AlfalfaGEDB | Msa0641740

M. sativa cultivar zhongmu-4 / Msa0641740

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641740	XP_024636648.1	90.847	295	24	1	1	292	1	295	3.41e-171	485

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641740	sp\|Q9SGD1\|ZWIP3_ARATH	52.888	329	95	7	9	282	12	335	2.99e-107	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0641740	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011930	Msa0641740	0.832438	9.452744e-56	-8.615850e-47
Msa0108390	Msa0641740	0.821255	4.448793e-53	-8.615850e-47
Msa0241140	Msa0641740	0.809641	1.711564e-50	-8.615850e-47
Msa0267920	Msa0641740	0.800102	1.687004e-48	-8.615850e-47
Msa0365100	Msa0641740	0.805160	1.526689e-49	-8.615850e-47
Msa0367870	Msa0641740	0.802275	6.060731e-49	-8.615850e-47
Msa0403660	Msa0641740	0.822468	2.331669e-53	-8.615850e-47
Msa0601430	Msa0641740	0.817248	3.638092e-52	-8.615850e-47
Msa0641740	Msa0721280	0.807421	5.095972e-50	-8.615850e-47
Msa0641740	Msa0944200	0.801367	9.311689e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641740	MtrunA17_Chr4g0026521	90.847	295	24	1	1	292	1	295	3.13e-175	485
Msa0641740	MtrunA17_Chr2g0321291	68.404	307	71	9	5	290	6	307	2.16e-132	377
Msa0641740	MtrunA17_Chr2g0328921	63.136	236	79	2	36	264	53	287	6.10e-108	316
Msa0641740	MtrunA17_Chr8g0352011	65.611	221	62	4	72	279	110	329	3.29e-103	305
Msa0641740	MtrunA17_Chr1g0173841	60.558	251	69	6	64	287	137	384	1.24e-102	305
Msa0641740	MtrunA17_Chr7g0258011	54.122	279	85	5	43	290	73	339	1.74e-102	303
Msa0641740	MtrunA17_Chr5g0422571	64.055	217	65	4	75	288	65	271	7.96e-101	297
Msa0641740	MtrunA17_Chr4g0053341	59.375	224	81	2	43	263	6	222	2.66e-95	280
Msa0641740	MtrunA17_Chr1g0198651	70.391	179	48	3	104	278	90	267	4.50e-95	282
Msa0641740	MtrunA17_Chr1g0200421	37.805	164	90	6	122	277	245	404	4.43e-25	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641740	AT1G08290.1	52.888	329	95	7	9	282	12	335	3.04e-108	318
Msa0641740	AT1G51220.1	51.056	284	108	4	11	263	30	313	1.13e-99	296
Msa0641740	AT3G57670.1	82.895	152	26	0	112	263	201	352	2.82e-99	296
Msa0641740	AT3G20880.1	76.048	167	40	0	110	276	238	404	1.54e-98	295
Msa0641740	AT1G13290.1	69.634	191	49	4	75	263	55	238	1.87e-95	284
Msa0641740	AT1G34790.1	63.184	201	66	2	76	268	85	285	6.05e-90	270
Msa0641740	AT1G34370.3	39.073	151	80	5	122	263	28	175	1.72e-25	103
Msa0641740	AT1G34370.2	39.073	151	80	5	122	263	238	385	9.00e-25	103
Msa0641740	AT1G34370.1	39.073	151	80	5	122	263	238	385	9.00e-25	103
Msa0641740	AT5G22890.1	35.583	163	96	5	104	259	195	355	1.65e-22	96.3

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Find 76 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGTGGCAAGTTA+TGG	0.431308	4_3:+42514317	Msa0641740:CDS
AAACTTCTTCTCATGAAGAT+AGG	0.335592	4_3:-42510843	None:intergenic
AAAGATCATATTAGGTCTTT+TGG	0.190747	4_3:+42514382	Msa0641740:CDS
AAAGCTTGATCATCAATCGA+AGG	0.617239	4_3:-42514424	None:intergenic
AAAGGACCAGACTCACTAAG+AGG	0.575770	4_3:+42514091	Msa0641740:CDS
AACTCAAAACCCTCAATTTG+TGG	0.388963	4_3:-42510764	None:intergenic
AAGTTATGGTATTGCACTTG+TGG	0.518903	4_3:+42514331	Msa0641740:CDS
AATAAAATTAATAATTAATT+TGG	0.048160	4_3:-42510508	None:intergenic
ACAAGGATCTGAGCAGGAGT+TGG	0.574558	4_3:-42510926	None:intergenic
ACATTCCCACGTTCATGCCT+CGG	0.533300	4_3:-42514736	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGACAATAATTTCATTGAG+TGG	+	chr4_3:42510606-42510625	Msa0641740:CDS	30.0%
TATGATTGAGAGGAATTAGA+TGG	-	chr4_3:42510638-42510657	None:intergenic	30.0%
TGAAGTTAGATATGATTGAG+AGG	-	chr4_3:42510648-42510667	None:intergenic	30.0%
TTGTATAGTTTCATTTCGAG+TGG	-	chr4_3:42510693-42510712	None:intergenic	30.0%
GAAAACTTTGCACTCAAAAT+AGG	-	chr4_3:42510722-42510741	None:intergenic	30.0%
AAACTTCTTCTCATGAAGAT+AGG	-	chr4_3:42510846-42510865	None:intergenic	30.0%
TATGCAACAAAACCTTCAAT+AGG	+	chr4_3:42510975-42510994	Msa0641740:CDS	30.0%
CATGTTGTTATACCTATTGA+AGG	-	chr4_3:42510990-42511009	None:intergenic	30.0%
TTGATAGAATAAGACGTGTT+TGG	+	chr4_3:42511238-42511257	Msa0641740:intron	30.0%
AAAAAAAGAAAAAAGGGCAG+TGG	-	chr4_3:42511525-42511544	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	42510470	42515042	42510470	ID=Msa0641740;Name=Msa0641740
chr4_3	mRNA	42510470	42515042	42510470	ID=Msa0641740-mRNA-1;Parent=Msa0641740;Name=Msa0641740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111\|1\|1\|1\|1\|1\|2\|538\|292
chr4_3	exon	42510470	42511012	42510470	ID=Msa0641740-mRNA-1:exon:9605;Parent=Msa0641740-mRNA-1
chr4_3	exon	42514058	42515042	42514058	ID=Msa0641740-mRNA-1:exon:9606;Parent=Msa0641740-mRNA-1
chr4_3	five_prime_UTR	42510470	42510580	42510470	ID=Msa0641740-mRNA-1:five_prime_utr;Parent=Msa0641740-mRNA-1
chr4_3	CDS	42510581	42511012	42510581	ID=Msa0641740-mRNA-1:cds;Parent=Msa0641740-mRNA-1
chr4_3	CDS	42514058	42514504	42514058	ID=Msa0641740-mRNA-1:cds;Parent=Msa0641740-mRNA-1
chr4_3	three_prime_UTR	42514505	42515042	42514505	ID=Msa0641740-mRNA-1:three_prime_utr;Parent=Msa0641740-mRNA-1

Gene Sequence

>Msa0641740

ATGGCTATGATGGAGTGTGATGTAGAGGACAATAATTTCATTGAGTGGCTCAAACCATCTAATTCCTCTCAATCATATCTAACTTCATCATCATCATCTTCTTCTTCTACCACTCGAAATGAAACTATACAATTCTTTCCTATTTTGAGTGCAAAGTTTTCAAAGGATGAAGAGCGTGAAGTGCCACAAATTGAGGGTTTTGAGTTCAAAGAAGAAAAAGAGACTGTGGCTTTGCATATTGGATTACCTCATGACACTAAAACCTATCTTCATGAGAAGAAGTTTTTCCATGTTAAAGAAGAAGAAGAAAAGCCTTCTAAAAAAACCTTCCAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAATTTGCTTGCTCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACCAGACTCACTAAGAGGCACACAACCAGCTGCAATGCTAAGGCTACCATGCTACTGTTGTGTTCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGACTTTGAAAGACTTTAGAACTCTCCAAACTCACTACAAAAGAAAACATGGAACAAAACCATTTATGTGTAGAAAATGTGGGAAAACATTTGCTGTCAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGGTCTTTTGGAAAAGGTCATCGTCGTCTTCCTTCGATTGATGATCAAGCTTTCGAGGGGGAGAAGGGATGTGTTACTGGCTCTGAAGAAGATGAATTTGCTTGTACATGA

Protein sequence

>Msa0641740

MAMMECDVEDNNFIEWLKPSNSSQSYLTSSSSSSSSTTRNETIQFFPILSAKFSKDEEREVPQIEGFEFKEEKETVALHIGLPHDTKTYLHEKKFFHVKEEEEKPSKKTFQRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCVQGCKNNINHPRAKTLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHRRLPSIDDQAFEGEKGCVTGSEEDEFACT*