AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481970 MtrunA17_Chr4g0058741 93.377 302 17 1 1 299 1 302 0.0 567
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481970 AT3G48210.1 41.196 301 154 9 10 299 24 312 2.43e-61 197

Find 88 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATGACGGTTACATGATT+TGG 0.288672 3_3:+88389738 None:intergenic
CATGTAACCGTCATGTCATT+AGG 0.291198 3_3:-88389732 Msa0481970:three_prime_UTR
AGGCCATCTCTTGGTATAAC+AGG 0.291680 3_3:-88392428 Msa0481970:CDS
CATCTGTCTTGTTTAATTCA+TGG 0.302544 3_3:+88392069 None:intergenic
TTTGATGGATTGGAAGGATT+TGG 0.310983 3_3:+88394303 None:intergenic
CGAACAGATAAAGCAGAATT+AGG 0.320831 3_3:+88391371 None:intergenic
GCATAGTTTAATTGAGAAAC+TGG 0.323527 3_3:-88394494 Msa0481970:five_prime_UTR
AAAGCAGAATTAGGAGATAA+AGG 0.332141 3_3:+88391380 None:intergenic
TTCTGCTTCGCAGCGGGTTA+AGG 0.342230 3_3:+88394372 None:intergenic
GCTCCCCGAGGTTCTCTTGC+AGG 0.343043 3_3:-88389919 Msa0481970:three_prime_UTR
GTAAAAGAGTACTCCTCATT+TGG 0.343740 3_3:+88392250 None:intergenic
GAAGGAAGTGGAAGATGAAT+TGG 0.348717 3_3:-88394138 Msa0481970:CDS
TCGCCAGTCTCCACGTTTGA+AGG 0.380013 3_3:-88391351 Msa0481970:intron
TATTGACAATGTATTTGAAA+TGG 0.388190 3_3:-88389696 Msa0481970:three_prime_UTR
TCTTGGTATAACAGGGTACT+TGG 0.397967 3_3:-88392420 Msa0481970:CDS
GGCTAAGCGAATGGCTTTGT+TGG 0.400276 3_3:-88393996 Msa0481970:CDS
GAATTGGTTAAAGTACTTGC+AGG 0.417371 3_3:-88394122 Msa0481970:intron
ATGTAACCGTCATGTCATTA+GGG 0.422756 3_3:-88389731 Msa0481970:three_prime_UTR
AGTTCGCAGAAGGAAAAGTT+TGG 0.425349 3_3:-88391405 Msa0481970:CDS
TAAAGACAAATTGAAGGAAG+TGG 0.439442 3_3:-88394150 Msa0481970:CDS
TTGTGACAATGTATTTGAAA+TGG 0.447665 3_3:-88389652 Msa0481970:three_prime_UTR
AGGAGCGGATGAAGATATAA+AGG 0.452608 3_3:+88391517 None:intergenic
GTTCTAACAACAGTTAATCC+TGG 0.455209 3_3:-88391548 Msa0481970:CDS
TGTGATTTCTGCTTCGCAGC+GGG 0.455421 3_3:+88394366 None:intergenic
TTTATATCTTCATCCGCTCC+TGG 0.466324 3_3:-88391515 Msa0481970:CDS
TTCAGAAAAGACGCGTAAAG+AGG 0.467634 3_3:-88394017 Msa0481970:intron
AGCTCGAACGTTGTTGTGGT+GGG 0.474631 3_3:+88394470 None:intergenic
TTAGCAAACACTTGGCAACT+TGG 0.476492 3_3:+88389889 None:intergenic
ATTGCCTGCAAGAGAACCTC+GGG 0.482453 3_3:+88389915 None:intergenic
CGGAACATAGATACGTCGTT+TGG 0.487227 3_3:+88389852 None:intergenic
CGTTGTGAACCTTCCTTCGA+TGG 0.489675 3_3:-88392107 Msa0481970:CDS
TGAGGTTAAAGACAAATTGA+AGG 0.495061 3_3:-88394156 Msa0481970:CDS
CAAACGACGTATCTATGTTC+CGG 0.504424 3_3:-88389851 Msa0481970:three_prime_UTR
ACCAGACTACATTGACATCA+TGG 0.506285 3_3:+88389808 None:intergenic
GCTTCTGCTAAGGCTAGAGT+TGG 0.508997 3_3:-88393965 Msa0481970:CDS
CTTCGATGGTATTGAAGAGC+TGG 0.509662 3_3:-88392093 Msa0481970:CDS
ATACCTTCAAACGTGGAGAC+TGG 0.510056 3_3:+88391348 None:intergenic
GGATGCTATTGCTTCTGCTA+AGG 0.514115 3_3:-88393975 Msa0481970:CDS
GGATTGGAAGGATTTGGAAA+AGG 0.514441 3_3:+88394309 None:intergenic
CAACAAACCGCGAAAACTCA+AGG 0.515409 3_3:-88394271 Msa0481970:intron
TTAAGTTTGTCAGAGTAATG+AGG 0.518116 3_3:-88392040 Msa0481970:CDS
GAAACTCTGGCAGCATCTGA+AGG 0.522058 3_3:-88392492 Msa0481970:intron
TTTCTATCGCAGCAATCACT+CGG 0.528626 3_3:-88393887 Msa0481970:intron
GAGCATGAAGTGGAACGCTC+TGG 0.532714 3_3:-88391455 Msa0481970:CDS
ATCTGAAGGGAGGTTGAATG+AGG 0.533325 3_3:-88392478 Msa0481970:CDS
GATATAAAGGCAGATTCTCC+AGG 0.534729 3_3:+88391530 None:intergenic
ACCATGATGTCAATGTAGTC+TGG 0.535244 3_3:-88389809 Msa0481970:three_prime_UTR
TGAGGAGGAGAACAGAAAGA+TGG 0.536033 3_3:-88394407 Msa0481970:exon
TAGCAAACACTTGGCAACTT+GGG 0.537532 3_3:+88389890 None:intergenic
AAGCTCGAACGTTGTTGTGG+TGG 0.542276 3_3:+88394469 None:intergenic
GAAGGATTTGGAAAAGGAAG+CGG 0.548779 3_3:+88394315 None:intergenic
TAGAAGTGATTCTACAACCA+TGG 0.551320 3_3:-88391483 Msa0481970:CDS
AAACACAGGAGGCCATCTCT+TGG 0.552693 3_3:-88392437 Msa0481970:CDS
TGCTTCGCAGCGGGTTAAGG+AGG 0.553460 3_3:+88394375 None:intergenic
CTTCTCAGTTCAATTAGATG+AGG 0.570883 3_3:-88394174 Msa0481970:intron
CGGCGAAAGCGTCGACGGTG+TGG 0.579854 3_3:+88394335 None:intergenic
AAACTCTGGCAGCATCTGAA+GGG 0.583847 3_3:-88392491 Msa0481970:intron
GGAAGCGGCGAAAGCGTCGA+CGG 0.585423 3_3:+88394330 None:intergenic
TCACTTCTAACAGATGTGCC+AGG 0.592551 3_3:+88391497 None:intergenic
TCTCAACTCAAGTATTCAAG+AGG 0.594999 3_3:-88393939 Msa0481970:CDS
AAATTTGATGAATCCAAATG+AGG 0.603849 3_3:-88392263 Msa0481970:CDS
CATGGAAAATGAGCATGAAG+TGG 0.605107 3_3:-88391465 Msa0481970:CDS
TACCCTGTTATACCAAGAGA+TGG 0.606063 3_3:+88392425 None:intergenic
CTCTGGCAGCATCTGAAGGG+AGG 0.608901 3_3:-88392488 Msa0481970:intron
GCTCGAACGTTGTTGTGGTG+GGG 0.610501 3_3:+88394471 None:intergenic
AATTGCCTGCAAGAGAACCT+CGG 0.613981 3_3:+88389914 None:intergenic
TGTATCATATGTGACAGACT+AGG 0.617833 3_3:-88389997 Msa0481970:exon
ATCACGCCCTAATGACATGA+CGG 0.619563 3_3:+88389725 None:intergenic
CAGCTCTTCAATACCATCGA+AGG 0.622116 3_3:+88392094 None:intergenic
CATGAATTAAACAAGACAGA+TGG 0.623903 3_3:-88392068 Msa0481970:CDS
GCGTAAAGAGGCTAAGCGAA+TGG 0.626876 3_3:-88394005 Msa0481970:CDS
TTTCAAGAAGCATTGACACA+AGG 0.631864 3_3:-88392011 Msa0481970:intron
TGAATTTGTTAGCAAACACT+TGG 0.635409 3_3:+88389881 None:intergenic
TCTTCAATACCATCGAAGGA+AGG 0.637490 3_3:+88392098 None:intergenic
AACATTGGATACGAGTGAGG+AGG 0.639540 3_3:-88394422 Msa0481970:five_prime_UTR
GGCCATCTCTTGGTATAACA+GGG 0.647513 3_3:-88392427 Msa0481970:CDS
TCTAACAGATGTGCCAGGAG+CGG 0.649007 3_3:+88391502 None:intergenic
TCTGAAGGGAGGTTGAATGA+GGG 0.651760 3_3:-88392477 Msa0481970:CDS
TGAACATACAGATGAAACAC+AGG 0.659863 3_3:-88392451 Msa0481970:CDS
AGCATCAATCAAATGAGCAG+TGG 0.662346 3_3:+88389951 None:intergenic
TTTCGCGGTTTGTTGTGCGG+TGG 0.664534 3_3:+88394279 None:intergenic
GTGTGATTTCTGCTTCGCAG+CGG 0.670448 3_3:+88394365 None:intergenic
GACTAGGAGATAAAATACAA+AGG 0.671041 3_3:-88389981 Msa0481970:three_prime_UTR
GTAATTCATACCTTCAAACG+TGG 0.717846 3_3:+88391341 None:intergenic
GCTACATACTGAGCTCCCCG+AGG 0.725896 3_3:-88389931 Msa0481970:three_prime_UTR
ACATACAGATGAAACACAGG+AGG 0.726406 3_3:-88392448 Msa0481970:CDS
GTATTCAAGAGGTTCGAACG+AGG 0.743006 3_3:-88393928 Msa0481970:CDS
TTGCCTGCAAGAGAACCTCG+GGG 0.789141 3_3:+88389916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTTGTAAATAGTTA+TGG - chr3_3:88394036-88394055 Msa0481970:intron 10.0%
!! AATCAAATAATAAAAAATCA+TGG + chr3_3:88394493-88394512 None:intergenic 10.0%
!!! ACCTTATTTGTTTTAAATAA+TGG - chr3_3:88390043-88390062 Msa0481970:intron 15.0%
!!! TCCATTATTTAAAACAAATA+AGG + chr3_3:88390047-88390066 None:intergenic 15.0%
!!! ATCTTCAAAAAAGATTTTAA+AGG + chr3_3:88390797-88390816 None:intergenic 15.0%
!!! TTCAAATCTTATTTTATAAC+AGG + chr3_3:88390830-88390849 None:intergenic 15.0%
!! TGTTATAAAATAAGATTTGA+AGG - chr3_3:88390829-88390848 Msa0481970:intron 15.0%
!! AAAAAATTTAAAAAGACTGA+TGG + chr3_3:88391127-88391146 None:intergenic 15.0%
!!! AATTAACTTTTTTTTGCTTA+AGG - chr3_3:88391750-88391769 Msa0481970:intron 15.0%
!!! ATGTATAAGTATTTTTATCA+TGG + chr3_3:88391897-88391916 None:intergenic 15.0%
!!! TCATTATAATATGAAGTATT+TGG + chr3_3:88392287-88392306 None:intergenic 15.0%
!! AATAGAATAAATTGGTAAAT+GGG - chr3_3:88392944-88392963 Msa0481970:intron 15.0%
!! TATAAATACAGAATTCAAAA+GGG + chr3_3:88393827-88393846 None:intergenic 15.0%
!! AAAATAAAAATGCTAAAGAA+CGG - chr3_3:88393876-88393895 Msa0481970:intron 15.0%
!! TCACAAATAATAAAAAATCA+TGG + chr3_3:88394449-88394468 None:intergenic 15.0%
!! ACTTAAATAGCTATAAATTG+CGG + chr3_3:88390280-88390299 None:intergenic 20.0%
!! GTTCATACATTCAAAAATAA+TGG + chr3_3:88391324-88391343 None:intergenic 20.0%
!! ATTATCATTTACAATTCAAG+CGG + chr3_3:88392207-88392226 None:intergenic 20.0%
!! TTAATAGAATCACTTCATAT+TGG + chr3_3:88392250-88392269 None:intergenic 20.0%
!!! TTATCTAATTGCTATTAAAC+AGG - chr3_3:88392537-88392556 Msa0481970:intron 20.0%
!!! TATCTAATTGCTATTAAACA+GGG - chr3_3:88392538-88392557 Msa0481970:intron 20.0%
!! TTAGGAAGAATAGAATAAAT+TGG - chr3_3:88392936-88392955 Msa0481970:intron 20.0%
!! GAATAGAATAAATTGGTAAA+TGG - chr3_3:88392943-88392962 Msa0481970:intron 20.0%
!! ATAGAATAAATTGGTAAATG+GGG - chr3_3:88392945-88392964 Msa0481970:intron 20.0%
!!! ACATTATTAAGTTTTCTATC+TGG + chr3_3:88392985-88393004 None:intergenic 20.0%
!! CTATAAATACAGAATTCAAA+AGG + chr3_3:88393828-88393847 None:intergenic 20.0%
!! AATTCTGTATTTATAGATGT+TGG - chr3_3:88393832-88393851 Msa0481970:intron 20.0%
!! AAATTTGTAAATAGTTATGG+TGG - chr3_3:88394039-88394058 Msa0481970:intron 20.0%
!! TATTGACAATGTATTTGAAA+TGG - chr3_3:88394419-88394438 Msa0481970:five_prime_UTR 20.0%
! CTCATGAAATTCAAAAACAT+TGG - chr3_3:88389678-88389697 Msa0481970:three_prime_UTR 25.0%
! AAAATGAAAACCCTAATAAG+AGG + chr3_3:88389913-88389932 None:intergenic 25.0%
! ATAAAAAATAAGCCAATCCA+TGG - chr3_3:88390558-88390577 Msa0481970:intron 25.0%
!! AAGGATGTTTTTCTAACAAT+GGG - chr3_3:88390848-88390867 Msa0481970:intron 25.0%
! TTGAAGTTGTAATGAAGTAA+TGG - chr3_3:88391178-88391197 Msa0481970:intron 25.0%
! TGAAGTTGTAATGAAGTAAT+GGG - chr3_3:88391179-88391198 Msa0481970:intron 25.0%
! TACCACTTTGATACATAAAA+GGG + chr3_3:88391216-88391235 None:intergenic 25.0%
! AGTGGTAGAATTAATGAAAT+TGG - chr3_3:88391229-88391248 Msa0481970:intron 25.0%
! GTGGTAGAATTAATGAAATT+GGG - chr3_3:88391230-88391249 Msa0481970:intron 25.0%
!! TATGGATTAAAAGAGAAGAT+GGG + chr3_3:88391602-88391621 None:intergenic 25.0%
!! ATATGGATTAAAAGAGAAGA+TGG + chr3_3:88391603-88391622 None:intergenic 25.0%
!! TTTTAATCCATATGAAACTC+TGG - chr3_3:88391610-88391629 Msa0481970:intron 25.0%
! AAATTTGATGAATCCAAATG+AGG - chr3_3:88391852-88391871 Msa0481970:intron 25.0%
! GTATATAAAATCATAAGTGC+AGG + chr3_3:88391928-88391947 None:intergenic 25.0%
! GTTCAATAATACATATGAAC+TGG + chr3_3:88392354-88392373 None:intergenic 25.0%
! ATTATTGAACTGTTCAAACA+TGG - chr3_3:88392364-88392383 Msa0481970:intron 25.0%
!!! TTTATTGATTCAGCTTTTAC+AGG + chr3_3:88393356-88393375 None:intergenic 25.0%
! AAGCTGAATCAATAAATTAG+TGG - chr3_3:88393360-88393379 Msa0481970:intron 25.0%
!!! TAAGTTATAGCTTTAATGCT+TGG + chr3_3:88393536-88393555 None:intergenic 25.0%
!!! AATTCAAAAGGGCATTATTT+CGG + chr3_3:88393816-88393835 None:intergenic 25.0%
! TTGTGACAATGTATTTGAAA+TGG - chr3_3:88394463-88394482 Msa0481970:five_prime_UTR 25.0%
GCATAGTTTAATTGAGAAAC+TGG - chr3_3:88389621-88389640 Msa0481970:three_prime_UTR 30.0%
! TTCACTCTTTTCCTCTTATT+AGG - chr3_3:88389899-88389918 Msa0481970:three_prime_UTR 30.0%
! TCACTCTTTTCCTCTTATTA+GGG - chr3_3:88389900-88389919 Msa0481970:three_prime_UTR 30.0%
TGAGGTTAAAGACAAATTGA+AGG - chr3_3:88389959-88389978 Msa0481970:three_prime_UTR 30.0%
TAAAGACAAATTGAAGGAAG+TGG - chr3_3:88389965-88389984 Msa0481970:three_prime_UTR 30.0%
AAAAATAAGCCAATCCAAAC+GGG + chr3_3:88390363-88390382 None:intergenic 30.0%
CAAAAATAAGCCAATCCAAA+CGG + chr3_3:88390364-88390383 None:intergenic 30.0%
TCTTATTCATAAGCTTGTCA+AGG - chr3_3:88390426-88390445 Msa0481970:intron 30.0%
AATTATGATGTCAACAACCA+TGG + chr3_3:88390578-88390597 None:intergenic 30.0%
ATGGTTGTTGACATCATAAT+TGG - chr3_3:88390577-88390596 Msa0481970:intron 30.0%
ATCTCAATACTTATGCAAGA+TGG + chr3_3:88390651-88390670 None:intergenic 30.0%
TTGAGATTACATGTACTATG+AGG - chr3_3:88390664-88390683 Msa0481970:intron 30.0%
!! GTAAATCTCTGTTTTTCTTC+TGG - chr3_3:88390735-88390754 Msa0481970:intron 30.0%
! GAAGGATGTTTTTCTAACAA+TGG - chr3_3:88390847-88390866 Msa0481970:intron 30.0%
! TAACTATGTTGTGATCGTTT+TGG - chr3_3:88390961-88390980 Msa0481970:intron 30.0%
! AACTATGTTGTGATCGTTTT+GGG - chr3_3:88390962-88390981 Msa0481970:intron 30.0%
!! TTATTGGTTTACTACATCTC+TGG - chr3_3:88391004-88391023 Msa0481970:intron 30.0%
! ATGAAGTAATGGGATATCAT+TGG - chr3_3:88391189-88391208 Msa0481970:intron 30.0%
CTACCACTTTGATACATAAA+AGG + chr3_3:88391217-88391236 None:intergenic 30.0%
AAGCTTGTCTTGTACAAAAT+CGG - chr3_3:88391261-88391280 Msa0481970:intron 30.0%
! ATGGATTAAAAGAGAAGATG+GGG + chr3_3:88391601-88391620 None:intergenic 30.0%
!! TACTTGGTTTTCATGTCAAA+GGG - chr3_3:88391711-88391730 Msa0481970:intron 30.0%
CTTATTAGTTATGCTCTTCA+GGG - chr3_3:88391806-88391825 Msa0481970:intron 30.0%
TTATTAGTTATGCTCTTCAG+GGG - chr3_3:88391807-88391826 Msa0481970:intron 30.0%
AAAGATAAAAGAGATGGTGT+AGG + chr3_3:88391980-88391999 None:intergenic 30.0%
ACACTGAAAGATAAAAGAGA+TGG + chr3_3:88391986-88392005 None:intergenic 30.0%
!! CATCTGTCTTGTTTAATTCA+TGG + chr3_3:88392049-88392068 None:intergenic 30.0%
CATGAATTAAACAAGACAGA+TGG - chr3_3:88392047-88392066 Msa0481970:CDS 30.0%
TTAAGTTTGTCAGAGTAATG+AGG - chr3_3:88392075-88392094 Msa0481970:CDS 30.0%
ATATTGGAGTTCTGCATATT+TGG + chr3_3:88392234-88392253 None:intergenic 30.0%
TAAATAGTATCTTCGCTTGT+TGG - chr3_3:88392477-88392496 Msa0481970:CDS 30.0%
TTGTTGGAAATTGGATGAAA+GGG - chr3_3:88392493-88392512 Msa0481970:intron 30.0%
AAAGCAGAATTAGGAGATAA+AGG + chr3_3:88392738-88392757 None:intergenic 30.0%
!!! AATTTTTTGTTAAACCACCC+AGG - chr3_3:88392815-88392834 Msa0481970:intron 30.0%
!!! ACAAGCACTTTTTTTTGAAG+AGG - chr3_3:88392906-88392925 Msa0481970:intron 30.0%
!!! CAAGCACTTTTTTTTGAAGA+GGG - chr3_3:88392907-88392926 Msa0481970:intron 30.0%
AATAAATTGGTAAATGGGGT+AGG - chr3_3:88392949-88392968 Msa0481970:intron 30.0%
ATAAATTGGTAAATGGGGTA+GGG - chr3_3:88392950-88392969 Msa0481970:intron 30.0%
TGTATGTGAGAGAATAAAGA+AGG - chr3_3:88393034-88393053 Msa0481970:intron 30.0%
GTATGTGAGAGAATAAAGAA+GGG - chr3_3:88393035-88393054 Msa0481970:intron 30.0%
ACTGTTCCAATGTAATATCT+GGG - chr3_3:88393251-88393270 Msa0481970:intron 30.0%
! GAAAATTTCTGAAGAACTAC+AGG - chr3_3:88393440-88393459 Msa0481970:intron 30.0%
CCATTTGTTTAGATCATTAG+AGG + chr3_3:88393503-88393522 None:intergenic 30.0%
CCTCTAATGATCTAAACAAA+TGG - chr3_3:88393500-88393519 Msa0481970:intron 30.0%
!! TAAATGGAGGCATTATCTAA+TGG - chr3_3:88393774-88393793 Msa0481970:intron 30.0%
!! AAATGGAGGCATTATCTAAT+GGG - chr3_3:88393775-88393794 Msa0481970:intron 30.0%
GTTGGATTAAAATGATTGAG+TGG - chr3_3:88393850-88393869 Msa0481970:intron 30.0%
GACTAGGAGATAAAATACAA+AGG - chr3_3:88394134-88394153 Msa0481970:CDS 30.0%
!! TGAATTTGTTAGCAAACACT+TGG + chr3_3:88394237-88394256 None:intergenic 30.0%
TTCAAAAATAGCTTAGCAAC+CGG + chr3_3:88394286-88394305 None:intergenic 30.0%
AAAAACATTGGATACGAGTG+AGG - chr3_3:88389690-88389709 Msa0481970:three_prime_UTR 35.0%
!! TTTGATGGATTGGAAGGATT+TGG + chr3_3:88389815-88389834 None:intergenic 35.0%
CTCATCTAATTGAACTGAGA+AGG + chr3_3:88389943-88389962 None:intergenic 35.0%
CTTCTCAGTTCAATTAGATG+AGG - chr3_3:88389941-88389960 Msa0481970:three_prime_UTR 35.0%
! GAATTGGTTAAAGTACTTGC+AGG - chr3_3:88389993-88390012 Msa0481970:exon 35.0%
TTGCAGGTTCGTTTGTATTT+GGG - chr3_3:88390009-88390028 Msa0481970:CDS 35.0%
TCTCAACTCAAGTATTCAAG+AGG - chr3_3:88390176-88390195 Msa0481970:intron 35.0%
ATACAGATTCACACTCTGTT+TGG - chr3_3:88390311-88390330 Msa0481970:intron 35.0%
GTTGACATCATAATTGGACA+TGG - chr3_3:88390583-88390602 Msa0481970:intron 35.0%
TACTTATGCAAGATGGCATT+TGG + chr3_3:88390644-88390663 None:intergenic 35.0%
AGCATAGAACTAGTAAGACA+TGG - chr3_3:88390759-88390778 Msa0481970:intron 35.0%
! ACTATGTTGTGATCGTTTTG+GGG - chr3_3:88390963-88390982 Msa0481970:intron 35.0%
! GTCCCTTTTATGTATCAAAG+TGG - chr3_3:88391211-88391230 Msa0481970:intron 35.0%
AGCTTGTCTTGTACAAAATC+GGG - chr3_3:88391262-88391281 Msa0481970:intron 35.0%
!!! CGCATTCTATGTTTTGATTG+AGG - chr3_3:88391455-88391474 Msa0481970:CDS 35.0%
TGGATTAAAAGAGAAGATGG+GGG + chr3_3:88391600-88391619 None:intergenic 35.0%
TGAACATACAGATGAAACAC+AGG - chr3_3:88391664-88391683 Msa0481970:intron 35.0%
!! GTACTTGGTTTTCATGTCAA+AGG - chr3_3:88391710-88391729 Msa0481970:intron 35.0%
!! ACTTGGTTTTCATGTCAAAG+GGG - chr3_3:88391712-88391731 Msa0481970:intron 35.0%
! CCTGAAGAGCATAACTAATA+AGG + chr3_3:88391808-88391827 None:intergenic 35.0%
CCTTATTAGTTATGCTCTTC+AGG - chr3_3:88391805-88391824 Msa0481970:intron 35.0%
!! GTAAAAGAGTACTCCTCATT+TGG + chr3_3:88391868-88391887 None:intergenic 35.0%
!! TTTCAAGAAGCATTGACACA+AGG - chr3_3:88392104-88392123 Msa0481970:CDS 35.0%
! TATCTTCGCTTGTTGGAAAT+TGG - chr3_3:88392484-88392503 Msa0481970:intron 35.0%
CTTGTTGGAAATTGGATGAA+AGG - chr3_3:88392492-88392511 Msa0481970:intron 35.0%
GTTCTAACAACAGTTAATCC+TGG - chr3_3:88392567-88392586 Msa0481970:intron 35.0%
TAGAAGTGATTCTACAACCA+TGG - chr3_3:88392632-88392651 Msa0481970:intron 35.0%
AGAAAAAAGAAGTTCGCAGA+AGG - chr3_3:88392700-88392719 Msa0481970:intron 35.0%
CGAACAGATAAAGCAGAATT+AGG + chr3_3:88392747-88392766 None:intergenic 35.0%
GTAATTCATACCTTCAAACG+TGG + chr3_3:88392777-88392796 None:intergenic 35.0%
GTGATCATAAACGTATACCT+GGG + chr3_3:88392835-88392854 None:intergenic 35.0%
! AAAGTATCAACATTCCAGAG+TGG + chr3_3:88392857-88392876 None:intergenic 35.0%
!! TTTTGAAGAGGGTGTGTTTT+AGG - chr3_3:88392918-88392937 Msa0481970:intron 35.0%
GAGAGAATAAAGAAGGGTTA+TGG - chr3_3:88393041-88393060 Msa0481970:intron 35.0%
GACAACAAGAATACAAGCTA+GGG + chr3_3:88393071-88393090 None:intergenic 35.0%
TGACAACAAGAATACAAGCT+AGG + chr3_3:88393072-88393091 None:intergenic 35.0%
ATCAACTCTTGGAAGGTAAA+AGG + chr3_3:88393154-88393173 None:intergenic 35.0%
! TTTTACCTTCCAAGAGTTGA+TGG - chr3_3:88393153-88393172 Msa0481970:intron 35.0%
! TTTACCTTCCAAGAGTTGAT+GGG - chr3_3:88393154-88393173 Msa0481970:intron 35.0%
! CTTACGAAAGGTGTAATAGA+GGG - chr3_3:88393190-88393209 Msa0481970:intron 35.0%
GACTGTTCCAATGTAATATC+TGG - chr3_3:88393250-88393269 Msa0481970:intron 35.0%
CTGTTCCAATGTAATATCTG+GGG - chr3_3:88393252-88393271 Msa0481970:intron 35.0%
TGTTCCAATGTAATATCTGG+GGG - chr3_3:88393253-88393272 Msa0481970:intron 35.0%
TTTACCCCCAGATATTACAT+TGG + chr3_3:88393260-88393279 None:intergenic 35.0%
! TTTAAGGCCTTCACGTATTT+GGG + chr3_3:88393391-88393410 None:intergenic 35.0%
!!! TTTTAAGGCCTTCACGTATT+TGG + chr3_3:88393392-88393411 None:intergenic 35.0%
AATACGTGAAGGCCTTAAAA+AGG - chr3_3:88393392-88393411 Msa0481970:intron 35.0%
! TGAAGGCCTTAAAAAGGTTT+TGG - chr3_3:88393398-88393417 Msa0481970:intron 35.0%
! GAAGGCCTTAAAAAGGTTTT+GGG - chr3_3:88393399-88393418 Msa0481970:intron 35.0%
! AAGGCCTTAAAAAGGTTTTG+GGG - chr3_3:88393400-88393419 Msa0481970:intron 35.0%
ATCTCAAGCAATTCAGTAAG+CGG + chr3_3:88393478-88393497 None:intergenic 35.0%
ATAACTTAACTGTCTGTCCT+AGG - chr3_3:88393548-88393567 Msa0481970:intron 35.0%
TAAAAGCCATGACCAAATCT+GGG + chr3_3:88393585-88393604 None:intergenic 35.0%
ATAAAAGCCATGACCAAATC+TGG + chr3_3:88393586-88393605 None:intergenic 35.0%
TGATGTTTCGAGAAATGCTT+GGG - chr3_3:88393615-88393634 Msa0481970:intron 35.0%
!! AATGGAGGCATTATCTAATG+GGG - chr3_3:88393776-88393795 Msa0481970:intron 35.0%
GGGCATTATTTCGGATAATA+AGG + chr3_3:88393807-88393826 None:intergenic 35.0%
GGAGTCATAAAACCTAGAAA+AGG + chr3_3:88393943-88393962 None:intergenic 35.0%
!! TAGGTTTTATGACTCCTTCT+TGG - chr3_3:88393947-88393966 Msa0481970:CDS 35.0%
!! AGGTTTTATGACTCCTTCTT+GGG - chr3_3:88393948-88393967 Msa0481970:CDS 35.0%
TGTATCATATGTGACAGACT+AGG - chr3_3:88394118-88394137 Msa0481970:intron 35.0%
ATGTAACCGTCATGTCATTA+GGG - chr3_3:88394384-88394403 Msa0481970:CDS 35.0%
AAAAAGCTCGAACGTTGTTG+TGG + chr3_3:88389652-88389671 None:intergenic 40.0%
GAAGGATTTGGAAAAGGAAG+CGG + chr3_3:88389803-88389822 None:intergenic 40.0%
GGATTGGAAGGATTTGGAAA+AGG + chr3_3:88389809-88389828 None:intergenic 40.0%
GAAGGAAGTGGAAGATGAAT+TGG - chr3_3:88389977-88389996 Msa0481970:three_prime_UTR 40.0%
CTTGCAGGTTCGTTTGTATT+TGG - chr3_3:88390008-88390027 Msa0481970:CDS 40.0%
TTCAGAAAAGACGCGTAAAG+AGG - chr3_3:88390098-88390117 Msa0481970:intron 40.0%
TTTCTATCGCAGCAATCACT+CGG - chr3_3:88390228-88390247 Msa0481970:intron 40.0%
CTATAAATTGCGGCATTTGC+AGG + chr3_3:88390270-88390289 None:intergenic 40.0%
! ATTCACACTCTGTTTGGTGA+AGG - chr3_3:88390317-88390336 Msa0481970:intron 40.0%
TGATGTCAACAACCATGGAT+TGG + chr3_3:88390573-88390592 None:intergenic 40.0%
TACTATGAGGTTGTCATGTC+TGG - chr3_3:88390677-88390696 Msa0481970:intron 40.0%
!!! TTTTGGGGTTTCTGTTTGCT+GGG - chr3_3:88390978-88390997 Msa0481970:intron 40.0%
TGAGATTCTCTCTTCAACCT+CGG + chr3_3:88391052-88391071 None:intergenic 40.0%
ATCTCAACCAAGTGACTTCT+CGG - chr3_3:88391066-88391085 Msa0481970:intron 40.0%
GGAAGTGAGCATCATGATAT+CGG + chr3_3:88391303-88391322 None:intergenic 40.0%
ATTAAAAGAGAAGATGGGGG+AGG + chr3_3:88391597-88391616 None:intergenic 40.0%
ACATACAGATGAAACACAGG+AGG - chr3_3:88391667-88391686 Msa0481970:intron 40.0%
TACCCTGTTATACCAAGAGA+TGG + chr3_3:88391693-88391712 None:intergenic 40.0%
! TCTTGGTATAACAGGGTACT+TGG - chr3_3:88391695-88391714 Msa0481970:intron 40.0%
!! CTTGGTTTTCATGTCAAAGG+GGG - chr3_3:88391713-88391732 Msa0481970:intron 40.0%
TCTTCAATACCATCGAAGGA+AGG + chr3_3:88392020-88392039 None:intergenic 40.0%
ATGAGTGTATGCATGTGATG+CGG - chr3_3:88392153-88392172 Msa0481970:intron 40.0%
GATATAAAGGCAGATTCTCC+AGG + chr3_3:88392588-88392607 None:intergenic 40.0%
AGGAGCGGATGAAGATATAA+AGG + chr3_3:88392601-88392620 None:intergenic 40.0%
TTTATATCTTCATCCGCTCC+TGG - chr3_3:88392600-88392619 Msa0481970:intron 40.0%
! CACTTCATGCTCATTTTCCA+TGG + chr3_3:88392652-88392671 None:intergenic 40.0%
CATGGAAAATGAGCATGAAG+TGG - chr3_3:88392650-88392669 Msa0481970:intron 40.0%
AGTTCGCAGAAGGAAAAGTT+TGG - chr3_3:88392710-88392729 Msa0481970:intron 40.0%
ATCATAAACGTATACCTGGG+TGG + chr3_3:88392832-88392851 None:intergenic 40.0%
GGTGATCATAAACGTATACC+TGG + chr3_3:88392836-88392855 None:intergenic 40.0%
TACGTTTATGATCACCACTC+TGG - chr3_3:88392840-88392859 Msa0481970:intron 40.0%
TCTGATTCTGGCATGTCATT+TGG - chr3_3:88393115-88393134 Msa0481970:intron 40.0%
GAATTGTGAAGGCTTACGAA+AGG - chr3_3:88393178-88393197 Msa0481970:intron 40.0%
! GCTTACGAAAGGTGTAATAG+AGG - chr3_3:88393189-88393208 Msa0481970:intron 40.0%
ACAGTCGAAAAACCTTCTTC+AGG + chr3_3:88393236-88393255 None:intergenic 40.0%
TGAAGAAGCTGTAGTGTCTT+TGG - chr3_3:88393293-88393312 Msa0481970:intron 40.0%
GCCAAATTGCGTCACAAAAT+GGG - chr3_3:88393315-88393334 Msa0481970:intron 40.0%
CCAAATTGCGTCACAAAATG+GGG - chr3_3:88393316-88393335 Msa0481970:intron 40.0%
TTAAGGCCTTCACGTATTTG+GGG + chr3_3:88393390-88393409 None:intergenic 40.0%
!! AGGCCTTAAAAAGGTTTTGG+GGG - chr3_3:88393401-88393420 Msa0481970:intron 40.0%
! CAACCCCCAAAACCTTTTTA+AGG + chr3_3:88393407-88393426 None:intergenic 40.0%
!!! AAAAGGTTTTGGGGGTTGAT+AGG - chr3_3:88393409-88393428 Msa0481970:intron 40.0%
AAGCAATTCAGTAAGCGGTT+TGG + chr3_3:88393473-88393492 None:intergenic 40.0%
CTGATGTTTCGAGAAATGCT+TGG - chr3_3:88393614-88393633 Msa0481970:intron 40.0%
TTCCTTGCCTAACAACTATC+AGG - chr3_3:88393672-88393691 Msa0481970:intron 40.0%
TCCTTGCCTAACAACTATCA+GGG - chr3_3:88393673-88393692 Msa0481970:intron 40.0%
AGAGCTAATGACTATAGTGC+AGG - chr3_3:88393725-88393744 Msa0481970:intron 40.0%
TTAAGTGCAGTTGAGTAGGT+CGG + chr3_3:88393911-88393930 None:intergenic 40.0%
TACTCAACTGCACTTAACCT+GGG - chr3_3:88393914-88393933 Msa0481970:CDS 40.0%
TACGATTCTTGTGCAGAACT+CGG - chr3_3:88394086-88394105 Msa0481970:intron 40.0%
AGCATCAATCAAATGAGCAG+TGG + chr3_3:88394167-88394186 None:intergenic 40.0%
TAGCAAACACTTGGCAACTT+GGG + chr3_3:88394228-88394247 None:intergenic 40.0%
TTAGCAAACACTTGGCAACT+TGG + chr3_3:88394229-88394248 None:intergenic 40.0%
CAAACGACGTATCTATGTTC+CGG - chr3_3:88394264-88394283 Msa0481970:intron 40.0%
ACCATGATGTCAATGTAGTC+TGG - chr3_3:88394306-88394325 Msa0481970:CDS 40.0%
ACCAGACTACATTGACATCA+TGG + chr3_3:88394310-88394329 None:intergenic 40.0%
GACATGACGGTTACATGATT+TGG + chr3_3:88394380-88394399 None:intergenic 40.0%
CATGTAACCGTCATGTCATT+AGG - chr3_3:88394383-88394402 Msa0481970:CDS 40.0%
AACATTGGATACGAGTGAGG+AGG - chr3_3:88389693-88389712 Msa0481970:three_prime_UTR 45.0%
TGAGGAGGAGAACAGAAAGA+TGG - chr3_3:88389708-88389727 Msa0481970:three_prime_UTR 45.0%
!!! GGTGGTTTTGATGGATTGGA+AGG + chr3_3:88389821-88389840 None:intergenic 45.0%
!!! TTGTTGTGCGGTGGTTTTGA+TGG + chr3_3:88389830-88389849 None:intergenic 45.0%
!!! AGTTTTCGCGGTTTGTTGTG+CGG + chr3_3:88389842-88389861 None:intergenic 45.0%
CAACAAACCGCGAAAACTCA+AGG - chr3_3:88389844-88389863 Msa0481970:three_prime_UTR 45.0%
! CTGAAGACCTTGAGTTTTCG+CGG + chr3_3:88389854-88389873 None:intergenic 45.0%
GCGAAAACTCAAGGTCTTCA+GGG - chr3_3:88389853-88389872 Msa0481970:three_prime_UTR 45.0%
GGATGCTATTGCTTCTGCTA+AGG - chr3_3:88390140-88390159 Msa0481970:intron 45.0%
GTATTCAAGAGGTTCGAACG+AGG - chr3_3:88390187-88390206 Msa0481970:intron 45.0%
! GAATTGACTTAGTGCCCGTT+TGG - chr3_3:88390346-88390365 Msa0481970:intron 45.0%
!!! GTTTTGGGGTTTCTGTTTGC+TGG - chr3_3:88390977-88390996 Msa0481970:intron 45.0%
! TCTGTTTGCTGGGTGGTTAT+TGG - chr3_3:88390988-88391007 Msa0481970:intron 45.0%
GTTTACTACATCTCTGGTGC+CGG - chr3_3:88391010-88391029 Msa0481970:intron 45.0%
TTTACTACATCTCTGGTGCC+GGG - chr3_3:88391011-88391030 Msa0481970:intron 45.0%
TCTCTTCAACCTCGGAAACT+TGG + chr3_3:88391044-88391063 None:intergenic 45.0%
TCTCAACCAAGTGACTTCTC+GGG - chr3_3:88391067-88391086 Msa0481970:intron 45.0%
GATGCTGCCAGAGTTTCATA+TGG + chr3_3:88391620-88391639 None:intergenic 45.0%
AAACTCTGGCAGCATCTGAA+GGG - chr3_3:88391624-88391643 Msa0481970:intron 45.0%
ATCTGAAGGGAGGTTGAATG+AGG - chr3_3:88391637-88391656 Msa0481970:intron 45.0%
TCTGAAGGGAGGTTGAATGA+GGG - chr3_3:88391638-88391657 Msa0481970:intron 45.0%
AGGCCATCTCTTGGTATAAC+AGG - chr3_3:88391687-88391706 Msa0481970:intron 45.0%
GGCCATCTCTTGGTATAACA+GGG - chr3_3:88391688-88391707 Msa0481970:intron 45.0%
CAGCTCTTCAATACCATCGA+AGG + chr3_3:88392024-88392043 None:intergenic 45.0%
! CTTCGATGGTATTGAAGAGC+TGG - chr3_3:88392022-88392041 Msa0481970:CDS 45.0%
TCACTTCTAACAGATGTGCC+AGG + chr3_3:88392621-88392640 None:intergenic 45.0%
ATACCTTCAAACGTGGAGAC+TGG + chr3_3:88392770-88392789 None:intergenic 45.0%
AGTCAGCTGCTATCTGATTC+TGG - chr3_3:88393103-88393122 Msa0481970:intron 45.0%
ACAATTCGCCCATCAACTCT+TGG + chr3_3:88393165-88393184 None:intergenic 45.0%
!! AGTTGATGGGCGAATTGTGA+AGG - chr3_3:88393167-88393186 Msa0481970:intron 45.0%
GGCCAAATTGCGTCACAAAA+TGG - chr3_3:88393314-88393333 Msa0481970:intron 45.0%
! CCCCATTTTGTGACGCAATT+TGG + chr3_3:88393319-88393338 None:intergenic 45.0%
TCACAAAATGGGGTTGCTGT+AGG - chr3_3:88393326-88393345 Msa0481970:intron 45.0%
TGTTAGGCAAGGAAAGCTAG+AGG + chr3_3:88393666-88393685 None:intergenic 45.0%
TCCCTGATAGTTGTTAGGCA+AGG + chr3_3:88393677-88393696 None:intergenic 45.0%
TTGCCTAACAACTATCAGGG+AGG - chr3_3:88393676-88393695 Msa0481970:intron 45.0%
TGCCTAACAACTATCAGGGA+GGG - chr3_3:88393677-88393696 Msa0481970:intron 45.0%
TTCCCTCCCTGATAGTTGTT+AGG + chr3_3:88393682-88393701 None:intergenic 45.0%
GTCAGCAGTCAGTGTGTAAA+TGG - chr3_3:88393758-88393777 Msa0481970:intron 45.0%
AGCAGTCAGTGTGTAAATGG+AGG - chr3_3:88393761-88393780 Msa0481970:intron 45.0%
CAGGTTAAGTGCAGTTGAGT+AGG + chr3_3:88393915-88393934 None:intergenic 45.0%
CTACTCAACTGCACTTAACC+TGG - chr3_3:88393913-88393932 Msa0481970:CDS 45.0%
ACTCAACTGCACTTAACCTG+GGG - chr3_3:88393915-88393934 Msa0481970:CDS 45.0%
! TAACCTGGGGTTCCTTTTCT+AGG - chr3_3:88393928-88393947 Msa0481970:CDS 45.0%
AAACCTAGAAAAGGAACCCC+AGG + chr3_3:88393934-88393953 None:intergenic 45.0%
AATTGCCTGCAAGAGAACCT+CGG + chr3_3:88394204-88394223 None:intergenic 45.0%
CGGAACATAGATACGTCGTT+TGG + chr3_3:88394266-88394285 None:intergenic 45.0%
ATCACGCCCTAATGACATGA+CGG + chr3_3:88394393-88394412 None:intergenic 45.0%
AGCTCGAACGTTGTTGTGGT+GGG + chr3_3:88389648-88389667 None:intergenic 50.0%
AAGCTCGAACGTTGTTGTGG+TGG + chr3_3:88389649-88389668 None:intergenic 50.0%
TGTGATTTCTGCTTCGCAGC+GGG + chr3_3:88389752-88389771 None:intergenic 50.0%
GTGTGATTTCTGCTTCGCAG+CGG + chr3_3:88389753-88389772 None:intergenic 50.0%
!!! GTGCGGTGGTTTTGATGGAT+TGG + chr3_3:88389825-88389844 None:intergenic 50.0%
CGCGAAAACTCAAGGTCTTC+AGG - chr3_3:88389852-88389871 Msa0481970:three_prime_UTR 50.0%
GCGTAAAGAGGCTAAGCGAA+TGG - chr3_3:88390110-88390129 Msa0481970:intron 50.0%
!! GGCTAAGCGAATGGCTTTGT+TGG - chr3_3:88390119-88390138 Msa0481970:intron 50.0%
GCTTCTGCTAAGGCTAGAGT+TGG - chr3_3:88390150-88390169 Msa0481970:intron 50.0%
GCGGCATTTGCAGGAAAAAG+AGG + chr3_3:88390261-88390280 None:intergenic 50.0%
GACTTAGTGCCCGTTTGGAT+TGG - chr3_3:88390351-88390370 Msa0481970:intron 50.0%
GAAACTCTGGCAGCATCTGA+AGG - chr3_3:88391623-88391642 Msa0481970:intron 50.0%
AAACACAGGAGGCCATCTCT+TGG - chr3_3:88391678-88391697 Msa0481970:intron 50.0%
TTTCATGTCAAAGGGGGACG+TGG - chr3_3:88391719-88391738 Msa0481970:intron 50.0%
CGTTGTGAACCTTCCTTCGA+TGG - chr3_3:88392008-88392027 Msa0481970:intron 50.0%
! GATGCGGTAGCTCTGCATAT+TGG - chr3_3:88392169-88392188 Msa0481970:intron 50.0%
TCTAACAGATGTGCCAGGAG+CGG + chr3_3:88392616-88392635 None:intergenic 50.0%
TTCGCCCATCAACTCTTGGA+AGG + chr3_3:88393161-88393180 None:intergenic 50.0%
AGGTGCTCAACGAGTTCTTG+TGG + chr3_3:88393216-88393235 None:intergenic 50.0%
ACTCGTTGAGCACCTGAAGA+AGG - chr3_3:88393221-88393240 Msa0481970:intron 50.0%
GCTCTTAGCAGTCCCAGATT+TGG - chr3_3:88393570-88393589 Msa0481970:intron 50.0%
! AGCAGTCCCAGATTTGGTCA+TGG - chr3_3:88393576-88393595 Msa0481970:intron 50.0%
!! GGAGGCATTATCTAATGGGG+AGG - chr3_3:88393779-88393798 Msa0481970:intron 50.0%
TATGACTCCTTCTTGGGTCC+TGG - chr3_3:88393954-88393973 Msa0481970:CDS 50.0%
ATTGCCTGCAAGAGAACCTC+GGG + chr3_3:88394203-88394222 None:intergenic 50.0%
GCTCGAACGTTGTTGTGGTG+GGG + chr3_3:88389647-88389666 None:intergenic 55.0%
!! TTCTGCTTCGCAGCGGGTTA+AGG + chr3_3:88389746-88389765 None:intergenic 55.0%
!! TTTCGCGGTTTGTTGTGCGG+TGG + chr3_3:88389839-88389858 None:intergenic 55.0%
! TGGGGTTTCTGTTTGCTGGG+TGG - chr3_3:88390981-88391000 Msa0481970:intron 55.0%
! CGGAAACTTGGTTCGAGACC+CGG + chr3_3:88391032-88391051 None:intergenic 55.0%
GGTCTCGAACCAAGTTTCCG+AGG - chr3_3:88391032-88391051 Msa0481970:intron 55.0%
CTGTCTCCCGAGAAGTCACT+TGG + chr3_3:88391076-88391095 None:intergenic 55.0%
CAAGTGACTTCTCGGGAGAC+AGG - chr3_3:88391074-88391093 Msa0481970:intron 55.0%
ACTTCTCGGGAGACAGGCAT+TGG - chr3_3:88391080-88391099 Msa0481970:intron 55.0%
GAGCATGAAGTGGAACGCTC+TGG - chr3_3:88392660-88392679 Msa0481970:intron 55.0%
TCGCCAGTCTCCACGTTTGA+AGG - chr3_3:88392764-88392783 Msa0481970:intron 55.0%
! TCTGGGACTGCTAAGAGCCT+AGG + chr3_3:88393568-88393587 None:intergenic 55.0%
TTGCCTGCAAGAGAACCTCG+GGG + chr3_3:88394202-88394221 None:intergenic 55.0%
!! TGCTTCGCAGCGGGTTAAGG+AGG + chr3_3:88389743-88389762 None:intergenic 60.0%
GAGAAGATGGGGGAGGTGAG+AGG + chr3_3:88391590-88391609 None:intergenic 60.0%
CTCTGGCAGCATCTGAAGGG+AGG - chr3_3:88391627-88391646 Msa0481970:intron 60.0%
GGCCTGCCCCAAATACGTGA+AGG - chr3_3:88393381-88393400 Msa0481970:intron 60.0%
! GGCCTTCACGTATTTGGGGC+AGG + chr3_3:88393386-88393405 None:intergenic 60.0%
! TAAAGCACCCCAGGACCAGG+AGG + chr3_3:88393980-88393999 None:intergenic 60.0%
! TCCTGGTCCTGGGGTGCTTT+AGG - chr3_3:88393979-88393998 Msa0481970:CDS 60.0%
! TGGGGTGCTTTAGGCGTGCA+GGG - chr3_3:88393988-88394007 Msa0481970:CDS 60.0%
GCTACATACTGAGCTCCCCG+AGG - chr3_3:88394184-88394203 Msa0481970:intron 60.0%
!! GGAAGCGGCGAAAGCGTCGA+CGG + chr3_3:88389788-88389807 None:intergenic 65.0%
CAGGAGGCCAGGACCCAAGA+AGG + chr3_3:88393964-88393983 None:intergenic 65.0%
CTTCTTGGGTCCTGGCCTCC+TGG - chr3_3:88393962-88393981 Msa0481970:CDS 65.0%
! GCCTAAAGCACCCCAGGACC+AGG + chr3_3:88393983-88394002 None:intergenic 65.0%
! CTGCACGCCTAAAGCACCCC+AGG + chr3_3:88393989-88394008 None:intergenic 65.0%
! CTGGGGTGCTTTAGGCGTGC+AGG - chr3_3:88393987-88394006 Msa0481970:CDS 65.0%
GCTCCCCGAGGTTCTCTTGC+AGG - chr3_3:88394196-88394215 Msa0481970:intron 65.0%
!! CGGCGAAAGCGTCGACGGTG+TGG + chr3_3:88389783-88389802 None:intergenic 70.0%
GGTCCTGGCCTCCTGGTCCT+GGG - chr3_3:88393969-88393988 Msa0481970:CDS 70.0%
GTCCTGGCCTCCTGGTCCTG+GGG - chr3_3:88393970-88393989 Msa0481970:CDS 70.0%
GGGTCCTGGCCTCCTGGTCC+TGG - chr3_3:88393968-88393987 Msa0481970:CDS 75.0%
CACCCCAGGACCAGGAGGCC+AGG + chr3_3:88393975-88393994 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 88389613 88394524 88389613 ID=Msa0481970;Name=Msa0481970
chr3_3 mRNA 88389613 88394524 88389613 ID=Msa0481970-mRNA-1;Parent=Msa0481970;Name=Msa0481970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=114|1|1|1|1|1|8|393|308
chr3_3 exon 88389613 88390035 88389613 ID=Msa0481970-mRNA-1:exon:25831;Parent=Msa0481970-mRNA-1
chr3_3 exon 88391352 88391578 88391352 ID=Msa0481970-mRNA-1:exon:25830;Parent=Msa0481970-mRNA-1
chr3_3 exon 88392012 88392134 88392012 ID=Msa0481970-mRNA-1:exon:25829;Parent=Msa0481970-mRNA-1
chr3_3 exon 88392221 88392310 88392221 ID=Msa0481970-mRNA-1:exon:25828;Parent=Msa0481970-mRNA-1
chr3_3 exon 88392397 88392501 88392397 ID=Msa0481970-mRNA-1:exon:25827;Parent=Msa0481970-mRNA-1
chr3_3 exon 88393888 88394034 88393888 ID=Msa0481970-mRNA-1:exon:25826;Parent=Msa0481970-mRNA-1
chr3_3 exon 88394123 88394188 88394123 ID=Msa0481970-mRNA-1:exon:25825;Parent=Msa0481970-mRNA-1
chr3_3 exon 88394272 88394524 88394272 ID=Msa0481970-mRNA-1:exon:25824;Parent=Msa0481970-mRNA-1
chr3_3 five_prime_UTR 88394411 88394524 88394411 ID=Msa0481970-mRNA-1:five_prime_utr;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88394272 88394410 88394272 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88394123 88394188 88394123 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88393888 88394034 88393888 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88392397 88392501 88392397 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88392221 88392310 88392221 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88392012 88392134 88392012 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88391352 88391578 88391352 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 CDS 88390006 88390035 88390006 ID=Msa0481970-mRNA-1:cds;Parent=Msa0481970-mRNA-1
chr3_3 three_prime_UTR 88389613 88390005 88389613 ID=Msa0481970-mRNA-1:three_prime_utr;Parent=Msa0481970-mRNA-1
Gene Sequence

>Msa0481970

ATGGAGTGCTCAACCTCCTTAACCCGCTGCGAAGCAGAAATCACACAACAAATCCACACCGTCGACGCTTTCGCCGCTTCCTTTTCCAAATCCTTCCAATCCATCAAAACCACCGCACAACAAACCGCGAAAACTCAAGTTCAATTAGATGAGGTTAAAGACAAATTGAAGGAAGTGGAAGATGAATTGGTTAAAGTACTTGCAGAAAAGACGCGTAAAGAGGCTAAGCGAATGGCTTTGTTGGATGCTATTGCTTCTGCTAAGGCTAGAGTTGGAAATCTCAACTCAAGTATTCAAGAGGTTCGAACGAGGAAACAAGAATATAATTCGTTTCTATCGCAGCAATCACTCGCATCTGAAGGGAGGTTGAATGAGGGCATTGAACATACAGATGAAACACAGGAGGCCATCTCTTGGTATAACAGGGTACTTGGTTTTCATGTCAAAGGGGGACGTGGGGTAAAGTTCACGTTCAAGAATATAAATTTGATGAATCCAAATGAGGAGTACTCTTTTACTGTCTTCCATGATAAAAATACTTATACATTGTTACGTTGTGAACCTTCCTTCGATGGTATTGAAGAGCTGGTCCATGAATTAAACAAGACAGATGGTCTGTTTAAGTTTGTCAGAGTAATGAGGAAAAAATTTCAAGAAGCATTGACACAAGGGAGCTTAGTTCTAACAACAGTTAATCCTGGAGAATCTGCCTTTATATCTTCATCCGCTCCTGGCACATCTGTTAGAAGTGATTCTACAACCATGGAAAATGAGCATGAAGTGGAACGCTCTGGCAGTAGTGCACAATTAAAGAAAAAAGAAGTTCGCAGAAGGAAAAGTTTGGCACCTTTATCTCCTAATTCTGCTTTATCTGTTCGCCAGTCTCCACGTTTGAAGAACTCGGCTAAACTGATGTATCATATGTGA

Protein sequence

>Msa0481970

MECSTSLTRCEAEITQQIHTVDAFAASFSKSFQSIKTTAQQTAKTQVQLDEVKDKLKEVEDELVKVLAEKTRKEAKRMALLDAIASAKARVGNLNSSIQEVRTRKQEYNSFLSQQSLASEGRLNEGIEHTDETQEAISWYNRVLGFHVKGGRGVKFTFKNINLMNPNEEYSFTVFHDKNTYTLLRCEPSFDGIEELVHELNKTDGLFKFVRVMRKKFQEALTQGSLVLTTVNPGESAFISSSAPGTSVRSDSTTMENEHEVERSGSSAQLKKKEVRRRKSLAPLSPNSALSVRQSPRLKNSAKLMYHM*