGAACTTAGAAGCGCTGC+GGG 0.530673 7_2:-64255386 Msa1068870:CDS
GAGAATGGAGCAGATGAAGA+TGG 0.534155 7_2:-64255036 Msa1068870:CDS
GAAAGGGAAAGAGATCCAAT+TGG 0.539477 7_2:-64255101 Msa1068870:CDS
AGAGATTGAAACTATGCGTA+TGG 0.540829 7_2:-64255003 Msa1068870:CDS
GAAGTCTTGATAAGCTATAC+CGG 0.544701 7_2:-64255337 Msa1068870:CDS
GTTTCGGATTAGGATTCCAA+CGG 0.549612 7_2:-64255267 Msa1068870:CDS
GCTATGGATTCTATGGAGAA+AGG 0.554265 7_2:-64255533 Msa1068870:CDS
TGGATTTATCTACGATTCTG+AGG 0.555611 7_2:+64254785 None:intergenic
TTAAGGAGAGAGTTGTGTTG+GGG 0.559890 7_2:-64255154 Msa1068870:CDS
GGAGTTTCCGGTGGTTCGGG+TGG 0.560032 7_2:-64255311 Msa1068870:CDS
TTTCGGATTAGGATTCCAAC+GGG 0.561959 7_2:-64255266 Msa1068870:CDS
GAAGAAGAAGAACGAGATCT+CGG 0.565455 7_2:+64255572 None:intergenic
TGCGGTGGAGAAGGAGGAGA+AGG 0.574396 7_2:+64255509 None:intergenic
GGTGTAAGCGTGGCGCAACC+CGG 0.584893 7_2:-64255245 Msa1068870:CDS
CTTGATAAGCTATACCGGAA+TGG 0.585220 7_2:-64255332 Msa1068870:CDS
CTAGGATCAATGGTGGAACA+AGG 0.587512 7_2:-64255181 Msa1068870:CDS
GGTTTATGCGGTGGAGAAGG+AGG 0.594549 7_2:+64255503 None:intergenic
TGTGTTGGGGAAGAGAGAGA+GGG 0.597007 7_2:-64255141 Msa1068870:CDS
GGATTTATCTACGATTCTGA+GGG 0.599119 7_2:+64254786 None:intergenic
TTTCGGAGAAGAACAAGAAG+AGG 0.600983 7_2:-64254908 Msa1068870:CDS
TACCGGAATGGAGTTTCCGG+TGG 0.607715 7_2:-64255320 Msa1068870:CDS
CAAGAAGAGGAATCTACGCA+AGG 0.608538 7_2:-64254895 Msa1068870:CDS
CCTAATCCGAAACCCACCAC+CGG 0.609435 7_2:+64255277 None:intergenic
GGAGCAGATGAAGATGGAGA+TGG 0.621074 7_2:-64255030 Msa1068870:CDS
GATTCCAACGGGTGTAAGCG+TGG 0.625455 7_2:-64255255 Msa1068870:CDS
AAGAAGAGGAATCTACGCAA+GGG 0.633744 7_2:-64254894 Msa1068870:CDS
GAACTTAGAAGCGCTGCGGG+TGG 0.634991 7_2:-64255383 Msa1068870:CDS
TGAGGAACTTAGAAGCGCTG+CGG 0.656102 7_2:-64255387 Msa1068870:CDS
TCTGGGTCTAGGATCAATGG+TGG 0.665360 7_2:-64255188 Msa1068870:CDS
CGTTATTTAGTGTTTCACGG+TGG 0.748281 7_2:+64255435 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGGATATGATTATGATTA+GGG + chr7_2:64254955-64254974 None:intergenic 20.0%
!! TATGGATATGATTATGATTA+GGG + chr7_2:64254955-64254974 None:intergenic 20.0%
! CTATGGATATGATTATGATT+AGG + chr7_2:64254956-64254975 None:intergenic 25.0%
!!! TTTTGGATAGAATTTTGATC+CGG + chr7_2:64255203-64255222 None:intergenic 25.0%
!! GATTCTGAATTGTTCATTTT+TGG + chr7_2:64255220-64255239 None:intergenic 25.0%
! AAAATGAACAATTCAGAATC+TGG - chr7_2:64255220-64255239 Msa1068870:CDS 25.0%
! AAATGAACAATTCAGAATCT+GGG - chr7_2:64255221-64255240 Msa1068870:CDS 25.0%
! CTATGGATATGATTATGATT+AGG + chr7_2:64254956-64254975 None:intergenic 25.0%
!!! TTTTGGATAGAATTTTGATC+CGG + chr7_2:64255203-64255222 None:intergenic 25.0%
!! GATTCTGAATTGTTCATTTT+TGG + chr7_2:64255220-64255239 None:intergenic 25.0%
! AAAATGAACAATTCAGAATC+TGG - chr7_2:64255220-64255239 Msa1068870:CDS 25.0%
! AAATGAACAATTCAGAATCT+GGG - chr7_2:64255221-64255240 Msa1068870:CDS 25.0%
! TGATTATGATTAGGGTTTTC+TGG + chr7_2:64254947-64254966 None:intergenic 30.0%
! TGATGATGATGATCTTTATG+AGG - chr7_2:64255021-64255040 Msa1068870:CDS 30.0%
!! TTTGGATAGAATTTTGATCC+GGG + chr7_2:64255202-64255221 None:intergenic 30.0%
TGAAATGGTGAATGCTATTA+AGG - chr7_2:64255348-64255367 Msa1068870:CDS 30.0%
!!! CTATTAAGGTTTTGAGAGAT+GGG - chr7_2:64255362-64255381 Msa1068870:CDS 30.0%
! TGATTATGATTAGGGTTTTC+TGG + chr7_2:64254947-64254966 None:intergenic 30.0%
! TGATGATGATGATCTTTATG+AGG - chr7_2:64255021-64255040 Msa1068870:CDS 30.0%
!! TTTGGATAGAATTTTGATCC+GGG + chr7_2:64255202-64255221 None:intergenic 30.0%
TGAAATGGTGAATGCTATTA+AGG - chr7_2:64255348-64255367 Msa1068870:CDS 30.0%
!!! CTATTAAGGTTTTGAGAGAT+GGG - chr7_2:64255362-64255381 Msa1068870:CDS 30.0%
TCTCAGATCGATAACGTTTA+CGG + chr7_2:64254808-64254827 None:intergenic 35.0%
CTTCAAAGCTATGGATTCTA+TGG - chr7_2:64254886-64254905 Msa1068870:CDS 35.0%
!!! TTAGGGTTTTCTGGTTTATG+CGG + chr7_2:64254938-64254957 None:intergenic 35.0%
GGTTAATAAGGTTATGGCTA+TGG + chr7_2:64254973-64254992 None:intergenic 35.0%
CGTCGTTATTTAGTGTTTCA+CGG + chr7_2:64254997-64255016 None:intergenic 35.0%
GTATAGCTTATCAAGACTTC+TGG + chr7_2:64255089-64255108 None:intergenic 35.0%
GAAGTCTTGATAAGCTATAC+CGG - chr7_2:64255089-64255108 Msa1068870:CDS 35.0%
AAGAGATCCAATTGGTGAAA+TGG - chr7_2:64255333-64255352 Msa1068870:CDS 35.0%
!!! GCTATTAAGGTTTTGAGAGA+TGG - chr7_2:64255361-64255380 Msa1068870:CDS 35.0%
AGAGATTGAAACTATGCGTA+TGG - chr7_2:64255423-64255442 Msa1068870:CDS 35.0%
TCTCAGATCGATAACGTTTA+CGG + chr7_2:64254808-64254827 None:intergenic 35.0%
CTTCAAAGCTATGGATTCTA+TGG - chr7_2:64254886-64254905 Msa1068870:CDS 35.0%
!!! TTAGGGTTTTCTGGTTTATG+CGG + chr7_2:64254938-64254957 None:intergenic 35.0%
GGTTAATAAGGTTATGGCTA+TGG + chr7_2:64254973-64254992 None:intergenic 35.0%
CGTCGTTATTTAGTGTTTCA+CGG + chr7_2:64254997-64255016 None:intergenic 35.0%
GTATAGCTTATCAAGACTTC+TGG + chr7_2:64255089-64255108 None:intergenic 35.0%
GAAGTCTTGATAAGCTATAC+CGG - chr7_2:64255089-64255108 Msa1068870:CDS 35.0%
AAGAGATCCAATTGGTGAAA+TGG - chr7_2:64255333-64255352 Msa1068870:CDS 35.0%
!!! GCTATTAAGGTTTTGAGAGA+TGG - chr7_2:64255361-64255380 Msa1068870:CDS 35.0%
AGAGATTGAAACTATGCGTA+TGG - chr7_2:64255423-64255442 Msa1068870:CDS 35.0%
GAAGAAGAAGAACGAGATCT+CGG + chr7_2:64254857-64254876 None:intergenic 40.0%
ATCTCGTTCTTCTTCTTCGT+GGG - chr7_2:64254859-64254878 Msa1068870:CDS 40.0%
GCTATGGATTCTATGGAGAA+AGG - chr7_2:64254893-64254912 Msa1068870:CDS 40.0%
CACGGTGGTTAATAAGGTTA+TGG + chr7_2:64254979-64254998 None:intergenic 40.0%
GTGTTTCACGGTGGTTAATA+AGG + chr7_2:64254985-64255004 None:intergenic 40.0%
CGTTATTTAGTGTTTCACGG+TGG + chr7_2:64254994-64255013 None:intergenic 40.0%
CTTGATAAGCTATACCGGAA+TGG - chr7_2:64255094-64255113 Msa1068870:CDS 40.0%
! GTTTCGGATTAGGATTCCAA+CGG - chr7_2:64255159-64255178 Msa1068870:CDS 40.0%
! TTTCGGATTAGGATTCCAAC+GGG - chr7_2:64255160-64255179 Msa1068870:CDS 40.0%
ACAATTCAGAATCTGGGTCT+AGG - chr7_2:64255227-64255246 Msa1068870:CDS 40.0%
TGTTAAGGAGAGAGTTGTGT+TGG - chr7_2:64255270-64255289 Msa1068870:CDS 40.0%
GTTAAGGAGAGAGTTGTGTT+GGG - chr7_2:64255271-64255290 Msa1068870:CDS 40.0%
TTAAGGAGAGAGTTGTGTTG+GGG - chr7_2:64255272-64255291 Msa1068870:CDS 40.0%
GAAAGGGAAAGAGATCCAAT+TGG - chr7_2:64255325-64255344 Msa1068870:CDS 40.0%
GCATTCACCATTTCACCAAT+TGG + chr7_2:64255343-64255362 None:intergenic 40.0%
TGAAACTATGCGTATGGAGA+TGG - chr7_2:64255429-64255448 Msa1068870:CDS 40.0%
! GAAGCGTACTGAGATGATTT+TGG - chr7_2:64255456-64255475 Msa1068870:CDS 40.0%
! AGCTTTTGCGAAAGCTGTTT+CGG - chr7_2:64255501-64255520 Msa1068870:CDS 40.0%
TTTCGGAGAAGAACAAGAAG+AGG - chr7_2:64255518-64255537 Msa1068870:CDS 40.0%
AAGAAGAGGAATCTACGCAA+GGG - chr7_2:64255532-64255551 Msa1068870:CDS 40.0%
GAAGAAGAAGAACGAGATCT+CGG + chr7_2:64254857-64254876 None:intergenic 40.0%
ATCTCGTTCTTCTTCTTCGT+GGG - chr7_2:64254859-64254878 Msa1068870:CDS 40.0%
GCTATGGATTCTATGGAGAA+AGG - chr7_2:64254893-64254912 Msa1068870:CDS 40.0%
CACGGTGGTTAATAAGGTTA+TGG + chr7_2:64254979-64254998 None:intergenic 40.0%
GTGTTTCACGGTGGTTAATA+AGG + chr7_2:64254985-64255004 None:intergenic 40.0%
CGTTATTTAGTGTTTCACGG+TGG + chr7_2:64254994-64255013 None:intergenic 40.0%
CTTGATAAGCTATACCGGAA+TGG - chr7_2:64255094-64255113 Msa1068870:CDS 40.0%
! GTTTCGGATTAGGATTCCAA+CGG - chr7_2:64255159-64255178 Msa1068870:CDS 40.0%
! TTTCGGATTAGGATTCCAAC+GGG - chr7_2:64255160-64255179 Msa1068870:CDS 40.0%
ACAATTCAGAATCTGGGTCT+AGG - chr7_2:64255227-64255246 Msa1068870:CDS 40.0%
TGTTAAGGAGAGAGTTGTGT+TGG - chr7_2:64255270-64255289 Msa1068870:CDS 40.0%
GTTAAGGAGAGAGTTGTGTT+GGG - chr7_2:64255271-64255290 Msa1068870:CDS 40.0%
TTAAGGAGAGAGTTGTGTTG+GGG - chr7_2:64255272-64255291 Msa1068870:CDS 40.0%
GAAAGGGAAAGAGATCCAAT+TGG - chr7_2:64255325-64255344 Msa1068870:CDS 40.0%
GCATTCACCATTTCACCAAT+TGG + chr7_2:64255343-64255362 None:intergenic 40.0%
TGAAACTATGCGTATGGAGA+TGG - chr7_2:64255429-64255448 Msa1068870:CDS 40.0%
! GAAGCGTACTGAGATGATTT+TGG - chr7_2:64255456-64255475 Msa1068870:CDS 40.0%
! AGCTTTTGCGAAAGCTGTTT+CGG - chr7_2:64255501-64255520 Msa1068870:CDS 40.0%
TTTCGGAGAAGAACAAGAAG+AGG - chr7_2:64255518-64255537 Msa1068870:CDS 40.0%
AAGAAGAGGAATCTACGCAA+GGG - chr7_2:64255532-64255551 Msa1068870:CDS 40.0%
GATCTCGTTCTTCTTCTTCG+TGG - chr7_2:64254858-64254877 Msa1068870:CDS 45.0%
GTGGGTTCTCTTCAAAGCTA+TGG - chr7_2:64254877-64254896 Msa1068870:CDS 45.0%
CTATACCGGAATGGAGTTTC+CGG - chr7_2:64255103-64255122 Msa1068870:CDS 45.0%
! GAATCTGGGTCTAGGATCAA+TGG - chr7_2:64255235-64255254 Msa1068870:CDS 45.0%
! CTAGGATCAATGGTGGAACA+AGG - chr7_2:64255245-64255264 Msa1068870:CDS 45.0%
!! TGGTGGAACAAGGCTTGTTA+AGG - chr7_2:64255255-64255274 Msa1068870:CDS 45.0%
AGAGAGAGGTTGAGAGAGAA+AGG - chr7_2:64255308-64255327 Msa1068870:CDS 45.0%
GAGAGAGGTTGAGAGAGAAA+GGG - chr7_2:64255309-64255328 Msa1068870:CDS 45.0%
! GAGAGATGGGTTTGTGAGAA+TGG - chr7_2:64255375-64255394 Msa1068870:CDS 45.0%
GAGAATGGAGCAGATGAAGA+TGG - chr7_2:64255390-64255409 Msa1068870:CDS 45.0%
!!! TGATTTTGGAGTCTCAGCAG+AGG - chr7_2:64255470-64255489 Msa1068870:CDS 45.0%
CAAGAAGAGGAATCTACGCA+AGG - chr7_2:64255531-64255550 Msa1068870:CDS 45.0%
GATCTCGTTCTTCTTCTTCG+TGG - chr7_2:64254858-64254877 Msa1068870:CDS 45.0%
GTGGGTTCTCTTCAAAGCTA+TGG - chr7_2:64254877-64254896 Msa1068870:CDS 45.0%
CTATACCGGAATGGAGTTTC+CGG - chr7_2:64255103-64255122 Msa1068870:CDS 45.0%
! GAATCTGGGTCTAGGATCAA+TGG - chr7_2:64255235-64255254 Msa1068870:CDS 45.0%
! CTAGGATCAATGGTGGAACA+AGG - chr7_2:64255245-64255264 Msa1068870:CDS 45.0%
!! TGGTGGAACAAGGCTTGTTA+AGG - chr7_2:64255255-64255274 Msa1068870:CDS 45.0%
AGAGAGAGGTTGAGAGAGAA+AGG - chr7_2:64255308-64255327 Msa1068870:CDS 45.0%
GAGAGAGGTTGAGAGAGAAA+GGG - chr7_2:64255309-64255328 Msa1068870:CDS 45.0%
! GAGAGATGGGTTTGTGAGAA+TGG - chr7_2:64255375-64255394 Msa1068870:CDS 45.0%
GAGAATGGAGCAGATGAAGA+TGG - chr7_2:64255390-64255409 Msa1068870:CDS 45.0%
!!! TGATTTTGGAGTCTCAGCAG+AGG - chr7_2:64255470-64255489 Msa1068870:CDS 45.0%
CAAGAAGAGGAATCTACGCA+AGG - chr7_2:64255531-64255550 Msa1068870:CDS 45.0%
GAAGAACGAGATCTCGGAAC+AGG + chr7_2:64254851-64254870 None:intergenic 50.0%
! TCTGGTTTATGCGGTGGAGA+AGG + chr7_2:64254929-64254948 None:intergenic 50.0%
!!! GGGTTTTCTGGTTTATGCGG+TGG + chr7_2:64254935-64254954 None:intergenic 50.0%
!! TGAGGAACTTAGAAGCGCTG+CGG - chr7_2:64255039-64255058 Msa1068870:CDS 50.0%
AACCACCGGAAACTCCATTC+CGG + chr7_2:64255111-64255130 None:intergenic 50.0%
GAATGGAGTTTCCGGTGGTT+CGG - chr7_2:64255111-64255130 Msa1068870:CDS 50.0%
AATGGAGTTTCCGGTGGTTC+GGG - chr7_2:64255112-64255131 Msa1068870:CDS 50.0%
! TCTGGGTCTAGGATCAATGG+TGG - chr7_2:64255238-64255257 Msa1068870:CDS 50.0%
TTGTGTTGGGGAAGAGAGAG+AGG - chr7_2:64255284-64255303 Msa1068870:CDS 50.0%
TGTGTTGGGGAAGAGAGAGA+GGG - chr7_2:64255285-64255304 Msa1068870:CDS 50.0%
GGAGCAGATGAAGATGGAGA+TGG - chr7_2:64255396-64255415 Msa1068870:CDS 50.0%
GAAGAACGAGATCTCGGAAC+AGG + chr7_2:64254851-64254870 None:intergenic 50.0%
! TCTGGTTTATGCGGTGGAGA+AGG + chr7_2:64254929-64254948 None:intergenic 50.0%
!!! GGGTTTTCTGGTTTATGCGG+TGG + chr7_2:64254935-64254954 None:intergenic 50.0%
!! TGAGGAACTTAGAAGCGCTG+CGG - chr7_2:64255039-64255058 Msa1068870:CDS 50.0%
AACCACCGGAAACTCCATTC+CGG + chr7_2:64255111-64255130 None:intergenic 50.0%
GAATGGAGTTTCCGGTGGTT+CGG - chr7_2:64255111-64255130 Msa1068870:CDS 50.0%
AATGGAGTTTCCGGTGGTTC+GGG - chr7_2:64255112-64255131 Msa1068870:CDS 50.0%
! TCTGGGTCTAGGATCAATGG+TGG - chr7_2:64255238-64255257 Msa1068870:CDS 50.0%
TTGTGTTGGGGAAGAGAGAG+AGG - chr7_2:64255284-64255303 Msa1068870:CDS 50.0%
TGTGTTGGGGAAGAGAGAGA+GGG - chr7_2:64255285-64255304 Msa1068870:CDS 50.0%
GGAGCAGATGAAGATGGAGA+TGG - chr7_2:64255396-64255415 Msa1068870:CDS 50.0%
GGTTTATGCGGTGGAGAAGG+AGG + chr7_2:64254926-64254945 None:intergenic 55.0%
!! GAGGAACTTAGAAGCGCTGC+GGG - chr7_2:64255040-64255059 Msa1068870:CDS 55.0%
TACCGGAATGGAGTTTCCGG+TGG - chr7_2:64255106-64255125 Msa1068870:CDS 55.0%
ACCAAAACCACCCGAACCAC+CGG + chr7_2:64255125-64255144 None:intergenic 55.0%
!!! TCGGGTGGTTTTGGTGGTTC+CGG - chr7_2:64255130-64255149 Msa1068870:CDS 55.0%
!! GTTTTGGTGGTTCCGGTGGT+GGG - chr7_2:64255137-64255156 Msa1068870:CDS 55.0%
CCTAATCCGAAACCCACCAC+CGG + chr7_2:64255152-64255171 None:intergenic 55.0%
GATTCCAACGGGTGTAAGCG+TGG - chr7_2:64255171-64255190 Msa1068870:CDS 55.0%
GAAGAGAGAGAGGGAGAGAG+AGG - chr7_2:64255294-64255313 Msa1068870:CDS 55.0%
GGTTTATGCGGTGGAGAAGG+AGG + chr7_2:64254926-64254945 None:intergenic 55.0%
!! GAGGAACTTAGAAGCGCTGC+GGG - chr7_2:64255040-64255059 Msa1068870:CDS 55.0%
TACCGGAATGGAGTTTCCGG+TGG - chr7_2:64255106-64255125 Msa1068870:CDS 55.0%
ACCAAAACCACCCGAACCAC+CGG + chr7_2:64255125-64255144 None:intergenic 55.0%
!!! TCGGGTGGTTTTGGTGGTTC+CGG - chr7_2:64255130-64255149 Msa1068870:CDS 55.0%
!! GTTTTGGTGGTTCCGGTGGT+GGG - chr7_2:64255137-64255156 Msa1068870:CDS 55.0%
CCTAATCCGAAACCCACCAC+CGG + chr7_2:64255152-64255171 None:intergenic 55.0%
GATTCCAACGGGTGTAAGCG+TGG - chr7_2:64255171-64255190 Msa1068870:CDS 55.0%
GAAGAGAGAGAGGGAGAGAG+AGG - chr7_2:64255294-64255313 Msa1068870:CDS 55.0%
TGCGGTGGAGAAGGAGGAGA+AGG + chr7_2:64254920-64254939 None:intergenic 60.0%
!! GAACTTAGAAGCGCTGCGGG+TGG - chr7_2:64255043-64255062 Msa1068870:CDS 60.0%
!! TCCGGTGGTTCGGGTGGTTT+TGG - chr7_2:64255121-64255140 Msa1068870:CDS 60.0%
!!! GGTGGTTCGGGTGGTTTTGG+TGG - chr7_2:64255124-64255143 Msa1068870:CDS 60.0%
!!! GGTGGTTTTGGTGGTTCCGG+TGG - chr7_2:64255133-64255152 Msa1068870:CDS 60.0%
!! GGTTTTGGTGGTTCCGGTGG+TGG - chr7_2:64255136-64255155 Msa1068870:CDS 60.0%
!! GTGGTTCCGGTGGTGGGTTT+CGG - chr7_2:64255143-64255162 Msa1068870:CDS 60.0%
!! CCGGTGGTGGGTTTCGGATT+AGG - chr7_2:64255149-64255168 Msa1068870:CDS 60.0%
TGCGGTGGAGAAGGAGGAGA+AGG + chr7_2:64254920-64254939 None:intergenic 60.0%
!! GAACTTAGAAGCGCTGCGGG+TGG - chr7_2:64255043-64255062 Msa1068870:CDS 60.0%
!! TCCGGTGGTTCGGGTGGTTT+TGG - chr7_2:64255121-64255140 Msa1068870:CDS 60.0%
!!! GGTGGTTCGGGTGGTTTTGG+TGG - chr7_2:64255124-64255143 Msa1068870:CDS 60.0%
!!! GGTGGTTTTGGTGGTTCCGG+TGG - chr7_2:64255133-64255152 Msa1068870:CDS 60.0%
!! GGTTTTGGTGGTTCCGGTGG+TGG - chr7_2:64255136-64255155 Msa1068870:CDS 60.0%
!! GTGGTTCCGGTGGTGGGTTT+CGG - chr7_2:64255143-64255162 Msa1068870:CDS 60.0%
!! CCGGTGGTGGGTTTCGGATT+AGG - chr7_2:64255149-64255168 Msa1068870:CDS 60.0%
!! CTTAGAAGCGCTGCGGGTGG+TGG - chr7_2:64255046-64255065 Msa1068870:CDS 65.0%
!! GCGGGTGGTGGTTCTGGTTC+TGG - chr7_2:64255058-64255077 Msa1068870:CDS 65.0%
! GGAGTTTCCGGTGGTTCGGG+TGG - chr7_2:64255115-64255134 Msa1068870:CDS 65.0%
TGCGCCACGCTTACACCCGT+TGG + chr7_2:64255178-64255197 None:intergenic 65.0%
GGTGTAAGCGTGGCGCAACC+CGG - chr7_2:64255181-64255200 Msa1068870:CDS 65.0%
!! CTTAGAAGCGCTGCGGGTGG+TGG - chr7_2:64255046-64255065 Msa1068870:CDS 65.0%
!! GCGGGTGGTGGTTCTGGTTC+TGG - chr7_2:64255058-64255077 Msa1068870:CDS 65.0%
! GGAGTTTCCGGTGGTTCGGG+TGG - chr7_2:64255115-64255134 Msa1068870:CDS 65.0%
TGCGCCACGCTTACACCCGT+TGG + chr7_2:64255178-64255197 None:intergenic 65.0%
GGTGTAAGCGTGGCGCAACC+CGG - chr7_2:64255181-64255200 Msa1068870:CDS 65.0%
! AGCGCTGCGGGTGGTGGTTC+TGG - chr7_2:64255052-64255071 Msa1068870:CDS 70.0%
! AGCGCTGCGGGTGGTGGTTC+TGG - chr7_2:64255052-64255071 Msa1068870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64254794 64255654 64254794 ID=Msa1068870;Name=Msa1068870
chr7_2 mRNA 64254794 64255654 64254794 ID=Msa1068870-mRNA-1;Parent=Msa1068870;Name=Msa1068870-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|286
chr7_2 exon 64254794 64255654 64254794 ID=Msa1068870-mRNA-1:exon:13358;Parent=Msa1068870-mRNA-1
chr7_2 CDS 64254794 64255654 64254794 ID=Msa1068870-mRNA-1:cds;Parent=Msa1068870-mRNA-1
Gene Sequence

>Msa1068870

ATGGAAAAGCTCCGTAAACGTTATCGATCTGAGATTCAGAAACTTAGATCTCTTCCTGTTCCGAGATCTCGTTCTTCTTCTTCGTGGGTTCTCTTCAAAGCTATGGATTCTATGGAGAAAGGTCCTTCTCCTCCTTCTCCACCGCATAAACCAGAAAACCCTAATCATAATCATATCCATAGCCATAACCTTATTAACCACCGTGAAACACTAAATAACGACGATTATGATGATGATGATCTTTATGAGGAACTTAGAAGCGCTGCGGGTGGTGGTTCTGGTTCTGGTAATACCAGAAGTCTTGATAAGCTATACCGGAATGGAGTTTCCGGTGGTTCGGGTGGTTTTGGTGGTTCCGGTGGTGGGTTTCGGATTAGGATTCCAACGGGTGTAAGCGTGGCGCAACCCGGATCAAAATTCTATCCAAAAATGAACAATTCAGAATCTGGGTCTAGGATCAATGGTGGAACAAGGCTTGTTAAGGAGAGAGTTGTGTTGGGGAAGAGAGAGAGGGAGAGAGAGGTTGAGAGAGAAAGGGAAAGAGATCCAATTGGTGAAATGGTGAATGCTATTAAGGTTTTGAGAGATGGGTTTGTGAGAATGGAGCAGATGAAGATGGAGATGGCTAGAGAGATTGAAACTATGCGTATGGAGATGGAGATGAAGCGTACTGAGATGATTTTGGAGTCTCAGCAGAGGATTGTTGAAGCTTTTGCGAAAGCTGTTTCGGAGAAGAACAAGAAGAGGAATCTACGCAAGGGTAATAGTATCAACAACAACATCAACAACGATGTCAACAACAACGACAACAACAACGACGACAATAACAATAACAACATAGCTTCACCCTCAGAATCGTAG

Protein sequence

>Msa1068870

MEKLRKRYRSEIQKLRSLPVPRSRSSSSWVLFKAMDSMEKGPSPPSPPHKPENPNHNHIHSHNLINHRETLNNDDYDDDDLYEELRSAAGGGSGSGNTRSLDKLYRNGVSGGSGGFGGSGGGFRIRIPTGVSVAQPGSKFYPKMNNSESGSRINGGTRLVKERVVLGKREREREVERERERDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNKKRNLRKGNSINNNINNDVNNNDNNNDDNNNNNIASPSES*