AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641740 MtrunA17_Chr4g0026521 90.847 295 24 1 1 292 1 295 3.13e-175 485
Msa0641740 MtrunA17_Chr2g0321291 68.404 307 71 9 5 290 6 307 2.16e-132 377
Msa0641740 MtrunA17_Chr2g0328921 63.136 236 79 2 36 264 53 287 6.10e-108 316
Msa0641740 MtrunA17_Chr8g0352011 65.611 221 62 4 72 279 110 329 3.29e-103 305
Msa0641740 MtrunA17_Chr1g0173841 60.558 251 69 6 64 287 137 384 1.24e-102 305
Msa0641740 MtrunA17_Chr7g0258011 54.122 279 85 5 43 290 73 339 1.74e-102 303
Msa0641740 MtrunA17_Chr5g0422571 64.055 217 65 4 75 288 65 271 7.96e-101 297
Msa0641740 MtrunA17_Chr4g0053341 59.375 224 81 2 43 263 6 222 2.66e-95 280
Msa0641740 MtrunA17_Chr1g0198651 70.391 179 48 3 104 278 90 267 4.50e-95 282
Msa0641740 MtrunA17_Chr1g0200421 37.805 164 90 6 122 277 245 404 4.43e-25 104
Msa0641740 MtrunA17_Chr2g0320341 34.615 156 95 5 115 263 231 386 7.42e-21 91.7
Msa0641740 MtrunA17_Chr4g0029521 34.756 164 90 5 105 259 36 191 2.28e-20 90.9
Msa0641740 MtrunA17_Chr2g0326381 31.818 176 109 4 98 269 31 199 4.06e-20 89.7
Msa0641740 MtrunA17_Chr1g0181381 34.932 146 86 4 115 259 54 191 5.18e-20 89.7
Msa0641740 MtrunA17_Chr1g0151351 35.461 141 82 4 120 259 62 194 1.96e-19 87.8
Msa0641740 MtrunA17_Chr3g0123941 35.260 173 99 8 120 288 130 293 2.66e-19 86.3
Msa0641740 MtrunA17_Chr7g0263941 36.054 147 82 6 115 259 50 186 3.56e-19 86.7
Msa0641740 MtrunA17_Chr8g0373541 32.558 172 98 7 97 259 23 185 3.58e-19 87.4
Msa0641740 MtrunA17_Chr1g0185121 34.694 147 85 5 115 259 56 193 3.67e-19 87.0
Msa0641740 MtrunA17_Chr7g0268961 35.252 139 80 4 122 259 45 174 5.58e-19 86.7
Msa0641740 MtrunA17_Chr1g0191991 35.714 140 78 5 122 259 86 215 1.63e-18 85.5
Msa0641740 MtrunA17_Chr8g0342421 30.435 184 108 7 86 259 41 214 1.64e-18 85.5
Msa0641740 MtrunA17_Chr8g0382121 37.410 139 80 5 130 263 127 263 2.58e-18 83.6
Msa0641740 MtrunA17_Chr2g0330171 31.707 164 100 5 98 259 45 198 3.79e-18 84.3
Msa0641740 MtrunA17_Chr1g0210821 34.014 147 85 5 115 259 60 196 6.03e-18 84.0
Msa0641740 MtrunA17_Chr1g0199101 31.902 163 99 6 99 259 47 199 7.19e-18 83.6
Msa0641740 MtrunA17_Chr3g0141431 33.129 163 91 5 105 257 20 174 8.18e-18 82.8
Msa0641740 MtrunA17_Chr1g0162971 35.000 140 79 5 122 259 64 193 2.07e-17 82.0
Msa0641740 MtrunA17_Chr2g0324991 34.507 142 83 5 115 254 8 141 2.88e-17 77.0
Msa0641740 MtrunA17_Chr1g0163001 33.333 147 86 5 115 259 59 195 5.08e-17 80.9
Msa0641740 MtrunA17_Chr4g0040571 29.448 163 105 4 98 259 38 191 5.14e-16 77.8
Msa0641740 MtrunA17_Chr8g0375521 30.935 139 85 5 120 255 48 178 1.41e-12 67.4
Msa0641740 MtrunA17_Chr6g0479921 27.607 163 106 5 122 282 52 204 1.83e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641740 AT1G08290.1 52.888 329 95 7 9 282 12 335 3.04e-108 318
Msa0641740 AT1G51220.1 51.056 284 108 4 11 263 30 313 1.13e-99 296
Msa0641740 AT3G57670.1 82.895 152 26 0 112 263 201 352 2.82e-99 296
Msa0641740 AT3G20880.1 76.048 167 40 0 110 276 238 404 1.54e-98 295
Msa0641740 AT1G13290.1 69.634 191 49 4 75 263 55 238 1.87e-95 284
Msa0641740 AT1G34790.1 63.184 201 66 2 76 268 85 285 6.05e-90 270
Msa0641740 AT1G34370.3 39.073 151 80 5 122 263 28 175 1.72e-25 103
Msa0641740 AT1G34370.2 39.073 151 80 5 122 263 238 385 9.00e-25 103
Msa0641740 AT1G34370.1 39.073 151 80 5 122 263 238 385 9.00e-25 103
Msa0641740 AT5G22890.1 35.583 163 96 5 104 259 195 355 1.65e-22 96.3
Msa0641740 AT5G03150.1 32.317 164 100 5 98 259 52 206 3.31e-20 90.9
Msa0641740 AT5G66730.1 35.461 141 81 4 120 259 53 184 9.32e-20 89.4
Msa0641740 AT1G55110.3 31.098 164 102 5 98 259 62 216 3.65e-19 87.4
Msa0641740 AT1G55110.1 31.098 164 102 5 98 259 62 216 3.65e-19 87.4
Msa0641740 AT1G55110.2 31.098 164 102 5 98 259 62 216 3.65e-19 87.4
Msa0641740 AT5G60470.1 34.161 161 90 5 107 259 36 188 6.28e-19 86.7
Msa0641740 AT5G60470.3 35.971 139 80 4 122 259 63 193 9.28e-19 86.3
Msa0641740 AT5G60470.2 35.971 139 80 4 122 259 67 197 9.69e-19 86.3
Msa0641740 AT5G44160.1 29.282 181 115 5 83 259 18 189 1.91e-18 85.5
Msa0641740 AT1G14580.1 31.902 163 99 5 99 259 53 205 2.42e-18 85.1
Msa0641740 AT1G14580.2 31.902 163 99 5 99 259 53 205 2.42e-18 85.1
Msa0641740 AT1G14580.3 31.902 163 99 5 99 259 67 219 2.48e-18 85.1
Msa0641740 AT3G45260.2 35.971 139 80 4 122 259 62 192 2.65e-18 85.1
Msa0641740 AT3G45260.1 35.971 139 80 4 122 259 62 192 2.65e-18 85.1
Msa0641740 AT2G02080.1 30.864 162 102 4 99 259 54 206 2.86e-18 85.1
Msa0641740 AT2G02080.4 30.864 162 102 4 99 259 54 206 2.86e-18 85.1
Msa0641740 AT2G02080.5 30.864 162 102 4 99 259 54 206 2.86e-18 85.1
Msa0641740 AT2G02080.3 30.864 162 102 4 99 259 54 206 2.86e-18 85.1
Msa0641740 AT2G02070.2 31.481 162 101 4 99 259 52 204 3.13e-18 85.1
Msa0641740 AT2G02070.1 31.481 162 101 4 99 259 52 204 3.13e-18 85.1
Msa0641740 AT3G13810.4 30.864 162 103 4 99 259 70 223 9.19e-18 83.6
Msa0641740 AT3G13810.1 30.864 162 103 4 99 259 70 223 9.19e-18 83.6
Msa0641740 AT3G13810.5 30.864 162 103 4 99 259 65 218 9.54e-18 83.6
Msa0641740 AT3G13810.6 30.864 162 103 4 99 259 51 204 9.64e-18 83.6
Msa0641740 AT1G03840.1 32.515 163 100 5 98 259 40 193 9.78e-18 83.6
Msa0641740 AT3G50700.1 33.562 146 87 4 115 259 50 186 1.19e-17 83.2
Msa0641740 AT2G02080.6 35.821 134 76 4 127 259 5 129 1.23e-17 82.8
Msa0641740 AT2G02080.2 35.821 134 76 4 127 259 5 129 1.23e-17 82.8
Msa0641740 AT3G13810.3 33.562 146 88 4 115 259 73 210 1.29e-17 83.2
Msa0641740 AT3G13810.2 33.562 146 88 4 115 259 87 224 1.31e-17 83.2
Msa0641740 AT4G02670.2 34.247 146 87 4 115 259 71 208 2.43e-17 82.0
Msa0641740 AT4G02670.1 34.247 146 87 4 115 259 69 206 2.45e-17 82.0
Msa0641740 AT1G03840.2 34.247 146 86 5 115 259 55 191 2.63e-17 82.0
Msa0641740 AT5G44160.2 33.094 139 83 4 122 259 21 150 3.26e-17 81.6
Msa0641740 AT1G25250.1 28.986 138 90 4 120 255 31 162 1.62e-12 67.4
Msa0641740 AT1G68130.1 30.435 138 87 4 120 255 62 192 1.63e-12 67.8
Msa0641740 AT1G25250.3 28.986 138 90 4 120 255 54 185 2.45e-12 67.0
Msa0641740 AT2G01940.1 30.216 139 86 5 120 255 65 195 2.41e-11 64.3

Find 76 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAAATTAATAATTAATT+TGG 0.048160 4_3:-42510508 None:intergenic
AAAGATCATATTAGGTCTTT+TGG 0.190747 4_3:+42514382 Msa0641740:CDS
GAAAACTTTGCACTCAAAAT+AGG 0.197503 4_3:-42510719 None:intergenic
CCATGCTACTGTTGTGTTCA+AGG 0.271424 4_3:+42514142 Msa0641740:CDS
GGGGAGAAGGGATGTGTTAC+TGG 0.300441 4_3:+42514451 Msa0641740:CDS
CTTACATACGGAAATCCTTT+AGG 0.303136 4_3:-42514963 None:intergenic
AAACTTCTTCTCATGAAGAT+AGG 0.335592 4_3:-42510843 None:intergenic
GATCTCTCAAAGATCATATT+AGG 0.336377 4_3:+42514374 Msa0641740:CDS
GAGACTGTGGCTTTGCATAT+TGG 0.342224 4_3:+42510800 Msa0641740:CDS
ATAAAATTAATAATTAATTT+GGG 0.347784 4_3:-42510507 None:intergenic
TATGATTGAGAGGAATTAGA+TGG 0.353434 4_3:-42510635 None:intergenic
ACTCATCAAGGTAAAGAGTA+TGG 0.382063 4_3:+42510562 Msa0641740:exon
CATGTTGTTATACCTATTGA+AGG 0.383480 4_3:-42510987 None:intergenic
AACTCAAAACCCTCAATTTG+TGG 0.388963 4_3:-42510764 None:intergenic
TCTTTCAAAGTCTTAGCTCT+TGG 0.410923 4_3:-42514187 None:intergenic
CATTTGCTGTCAAAGGTGAT+TGG 0.415877 4_3:+42514284 Msa0641740:CDS
TGTGTGCCTCTTAGTGAGTC+TGG 0.423624 4_3:-42514097 None:intergenic
AAAAGAATTGTGGCAAGTTA+TGG 0.431308 4_3:+42514317 Msa0641740:CDS
ACTCCTGCTCAGATCCTTGT+TGG 0.433316 4_3:+42510929 Msa0641740:CDS
TATGCAACAAAACCTTCAAT+AGG 0.434246 4_3:+42510975 Msa0641740:CDS
AGACAATTAAAATTTAGAAA+TGG 0.446221 4_3:-42514517 None:intergenic
GCGTGAAGTGCCACAAATTG+AGG 0.454416 4_3:+42510754 Msa0641740:CDS
GGTAAAGAGTATGGCTATGA+TGG 0.462532 4_3:+42510571 Msa0641740:exon
TTATCGCCTTCATTACCTAA+AGG 0.468059 4_3:+42514948 Msa0641740:three_prime_UTR
GATTGATGATCAAGCTTTCG+AGG 0.470913 4_3:+42514429 Msa0641740:CDS
GAAACCAAGCACTTATATGA+TGG 0.481094 4_3:-42510539 None:intergenic
GAGTTGGTATCCAAAACCTT+TGG 0.485962 4_3:-42510910 None:intergenic
CCATTTATGTGTAGAAAATG+TGG 0.488125 4_3:+42514256 Msa0641740:CDS
GGTAGCCTTAGCATTGCAGC+TGG 0.491825 4_3:-42514121 None:intergenic
CGTGAAGTGCCACAAATTGA+GGG 0.493265 4_3:+42510755 Msa0641740:CDS
TCTGGTATGAAAACCATTGT+CGG 0.493824 4_3:+42515020 Msa0641740:three_prime_UTR
ATGAGCTATCATATCTATAG+AGG 0.497209 4_3:+42514787 Msa0641740:three_prime_UTR
CAAACCATCATATAAGTGCT+TGG 0.500864 4_3:+42510535 Msa0641740:five_prime_UTR
GGAAATCCTTTAGGTAATGA+AGG 0.509401 4_3:-42514954 None:intergenic
TTCATCTACTTCGCCACTTG+AGG 0.515892 4_3:-42514850 None:intergenic
AAGTTATGGTATTGCACTTG+TGG 0.518903 4_3:+42514331 Msa0641740:CDS
GTGCTTGGTTTCACTCATCA+AGG 0.520374 4_3:+42510550 Msa0641740:five_prime_UTR
TTTCTTCTTCTTCTTTAACA+TGG 0.521689 4_3:-42510868 None:intergenic
TTTCCATTAGATGCATATGT+GGG 0.526101 4_3:+42514048 Msa0641740:intron
TTGCTGTCAAAGGTGATTGG+AGG 0.526560 4_3:+42514287 Msa0641740:CDS
ATAAATACGGTTACCTCAAG+TGG 0.532759 4_3:+42514837 Msa0641740:three_prime_UTR
ACATTCCCACGTTCATGCCT+CGG 0.533300 4_3:-42514736 None:intergenic
CACAACCAGCTGCAATGCTA+AGG 0.533499 4_3:+42514116 Msa0641740:CDS
TGGTATCCAAAACCTTTGGA+AGG 0.554935 4_3:-42510906 None:intergenic
GGTCCAACAAGGATCTGAGC+AGG 0.564499 4_3:-42510932 None:intergenic
AGGACAATAATTTCATTGAG+TGG 0.566958 4_3:+42510606 Msa0641740:CDS
ATCACTACCCTCTAAGTGCT+CGG 0.569568 4_3:-42514766 None:intergenic
TCCATTAGATGCATATGTGG+GGG 0.571799 4_3:+42514050 Msa0641740:intron
ATTGATGATCAAGCTTTCGA+GGG 0.573728 4_3:+42514430 Msa0641740:CDS
ACAAGGATCTGAGCAGGAGT+TGG 0.574558 4_3:-42510926 None:intergenic
ATGTTAACAACACTTACATA+CGG 0.575136 4_3:-42514975 None:intergenic
AAAGGACCAGACTCACTAAG+AGG 0.575770 4_3:+42514091 Msa0641740:CDS
TTTCTTCTCATAGTAAAAGA+GGG 0.582376 4_3:+42514874 Msa0641740:three_prime_UTR
TATAATAATCTAGCCGACAA+TGG 0.594476 4_3:-42515033 None:intergenic
TTCCATTAGATGCATATGTG+GGG 0.605042 4_3:+42514049 Msa0641740:intron
CATTTATGTGTAGAAAATGT+GGG 0.610048 4_3:+42514257 Msa0641740:CDS
TTCTCATAGTAAAAGAGGGT+AGG 0.610282 4_3:+42514878 Msa0641740:three_prime_UTR
TTGTATAGTTTCATTTCGAG+TGG 0.612164 4_3:-42510690 None:intergenic
ACTCACTACAAAAGAAAACA+TGG 0.615968 4_3:+42514226 Msa0641740:CDS
TGAAGTTAGATATGATTGAG+AGG 0.617034 4_3:-42510645 None:intergenic
AAAGCTTGATCATCAATCGA+AGG 0.617239 4_3:-42514424 None:intergenic
CAAATTGCATAGGTCCAACA+AGG 0.619822 4_3:-42510943 None:intergenic
CAATAGGTATAACAACATGC+AGG 0.621278 4_3:+42510991 Msa0641740:CDS
ATGGAGCAAGCAAATTGCAT+AGG 0.622517 4_3:-42510953 None:intergenic
AGGACTCATGAAAAGAATTG+TGG 0.623632 4_3:+42514307 Msa0641740:CDS
GGGAAAACATTTGCTGTCAA+AGG 0.623807 4_3:+42514277 Msa0641740:CDS
CATGGATCTGAATTTAGGAA+AGG 0.631532 4_3:+42514073 Msa0641740:CDS
CATTCTCAATAATATTGCCG+AGG 0.632429 4_3:+42514719 Msa0641740:three_prime_UTR
TTTGCTACCGAGCACTTAGA+GGG 0.642647 4_3:+42514759 Msa0641740:three_prime_UTR
TTGATGATCAAGCTTTCGAG+GGG 0.658030 4_3:+42514431 Msa0641740:CDS
TATGATGGAGTGTGATGTAG+AGG 0.658485 4_3:+42510586 Msa0641740:CDS
CCTTGAACACAACAGTAGCA+TGG 0.671135 4_3:-42514142 None:intergenic
TTCACTACTCTTGTGCTCAG+CGG 0.676290 4_3:+42514691 Msa0641740:three_prime_UTR
ATATTGCCGAGGCATGAACG+TGG 0.690230 4_3:+42514730 Msa0641740:three_prime_UTR
TATTGCCGAGGCATGAACGT+GGG 0.691804 4_3:+42514731 Msa0641740:three_prime_UTR
TGATGATCAAGCTTTCGAGG+GGG 0.705674 4_3:+42514432 Msa0641740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTAATAATTAATTT+GGG - chr4_3:42510510-42510529 None:intergenic 0.0%
!! AATAAAATTAATAATTAATT+TGG - chr4_3:42510511-42510530 None:intergenic 0.0%
!! ATAATTAATTTAAATTAATA+AGG - chr4_3:42511364-42511383 None:intergenic 0.0%
!!! AATTTTAATTTTAATAAATA+CGG + chr4_3:42514824-42514843 Msa0641740:three_prime_UTR 0.0%
!! ATTCATGAAATTTAATTAAA+AGG - chr4_3:42511024-42511043 None:intergenic 10.0%
!! TAAATTAATAAGGTTAAAAT+TGG - chr4_3:42511354-42511373 None:intergenic 10.0%
!! TAGTTATTAATTATGAATAT+GGG - chr4_3:42511405-42511424 None:intergenic 10.0%
!! TATTGAATATAAAAACTATA+AGG + chr4_3:42512149-42512168 Msa0641740:intron 10.0%
!!! AACTGATTTTTTTAAATAAA+AGG - chr4_3:42512321-42512340 None:intergenic 10.0%
!!! GTTTTTTTTTTTTGTTATAT+CGG - chr4_3:42512451-42512470 None:intergenic 10.0%
!! CAAAAAAAAAAAACTATAAA+TGG + chr4_3:42512457-42512476 Msa0641740:intron 10.0%
!! ATATAAATACAAATATATGT+AGG + chr4_3:42513432-42513451 Msa0641740:intron 10.0%
!! AATTAATTAGTATAATCAAA+AGG - chr4_3:42513547-42513566 None:intergenic 10.0%
!!! ATGCATTTTTTTTTTTTTAT+GGG - chr4_3:42513969-42513988 None:intergenic 10.0%
!! CTACTAAAAAAAACTAAATT+AGG + chr4_3:42511154-42511173 Msa0641740:intron 15.0%
!! GTAGTTATTAATTATGAATA+TGG - chr4_3:42511406-42511425 None:intergenic 15.0%
!! ATCATGAAAAAAAGAAAAAA+GGG - chr4_3:42511531-42511550 None:intergenic 15.0%
!! AATCATGAAAAAAAGAAAAA+AGG - chr4_3:42511532-42511551 None:intergenic 15.0%
!! TCATAAATACATTTATCATT+TGG + chr4_3:42511730-42511749 Msa0641740:intron 15.0%
!! CATAAATACATTTATCATTT+GGG + chr4_3:42511731-42511750 Msa0641740:intron 15.0%
!! TAAATATAAAATGACGTAAA+AGG - chr4_3:42511848-42511867 None:intergenic 15.0%
!!! AAGGCAAATTTTAATTATAA+GGG + chr4_3:42512258-42512277 Msa0641740:intron 15.0%
!!! ATTTTAATTATAAGGGATTT+TGG + chr4_3:42512265-42512284 Msa0641740:intron 15.0%
!!! ATTTGAAGTAAACAAATTAA+GGG - chr4_3:42512746-42512765 None:intergenic 15.0%
!!! AATTTGAAGTAAACAAATTA+AGG - chr4_3:42512747-42512766 None:intergenic 15.0%
!!! ATATTCTCCTTTTTTTTTAT+AGG + chr4_3:42512874-42512893 Msa0641740:intron 15.0%
!!! TTCAAAAAGTTAATTTTTCA+TGG + chr4_3:42513064-42513083 Msa0641740:intron 15.0%
!!! TCAAAAAGTTAATTTTTCAT+GGG + chr4_3:42513065-42513084 Msa0641740:intron 15.0%
!! TTAATTGTATATATTATGAG+AGG + chr4_3:42513561-42513580 Msa0641740:intron 15.0%
!!! ACTTGAAGATTATTTTTTTA+TGG + chr4_3:42513742-42513761 Msa0641740:intron 15.0%
!!! CATGCATTTTTTTTTTTTTA+TGG - chr4_3:42513970-42513989 None:intergenic 15.0%
!! TGGAAAAATATTTATTAAGT+TGG - chr4_3:42514034-42514053 None:intergenic 15.0%
!! AGACAATTAAAATTTAGAAA+TGG - chr4_3:42514520-42514539 None:intergenic 15.0%
!!! TAGTTTTCCATTTTTTTCAT+GGG - chr4_3:42511124-42511143 None:intergenic 20.0%
!!! ATAGTTTTCCATTTTTTTCA+TGG - chr4_3:42511125-42511144 None:intergenic 20.0%
!!! ATCTCTAATTTTTTCACTAA+GGG - chr4_3:42512035-42512054 None:intergenic 20.0%
!!! TATCTCTAATTTTTTCACTA+AGG - chr4_3:42512036-42512055 None:intergenic 20.0%
!!! CAAGGCAAATTTTAATTATA+AGG + chr4_3:42512257-42512276 Msa0641740:intron 20.0%
!! AAAAAAAAACTATAAATGGG+AGG + chr4_3:42512461-42512480 Msa0641740:intron 20.0%
!! CAAATAGCCTATAAAAAAAA+AGG - chr4_3:42512884-42512903 None:intergenic 20.0%
!! ATATTGCAATTGTATTATGT+AGG - chr4_3:42512930-42512949 None:intergenic 20.0%
!!! ATTAACTTTTTGAAAGTGAA+GGG - chr4_3:42513058-42513077 None:intergenic 20.0%
!!! AATTAACTTTTTGAAAGTGA+AGG - chr4_3:42513059-42513078 None:intergenic 20.0%
!!! TATTTGTGTTAGAACTTTTT+TGG + chr4_3:42513143-42513162 Msa0641740:intron 20.0%
!!! ATTTGTGTTAGAACTTTTTT+GGG + chr4_3:42513144-42513163 Msa0641740:intron 20.0%
!!! ACATTTTTCATATCAATTTC+CGG - chr4_3:42513266-42513285 None:intergenic 20.0%
!!! TGAAGATCAATTTTATTTCT+TGG + chr4_3:42513323-42513342 Msa0641740:intron 20.0%
!! AAGAAAACAAAACAAAACTT+TGG + chr4_3:42513516-42513535 Msa0641740:intron 20.0%
!!! TTGTTTTATTTCAACATTCA+TGG + chr4_3:42513604-42513623 Msa0641740:intron 20.0%
!!! TGTTTTATTTCAACATTCAT+GGG + chr4_3:42513605-42513624 Msa0641740:intron 20.0%
!! GGAAAGATTAACAAAATTAT+TGG + chr4_3:42513678-42513697 Msa0641740:intron 20.0%
!! AAAATTATTGGCAACAATTA+GGG + chr4_3:42513690-42513709 Msa0641740:intron 20.0%
!!! TTATGGTCTAATTTAAAGTA+AGG + chr4_3:42513759-42513778 Msa0641740:intron 20.0%
!!! TATGGTCTAATTTAAAGTAA+GGG + chr4_3:42513760-42513779 Msa0641740:intron 20.0%
! TTTCTTCTTCTTCTTTAACA+TGG - chr4_3:42510871-42510890 None:intergenic 25.0%
!! TTTTTCTTTACAAGTAACTG+AGG - chr4_3:42511091-42511110 None:intergenic 25.0%
! CAGTTACTTGTAAAGAAAAA+TGG + chr4_3:42511091-42511110 Msa0641740:intron 25.0%
! AAAAACTCCCATGAAAAAAA+TGG + chr4_3:42511114-42511133 Msa0641740:intron 25.0%
! TCATAATTAATAACTACCCA+CGG + chr4_3:42511409-42511428 Msa0641740:intron 25.0%
! GTTAACAAAATATAAACCGT+GGG - chr4_3:42511428-42511447 None:intergenic 25.0%
! TGTTAACAAAATATAAACCG+TGG - chr4_3:42511429-42511448 None:intergenic 25.0%
! TTCGTAAGTAAATTTAGTGA+GGG - chr4_3:42512071-42512090 None:intergenic 25.0%
!! AAAAGGTATAGTTGAAAGAA+AGG - chr4_3:42512304-42512323 None:intergenic 25.0%
! CTTTGTGTTTGTAAAATTCA+TGG - chr4_3:42512843-42512862 None:intergenic 25.0%
!! CATTTTTCATATCAATTTCC+GGG - chr4_3:42513265-42513284 None:intergenic 25.0%
!!! ACGTTTTAAAGACTTAGTAA+TGG - chr4_3:42513297-42513316 None:intergenic 25.0%
! ATACAAATATATGTAGGACA+TGG + chr4_3:42513438-42513457 Msa0641740:intron 25.0%
! TACAAATATATGTAGGACAT+GGG + chr4_3:42513439-42513458 Msa0641740:intron 25.0%
! CAAAATTATTGGCAACAATT+AGG + chr4_3:42513689-42513708 Msa0641740:intron 25.0%
! AAATTATTGGCAACAATTAG+GGG + chr4_3:42513691-42513710 Msa0641740:intron 25.0%
! TACAACAATTTCTTCTCTTA+AGG + chr4_3:42513870-42513889 Msa0641740:intron 25.0%
! TTTCTTCTCTTAAGGTTATA+TGG + chr4_3:42513878-42513897 Msa0641740:intron 25.0%
! CATTTATGTGTAGAAAATGT+GGG + chr4_3:42514257-42514276 Msa0641740:CDS 25.0%
!! AAAGATCATATTAGGTCTTT+TGG + chr4_3:42514382-42514401 Msa0641740:CDS 25.0%
!! TTTTCTTCTCATAGTAAAAG+AGG + chr4_3:42514873-42514892 Msa0641740:three_prime_UTR 25.0%
! TTTCTTCTCATAGTAAAAGA+GGG + chr4_3:42514874-42514893 Msa0641740:three_prime_UTR 25.0%
!! TAAATTTTCTCCATTGAAGA+GGG - chr4_3:42514931-42514950 None:intergenic 25.0%
!! ATAAATTTTCTCCATTGAAG+AGG - chr4_3:42514932-42514951 None:intergenic 25.0%
! ATGTTAACAACACTTACATA+CGG - chr4_3:42514978-42514997 None:intergenic 25.0%
!! GTGAACTTTGATAAATTTTC+TGG + chr4_3:42515002-42515021 Msa0641740:three_prime_UTR 25.0%
AGGACAATAATTTCATTGAG+TGG + chr4_3:42510606-42510625 Msa0641740:CDS 30.0%
TATGATTGAGAGGAATTAGA+TGG - chr4_3:42510638-42510657 None:intergenic 30.0%
TGAAGTTAGATATGATTGAG+AGG - chr4_3:42510648-42510667 None:intergenic 30.0%
TTGTATAGTTTCATTTCGAG+TGG - chr4_3:42510693-42510712 None:intergenic 30.0%
GAAAACTTTGCACTCAAAAT+AGG - chr4_3:42510722-42510741 None:intergenic 30.0%
! TTTGAGTGCAAAGTTTTCAA+AGG + chr4_3:42510724-42510743 Msa0641740:CDS 30.0%
AAACTTCTTCTCATGAAGAT+AGG - chr4_3:42510846-42510865 None:intergenic 30.0%
!!! CTTTGGAAGGTTTTTTTAGA+AGG - chr4_3:42510896-42510915 None:intergenic 30.0%
! CTTCTAAAAAAACCTTCCAA+AGG + chr4_3:42510894-42510913 Msa0641740:CDS 30.0%
! AAAAAACCTTCCAAAGGTTT+TGG + chr4_3:42510900-42510919 Msa0641740:CDS 30.0%
!!! ATTGAAGGTTTTGTTGCATA+TGG - chr4_3:42510975-42510994 None:intergenic 30.0%
TATGCAACAAAACCTTCAAT+AGG + chr4_3:42510975-42510994 Msa0641740:CDS 30.0%
CATGTTGTTATACCTATTGA+AGG - chr4_3:42510990-42511009 None:intergenic 30.0%
! TAAGCTAGCTTATAGTTTGT+TGG + chr4_3:42511196-42511215 Msa0641740:intron 30.0%
TTGATAGAATAAGACGTGTT+TGG + chr4_3:42511238-42511257 Msa0641740:intron 30.0%
AAAAAAAGAAAAAAGGGCAG+TGG - chr4_3:42511525-42511544 None:intergenic 30.0%
CTTCGTAAGTAAATTTAGTG+AGG - chr4_3:42512072-42512091 None:intergenic 30.0%
CTCACTAAATTTACTTACGA+AGG + chr4_3:42512070-42512089 Msa0641740:intron 30.0%
TAAAAACTATAAGGTCTAGC+AGG + chr4_3:42512158-42512177 Msa0641740:intron 30.0%
!!! AAGTTCCTTCATTTTTTGAG+TGG + chr4_3:42512234-42512253 Msa0641740:intron 30.0%
ATAGATTAGCACCTACATTT+AGG + chr4_3:42512770-42512789 Msa0641740:intron 30.0%
AAAGGAGAATATCAAATTGC+TGG - chr4_3:42512866-42512885 None:intergenic 30.0%
AGACAAGAAGAGAAAAGTTA+GGG - chr4_3:42512971-42512990 None:intergenic 30.0%
AAGACAAGAAGAGAAAAGTT+AGG - chr4_3:42512972-42512991 None:intergenic 30.0%
!! TTTGTGTGTTGGTTAGTTAA+GGG + chr4_3:42513197-42513216 Msa0641740:intron 30.0%
!! AGAAGCACAATATTTTACAC+TGG + chr4_3:42513221-42513240 Msa0641740:intron 30.0%
ACAAATATATGTAGGACATG+GGG + chr4_3:42513440-42513459 Msa0641740:intron 30.0%
! GGCATAGTAATTTGTCAAAA+GGG + chr4_3:42513461-42513480 Msa0641740:intron 30.0%
! GCATAGTAATTTGTCAAAAG+GGG + chr4_3:42513462-42513481 Msa0641740:intron 30.0%
! CATAGTAATTTGTCAAAAGG+GGG + chr4_3:42513463-42513482 Msa0641740:intron 30.0%
TTTGTTAATCTTTCCCTGAT+GGG - chr4_3:42513673-42513692 None:intergenic 30.0%
! TTTTGTTAATCTTTCCCTGA+TGG - chr4_3:42513674-42513693 None:intergenic 30.0%
TAAGCTAGGTCAAATAATTC+AGG + chr4_3:42513714-42513733 Msa0641740:intron 30.0%
! TCATCTTTGATTTCTTCATG+AGG - chr4_3:42513923-42513942 None:intergenic 30.0%
! TTTTCCATTAGATGCATATG+TGG + chr4_3:42514047-42514066 Msa0641740:intron 30.0%
TTTCCATTAGATGCATATGT+GGG + chr4_3:42514048-42514067 Msa0641740:intron 30.0%
! GTTTTCTTTTGTAGTGAGTT+TGG - chr4_3:42514225-42514244 None:intergenic 30.0%
ACTCACTACAAAAGAAAACA+TGG + chr4_3:42514226-42514245 Msa0641740:CDS 30.0%
! CCACATTTTCTACACATAAA+TGG - chr4_3:42514259-42514278 None:intergenic 30.0%
CCATTTATGTGTAGAAAATG+TGG + chr4_3:42514256-42514275 Msa0641740:CDS 30.0%
AAAAGAATTGTGGCAAGTTA+TGG + chr4_3:42514317-42514336 Msa0641740:CDS 30.0%
GATCTCTCAAAGATCATATT+AGG + chr4_3:42514374-42514393 Msa0641740:CDS 30.0%
!! CATATTAGGTCTTTTGGAAA+AGG + chr4_3:42514388-42514407 Msa0641740:CDS 30.0%
ATGAGCTATCATATCTATAG+AGG + chr4_3:42514787-42514806 Msa0641740:three_prime_UTR 30.0%
!! TTTTTGTTATCCCTCTTCAA+TGG + chr4_3:42514918-42514937 Msa0641740:three_prime_UTR 30.0%
CAAACCATCATATAAGTGCT+TGG + chr4_3:42510535-42510554 Msa0641740:five_prime_UTR 35.0%
GAAACCAAGCACTTATATGA+TGG - chr4_3:42510542-42510561 None:intergenic 35.0%
ACTCATCAAGGTAAAGAGTA+TGG + chr4_3:42510562-42510581 Msa0641740:exon 35.0%
AACTCAAAACCCTCAATTTG+TGG - chr4_3:42510767-42510786 None:intergenic 35.0%
CAAAGAAGAAAAAGAGACTG+TGG + chr4_3:42510787-42510806 Msa0641740:CDS 35.0%
!! AGATAGGTTTTAGTGTCATG+AGG - chr4_3:42510830-42510849 None:intergenic 35.0%
CAATAGGTATAACAACATGC+AGG + chr4_3:42510991-42511010 Msa0641740:CDS 35.0%
TTCAAAAAACGCTAAGCTAG+TGG - chr4_3:42511277-42511296 None:intergenic 35.0%
CGAGCAAGTCACAAAAAATA+TGG - chr4_3:42511494-42511513 None:intergenic 35.0%
GGTAAAATTAGCTGTTCAAG+TGG - chr4_3:42511875-42511894 None:intergenic 35.0%
!! TTTTTCACTAAGGGTGTGTT+TGG - chr4_3:42512026-42512045 None:intergenic 35.0%
TATGGTGATCTCTCGTTATT+GGG - chr4_3:42512509-42512528 None:intergenic 35.0%
TTATGGTGATCTCTCGTTAT+TGG - chr4_3:42512510-42512529 None:intergenic 35.0%
ATTTCTCTCCATCTATCTCT+CGG - chr4_3:42512539-42512558 None:intergenic 35.0%
AGAGATAGATGGAGAGAAAT+CGG + chr4_3:42512539-42512558 Msa0641740:intron 35.0%
AAGAAGAGAAAAGTTAGGGA+AGG - chr4_3:42512967-42512986 None:intergenic 35.0%
! ATGGGTTATGATCACTTCAA+AGG + chr4_3:42513083-42513102 Msa0641740:intron 35.0%
TGGGTTATGATCACTTCAAA+GGG + chr4_3:42513084-42513103 Msa0641740:intron 35.0%
ACAAAGCAGACAATATTCCA+GGG - chr4_3:42513182-42513201 None:intergenic 35.0%
ATATTGTCTGCTTTGTGTGT+TGG + chr4_3:42513186-42513205 Msa0641740:intron 35.0%
!! CTTTGTGTGTTGGTTAGTTA+AGG + chr4_3:42513196-42513215 Msa0641740:intron 35.0%
! GGGCATAGTAATTTGTCAAA+AGG + chr4_3:42513460-42513479 Msa0641740:intron 35.0%
TTGTTAATCTTTCCCTGATG+GGG - chr4_3:42513672-42513691 None:intergenic 35.0%
TTCCATTAGATGCATATGTG+GGG + chr4_3:42514049-42514068 Msa0641740:intron 35.0%
CATGGATCTGAATTTAGGAA+AGG + chr4_3:42514073-42514092 Msa0641740:CDS 35.0%
! TCTTTCAAAGTCTTAGCTCT+TGG - chr4_3:42514190-42514209 None:intergenic 35.0%
AGGACTCATGAAAAGAATTG+TGG + chr4_3:42514307-42514326 Msa0641740:CDS 35.0%
AAGTTATGGTATTGCACTTG+TGG + chr4_3:42514331-42514350 Msa0641740:CDS 35.0%
AAAGCTTGATCATCAATCGA+AGG - chr4_3:42514427-42514446 None:intergenic 35.0%
! ATTGATGATCAAGCTTTCGA+GGG + chr4_3:42514430-42514449 Msa0641740:CDS 35.0%
CATTCTCAATAATATTGCCG+AGG + chr4_3:42514719-42514738 Msa0641740:three_prime_UTR 35.0%
ATAAATACGGTTACCTCAAG+TGG + chr4_3:42514837-42514856 Msa0641740:three_prime_UTR 35.0%
TTCTCATAGTAAAAGAGGGT+AGG + chr4_3:42514878-42514897 Msa0641740:three_prime_UTR 35.0%
TTATCGCCTTCATTACCTAA+AGG + chr4_3:42514948-42514967 Msa0641740:three_prime_UTR 35.0%
GGAAATCCTTTAGGTAATGA+AGG - chr4_3:42514957-42514976 None:intergenic 35.0%
CTTACATACGGAAATCCTTT+AGG - chr4_3:42514966-42514985 None:intergenic 35.0%
! GGTAAAGAGTATGGCTATGA+TGG + chr4_3:42510571-42510590 Msa0641740:exon 40.0%
! TATGATGGAGTGTGATGTAG+AGG + chr4_3:42510586-42510605 Msa0641740:CDS 40.0%
TGGTATCCAAAACCTTTGGA+AGG - chr4_3:42510909-42510928 None:intergenic 40.0%
!! GAGTTGGTATCCAAAACCTT+TGG - chr4_3:42510913-42510932 None:intergenic 40.0%
CAAATTGCATAGGTCCAACA+AGG - chr4_3:42510946-42510965 None:intergenic 40.0%
ATGGAGCAAGCAAATTGCAT+AGG - chr4_3:42510956-42510975 None:intergenic 40.0%
!! TTTGTGACTTGCTCGTAGAT+TGG + chr4_3:42511499-42511518 Msa0641740:intron 40.0%
CCTTGCCACTCAAAAAATGA+AGG - chr4_3:42512242-42512261 None:intergenic 40.0%
!!! CCTTCATTTTTTGAGTGGCA+AGG + chr4_3:42512239-42512258 Msa0641740:intron 40.0%
! CTCGTTATTGGGACTCTTTT+GGG - chr4_3:42512498-42512517 None:intergenic 40.0%
! TCTCGTTATTGGGACTCTTT+TGG - chr4_3:42512499-42512518 None:intergenic 40.0%
!! CTATCTCTCGGTGTTTGTTA+TGG - chr4_3:42512527-42512546 None:intergenic 40.0%
AACAAACACCGAGAGATAGA+TGG + chr4_3:42512528-42512547 Msa0641740:intron 40.0%
ATAGATGGAGAGAAATCGGA+TGG + chr4_3:42512543-42512562 Msa0641740:intron 40.0%
! CTGATGCTCCTTTTATGAGT+GGG - chr4_3:42512670-42512689 None:intergenic 40.0%
! ACTGATGCTCCTTTTATGAG+TGG - chr4_3:42512671-42512690 None:intergenic 40.0%
TGTCAATGAAGTTCTCGTCT+TGG - chr4_3:42512722-42512741 None:intergenic 40.0%
AGCACCTACATTTAGGCATA+CGG + chr4_3:42512777-42512796 Msa0641740:intron 40.0%
TTGTCCGTATGCCTAAATGT+AGG - chr4_3:42512784-42512803 None:intergenic 40.0%
AAAGTGAAGGGAATGCTAGA+GGG - chr4_3:42513046-42513065 None:intergenic 40.0%
!! TTGGGTTGAAAATTAACCCC+TGG + chr4_3:42513162-42513181 Msa0641740:intron 40.0%
CAAAGCAGACAATATTCCAG+GGG - chr4_3:42513181-42513200 None:intergenic 40.0%
CACAAAGCAGACAATATTCC+AGG - chr4_3:42513183-42513202 None:intergenic 40.0%
CTAAAAATAGAGCTAGTGCC+CGG + chr4_3:42513244-42513263 Msa0641740:intron 40.0%
TTTCTACTTAACTGCGAGAG+AGG + chr4_3:42513374-42513393 Msa0641740:intron 40.0%
TTCTACTTAACTGCGAGAGA+GGG + chr4_3:42513375-42513394 Msa0641740:intron 40.0%
! GTAATTTGTCAAAAGGGGGT+AGG + chr4_3:42513467-42513486 Msa0641740:intron 40.0%
TCCATTAGATGCATATGTGG+GGG + chr4_3:42514050-42514069 Msa0641740:intron 40.0%
!! GGGAAAACATTTGCTGTCAA+AGG + chr4_3:42514277-42514296 Msa0641740:CDS 40.0%
!! CATTTGCTGTCAAAGGTGAT+TGG + chr4_3:42514284-42514303 Msa0641740:CDS 40.0%
! GATTGATGATCAAGCTTTCG+AGG + chr4_3:42514429-42514448 Msa0641740:CDS 40.0%
! TTGATGATCAAGCTTTCGAG+GGG + chr4_3:42514431-42514450 Msa0641740:CDS 40.0%
GTGCTTGGTTTCACTCATCA+AGG + chr4_3:42510550-42510569 Msa0641740:five_prime_UTR 45.0%
! CGTGAAGTGCCACAAATTGA+GGG + chr4_3:42510755-42510774 Msa0641740:CDS 45.0%
! GAGACTGTGGCTTTGCATAT+TGG + chr4_3:42510800-42510819 Msa0641740:CDS 45.0%
CTGATAGCTGATAAGCTAGC+TGG - chr4_3:42511982-42512001 None:intergenic 45.0%
ACTATAAGGTCTAGCAGGAG+AGG + chr4_3:42512163-42512182 Msa0641740:intron 45.0%
CTATAAGGTCTAGCAGGAGA+GGG + chr4_3:42512164-42512183 Msa0641740:intron 45.0%
ATGGAGAGAAATCGGATGGA+GGG + chr4_3:42512547-42512566 Msa0641740:intron 45.0%
GCATACAGGATTGTTGGAGA+TGG - chr4_3:42512614-42512633 None:intergenic 45.0%
GATAGGGCATACAGGATTGT+TGG - chr4_3:42512620-42512639 None:intergenic 45.0%
CTCAAACTGATAGGGCATAC+AGG - chr4_3:42512628-42512647 None:intergenic 45.0%
ATGCCCTATCAGTTTGAGCA+CGG + chr4_3:42512630-42512649 Msa0641740:intron 45.0%
ATCCCGTGCTCAAACTGATA+GGG - chr4_3:42512636-42512655 None:intergenic 45.0%
TATCCCGTGCTCAAACTGAT+AGG - chr4_3:42512637-42512656 None:intergenic 45.0%
TATCAGTTTGAGCACGGGAT+AGG + chr4_3:42512636-42512655 Msa0641740:intron 45.0%
TTGCACCTCCCACTCATAAA+AGG + chr4_3:42512659-42512678 Msa0641740:intron 45.0%
! ATGCTCCTTTTATGAGTGGG+AGG - chr4_3:42512667-42512686 None:intergenic 45.0%
TCGTCTTGGAAACGACTCAT+TGG - chr4_3:42512708-42512727 None:intergenic 45.0%
TCGAGCTAGCTATAGCTAGA+TGG + chr4_3:42513010-42513029 Msa0641740:intron 45.0%
GAAAGTGAAGGGAATGCTAG+AGG - chr4_3:42513047-42513066 None:intergenic 45.0%
GTGTAGGACATGTAACATCG+AGG + chr4_3:42513489-42513508 Msa0641740:intron 45.0%
TTGACTTATCCTACCCCATC+AGG + chr4_3:42513656-42513675 Msa0641740:intron 45.0%
TGACTTATCCTACCCCATCA+GGG + chr4_3:42513657-42513676 Msa0641740:intron 45.0%
TAATCTTTCCCTGATGGGGT+AGG - chr4_3:42513668-42513687 None:intergenic 45.0%
GCAACAATTAGGGGTAAGCT+AGG + chr4_3:42513700-42513719 Msa0641740:intron 45.0%
AAAGGACCAGACTCACTAAG+AGG + chr4_3:42514091-42514110 Msa0641740:CDS 45.0%
CCTTGAACACAACAGTAGCA+TGG - chr4_3:42514145-42514164 None:intergenic 45.0%
CCATGCTACTGTTGTGTTCA+AGG + chr4_3:42514142-42514161 Msa0641740:CDS 45.0%
TTGCTGTCAAAGGTGATTGG+AGG + chr4_3:42514287-42514306 Msa0641740:CDS 45.0%
TGATGATCAAGCTTTCGAGG+GGG + chr4_3:42514432-42514451 Msa0641740:CDS 45.0%
TTCACTACTCTTGTGCTCAG+CGG + chr4_3:42514691-42514710 Msa0641740:three_prime_UTR 45.0%
! TTTTGCTACCGAGCACTTAG+AGG + chr4_3:42514758-42514777 Msa0641740:three_prime_UTR 45.0%
TTTGCTACCGAGCACTTAGA+GGG + chr4_3:42514759-42514778 Msa0641740:three_prime_UTR 45.0%
ATCACTACCCTCTAAGTGCT+CGG - chr4_3:42514769-42514788 None:intergenic 45.0%
TTCATCTACTTCGCCACTTG+AGG - chr4_3:42514853-42514872 None:intergenic 45.0%
!! TTATTAAAATAAAAAATGTT+TGG - chr4_3:42511896-42511915 None:intergenic 5.0%
!! AAAAAAAAAAAACTATAAAT+GGG + chr4_3:42512458-42512477 Msa0641740:intron 5.0%
!!! ATTATAATTTATCTTTTTTT+AGG - chr4_3:42513809-42513828 None:intergenic 5.0%
! GCGTGAAGTGCCACAAATTG+AGG + chr4_3:42510754-42510773 Msa0641740:CDS 50.0%
ACAAGGATCTGAGCAGGAGT+TGG - chr4_3:42510929-42510948 None:intergenic 50.0%
ACTCCTGCTCAGATCCTTGT+TGG + chr4_3:42510929-42510948 Msa0641740:CDS 50.0%
CTGGTAGCTGAAAAGCTAGC+TGG - chr4_3:42511963-42511982 None:intergenic 50.0%
GATGGAGAGAAATCGGATGG+AGG + chr4_3:42512546-42512565 Msa0641740:intron 50.0%
TGGAGAGAAATCGGATGGAG+GGG + chr4_3:42512548-42512567 Msa0641740:intron 50.0%
GAGCAGACATAAGACCAACC+AGG + chr4_3:42512578-42512597 Msa0641740:intron 50.0%
TGCCCTATCAGTTTGAGCAC+GGG + chr4_3:42512631-42512650 Msa0641740:intron 50.0%
GAATGCTAGAGGGACACAAG+AGG - chr4_3:42513036-42513055 None:intergenic 50.0%
TGTCAAAAGGGGGTAGGTGT+AGG + chr4_3:42513473-42513492 Msa0641740:intron 50.0%
GCCCCCACATATGCATCTAA+TGG - chr4_3:42514054-42514073 None:intergenic 50.0%
TAGATGCATATGTGGGGGCA+TGG + chr4_3:42514055-42514074 Msa0641740:intron 50.0%
! GGGGGCATGGATCTGAATTT+AGG + chr4_3:42514068-42514087 Msa0641740:CDS 50.0%
TGTGTGCCTCTTAGTGAGTC+TGG - chr4_3:42514100-42514119 None:intergenic 50.0%
CACAACCAGCTGCAATGCTA+AGG + chr4_3:42514116-42514135 Msa0641740:CDS 50.0%
ATATTGCCGAGGCATGAACG+TGG + chr4_3:42514730-42514749 Msa0641740:three_prime_UTR 50.0%
TATTGCCGAGGCATGAACGT+GGG + chr4_3:42514731-42514750 Msa0641740:three_prime_UTR 50.0%
ACATTCCCACGTTCATGCCT+CGG - chr4_3:42514739-42514758 None:intergenic 50.0%
GGTCCAACAAGGATCTGAGC+AGG - chr4_3:42510935-42510954 None:intergenic 55.0%
ATGGATCACGATCGCCTGGT+TGG - chr4_3:42512595-42512614 None:intergenic 55.0%
! GGTAGCCTTAGCATTGCAGC+TGG - chr4_3:42514124-42514143 None:intergenic 55.0%
TCAAGCTTTCGAGGGGGAGA+AGG + chr4_3:42514438-42514457 Msa0641740:CDS 55.0%
CAAGCTTTCGAGGGGGAGAA+GGG + chr4_3:42514439-42514458 Msa0641740:CDS 55.0%
GGGGAGAAGGGATGTGTTAC+TGG + chr4_3:42514451-42514470 Msa0641740:CDS 55.0%
GGAGATGGATCACGATCGCC+TGG - chr4_3:42512599-42512618 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 42510470 42515042 42510470 ID=Msa0641740;Name=Msa0641740
chr4_3 mRNA 42510470 42515042 42510470 ID=Msa0641740-mRNA-1;Parent=Msa0641740;Name=Msa0641740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|1|2|538|292
chr4_3 exon 42510470 42511012 42510470 ID=Msa0641740-mRNA-1:exon:9605;Parent=Msa0641740-mRNA-1
chr4_3 exon 42514058 42515042 42514058 ID=Msa0641740-mRNA-1:exon:9606;Parent=Msa0641740-mRNA-1
chr4_3 five_prime_UTR 42510470 42510580 42510470 ID=Msa0641740-mRNA-1:five_prime_utr;Parent=Msa0641740-mRNA-1
chr4_3 CDS 42510581 42511012 42510581 ID=Msa0641740-mRNA-1:cds;Parent=Msa0641740-mRNA-1
chr4_3 CDS 42514058 42514504 42514058 ID=Msa0641740-mRNA-1:cds;Parent=Msa0641740-mRNA-1
chr4_3 three_prime_UTR 42514505 42515042 42514505 ID=Msa0641740-mRNA-1:three_prime_utr;Parent=Msa0641740-mRNA-1
Gene Sequence

>Msa0641740

ATGGCTATGATGGAGTGTGATGTAGAGGACAATAATTTCATTGAGTGGCTCAAACCATCTAATTCCTCTCAATCATATCTAACTTCATCATCATCATCTTCTTCTTCTACCACTCGAAATGAAACTATACAATTCTTTCCTATTTTGAGTGCAAAGTTTTCAAAGGATGAAGAGCGTGAAGTGCCACAAATTGAGGGTTTTGAGTTCAAAGAAGAAAAAGAGACTGTGGCTTTGCATATTGGATTACCTCATGACACTAAAACCTATCTTCATGAGAAGAAGTTTTTCCATGTTAAAGAAGAAGAAGAAAAGCCTTCTAAAAAAACCTTCCAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAATTTGCTTGCTCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACCAGACTCACTAAGAGGCACACAACCAGCTGCAATGCTAAGGCTACCATGCTACTGTTGTGTTCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGACTTTGAAAGACTTTAGAACTCTCCAAACTCACTACAAAAGAAAACATGGAACAAAACCATTTATGTGTAGAAAATGTGGGAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGGTCTTTTGGAAAAGGTCATCGTCGTCTTCCTTCGATTGATGATCAAGCTTTCGAGGGGGAGAAGGGATGTGTTACTGGCTCTGAAGAAGATGAATTTGCTTGTACATGA
Protein sequence

>Msa0641740

MAMMECDVEDNNFIEWLKPSNSSQSYLTSSSSSSSSTTRNETIQFFPILSAKFSKDEEREVPQIEGFEFKEEKETVALHIGLPHDTKTYLHEKKFFHVKEEEEKPSKKTFQRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKTLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLPSIDDQAFEGEKGCVTGSEEDEFACT*