AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403660 MtrunA17_Chr1g0164981 97.204 608 17 0 1 608 1 608 0.0 1223
Msa0403660 MtrunA17_Chr5g0444881 48.217 589 277 7 16 602 15 577 0.0 528
Msa0403660 MtrunA17_Chr6g0476051 51.060 519 236 7 15 529 15 519 1.68e-165 489
Msa0403660 MtrunA17_Chr1g0188201 43.449 603 311 8 15 605 14 598 5.45e-152 455
Msa0403660 MtrunA17_Chr8g0354131 40.778 591 302 7 15 595 13 565 3.30e-149 442
Msa0403660 MtrunA17_Chr3g0122591 39.716 564 308 9 1 551 1 545 3.68e-133 402
Msa0403660 MtrunA17_Chr7g0245851 41.697 542 287 5 12 553 364 876 1.56e-119 379
Msa0403660 MtrunA17_Chr8g0345241 35.795 528 293 9 2 516 1 495 6.81e-97 305
Msa0403660 MtrunA17_Chr4g0039561 53.846 52 24 0 27 78 146 197 2.08e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403660 AT2G01910.1 66.883 616 186 7 1 607 1 607 0.0 800
Msa0403660 AT1G14690.1 65.253 613 192 8 1 605 1 600 0.0 798
Msa0403660 AT1G14690.2 65.253 613 192 8 1 605 1 600 0.0 798
Msa0403660 AT2G01910.2 67.826 575 168 6 41 607 1 566 0.0 757
Msa0403660 AT5G55230.3 46.812 596 288 8 16 605 15 587 1.33e-174 508
Msa0403660 AT5G55230.1 46.812 596 288 8 16 605 15 587 1.33e-174 508
Msa0403660 AT4G26760.1 46.362 591 281 8 16 602 15 573 6.62e-174 506
Msa0403660 AT5G55230.2 44.800 625 287 9 16 605 15 616 2.60e-168 493
Msa0403660 AT2G38720.1 43.281 573 291 6 20 592 12 550 3.85e-142 424
Msa0403660 AT5G51600.1 43.958 571 293 6 11 577 10 557 1.21e-139 423
Msa0403660 AT3G60840.1 41.502 506 282 4 13 517 12 504 3.72e-130 397
Msa0403660 AT1G27920.1 38.587 552 321 8 1 541 1 545 3.29e-128 389
Msa0403660 AT5G62250.2 40.141 568 304 8 12 566 5 549 7.14e-112 346
Msa0403660 AT5G62250.1 40.141 568 304 8 12 566 5 549 7.14e-112 346
Msa0403660 AT1G27920.2 38.795 415 244 5 1 412 1 408 5.44e-95 298

Find 163 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGCAATACCTGGAATTT+TGG 0.152671 3_2:+34134204 None:intergenic
TTTCTTGTTTAACTCTTAAA+AGG 0.152871 3_2:-34137175 Msa0403660:five_prime_UTR
CATTCTCTCTGTGGTGTTCT+TGG 0.163659 3_2:-34135266 Msa0403660:CDS
AACTTAACTTCCTACAATTA+TGG 0.195411 3_2:+34132622 None:intergenic
GGGAATGTTTGGATGTTTAT+AGG 0.201011 3_2:-34136065 Msa0403660:CDS
GTGAGAGTAGAGTGTGAAAA+AGG 0.209714 3_2:-34137101 Msa0403660:five_prime_UTR
GTAGATCTTGCATCTTCTTT+TGG 0.235244 3_2:+34133404 None:intergenic
AATCAAAAGGAAGCCATATA+TGG 0.244001 3_2:-34133376 Msa0403660:CDS
TAAGAAGAGGTCGGAGTTAG+AGG 0.273452 3_2:-34134711 Msa0403660:CDS
TTGCTTGTGAAGAGGAAAAT+TGG 0.274911 3_2:-34134406 Msa0403660:CDS
GGTACGTTTGGTGGAATTAT+TGG 0.281304 3_2:-34133944 Msa0403660:CDS
AAGTGCAAGTAGTGCTTATA+TGG 0.309402 3_2:+34137027 None:intergenic
CTCTTCTTCTCTCTGTTGCC+TGG 0.313221 3_2:+34133906 None:intergenic
AAGGTGAAAGCTTTGGTTAA+AGG 0.315024 3_2:+34137278 None:intergenic
TCAGGGGCAGTACTTGTATC+AGG 0.319336 3_2:+34134662 None:intergenic
ATTCGAACTTTGGAATTTGA+TGG 0.329583 3_2:-34134985 Msa0403660:CDS
AGGTGAAAGCTTTGGTTAAA+GGG 0.339792 3_2:+34137279 None:intergenic
CATGTTGTGTGCAGCAAATA+TGG 0.340690 3_2:-34136143 Msa0403660:intron
ATTATTATTTGTTGGAGCTT+TGG 0.349499 3_2:+34137465 None:intergenic
ACTAGGTTTAGACCCATATA+TGG 0.358084 3_2:+34133363 None:intergenic
CAGCAAATATGGAACGATAT+TGG 0.368433 3_2:-34136132 Msa0403660:CDS
TGAGGACAGGAAATTAGCTT+TGG 0.374600 3_2:-34132815 Msa0403660:three_prime_UTR
TGACTATATGTGTGTGTTGT+GGG 0.377016 3_2:-34132739 Msa0403660:three_prime_UTR
TCTCTGTGGTGTTCTTGGAT+TGG 0.377879 3_2:-34135261 Msa0403660:CDS
TCGCTAACCTATTCGAACTT+TGG 0.382162 3_2:-34134995 Msa0403660:CDS
GGAGCTGGAGAGGGAATGTT+TGG 0.387268 3_2:-34136076 Msa0403660:CDS
ATTAATGCACTAGCTTTCTC+AGG 0.388767 3_2:+34134644 None:intergenic
GGCAAAGTATTGTATTGAAA+TGG 0.388997 3_2:+34137672 None:intergenic
TCAAATTCCAAAGTTCGAAT+AGG 0.392179 3_2:+34134988 None:intergenic
TGGTGAAAGAGCGCCTCTTT+CGG 0.394133 3_2:+34134890 None:intergenic
GCTAGTGCATTAATAGATTC+TGG 0.395752 3_2:-34134635 Msa0403660:intron
TGTTGCAATCTCAGCTTCCT+TGG 0.397291 3_2:+34135987 None:intergenic
ACCTGAGTCCCATGCAAACT+TGG 0.397911 3_2:+34135209 None:intergenic
TAAACCTTCTCTATTATCTC+TGG 0.399001 3_2:+34134870 None:intergenic
CACTGCACCTCTCAACTTTG+TGG 0.407205 3_2:-34133143 Msa0403660:CDS
TTAAACTTGGGGAGGGGACT+CGG 0.411081 3_2:+34133075 None:intergenic
AAGAAGAGTTAAGAAGGAAC+AGG 0.422329 3_2:+34137364 None:intergenic
TTGGGGAGGGGACTCGGGTT+CGG 0.422995 3_2:+34133081 None:intergenic
AGATCTAAAGGTGAAAGCTT+TGG 0.423694 3_2:+34137271 None:intergenic
GGTGTTCTTGGATTGGATTT+CGG 0.424164 3_2:-34135254 Msa0403660:CDS
CTCAGCTTCCTTGGCTGCAA+GGG 0.426652 3_2:+34135996 None:intergenic
TTCTTCAATTCTTCGACCAA+TGG 0.430753 3_2:+34135647 None:intergenic
TTTGGATGTTTATAGGAGAA+AGG 0.430994 3_2:-34136058 Msa0403660:CDS
GTAACTATAACCAAAATTCC+AGG 0.440102 3_2:-34134214 Msa0403660:intron
TTGCCATGATTATTATTTGT+TGG 0.442236 3_2:+34137457 None:intergenic
CACACACCACGCTCCTACTC+TGG 0.447423 3_2:-34133205 Msa0403660:CDS
TAAACTTGGGGAGGGGACTC+GGG 0.452043 3_2:+34133076 None:intergenic
ATGTCATATGTAGGTACGTT+TGG 0.453660 3_2:-34133956 Msa0403660:intron
GATAACACTCGGTACAGTGC+TGG 0.455300 3_2:-34134280 Msa0403660:CDS
TCGTAGTCTTCAAAAGGAAA+AGG 0.455890 3_2:-34135450 Msa0403660:intron
GAAATTTATATAGATTAAGA+TGG 0.457640 3_2:-34135714 Msa0403660:intron
CTTATATGGATACTAGTGAT+AGG 0.457710 3_2:+34137041 None:intergenic
GAGGACAGGAAATTAGCTTT+GGG 0.458226 3_2:-34132814 Msa0403660:three_prime_UTR
GGACAAAGACCGTATGTTGA+TGG 0.458837 3_2:-34136097 Msa0403660:CDS
GATGTACATCATCTACCGTT+TGG 0.462046 3_2:+34135231 None:intergenic
ATCAAAAGGAAGCCATATAT+GGG 0.473492 3_2:-34133375 Msa0403660:CDS
GTAGAAGAGAAGTAACAGAT+AGG 0.475843 3_2:-34134445 Msa0403660:CDS
GCTTTGGGAAGTGTTGATAC+AGG 0.476414 3_2:-34132799 Msa0403660:three_prime_UTR
AAGATAAGTGGTGAGATTTG+TGG 0.477858 3_2:-34135572 Msa0403660:CDS
TACGACATTGTATCTTCCTT+AGG 0.478785 3_2:+34133115 None:intergenic
TTCTTTGCTCAAAGAACTTG+AGG 0.479736 3_2:-34137006 Msa0403660:intron
ACTATTCACAAGGTTTGCTC+TGG 0.480492 3_2:+34132902 None:intergenic
AGAAACATTAACAGATCTAA+AGG 0.482302 3_2:+34137259 None:intergenic
GCTCCAACAAATAATAATCA+TGG 0.482616 3_2:-34137460 Msa0403660:five_prime_UTR
AGATCTACTCCTAAATCAAA+AGG 0.486123 3_2:-34133389 Msa0403660:CDS
TCATCAATCCCTTGCAGCCA+AGG 0.486920 3_2:-34136004 Msa0403660:CDS
TCCTACTCTGGTCGTCATAA+CGG 0.487167 3_2:-34133193 Msa0403660:CDS
TTTGGTGTATAATGTATAGT+TGG 0.487323 3_2:+34137483 None:intergenic
GAATCAGAAATCACCGAAAG+AGG 0.488175 3_2:-34134903 Msa0403660:CDS
TTGACTATATGTGTGTGTTG+TGG 0.488446 3_2:-34132740 Msa0403660:three_prime_UTR
TTCTTGTTTAACTCTTAAAA+GGG 0.493783 3_2:-34137174 Msa0403660:five_prime_UTR
AGACCGTATGTTGATGGAGC+TGG 0.494507 3_2:-34136091 Msa0403660:CDS
TAAGAGAAGAAGAGTTAAGA+AGG 0.495250 3_2:+34137358 None:intergenic
AATGGCAACAGCGTCGGCTA+TGG 0.499985 3_2:-34133295 Msa0403660:CDS
TCCAAGTTTGCATGGGACTC+AGG 0.500735 3_2:-34135210 Msa0403660:CDS
GCATCTTCGTAGTCTTCAAA+AGG 0.501344 3_2:-34135456 Msa0403660:CDS
ACAAACGGTTATCGTGCAAA+TGG 0.503283 3_2:-34133313 Msa0403660:CDS
CAACTTTGTGGCTATACCTA+AGG 0.504876 3_2:-34133131 Msa0403660:CDS
CTGTGAATAATGTTGGCCAT+TGG 0.523179 3_2:-34137068 Msa0403660:exon
AGAAGAAAGGTTGAAACAGT+TGG 0.524504 3_2:-34135618 Msa0403660:CDS
ATTGAGTTCCGTCGAGGTGT+AGG 0.524668 3_2:+34133250 None:intergenic
TTTGCAGGCTTCGGCAGAAG+TGG 0.524852 3_2:-34134780 Msa0403660:intron
TCTCAGCTTCCTTGGCTGCA+AGG 0.526154 3_2:+34135995 None:intergenic
AAGGAAATCTAGAGTACAGA+AGG 0.531486 3_2:-34135114 Msa0403660:intron
GGTGATGTGGTGATTAGAGC+TGG 0.532649 3_2:-34132442 Msa0403660:three_prime_UTR
GATGTACATCCAAGTTTGCA+TGG 0.533457 3_2:-34135218 Msa0403660:CDS
AATGTGTAAAGAGGCAATGT+AGG 0.533685 3_2:+34137632 None:intergenic
ATAGATTCTGTGAATAATGT+TGG 0.534076 3_2:-34137075 Msa0403660:exon
AGTGGGATAGCTGACATTTG+AGG 0.535818 3_2:-34132833 Msa0403660:three_prime_UTR
AACAGCGTCGGCTATGGCAA+CGG 0.537538 3_2:-34133289 Msa0403660:CDS
AAGAAGAGAAGAGACGACAG+AGG 0.537947 3_2:-34133891 Msa0403660:CDS
AACAGCTTTAGAAAGACAAA+CGG 0.538225 3_2:-34133328 Msa0403660:CDS
ACACTCACATTATCATTGAC+CGG 0.539021 3_2:+34135542 None:intergenic
GCCAACATGACACTGACACT+TGG 0.540164 3_2:-34132510 Msa0403660:three_prime_UTR
GCTTGCATCTGTCACACCAT+TGG 0.541601 3_2:-34135663 Msa0403660:CDS
GTCGGCTATGGCAACGGCAA+TGG 0.545576 3_2:-34133283 Msa0403660:CDS
TAAAGAGGCAATGTAGGAGC+AGG 0.546206 3_2:+34137638 None:intergenic
AAAATTATGTGTTGGTGATG+TGG 0.548072 3_2:-34132455 Msa0403660:three_prime_UTR
GATACAGGTAGGGACAGTTA+AGG 0.549200 3_2:-34132784 Msa0403660:three_prime_UTR
TTCACCAGAGATAATAGAGA+AGG 0.551344 3_2:-34134874 Msa0403660:intron
CATTGAAGCACAAATAGTAA+AGG 0.552349 3_2:-34134486 Msa0403660:CDS
TCATATGTAGGTACGTTTGG+TGG 0.552696 3_2:-34133953 Msa0403660:intron
ACTCAAATAGAAAAGATAAG+TGG 0.553343 3_2:-34135584 Msa0403660:CDS
TATAAGCAAAACACTAGCAT+GGG 0.553893 3_2:-34134100 Msa0403660:CDS
AATGTGAGTGTCAGCAGCAC+AGG 0.555259 3_2:-34135530 Msa0403660:CDS
TGGATTGGATTTCGGCCAAA+CGG 0.556812 3_2:-34135246 Msa0403660:CDS
CAACACTAATAGCTGCACTC+GGG 0.560451 3_2:-34135969 Msa0403660:CDS
AAAGAGATCTGCATCGCTGA+AGG 0.560647 3_2:-34135690 Msa0403660:CDS
AAGAACTCGTATTTAAGAAG+AGG 0.561215 3_2:-34134724 Msa0403660:CDS
TCACATTATCATTGACCGGA+TGG 0.564269 3_2:+34135546 None:intergenic
ATAACACTCGGTACAGTGCT+GGG 0.566360 3_2:-34134279 Msa0403660:CDS
TTAATGCACTAGCTTTCTCA+GGG 0.568025 3_2:+34134645 None:intergenic
TGAGATTTGTGGAATCCATC+CGG 0.568147 3_2:-34135561 Msa0403660:CDS
TTATAAGCAAAACACTAGCA+TGG 0.571122 3_2:-34134101 Msa0403660:CDS
TTCTCAAGTTAAAAGCAGAA+AGG 0.571810 3_2:-34135133 Msa0403660:CDS
GTGGCTATTTGCTTGTGAAG+AGG 0.575177 3_2:-34134414 Msa0403660:CDS
GATAGCTGACATTTGAGGAC+AGG 0.575977 3_2:-34132828 Msa0403660:three_prime_UTR
TTTGAACTTAAACTTGGGGA+GGG 0.579865 3_2:+34133068 None:intergenic
CGTGCAAATGGCAACAGCGT+CGG 0.582083 3_2:-34133301 Msa0403660:CDS
GGGAAGTGTTGATACAGGTA+GGG 0.584185 3_2:-34132794 Msa0403660:three_prime_UTR
CAAGCAACATACTATTCACA+AGG 0.584516 3_2:+34132892 None:intergenic
GAGTTCCGTCGAGGTGTAGG+AGG 0.590544 3_2:+34133253 None:intergenic
TATGTTGATGGAGCTGGAGA+GGG 0.590639 3_2:-34136085 Msa0403660:CDS
GTATGTTGATGGAGCTGGAG+AGG 0.593155 3_2:-34136086 Msa0403660:CDS
GCAACACTAATAGCTGCACT+CGG 0.600020 3_2:-34135970 Msa0403660:CDS
ATGAAAGCGTGCTTTGATGT+TGG 0.600513 3_2:+34136023 None:intergenic
TCTCCAGCTCCATCAACATA+CGG 0.601579 3_2:+34136088 None:intergenic
ATGTATGTGTATTTATAACA+CGG 0.602805 3_2:-34132583 Msa0403660:three_prime_UTR
ATTAGCAATAGCACATTGGA+AGG 0.604701 3_2:-34135170 Msa0403660:CDS
TGGGAAGTGTTGATACAGGT+AGG 0.605766 3_2:-34132795 Msa0403660:three_prime_UTR
AATGAGGTGCATTCTCTCTG+TGG 0.607233 3_2:-34135275 Msa0403660:CDS
TTGAACTTAAACTTGGGGAG+GGG 0.607474 3_2:+34133069 None:intergenic
ACTCGGTACAGTGCTGGGCG+AGG 0.608408 3_2:-34134274 Msa0403660:CDS
ATGTACATCCAAGTTTGCAT+GGG 0.615491 3_2:-34135217 Msa0403660:CDS
TAACAGATAGGATTGATAAG+TGG 0.617891 3_2:-34134433 Msa0403660:CDS
ATTGCAAGACTTTCTGAAGT+CGG 0.617924 3_2:+34135303 None:intergenic
ATGTTAGCTAATAGTTCACA+AGG 0.618604 3_2:+34134506 None:intergenic
TGGATGATTACAAACTGACC+AGG 0.618666 3_2:-34133924 Msa0403660:CDS
CGATATTGGAGAGAGCGAGA+AGG 0.619852 3_2:-34136118 Msa0403660:CDS
TAGGAGCAGGTAAAGAGAAG+AGG 0.622831 3_2:+34137651 None:intergenic
ACTCGTATTTAAGAAGAGGT+CGG 0.627648 3_2:-34134720 Msa0403660:CDS
TAATATTAGCAATAGCACAT+TGG 0.628365 3_2:-34135174 Msa0403660:CDS
CTATGCCTCCTACACCTCGA+CGG 0.629673 3_2:-34133258 Msa0403660:CDS
AGAAGAGAAGAGACGACAGA+GGG 0.631005 3_2:-34133890 Msa0403660:intron
CACAAAGTTGAGAGGTGCAG+TGG 0.632051 3_2:+34133144 None:intergenic
ACATGGACAGTGAGACTGAG+TGG 0.635850 3_2:-34132851 Msa0403660:three_prime_UTR
AGTCTTGCAATGTGTGAATG+AGG 0.639710 3_2:-34135291 Msa0403660:CDS
AACACTAATAGCTGCACTCG+GGG 0.641813 3_2:-34135968 Msa0403660:CDS
GGAACATGATATGAGCTCAC+CGG 0.642778 3_2:-34135947 Msa0403660:intron
ACCAAGTGTCAGTGTCATGT+TGG 0.642997 3_2:+34132509 None:intergenic
AAGTTTGCATGGGACTCAGG+TGG 0.643834 3_2:-34135207 Msa0403660:CDS
CATGGACAGTGAGACTGAGT+GGG 0.651814 3_2:-34132850 Msa0403660:three_prime_UTR
ACTAGTGATAGGACTTCCAA+TGG 0.653569 3_2:+34137052 None:intergenic
TCCGTTATGACGACCAGAGT+AGG 0.653657 3_2:+34133192 None:intergenic
GTGAGTGTCAGCAGCACAGG+TGG 0.659272 3_2:-34135527 Msa0403660:CDS
GGTATAGCCACAAAGTTGAG+AGG 0.671097 3_2:+34133136 None:intergenic
AATAAGCTGAGATATATACA+TGG 0.679152 3_2:-34132868 Msa0403660:three_prime_UTR
GCGAATTTCAGGATAACACT+CGG 0.680323 3_2:-34134291 Msa0403660:intron
CCGCTCATTGAGTTCCGTCG+AGG 0.692714 3_2:+34133244 None:intergenic
TGACGACCAGAGTAGGAGCG+TGG 0.694307 3_2:+34133199 None:intergenic
TTATAGGAGAAAGGTTGACG+AGG 0.725409 3_2:-34136049 Msa0403660:CDS
CCTCGACGGAACTCAATGAG+CGG 0.735513 3_2:-34133244 Msa0403660:CDS
TAATGCACTAGCTTTCTCAG+GGG 0.766836 3_2:+34134646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGGAA+GGG + chr3_2:34132672-34132691 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAAGGA+AGG + chr3_2:34132673-34132692 None:intergenic 10.0%
!!! TAATTACTTTTTTTTTTTGA+AGG - chr3_2:34136583-34136602 Msa0403660:intron 10.0%
!! TATATTTAACAAATGAAAAT+TGG + chr3_2:34137168-34137187 None:intergenic 10.0%
!!! AAAAGATAATGGTATTTTTA+GGG + chr3_2:34132623-34132642 None:intergenic 15.0%
!!! AAAAAGATAATGGTATTTTT+AGG + chr3_2:34132624-34132643 None:intergenic 15.0%
!!! TTTTATTGTTAATTTTCATG+TGG - chr3_2:34133601-34133620 Msa0403660:intron 15.0%
!! AATTGAAAATTTCACTATAT+TGG - chr3_2:34133652-34133671 Msa0403660:intron 15.0%
!!! TAAAAAATCAATTTTATGCA+TGG - chr3_2:34134294-34134313 Msa0403660:intron 15.0%
!! GAAATTTATATAGATTAAGA+TGG - chr3_2:34134471-34134490 Msa0403660:CDS 15.0%
!! ATAATAAGACTAAAACATAA+GGG + chr3_2:34135113-34135132 None:intergenic 15.0%
!! AATAATAAGACTAAAACATA+AGG + chr3_2:34135114-34135133 None:intergenic 15.0%
!!! TTTAAAAAGTACAATTAAGA+GGG + chr3_2:34135150-34135169 None:intergenic 15.0%
!!! TTTTAAAAAGTACAATTAAG+AGG + chr3_2:34135151-34135170 None:intergenic 15.0%
!!! TTTTTGAAACAAAGAAAAAA+TGG + chr3_2:34137714-34137733 None:intergenic 15.0%
!!! TTTCTTTTGTTTCAAAACAA+TGG - chr3_2:34132944-34132963 Msa0403660:intron 20.0%
!!! TTTCTTGTTTAACTCTTAAA+AGG - chr3_2:34133010-34133029 Msa0403660:intron 20.0%
!!! TTCTTGTTTAACTCTTAAAA+GGG - chr3_2:34133011-34133030 Msa0403660:intron 20.0%
!!! TGTAGGTTATTTTATTGTAA+GGG - chr3_2:34133484-34133503 Msa0403660:intron 20.0%
!!! AATTTCACTATATTGGTTTT+TGG - chr3_2:34133659-34133678 Msa0403660:intron 20.0%
!! AAAAAAGCGAATCAATAATA+TGG + chr3_2:34133878-34133897 None:intergenic 20.0%
!! GAAGTAACAAATAAAGAAAA+AGG + chr3_2:34133994-34134013 None:intergenic 20.0%
!!! TACTTCAATTTTTTTACCTT+CGG - chr3_2:34134008-34134027 Msa0403660:intron 20.0%
!! TTGATGTATTAATATACTTG+AGG - chr3_2:34134427-34134446 Msa0403660:CDS 20.0%
!!! TTAAAAAGTACAATTAAGAG+GGG + chr3_2:34135149-34135168 None:intergenic 20.0%
!! AAACATGGAAAATATATGAA+AGG + chr3_2:34135372-34135391 None:intergenic 20.0%
!! TTACACAGGTAATAAATTAA+GGG + chr3_2:34136498-34136517 None:intergenic 20.0%
!! TAAAACTAATTACTTAACCT+TGG - chr3_2:34136608-34136627 Msa0403660:intron 20.0%
!! TAAGTTCAAAAAACCAAAAA+TGG - chr3_2:34137130-34137149 Msa0403660:five_prime_UTR 20.0%
!! TATATAGTTCTTTAGTCAAA+AGG - chr3_2:34137186-34137205 Msa0403660:five_prime_UTR 20.0%
!! ATATAGTTCTTTAGTCAAAA+GGG - chr3_2:34137187-34137206 Msa0403660:five_prime_UTR 20.0%
!!! TTATTTTGATCCATAATTGT+AGG - chr3_2:34137553-34137572 Msa0403660:five_prime_UTR 20.0%
!! ATGTATGTGTATTTATAACA+CGG - chr3_2:34137602-34137621 Msa0403660:five_prime_UTR 20.0%
!! TTGTTTCAAAAATTATGTGT+TGG - chr3_2:34137722-34137741 Msa0403660:five_prime_UTR 20.0%
!!! ATAATGGTATTTTTAGGGTT+TGG + chr3_2:34132618-34132637 None:intergenic 25.0%
! AGATGCAAAGAAAAAGATAA+TGG + chr3_2:34132634-34132653 None:intergenic 25.0%
!! TTTGGTGTATAATGTATAGT+TGG + chr3_2:34132705-34132724 None:intergenic 25.0%
!! ATTATTATTTGTTGGAGCTT+TGG + chr3_2:34132723-34132742 None:intergenic 25.0%
! TTGCCATGATTATTATTTGT+TGG + chr3_2:34132731-34132750 None:intergenic 25.0%
!!! AACAGGATTTGTTTGTTTTT+AGG + chr3_2:34132807-34132826 None:intergenic 25.0%
! TTTCAGAAAAAGAAAGTAAC+AGG + chr3_2:34132859-34132878 None:intergenic 25.0%
! AGAAACATTAACAGATCTAA+AGG + chr3_2:34132929-34132948 None:intergenic 25.0%
! ATAGATTCTGTGAATAATGT+TGG - chr3_2:34133110-34133129 Msa0403660:CDS 25.0%
!!! GTGTTTTTTTCAAAATGATG+AGG - chr3_2:34133249-34133268 Msa0403660:CDS 25.0%
! GTTAGAGAATAACACAAAAT+AGG + chr3_2:34133381-34133400 None:intergenic 25.0%
!!! TTTAAAAGAGAAAGCACTTA+TGG - chr3_2:34133449-34133468 Msa0403660:intron 25.0%
!!! CTGTAGGTTATTTTATTGTA+AGG - chr3_2:34133483-34133502 Msa0403660:intron 25.0%
!!! GTAGGTTATTTTATTGTAAG+GGG - chr3_2:34133485-34133504 Msa0403660:intron 25.0%
!!! TAGGTTATTTTATTGTAAGG+GGG - chr3_2:34133486-34133505 Msa0403660:intron 25.0%
!!! AAAAATGACTTTTTCAACTC+AGG + chr3_2:34133546-34133565 None:intergenic 25.0%
!!! TGGTTTTTGGTAACAAATTT+TGG - chr3_2:34133672-34133691 Msa0403660:intron 25.0%
! TACCAATTCAGTAGTTAATA+TGG - chr3_2:34133699-34133718 Msa0403660:intron 25.0%
! ACCAATTCAGTAGTTAATAT+GGG - chr3_2:34133700-34133719 Msa0403660:intron 25.0%
! GAAAATTCATGATAAAGTGA+TGG - chr3_2:34133912-34133931 Msa0403660:CDS 25.0%
! CAAGTCATTTATGTATTTAC+CGG + chr3_2:34134260-34134279 None:intergenic 25.0%
!! AAAATCAATTTTATGCATGG+TGG - chr3_2:34134297-34134316 Msa0403660:intron 25.0%
! AAAAACGCGCAAAATTATAA+AGG + chr3_2:34134340-34134359 None:intergenic 25.0%
! TGAAGAAGAAAAAAGAAGAA+AGG - chr3_2:34134554-34134573 Msa0403660:intron 25.0%
! ACTCAAATAGAAAAGATAAG+TGG - chr3_2:34134601-34134620 Msa0403660:intron 25.0%
! TAATATTAGCAATAGCACAT+TGG - chr3_2:34135011-34135030 Msa0403660:CDS 25.0%
!! TAAAAAGTACAATTAAGAGG+GGG + chr3_2:34135148-34135167 None:intergenic 25.0%
!!! CTTTTTAAAAATGCAGTTGA+AGG - chr3_2:34135161-34135180 Msa0403660:CDS 25.0%
! ATGAAAGGAAAAAATGATGA+TGG + chr3_2:34135357-34135376 None:intergenic 25.0%
! AAATTCATGTTAATGCAACA+GGG + chr3_2:34135582-34135601 None:intergenic 25.0%
! TGATTGTTAATGTCATATGT+AGG - chr3_2:34136220-34136239 Msa0403660:intron 25.0%
! TAGTACATAAGATCAATTTG+AGG + chr3_2:34136369-34136388 None:intergenic 25.0%
!! CTGACATAGAAGAAATATTT+TGG - chr3_2:34136405-34136424 Msa0403660:intron 25.0%
!!! TGTGATTTTTTCTTACAAAC+AGG + chr3_2:34136432-34136451 None:intergenic 25.0%
! CTTACACAGGTAATAAATTA+AGG + chr3_2:34136499-34136518 None:intergenic 25.0%
! AATTTATTACCTGTGTAAGT+TGG - chr3_2:34136500-34136519 Msa0403660:intron 25.0%
!!! TTTTCTGTTTTTGATCTCAA+AGG - chr3_2:34136757-34136776 Msa0403660:intron 25.0%
!!! CTAAAGCTGTTAGTTTTTTT+TGG + chr3_2:34136848-34136867 None:intergenic 25.0%
!!! GTTTTTTGAACTTAAACTTG+GGG + chr3_2:34137124-34137143 None:intergenic 25.0%
!!! GGTTTTTTGAACTTAAACTT+GGG + chr3_2:34137125-34137144 None:intergenic 25.0%
!!! TGGTTTTTTGAACTTAAACT+TGG + chr3_2:34137126-34137145 None:intergenic 25.0%
! TTCAAAAAACCAAAAATGGT+AGG - chr3_2:34137134-34137153 Msa0403660:five_prime_UTR 25.0%
! AATAAGCTGAGATATATACA+TGG - chr3_2:34137317-34137336 Msa0403660:five_prime_UTR 25.0%
! AACTTAACTTCCTACAATTA+TGG + chr3_2:34137566-34137585 None:intergenic 25.0%
!! GGCAAAGTATTGTATTGAAA+TGG + chr3_2:34132516-34132535 None:intergenic 30.0%
GCAAAAATGAATGTGTAAAG+AGG + chr3_2:34132565-34132584 None:intergenic 30.0%
GCTCCAACAAATAATAATCA+TGG - chr3_2:34132725-34132744 Msa0403660:three_prime_UTR 30.0%
TAGGAGAGAGAAAAATGAAA+AGG + chr3_2:34132788-34132807 None:intergenic 30.0%
TAAGAGAAGAAGAGTTAAGA+AGG + chr3_2:34132830-34132849 None:intergenic 30.0%
!!! TCTTGAATTGTGTTGTTTTG+AGG - chr3_2:34133047-34133066 Msa0403660:intron 30.0%
CTTATATGGATACTAGTGAT+AGG + chr3_2:34133147-34133166 None:intergenic 30.0%
GAGAAGAAACAAAACATCAT+TGG + chr3_2:34133403-34133422 None:intergenic 30.0%
!!! ATGATGTTTTGTTTCTTCTC+AGG - chr3_2:34133403-34133422 Msa0403660:CDS 30.0%
!! AGAAAGCACTTATGGTTATA+GGG - chr3_2:34133457-34133476 Msa0403660:intron 30.0%
! TATTTTATTGTAAGGGGGAA+AGG - chr3_2:34133491-34133510 Msa0403660:intron 30.0%
! ATTTTATTGTAAGGGGGAAA+GGG - chr3_2:34133492-34133511 Msa0403660:intron 30.0%
TCCCATATTAACTACTGAAT+TGG + chr3_2:34133704-34133723 None:intergenic 30.0%
!!! TATGGGATTTTAGTTTGACT+TGG - chr3_2:34133717-34133736 Msa0403660:intron 30.0%
TATGCAAAGTCTATCCTATT+TGG + chr3_2:34133800-34133819 None:intergenic 30.0%
TATAGAATGAGTCTCTTGAT+TGG - chr3_2:34133818-34133837 Msa0403660:intron 30.0%
TTTGGATGTTTATAGGAGAA+AGG - chr3_2:34134127-34134146 Msa0403660:intron 30.0%
!! TCAATCTACCTATTTTGAGA+AGG - chr3_2:34134386-34134405 Msa0403660:intron 30.0%
!! CAATCTACCTATTTTGAGAA+GGG - chr3_2:34134387-34134406 Msa0403660:intron 30.0%
AATACATCAAAAAGCTTTCG+TGG + chr3_2:34134417-34134436 None:intergenic 30.0%
AATAAATGAAAGCTCTTCGA+TGG - chr3_2:34134775-34134794 Msa0403660:CDS 30.0%
CTGGAAGAAAAAAAAAAGCA+CGG + chr3_2:34134857-34134876 None:intergenic 30.0%
!!! GCTTTTTTTTTTCTTCCAGT+CGG - chr3_2:34134858-34134877 Msa0403660:intron 30.0%
!!! TTCTGCTTTTAACTTGAGAA+TGG + chr3_2:34135052-34135071 None:intergenic 30.0%
TTCTCAAGTTAAAAGCAGAA+AGG - chr3_2:34135052-34135071 Msa0403660:intron 30.0%
TCAAATTCCAAAGTTCGAAT+AGG + chr3_2:34135200-34135219 None:intergenic 30.0%
!! ATTCGAACTTTGGAATTTGA+TGG - chr3_2:34135200-34135219 Msa0403660:CDS 30.0%
TAAACCTTCTCTATTATCTC+TGG + chr3_2:34135318-34135337 None:intergenic 30.0%
AAGAACTCGTATTTAAGAAG+AGG - chr3_2:34135461-34135480 Msa0403660:CDS 30.0%
CAAATTCATGTTAATGCAAC+AGG + chr3_2:34135583-34135602 None:intergenic 30.0%
ATGTTAGCTAATAGTTCACA+AGG + chr3_2:34135682-34135701 None:intergenic 30.0%
CATTGAAGCACAAATAGTAA+AGG - chr3_2:34135699-34135718 Msa0403660:CDS 30.0%
TAACAGATAGGATTGATAAG+TGG - chr3_2:34135752-34135771 Msa0403660:intron 30.0%
GTAACTATAACCAAAATTCC+AGG - chr3_2:34135971-34135990 Msa0403660:CDS 30.0%
TGGAACTTTCAACAACAAAT+AGG + chr3_2:34136014-34136033 None:intergenic 30.0%
TTATAAGCAAAACACTAGCA+TGG - chr3_2:34136084-34136103 Msa0403660:CDS 30.0%
TATAAGCAAAACACTAGCAT+GGG - chr3_2:34136085-34136104 Msa0403660:CDS 30.0%
!! AAGACTTGTTTTCTATACGA+TGG - chr3_2:34136119-34136138 Msa0403660:CDS 30.0%
!! AGACTTGTTTTCTATACGAT+GGG - chr3_2:34136120-34136139 Msa0403660:CDS 30.0%
GTGAAAACCAGAAATAACTA+TGG + chr3_2:34136163-34136182 None:intergenic 30.0%
TAAAAATAACTCTGCGAAGA+CGG + chr3_2:34136185-34136204 None:intergenic 30.0%
ATAGGAAAATATGGGCAAAA+AGG + chr3_2:34136329-34136348 None:intergenic 30.0%
GGATGATCATAGGAAAATAT+GGG + chr3_2:34136337-34136356 None:intergenic 30.0%
ATCAATTTGAGGACAAACAA+CGG + chr3_2:34136358-34136377 None:intergenic 30.0%
! ATGTACTATTTTACTCCCTT+TGG - chr3_2:34136381-34136400 Msa0403660:intron 30.0%
GTGTAGAACATTTAATGTGA+TGG - chr3_2:34136522-34136541 Msa0403660:intron 30.0%
AAAAACAGAAAACCAGAAGT+GGG + chr3_2:34136749-34136768 None:intergenic 30.0%
AGATCTACTCCTAAATCAAA+AGG - chr3_2:34136796-34136815 Msa0403660:intron 30.0%
!!! ATATGGCTTCCTTTTGATTT+AGG + chr3_2:34136808-34136827 None:intergenic 30.0%
AATCAAAAGGAAGCCATATA+TGG - chr3_2:34136809-34136828 Msa0403660:intron 30.0%
ATCAAAAGGAAGCCATATAT+GGG - chr3_2:34136810-34136829 Msa0403660:intron 30.0%
!!! CTGTTAGTTTTTTTTGGACT+AGG + chr3_2:34136842-34136861 None:intergenic 30.0%
!! AACAGCTTTAGAAAGACAAA+CGG - chr3_2:34136857-34136876 Msa0403660:intron 30.0%
! GAAATACAACCTACCATTTT+TGG + chr3_2:34137146-34137165 None:intergenic 30.0%
!!! CTGGTTTTAACAATGTTTAC+AGG + chr3_2:34137267-34137286 None:intergenic 30.0%
!! AAAATTATGTGTTGGTGATG+TGG - chr3_2:34137730-34137749 Msa0403660:five_prime_UTR 30.0%
AATGTGTAAAGAGGCAATGT+AGG + chr3_2:34132556-34132575 None:intergenic 35.0%
!!! TATTTTTAGGGTTTGGTTGG+TGG + chr3_2:34132611-34132630 None:intergenic 35.0%
!!! TGGTATTTTTAGGGTTTGGT+TGG + chr3_2:34132614-34132633 None:intergenic 35.0%
AAGAAGAGTTAAGAAGGAAC+AGG + chr3_2:34132824-34132843 None:intergenic 35.0%
! AGGTGAAAGCTTTGGTTAAA+GGG + chr3_2:34132909-34132928 None:intergenic 35.0%
! AAGGTGAAAGCTTTGGTTAA+AGG + chr3_2:34132910-34132929 None:intergenic 35.0%
AGATCTAAAGGTGAAAGCTT+TGG + chr3_2:34132917-34132936 None:intergenic 35.0%
TGAGAGTAGAGTGTGAAAAA+GGG - chr3_2:34133085-34133104 Msa0403660:CDS 35.0%
AAGTGCAAGTAGTGCTTATA+TGG + chr3_2:34133161-34133180 None:intergenic 35.0%
TTCTTTGCTCAAAGAACTTG+AGG - chr3_2:34133179-34133198 Msa0403660:CDS 35.0%
!! GTTGATGATGATGAATAGTG+TGG - chr3_2:34133316-34133335 Msa0403660:CDS 35.0%
!! GAGAAAGCACTTATGGTTAT+AGG - chr3_2:34133456-34133475 Msa0403660:intron 35.0%
! TTTTATTGTAAGGGGGAAAG+GGG - chr3_2:34133493-34133512 Msa0403660:intron 35.0%
!!! TCCTGTTGTTTTTGCCAAAT+AGG - chr3_2:34133783-34133802 Msa0403660:intron 35.0%
TCCTATTTGGCAAAAACAAC+AGG + chr3_2:34133787-34133806 None:intergenic 35.0%
! ATATTTGCTGCACACAACAT+GGG + chr3_2:34134043-34134062 None:intergenic 35.0%
CAGCAAATATGGAACGATAT+TGG - chr3_2:34134053-34134072 Msa0403660:intron 35.0%
GGGAATGTTTGGATGTTTAT+AGG - chr3_2:34134120-34134139 Msa0403660:intron 35.0%
TTCTTCAATTCTTCGACCAA+TGG + chr3_2:34134541-34134560 None:intergenic 35.0%
AGAAGAAAGGTTGAAACAGT+TGG - chr3_2:34134567-34134586 Msa0403660:intron 35.0%
AAGATAAGTGGTGAGATTTG+TGG - chr3_2:34134613-34134632 Msa0403660:intron 35.0%
ACACTCACATTATCATTGAC+CGG + chr3_2:34134646-34134665 None:intergenic 35.0%
TCGTAGTCTTCAAAAGGAAA+AGG - chr3_2:34134735-34134754 Msa0403660:CDS 35.0%
!! ATTGCAAGACTTTCTGAAGT+CGG + chr3_2:34134885-34134904 None:intergenic 35.0%
ATGTACATCCAAGTTTGCAT+GGG - chr3_2:34134968-34134987 Msa0403660:CDS 35.0%
ATTAGCAATAGCACATTGGA+AGG - chr3_2:34135015-34135034 Msa0403660:intron 35.0%
! AAGGAAATCTAGAGTACAGA+AGG - chr3_2:34135071-34135090 Msa0403660:intron 35.0%
! AAGAGAGAAACTCTTTTCTG+AGG - chr3_2:34135235-34135254 Msa0403660:CDS 35.0%
TTCACCAGAGATAATAGAGA+AGG - chr3_2:34135311-34135330 Msa0403660:CDS 35.0%
AAAGCACATTTCAGCAAACA+TGG + chr3_2:34135387-34135406 None:intergenic 35.0%
ACTCGTATTTAAGAAGAGGT+CGG - chr3_2:34135465-34135484 Msa0403660:CDS 35.0%
!! TTAATGCACTAGCTTTCTCA+GGG + chr3_2:34135543-34135562 None:intergenic 35.0%
!! ATTAATGCACTAGCTTTCTC+AGG + chr3_2:34135544-34135563 None:intergenic 35.0%
GCTAGTGCATTAATAGATTC+TGG - chr3_2:34135550-34135569 Msa0403660:CDS 35.0%
!!! GAATCCTCTGTTTTTGATAC+AGG - chr3_2:34135646-34135665 Msa0403660:CDS 35.0%
GTAGAAGAGAAGTAACAGAT+AGG - chr3_2:34135740-34135759 Msa0403660:intron 35.0%
TTGCTTGTGAAGAGGAAAAT+TGG - chr3_2:34135779-34135798 Msa0403660:intron 35.0%
GAGAGAATTACAGACTTACT+TGG + chr3_2:34135819-34135838 None:intergenic 35.0%
AGAGAACACACTGTCATTAT+AGG + chr3_2:34136043-34136062 None:intergenic 35.0%
ATAAGATTGTCAACCATTGC+TGG + chr3_2:34136068-34136087 None:intergenic 35.0%
!! GACTTGTTTTCTATACGATG+GGG - chr3_2:34136121-34136140 Msa0403660:CDS 35.0%
! AAGTGGTCCATAGTTATTTC+TGG - chr3_2:34136153-34136172 Msa0403660:intron 35.0%
ATGTCATATGTAGGTACGTT+TGG - chr3_2:34136229-34136248 Msa0403660:intron 35.0%
CGGATGATCATAGGAAAATA+TGG + chr3_2:34136338-34136357 None:intergenic 35.0%
TTCTTCTATGTCAGACCAAA+GGG + chr3_2:34136399-34136418 None:intergenic 35.0%
TTTCTTCTATGTCAGACCAA+AGG + chr3_2:34136400-34136419 None:intergenic 35.0%
! TATCTTCTCTCTTTTGACCA+AGG + chr3_2:34136628-34136647 None:intergenic 35.0%
TACTGTAAATAACCCACTTC+TGG - chr3_2:34136734-34136753 Msa0403660:intron 35.0%
CAAAAACAGAAAACCAGAAG+TGG + chr3_2:34136750-34136769 None:intergenic 35.0%
! GTAGATCTTGCATCTTCTTT+TGG + chr3_2:34136784-34136803 None:intergenic 35.0%
ACTAGGTTTAGACCCATATA+TGG + chr3_2:34136825-34136844 None:intergenic 35.0%
TACGACATTGTATCTTCCTT+AGG + chr3_2:34137073-34137092 None:intergenic 35.0%
TTTGAACTTAAACTTGGGGA+GGG + chr3_2:34137120-34137139 None:intergenic 35.0%
! TTTTGAACTTAAACTTGGGG+AGG + chr3_2:34137121-34137140 None:intergenic 35.0%
CAAGCAACATACTATTCACA+AGG + chr3_2:34137296-34137315 None:intergenic 35.0%
TTGACTATATGTGTGTGTTG+TGG - chr3_2:34137445-34137464 Msa0403660:five_prime_UTR 35.0%
TGACTATATGTGTGTGTTGT+GGG - chr3_2:34137446-34137465 Msa0403660:five_prime_UTR 35.0%
GTGAGAGTAGAGTGTGAAAA+AGG - chr3_2:34133084-34133103 Msa0403660:CDS 40.0%
CTGTGAATAATGTTGGCCAT+TGG - chr3_2:34133117-34133136 Msa0403660:CDS 40.0%
ACTAGTGATAGGACTTCCAA+TGG + chr3_2:34133136-34133155 None:intergenic 40.0%
TATGGTTATAGGGTCTCTGT+AGG - chr3_2:34133467-34133486 Msa0403660:intron 40.0%
! CATATTTGCTGCACACAACA+TGG + chr3_2:34134044-34134063 None:intergenic 40.0%
CATGTTGTGTGCAGCAAATA+TGG - chr3_2:34134042-34134061 Msa0403660:intron 40.0%
TTATAGGAGAAAGGTTGACG+AGG - chr3_2:34134136-34134155 Msa0403660:intron 40.0%
! ATGAAAGCGTGCTTTGATGT+TGG + chr3_2:34134165-34134184 None:intergenic 40.0%
TGGTGTTCCCTTCTCAAAAT+AGG + chr3_2:34134397-34134416 None:intergenic 40.0%
TGAGATTTGTGGAATCCATC+CGG - chr3_2:34134624-34134643 Msa0403660:intron 40.0%
TCACATTATCATTGACCGGA+TGG + chr3_2:34134642-34134661 None:intergenic 40.0%
GCATCTTCGTAGTCTTCAAA+AGG - chr3_2:34134729-34134748 Msa0403660:CDS 40.0%
AGTCTTGCAATGTGTGAATG+AGG - chr3_2:34134894-34134913 Msa0403660:CDS 40.0%
! GGTGTTCTTGGATTGGATTT+CGG - chr3_2:34134931-34134950 Msa0403660:CDS 40.0%
GATGTACATCATCTACCGTT+TGG + chr3_2:34134957-34134976 None:intergenic 40.0%
GATGTACATCCAAGTTTGCA+TGG - chr3_2:34134967-34134986 Msa0403660:CDS 40.0%
TCGCTAACCTATTCGAACTT+TGG - chr3_2:34135190-34135209 Msa0403660:CDS 40.0%
GAATCAGAAATCACCGAAAG+AGG - chr3_2:34135282-34135301 Msa0403660:CDS 40.0%
! TTGCTGAAATGTGCTTTTGC+AGG - chr3_2:34135390-34135409 Msa0403660:intron 40.0%
! AAATGTGCTTTTGCAGGCTT+CGG - chr3_2:34135396-34135415 Msa0403660:intron 40.0%
!! TAATGCACTAGCTTTCTCAG+GGG + chr3_2:34135542-34135561 None:intergenic 40.0%
ACAGAGGATTCGATAGTATC+AGG + chr3_2:34135637-34135656 None:intergenic 40.0%
CAAGCCTGTATCAAAAACAG+AGG + chr3_2:34135653-34135672 None:intergenic 40.0%
!!! CTCTGTTTTTGATACAGGCT+TGG - chr3_2:34135651-34135670 Msa0403660:CDS 40.0%
GCGAATTTCAGGATAACACT+CGG - chr3_2:34135894-34135913 Msa0403660:intron 40.0%
! GACAGCAATACCTGGAATTT+TGG + chr3_2:34135984-34136003 None:intergenic 40.0%
! TCCAGGTATTGCTGTCATTA+AGG - chr3_2:34135988-34136007 Msa0403660:CDS 40.0%
! TTGTTGTTGAAAGTTCCACG+TGG - chr3_2:34136016-34136035 Msa0403660:CDS 40.0%
TCATATGTAGGTACGTTTGG+TGG - chr3_2:34136232-34136251 Msa0403660:intron 40.0%
! GGTACGTTTGGTGGAATTAT+TGG - chr3_2:34136241-34136260 Msa0403660:intron 40.0%
TGGATGATTACAAACTGACC+AGG - chr3_2:34136261-34136280 Msa0403660:intron 40.0%
GACAAACAACGGATGATCAT+AGG + chr3_2:34136347-34136366 None:intergenic 40.0%
TGTTCTACACCAACTTACAC+AGG + chr3_2:34136512-34136531 None:intergenic 40.0%
ACAAACGGTTATCGTGCAAA+TGG - chr3_2:34136872-34136891 Msa0403660:intron 40.0%
CAACTTTGTGGCTATACCTA+AGG - chr3_2:34137054-34137073 Msa0403660:CDS 40.0%
TTGAACTTAAACTTGGGGAG+GGG + chr3_2:34137119-34137138 None:intergenic 40.0%
GATAATGACTCTACTTGTGC+AGG - chr3_2:34137225-34137244 Msa0403660:five_prime_UTR 40.0%
! ACTATTCACAAGGTTTGCTC+TGG + chr3_2:34137286-34137305 None:intergenic 40.0%
! TGAGGACAGGAAATTAGCTT+TGG - chr3_2:34137370-34137389 Msa0403660:five_prime_UTR 40.0%
!! GAGGACAGGAAATTAGCTTT+GGG - chr3_2:34137371-34137390 Msa0403660:five_prime_UTR 40.0%
TAGGAGCAGGTAAAGAGAAG+AGG + chr3_2:34132537-34132556 None:intergenic 45.0%
TAAAGAGGCAATGTAGGAGC+AGG + chr3_2:34132550-34132569 None:intergenic 45.0%
ACATGGGATTTGTCAACCGA+AGG + chr3_2:34134027-34134046 None:intergenic 45.0%
GGACAAAGACCGTATGTTGA+TGG - chr3_2:34134088-34134107 Msa0403660:CDS 45.0%
TCTCCAGCTCCATCAACATA+CGG + chr3_2:34134100-34134119 None:intergenic 45.0%
! TATGTTGATGGAGCTGGAGA+GGG - chr3_2:34134100-34134119 Msa0403660:CDS 45.0%
TGTTGCAATCTCAGCTTCCT+TGG + chr3_2:34134201-34134220 None:intergenic 45.0%
GCAACACTAATAGCTGCACT+CGG - chr3_2:34134215-34134234 Msa0403660:CDS 45.0%
CAACACTAATAGCTGCACTC+GGG - chr3_2:34134216-34134235 Msa0403660:CDS 45.0%
AACACTAATAGCTGCACTCG+GGG - chr3_2:34134217-34134236 Msa0403660:CDS 45.0%
GGAACATGATATGAGCTCAC+CGG - chr3_2:34134238-34134257 Msa0403660:CDS 45.0%
AAAGAGATCTGCATCGCTGA+AGG - chr3_2:34134495-34134514 Msa0403660:CDS 45.0%
AATGAGGTGCATTCTCTCTG+TGG - chr3_2:34134910-34134929 Msa0403660:CDS 45.0%
CATTCTCTCTGTGGTGTTCT+TGG - chr3_2:34134919-34134938 Msa0403660:CDS 45.0%
TCTCTGTGGTGTTCTTGGAT+TGG - chr3_2:34134924-34134943 Msa0403660:CDS 45.0%
! TGGATTGGATTTCGGCCAAA+CGG - chr3_2:34134939-34134958 Msa0403660:CDS 45.0%
TAAGAAGAGGTCGGAGTTAG+AGG - chr3_2:34135474-34135493 Msa0403660:CDS 45.0%
GTGGCTATTTGCTTGTGAAG+AGG - chr3_2:34135771-34135790 Msa0403660:intron 45.0%
GCTTGTTCTCTGACCTGATA+CGG - chr3_2:34135872-34135891 Msa0403660:intron 45.0%
ATCCTGAAATTCGCCGTATC+AGG + chr3_2:34135888-34135907 None:intergenic 45.0%
ATAACACTCGGTACAGTGCT+GGG - chr3_2:34135906-34135925 Msa0403660:intron 45.0%
GCCTTAATGACAGCAATACC+TGG + chr3_2:34135992-34136011 None:intergenic 45.0%
ACTGTCATTATAGGTCCACG+TGG + chr3_2:34136034-34136053 None:intergenic 45.0%
GTGTGTTCTCTTTCCAGCAA+TGG - chr3_2:34136052-34136071 Msa0403660:CDS 45.0%
AAGAAGAGAAGAGACGACAG+AGG - chr3_2:34136294-34136313 Msa0403660:intron 45.0%
AGAAGAGAAGAGACGACAGA+GGG - chr3_2:34136295-34136314 Msa0403660:intron 45.0%
TCCTACTCTGGTCGTCATAA+CGG - chr3_2:34136992-34137011 Msa0403660:intron 45.0%
GGTATAGCCACAAAGTTGAG+AGG + chr3_2:34137052-34137071 None:intergenic 45.0%
AGTGGGATAGCTGACATTTG+AGG - chr3_2:34137352-34137371 Msa0403660:five_prime_UTR 45.0%
GATAGCTGACATTTGAGGAC+AGG - chr3_2:34137357-34137376 Msa0403660:five_prime_UTR 45.0%
!! GCTTTGGGAAGTGTTGATAC+AGG - chr3_2:34137386-34137405 Msa0403660:five_prime_UTR 45.0%
!! TGGGAAGTGTTGATACAGGT+AGG - chr3_2:34137390-34137409 Msa0403660:five_prime_UTR 45.0%
!! GGGAAGTGTTGATACAGGTA+GGG - chr3_2:34137391-34137410 Msa0403660:five_prime_UTR 45.0%
GATACAGGTAGGGACAGTTA+AGG - chr3_2:34137401-34137420 Msa0403660:five_prime_UTR 45.0%
ACCAAGTGTCAGTGTCATGT+TGG + chr3_2:34137679-34137698 None:intergenic 45.0%
!! GAAAAAAAAAAAAAAAAAAA+AGG + chr3_2:34132677-34132696 None:intergenic 5.0%
!!! AATTTAATTTTAGTAATTAA+TGG + chr3_2:34136466-34136485 None:intergenic 5.0%
CGATATTGGAGAGAGCGAGA+AGG - chr3_2:34134067-34134086 Msa0403660:CDS 50.0%
! AGACCGTATGTTGATGGAGC+TGG - chr3_2:34134094-34134113 Msa0403660:CDS 50.0%
! GTATGTTGATGGAGCTGGAG+AGG - chr3_2:34134099-34134118 Msa0403660:CDS 50.0%
TCATCAATCCCTTGCAGCCA+AGG - chr3_2:34134181-34134200 Msa0403660:intron 50.0%
GCTTGCATCTGTCACACCAT+TGG - chr3_2:34134522-34134541 Msa0403660:intron 50.0%
AATGTGAGTGTCAGCAGCAC+AGG - chr3_2:34134655-34134674 Msa0403660:CDS 50.0%
TCCAAGTTTGCATGGGACTC+AGG - chr3_2:34134975-34134994 Msa0403660:CDS 50.0%
ACCTGAGTCCCATGCAAACT+TGG + chr3_2:34134979-34134998 None:intergenic 50.0%
AAGTTTGCATGGGACTCAGG+TGG - chr3_2:34134978-34134997 Msa0403660:CDS 50.0%
!! TGGTGAAAGAGCGCCTCTTT+CGG + chr3_2:34135298-34135317 None:intergenic 50.0%
TCAGGGGCAGTACTTGTATC+AGG + chr3_2:34135526-34135545 None:intergenic 50.0%
GACCTGATACGGCGAATTTC+AGG - chr3_2:34135883-34135902 Msa0403660:intron 50.0%
GATAACACTCGGTACAGTGC+TGG - chr3_2:34135905-34135924 Msa0403660:intron 50.0%
CGATGGGGTAAGCTTCAAAG+TGG - chr3_2:34136136-34136155 Msa0403660:intron 50.0%
CTCTTCTTCTCTCTGTTGCC+TGG + chr3_2:34136282-34136301 None:intergenic 50.0%
ATTGAGTTCCGTCGAGGTGT+AGG + chr3_2:34136938-34136957 None:intergenic 50.0%
TCCGTTATGACGACCAGAGT+AGG + chr3_2:34136996-34137015 None:intergenic 50.0%
! CACAAAGTTGAGAGGTGCAG+TGG + chr3_2:34137044-34137063 None:intergenic 50.0%
CACTGCACCTCTCAACTTTG+TGG - chr3_2:34137042-34137061 Msa0403660:CDS 50.0%
TTAAACTTGGGGAGGGGACT+CGG + chr3_2:34137113-34137132 None:intergenic 50.0%
ACATGGACAGTGAGACTGAG+TGG - chr3_2:34137334-34137353 Msa0403660:five_prime_UTR 50.0%
CATGGACAGTGAGACTGAGT+GGG - chr3_2:34137335-34137354 Msa0403660:five_prime_UTR 50.0%
GCCAACATGACACTGACACT+TGG - chr3_2:34137675-34137694 Msa0403660:five_prime_UTR 50.0%
GGTGATGTGGTGATTAGAGC+TGG - chr3_2:34137743-34137762 Msa0403660:five_prime_UTR 50.0%
GGAGCTGGAGAGGGAATGTT+TGG - chr3_2:34134109-34134128 Msa0403660:CDS 55.0%
CTCAGCTTCCTTGGCTGCAA+GGG + chr3_2:34134192-34134211 None:intergenic 55.0%
TCTCAGCTTCCTTGGCTGCA+AGG + chr3_2:34134193-34134212 None:intergenic 55.0%
!! CTTTCTGAAGTCGGTCCGAC+TGG + chr3_2:34134876-34134895 None:intergenic 55.0%
TTTGCAGGCTTCGGCAGAAG+TGG - chr3_2:34135405-34135424 Msa0403660:intron 55.0%
CGTGCAAATGGCAACAGCGT+CGG - chr3_2:34136884-34136903 Msa0403660:intron 55.0%
!! AATGGCAACAGCGTCGGCTA+TGG - chr3_2:34136890-34136909 Msa0403660:intron 55.0%
!! AACAGCGTCGGCTATGGCAA+CGG - chr3_2:34136896-34136915 Msa0403660:intron 55.0%
CTATGCCTCCTACACCTCGA+CGG - chr3_2:34136927-34136946 Msa0403660:intron 55.0%
CCTCGACGGAACTCAATGAG+CGG - chr3_2:34136941-34136960 Msa0403660:intron 55.0%
TAAACTTGGGGAGGGGACTC+GGG + chr3_2:34137112-34137131 None:intergenic 55.0%
GTGAGTGTCAGCAGCACAGG+TGG - chr3_2:34134658-34134677 Msa0403660:CDS 60.0%
GTCGGCTATGGCAACGGCAA+TGG - chr3_2:34136902-34136921 Msa0403660:intron 60.0%
GAGTTCCGTCGAGGTGTAGG+AGG + chr3_2:34136935-34136954 None:intergenic 60.0%
CCGCTCATTGAGTTCCGTCG+AGG + chr3_2:34136944-34136963 None:intergenic 60.0%
CACACACCACGCTCCTACTC+TGG - chr3_2:34136980-34136999 Msa0403660:intron 60.0%
TGACGACCAGAGTAGGAGCG+TGG + chr3_2:34136989-34137008 None:intergenic 60.0%
! ACTCGGTACAGTGCTGGGCG+AGG - chr3_2:34135911-34135930 Msa0403660:intron 65.0%
TTGGGGAGGGGACTCGGGTT+CGG + chr3_2:34137107-34137126 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34132441 34137766 34132441 ID=Msa0403660;Name=Msa0403660
chr3_2 mRNA 34132441 34137766 34132441 ID=Msa0403660-mRNA-1;Parent=Msa0403660;Name=Msa0403660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=685|1|1|1|0.90|0.83|12|539|608
chr3_2 exon 34132441 34132960 34132441 ID=Msa0403660-mRNA-1:exon:6799;Parent=Msa0403660-mRNA-1
chr3_2 exon 34133056 34133428 34133056 ID=Msa0403660-mRNA-1:exon:6798;Parent=Msa0403660-mRNA-1
chr3_2 exon 34133891 34133965 34133891 ID=Msa0403660-mRNA-1:exon:6797;Parent=Msa0403660-mRNA-1
chr3_2 exon 34134065 34134138 34134065 ID=Msa0403660-mRNA-1:exon:6796;Parent=Msa0403660-mRNA-1
chr3_2 exon 34134215 34134302 34134215 ID=Msa0403660-mRNA-1:exon:6795;Parent=Msa0403660-mRNA-1
chr3_2 exon 34134388 34134539 34134388 ID=Msa0403660-mRNA-1:exon:6794;Parent=Msa0403660-mRNA-1
chr3_2 exon 34134636 34134795 34134636 ID=Msa0403660-mRNA-1:exon:6793;Parent=Msa0403660-mRNA-1
chr3_2 exon 34134875 34135030 34134875 ID=Msa0403660-mRNA-1:exon:6792;Parent=Msa0403660-mRNA-1
chr3_2 exon 34135115 34135330 34135115 ID=Msa0403660-mRNA-1:exon:6791;Parent=Msa0403660-mRNA-1
chr3_2 exon 34135451 34135723 34135451 ID=Msa0403660-mRNA-1:exon:6790;Parent=Msa0403660-mRNA-1
chr3_2 exon 34135948 34136151 34135948 ID=Msa0403660-mRNA-1:exon:6789;Parent=Msa0403660-mRNA-1
chr3_2 exon 34137007 34137766 34137007 ID=Msa0403660-mRNA-1:exon:6788;Parent=Msa0403660-mRNA-1
chr3_2 five_prime_UTR 34137082 34137766 34137082 ID=Msa0403660-mRNA-1:five_prime_utr;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34137007 34137081 34137007 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34135948 34136151 34135948 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34135451 34135723 34135451 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34135115 34135330 34135115 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34134875 34135030 34134875 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34134636 34134795 34134636 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34134388 34134539 34134388 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34134215 34134302 34134215 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34134065 34134138 34134065 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34133891 34133965 34133891 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 CDS 34133075 34133428 34133075 ID=Msa0403660-mRNA-1:cds;Parent=Msa0403660-mRNA-1
chr3_2 three_prime_UTR 34133056 34133074 34133056 ID=Msa0403660-mRNA-1:three_prime_utr;Parent=Msa0403660-mRNA-1
chr3_2 three_prime_UTR 34132441 34132960 34132441 ID=Msa0403660-mRNA-1:three_prime_utr;Parent=Msa0403660-mRNA-1
Gene Sequence

>Msa0403660

ATGTTGGCCATTGGAAGTCCTATCACTAGTATCCATATAAGCACTACTTGCACTTCTTTGCTCAAAGAACTTGAGCAAATATGGAACGATATTGGAGAGAGCGAGAAGGACAAAGACCGTATGTTGATGGAGCTGGAGAGGGAATGTTTGGATGTTTATAGGAGAAAGGTTGACGAGGCTGCCAACATCAAAGCACGCTTTCATCAATCCCTTGCAGCCAAGGAAGCTGAGATTGCAACACTAATAGCTGCACTCGGGGAACATGATATGAGCTCACCGATTAAGATGGAAAAGAGATCTGCATCGCTGAAGGAGAAGCTTGCATCTGTCACACCATTGGTCGAAGAATTGAAGAAGAAAAAAGAAGAAAGGTTGAAACAGTTGGCAGATATTAAAACTCAAATAGAAAAGATAAGTGGTGAGATTTGTGGAATCCATCCGGTCAATGATAATGTGAGTGTCAGCAGCACAGGTGGTGTAGACGAACAAGACTTGTCTATTAGAAGACTTGATGAATATCAAACGCATCTTCGTAGTCTTCAAAAGGAAAAGTCGGACCGACTTCAGAAAGTCTTGCAATGTGTGAATGAGGTGCATTCTCTCTGTGGTGTTCTTGGATTGGATTTCGGCCAAACGGTAGATGATGTACATCCAAGTTTGCATGGGACTCAGGTGGAACAATCGACTAATATTAGCAATAGCACATTGGAAGGTCTAGAGAAGACCATTCTCAAGTTAAAAGCAGAAAGGAAATCTAGAGTACAGAAGTTGAAGGATGTTGTCGCTAACCTATTCGAACTTTGGAATTTGATGGACACTTCAAAAGAAGAGAGAAACTCTTTTCTGAGGAATACTTCTATTGTCACAACTTCAGAATCAGAAATCACCGAAAGAGGCGCTCTTTCACCAGAGATAATAGAGAAGGCTTCGGCAGAAGTGGAAAGACTTGCTAAACTAAAAGCGAGTAGAATGAAAGAACTCGTATTTAAGAAGAGGTCGGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCTGATACAAGTACTGCCCCTGAGAAAGCTAGTGCATTAATAGATTCTGGCTTGGTTGATCCTTGTGAACTATTAGCTAACATTGAAGCACAAATAGTAAAGGCAAAAGATGAAGCTTTGAGTAGAAGAGAAGTAACAGATAGGATTGATAAGTGGCTATTTGCTTGTGAAGAGGAAAATTGGCTCGACGAATATAGCCAAGATAACACTCGGTACAGTGCTGGGCGAGGTGCTCACATTAATCTGAAACGTGCAGAACGAGCAAGAGTAACTATAACCAAAATTCCAGCAATGGTTGACAATCTTATAAGCAAAACACTAGCATGGGAAGATGAAAAGAAGACTTGTTTTCTATACGATGGGGTACGTTTGGTGGAATTATTGGATGATTACAAACTGACCAGGCAACAGAGAGAAGAAGAGAAGAGACGACAGAGGGACCAAAAGAAGATGCAAGATCTACTCCTAAATCAAAAGGAAGCCATATATGGGTCTAAACCTAGTCCAAAAAAAACTAACAGCTTTAGAAAGACAAACGGTTATCGTGCAAATGGCAACAGCGTCGGCTATGGCAACGGCAATGGATCTATGCCTCCTACACCTCGACGGAACTCAATGAGCGGTACAACATCTGAACTACACACACCACGCTCCTACTCTGGTCGTCATAACGGATACTTCAGCGAAATGAGAAGATTGTCCACTGCACCTCTCAACTTTGTGGCTATACCTAAGGAAGATACAATGTCGTATAGTTGCAGTTCCGAACCCGAGTCCCCTCCCCAAGTTTAA

Protein sequence

>Msa0403660

MLAIGSPITSIHISTTCTSLLKELEQIWNDIGESEKDKDRMLMELERECLDVYRRKVDEAANIKARFHQSLAAKEAEIATLIAALGEHDMSSPIKMEKRSASLKEKLASVTPLVEELKKKKEERLKQLADIKTQIEKISGEICGIHPVNDNVSVSSTGGVDEQDLSIRRLDEYQTHLRSLQKEKSDRLQKVLQCVNEVHSLCGVLGLDFGQTVDDVHPSLHGTQVEQSTNISNSTLEGLEKTILKLKAERKSRVQKLKDVVANLFELWNLMDTSKEERNSFLRNTSIVTTSESEITERGALSPEIIEKASAEVERLAKLKASRMKELVFKKRSELEEICRLTHIEPDTSTAPEKASALIDSGLVDPCELLANIEAQIVKAKDEALSRREVTDRIDKWLFACEEENWLDEYSQDNTRYSAGRGAHINLKRAERARVTITKIPAMVDNLISKTLAWEDEKKTCFLYDGVRLVELLDDYKLTRQQREEEKRRQRDQKKMQDLLLNQKEAIYGSKPSPKKTNSFRKTNGYRANGNSVGYGNGNGSMPPTPRRNSMSGTTSELHTPRSYSGRHNGYFSEMRRLSTAPLNFVAIPKEDTMSYSCSSEPESPPQV*