AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108390 MtrunA17_Chr1g0164981 97.204 608 17 0 1 608 1 608 0.0 1223
Msa0108390 MtrunA17_Chr5g0444881 48.217 589 277 7 16 602 15 577 0.0 528
Msa0108390 MtrunA17_Chr6g0476051 51.060 519 236 7 15 529 15 519 1.68e-165 489
Msa0108390 MtrunA17_Chr1g0188201 43.449 603 311 8 15 605 14 598 5.45e-152 455
Msa0108390 MtrunA17_Chr8g0354131 40.778 591 302 7 15 595 13 565 3.30e-149 442
Msa0108390 MtrunA17_Chr3g0122591 39.716 564 308 9 1 551 1 545 3.68e-133 402
Msa0108390 MtrunA17_Chr7g0245851 41.697 542 287 5 12 553 364 876 1.56e-119 379
Msa0108390 MtrunA17_Chr8g0345241 35.795 528 293 9 2 516 1 495 6.81e-97 305
Msa0108390 MtrunA17_Chr4g0039561 53.846 52 24 0 27 78 146 197 2.08e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108390 AT2G01910.1 66.883 616 186 7 1 607 1 607 0.0 800
Msa0108390 AT1G14690.1 65.253 613 192 8 1 605 1 600 0.0 798
Msa0108390 AT1G14690.2 65.253 613 192 8 1 605 1 600 0.0 798
Msa0108390 AT2G01910.2 67.826 575 168 6 41 607 1 566 0.0 757
Msa0108390 AT5G55230.3 46.812 596 288 8 16 605 15 587 1.33e-174 508
Msa0108390 AT5G55230.1 46.812 596 288 8 16 605 15 587 1.33e-174 508
Msa0108390 AT4G26760.1 46.362 591 281 8 16 602 15 573 6.62e-174 506
Msa0108390 AT5G55230.2 44.800 625 287 9 16 605 15 616 2.60e-168 493
Msa0108390 AT2G38720.1 43.281 573 291 6 20 592 12 550 3.85e-142 424
Msa0108390 AT5G51600.1 43.958 571 293 6 11 577 10 557 1.21e-139 423
Msa0108390 AT3G60840.1 41.502 506 282 4 13 517 12 504 3.72e-130 397
Msa0108390 AT1G27920.1 38.587 552 321 8 1 541 1 545 3.29e-128 389
Msa0108390 AT5G62250.2 40.141 568 304 8 12 566 5 549 7.14e-112 346
Msa0108390 AT5G62250.1 40.141 568 304 8 12 566 5 549 7.14e-112 346
Msa0108390 AT1G27920.2 38.795 415 244 5 1 412 1 408 5.44e-95 298

Find 163 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGCAATACCTGGAATTT+TGG 0.152671 1_3:-19897544 None:intergenic
TTTCTTGTTTAACTCTTAAA+AGG 0.152871 1_3:+19894572 Msa0108390:five_prime_UTR
CATTCTCTCTGTGGTGTTCT+TGG 0.163659 1_3:+19896482 Msa0108390:CDS
AACTTAACTTCCTACAATTA+TGG 0.195411 1_3:-19899126 None:intergenic
GGGAATGTTTGGATGTTTAT+AGG 0.201011 1_3:+19895683 Msa0108390:CDS
GTGAGAGTAGAGTGTGAAAA+AGG 0.209714 1_3:+19894646 Msa0108390:five_prime_UTR
GTAGATCTTGCATCTTCTTT+TGG 0.235244 1_3:-19898344 None:intergenic
AATCAAAAGGAAGCCATATA+TGG 0.244001 1_3:+19898372 Msa0108390:CDS
TAAGAAGAGGTCGGAGTTAG+AGG 0.273452 1_3:+19897037 Msa0108390:CDS
TTGCTTGTGAAGAGGAAAAT+TGG 0.274911 1_3:+19897342 Msa0108390:CDS
GGTACGTTTGGTGGAATTAT+TGG 0.281304 1_3:+19897804 Msa0108390:intron
AAGTGCAAGTAGTGCTTATA+TGG 0.309402 1_3:-19894720 None:intergenic
CTCTTCTTCTCTCTGTTGCC+TGG 0.313221 1_3:-19897842 None:intergenic
AAGGTGAAAGCTTTGGTTAA+AGG 0.315024 1_3:-19894469 None:intergenic
TCAGGGGCAGTACTTGTATC+AGG 0.319336 1_3:-19897086 None:intergenic
ATTCGAACTTTGGAATTTGA+TGG 0.329583 1_3:+19896763 Msa0108390:CDS
AGGTGAAAGCTTTGGTTAAA+GGG 0.339792 1_3:-19894468 None:intergenic
CATGTTGTGTGCAGCAAATA+TGG 0.340690 1_3:+19895605 Msa0108390:intron
ATTATTATTTGTTGGAGCTT+TGG 0.349499 1_3:-19894282 None:intergenic
ACTAGGTTTAGACCCATATA+TGG 0.358084 1_3:-19898385 None:intergenic
CAGCAAATATGGAACGATAT+TGG 0.368433 1_3:+19895616 Msa0108390:intron
TGAGGACAGGAAATTAGCTT+TGG 0.374600 1_3:+19898933 Msa0108390:three_prime_UTR
TGACTATATGTGTGTGTTGT+GGG 0.377016 1_3:+19899009 Msa0108390:three_prime_UTR
TCTCTGTGGTGTTCTTGGAT+TGG 0.377879 1_3:+19896487 Msa0108390:CDS
TCGCTAACCTATTCGAACTT+TGG 0.382162 1_3:+19896753 Msa0108390:CDS
GGAGCTGGAGAGGGAATGTT+TGG 0.387268 1_3:+19895672 Msa0108390:CDS
ATTAATGCACTAGCTTTCTC+AGG 0.388767 1_3:-19897104 None:intergenic
GGCAAAGTATTGTATTGAAA+TGG 0.388997 1_3:-19894075 None:intergenic
TCAAATTCCAAAGTTCGAAT+AGG 0.392179 1_3:-19896760 None:intergenic
TGGTGAAAGAGCGCCTCTTT+CGG 0.394133 1_3:-19896858 None:intergenic
GCTAGTGCATTAATAGATTC+TGG 0.395752 1_3:+19897113 Msa0108390:CDS
TGTTGCAATCTCAGCTTCCT+TGG 0.397291 1_3:-19895761 None:intergenic
ACCTGAGTCCCATGCAAACT+TGG 0.397911 1_3:-19896539 None:intergenic
TAAACCTTCTCTATTATCTC+TGG 0.399001 1_3:-19896878 None:intergenic
CACTGCACCTCTCAACTTTG+TGG 0.407205 1_3:+19898605 Msa0108390:CDS
TTAAACTTGGGGAGGGGACT+CGG 0.411081 1_3:-19898673 None:intergenic
AAGAAGAGTTAAGAAGGAAC+AGG 0.422329 1_3:-19894383 None:intergenic
TTGGGGAGGGGACTCGGGTT+CGG 0.422995 1_3:-19898667 None:intergenic
AGATCTAAAGGTGAAAGCTT+TGG 0.423694 1_3:-19894476 None:intergenic
GGTGTTCTTGGATTGGATTT+CGG 0.424164 1_3:+19896494 Msa0108390:CDS
CTCAGCTTCCTTGGCTGCAA+GGG 0.426652 1_3:-19895752 None:intergenic
TTCTTCAATTCTTCGACCAA+TGG 0.430753 1_3:-19896101 None:intergenic
TTTGGATGTTTATAGGAGAA+AGG 0.430994 1_3:+19895690 Msa0108390:CDS
GTAACTATAACCAAAATTCC+AGG 0.440102 1_3:+19897534 Msa0108390:CDS
TTGCCATGATTATTATTTGT+TGG 0.442236 1_3:-19894290 None:intergenic
CACACACCACGCTCCTACTC+TGG 0.447423 1_3:+19898543 Msa0108390:CDS
TAAACTTGGGGAGGGGACTC+GGG 0.452043 1_3:-19898672 None:intergenic
ATGTCATATGTAGGTACGTT+TGG 0.453660 1_3:+19897792 Msa0108390:intron
GATAACACTCGGTACAGTGC+TGG 0.455300 1_3:+19897468 Msa0108390:CDS
TCGTAGTCTTCAAAAGGAAA+AGG 0.455890 1_3:+19896298 Msa0108390:CDS
GAAATTTATATAGATTAAGA+TGG 0.457640 1_3:+19896034 Msa0108390:intron
CTTATATGGATACTAGTGAT+AGG 0.457710 1_3:-19894706 None:intergenic
GAGGACAGGAAATTAGCTTT+GGG 0.458226 1_3:+19898934 Msa0108390:three_prime_UTR
GGACAAAGACCGTATGTTGA+TGG 0.458837 1_3:+19895651 Msa0108390:CDS
GATGTACATCATCTACCGTT+TGG 0.462046 1_3:-19896517 None:intergenic
ATCAAAAGGAAGCCATATAT+GGG 0.473492 1_3:+19898373 Msa0108390:CDS
GTAGAAGAGAAGTAACAGAT+AGG 0.475843 1_3:+19897303 Msa0108390:CDS
GCTTTGGGAAGTGTTGATAC+AGG 0.476414 1_3:+19898949 Msa0108390:three_prime_UTR
AAGATAAGTGGTGAGATTTG+TGG 0.477858 1_3:+19896176 Msa0108390:CDS
TACGACATTGTATCTTCCTT+AGG 0.478785 1_3:-19898633 None:intergenic
TTCTTTGCTCAAAGAACTTG+AGG 0.479736 1_3:+19894741 Msa0108390:CDS
ACTATTCACAAGGTTTGCTC+TGG 0.480492 1_3:-19898846 None:intergenic
AGAAACATTAACAGATCTAA+AGG 0.482302 1_3:-19894488 None:intergenic
GCTCCAACAAATAATAATCA+TGG 0.482616 1_3:+19894287 Msa0108390:five_prime_UTR
AGATCTACTCCTAAATCAAA+AGG 0.486123 1_3:+19898359 Msa0108390:CDS
TCATCAATCCCTTGCAGCCA+AGG 0.486920 1_3:+19895744 Msa0108390:CDS
TCCTACTCTGGTCGTCATAA+CGG 0.487167 1_3:+19898555 Msa0108390:CDS
TTTGGTGTATAATGTATAGT+TGG 0.487323 1_3:-19894264 None:intergenic
GAATCAGAAATCACCGAAAG+AGG 0.488175 1_3:+19896845 Msa0108390:CDS
TTGACTATATGTGTGTGTTG+TGG 0.488446 1_3:+19899008 Msa0108390:three_prime_UTR
TTCTTGTTTAACTCTTAAAA+GGG 0.493783 1_3:+19894573 Msa0108390:five_prime_UTR
AGACCGTATGTTGATGGAGC+TGG 0.494507 1_3:+19895657 Msa0108390:CDS
TAAGAGAAGAAGAGTTAAGA+AGG 0.495250 1_3:-19894389 None:intergenic
AATGGCAACAGCGTCGGCTA+TGG 0.499985 1_3:+19898453 Msa0108390:CDS
TCCAAGTTTGCATGGGACTC+AGG 0.500735 1_3:+19896538 Msa0108390:CDS
GCATCTTCGTAGTCTTCAAA+AGG 0.501344 1_3:+19896292 Msa0108390:CDS
ACAAACGGTTATCGTGCAAA+TGG 0.503283 1_3:+19898435 Msa0108390:CDS
CAACTTTGTGGCTATACCTA+AGG 0.504876 1_3:+19898617 Msa0108390:CDS
CTGTGAATAATGTTGGCCAT+TGG 0.523179 1_3:+19894679 Msa0108390:exon
AGAAGAAAGGTTGAAACAGT+TGG 0.524504 1_3:+19896130 Msa0108390:CDS
ATTGAGTTCCGTCGAGGTGT+AGG 0.524668 1_3:-19898498 None:intergenic
TTTGCAGGCTTCGGCAGAAG+TGG 0.524852 1_3:+19896968 Msa0108390:intron
TCTCAGCTTCCTTGGCTGCA+AGG 0.526154 1_3:-19895753 None:intergenic
AAGGAAATCTAGAGTACAGA+AGG 0.531486 1_3:+19896634 Msa0108390:CDS
GGTGATGTGGTGATTAGAGC+TGG 0.532649 1_3:+19899306 Msa0108390:three_prime_UTR
GATGTACATCCAAGTTTGCA+TGG 0.533457 1_3:+19896530 Msa0108390:CDS
AATGTGTAAAGAGGCAATGT+AGG 0.533685 1_3:-19894115 None:intergenic
ATAGATTCTGTGAATAATGT+TGG 0.534076 1_3:+19894672 Msa0108390:exon
AGTGGGATAGCTGACATTTG+AGG 0.535818 1_3:+19898915 Msa0108390:three_prime_UTR
AACAGCGTCGGCTATGGCAA+CGG 0.537538 1_3:+19898459 Msa0108390:CDS
AAGAAGAGAAGAGACGACAG+AGG 0.537947 1_3:+19897857 Msa0108390:CDS
AACAGCTTTAGAAAGACAAA+CGG 0.538225 1_3:+19898420 Msa0108390:CDS
ACACTCACATTATCATTGAC+CGG 0.539021 1_3:-19896206 None:intergenic
GCCAACATGACACTGACACT+TGG 0.540164 1_3:+19899238 Msa0108390:three_prime_UTR
GCTTGCATCTGTCACACCAT+TGG 0.541601 1_3:+19896085 Msa0108390:CDS
GTCGGCTATGGCAACGGCAA+TGG 0.545576 1_3:+19898465 Msa0108390:CDS
TAAAGAGGCAATGTAGGAGC+AGG 0.546206 1_3:-19894109 None:intergenic
AAAATTATGTGTTGGTGATG+TGG 0.548072 1_3:+19899293 Msa0108390:three_prime_UTR
GATACAGGTAGGGACAGTTA+AGG 0.549200 1_3:+19898964 Msa0108390:three_prime_UTR
TTCACCAGAGATAATAGAGA+AGG 0.551344 1_3:+19896874 Msa0108390:CDS
CATTGAAGCACAAATAGTAA+AGG 0.552349 1_3:+19897262 Msa0108390:CDS
TCATATGTAGGTACGTTTGG+TGG 0.552696 1_3:+19897795 Msa0108390:intron
ACTCAAATAGAAAAGATAAG+TGG 0.553343 1_3:+19896164 Msa0108390:CDS
TATAAGCAAAACACTAGCAT+GGG 0.553893 1_3:+19897648 Msa0108390:CDS
AATGTGAGTGTCAGCAGCAC+AGG 0.555259 1_3:+19896218 Msa0108390:CDS
TGGATTGGATTTCGGCCAAA+CGG 0.556812 1_3:+19896502 Msa0108390:CDS
CAACACTAATAGCTGCACTC+GGG 0.560451 1_3:+19895779 Msa0108390:CDS
AAAGAGATCTGCATCGCTGA+AGG 0.560647 1_3:+19896058 Msa0108390:CDS
AAGAACTCGTATTTAAGAAG+AGG 0.561215 1_3:+19897024 Msa0108390:CDS
TCACATTATCATTGACCGGA+TGG 0.564269 1_3:-19896202 None:intergenic
ATAACACTCGGTACAGTGCT+GGG 0.566360 1_3:+19897469 Msa0108390:CDS
TTAATGCACTAGCTTTCTCA+GGG 0.568025 1_3:-19897103 None:intergenic
TGAGATTTGTGGAATCCATC+CGG 0.568147 1_3:+19896187 Msa0108390:CDS
TTATAAGCAAAACACTAGCA+TGG 0.571122 1_3:+19897647 Msa0108390:CDS
TTCTCAAGTTAAAAGCAGAA+AGG 0.571810 1_3:+19896615 Msa0108390:CDS
GTGGCTATTTGCTTGTGAAG+AGG 0.575177 1_3:+19897334 Msa0108390:CDS
GATAGCTGACATTTGAGGAC+AGG 0.575977 1_3:+19898920 Msa0108390:three_prime_UTR
TTTGAACTTAAACTTGGGGA+GGG 0.579865 1_3:-19898680 None:intergenic
CGTGCAAATGGCAACAGCGT+CGG 0.582083 1_3:+19898447 Msa0108390:CDS
GGGAAGTGTTGATACAGGTA+GGG 0.584185 1_3:+19898954 Msa0108390:three_prime_UTR
CAAGCAACATACTATTCACA+AGG 0.584516 1_3:-19898856 None:intergenic
GAGTTCCGTCGAGGTGTAGG+AGG 0.590544 1_3:-19898495 None:intergenic
TATGTTGATGGAGCTGGAGA+GGG 0.590639 1_3:+19895663 Msa0108390:CDS
GTATGTTGATGGAGCTGGAG+AGG 0.593155 1_3:+19895662 Msa0108390:CDS
GCAACACTAATAGCTGCACT+CGG 0.600020 1_3:+19895778 Msa0108390:CDS
ATGAAAGCGTGCTTTGATGT+TGG 0.600513 1_3:-19895725 None:intergenic
TCTCCAGCTCCATCAACATA+CGG 0.601579 1_3:-19895660 None:intergenic
ATGTATGTGTATTTATAACA+CGG 0.602805 1_3:+19899165 Msa0108390:three_prime_UTR
ATTAGCAATAGCACATTGGA+AGG 0.604701 1_3:+19896578 Msa0108390:CDS
TGGGAAGTGTTGATACAGGT+AGG 0.605766 1_3:+19898953 Msa0108390:three_prime_UTR
AATGAGGTGCATTCTCTCTG+TGG 0.607233 1_3:+19896473 Msa0108390:CDS
TTGAACTTAAACTTGGGGAG+GGG 0.607474 1_3:-19898679 None:intergenic
ACTCGGTACAGTGCTGGGCG+AGG 0.608408 1_3:+19897474 Msa0108390:CDS
ATGTACATCCAAGTTTGCAT+GGG 0.615491 1_3:+19896531 Msa0108390:CDS
TAACAGATAGGATTGATAAG+TGG 0.617891 1_3:+19897315 Msa0108390:CDS
ATTGCAAGACTTTCTGAAGT+CGG 0.617924 1_3:-19896445 None:intergenic
ATGTTAGCTAATAGTTCACA+AGG 0.618604 1_3:-19897242 None:intergenic
TGGATGATTACAAACTGACC+AGG 0.618666 1_3:+19897824 Msa0108390:CDS
CGATATTGGAGAGAGCGAGA+AGG 0.619852 1_3:+19895630 Msa0108390:CDS
TAGGAGCAGGTAAAGAGAAG+AGG 0.622831 1_3:-19894096 None:intergenic
ACTCGTATTTAAGAAGAGGT+CGG 0.627648 1_3:+19897028 Msa0108390:CDS
TAATATTAGCAATAGCACAT+TGG 0.628365 1_3:+19896574 Msa0108390:CDS
CTATGCCTCCTACACCTCGA+CGG 0.629673 1_3:+19898490 Msa0108390:CDS
AGAAGAGAAGAGACGACAGA+GGG 0.631005 1_3:+19897858 Msa0108390:CDS
CACAAAGTTGAGAGGTGCAG+TGG 0.632051 1_3:-19898604 None:intergenic
ACATGGACAGTGAGACTGAG+TGG 0.635850 1_3:+19898897 Msa0108390:three_prime_UTR
AGTCTTGCAATGTGTGAATG+AGG 0.639710 1_3:+19896457 Msa0108390:CDS
AACACTAATAGCTGCACTCG+GGG 0.641813 1_3:+19895780 Msa0108390:CDS
GGAACATGATATGAGCTCAC+CGG 0.642778 1_3:+19895801 Msa0108390:CDS
ACCAAGTGTCAGTGTCATGT+TGG 0.642997 1_3:-19899239 None:intergenic
AAGTTTGCATGGGACTCAGG+TGG 0.643834 1_3:+19896541 Msa0108390:CDS
CATGGACAGTGAGACTGAGT+GGG 0.651814 1_3:+19898898 Msa0108390:three_prime_UTR
ACTAGTGATAGGACTTCCAA+TGG 0.653569 1_3:-19894695 None:intergenic
TCCGTTATGACGACCAGAGT+AGG 0.653657 1_3:-19898556 None:intergenic
GTGAGTGTCAGCAGCACAGG+TGG 0.659272 1_3:+19896221 Msa0108390:CDS
GGTATAGCCACAAAGTTGAG+AGG 0.671097 1_3:-19898612 None:intergenic
AATAAGCTGAGATATATACA+TGG 0.679152 1_3:+19898880 Msa0108390:three_prime_UTR
GCGAATTTCAGGATAACACT+CGG 0.680323 1_3:+19897457 Msa0108390:intron
CCGCTCATTGAGTTCCGTCG+AGG 0.692714 1_3:-19898504 None:intergenic
TGACGACCAGAGTAGGAGCG+TGG 0.694307 1_3:-19898549 None:intergenic
TTATAGGAGAAAGGTTGACG+AGG 0.725409 1_3:+19895699 Msa0108390:CDS
CCTCGACGGAACTCAATGAG+CGG 0.735513 1_3:+19898504 Msa0108390:CDS
TAATGCACTAGCTTTCTCAG+GGG 0.766836 1_3:-19897102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGGAA+GGG - chr1_3:19894234-19894253 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAAGGA+AGG - chr1_3:19894235-19894254 None:intergenic 10.0%
!!! TAATTACTTTTTTTTTTTGA+AGG + chr1_3:19898146-19898165 Msa0108390:intron 10.0%
!! TATATTTAACAAATGAAAAT+TGG - chr1_3:19898731-19898750 None:intergenic 10.0%
!!! AAAAGATAATGGTATTTTTA+GGG - chr1_3:19894185-19894204 None:intergenic 15.0%
!!! AAAAAGATAATGGTATTTTT+AGG - chr1_3:19894186-19894205 None:intergenic 15.0%
!!! TTTTATTGTTAATTTTCATG+TGG + chr1_3:19895164-19895183 Msa0108390:intron 15.0%
!! AATTGAAAATTTCACTATAT+TGG + chr1_3:19895215-19895234 Msa0108390:intron 15.0%
!!! TAAAAAATCAATTTTATGCA+TGG + chr1_3:19895857-19895876 Msa0108390:intron 15.0%
!! GAAATTTATATAGATTAAGA+TGG + chr1_3:19896034-19896053 Msa0108390:intron 15.0%
!! ATAATAAGACTAAAACATAA+GGG - chr1_3:19896676-19896695 None:intergenic 15.0%
!! AATAATAAGACTAAAACATA+AGG - chr1_3:19896677-19896696 None:intergenic 15.0%
!!! TTTAAAAAGTACAATTAAGA+GGG - chr1_3:19896713-19896732 None:intergenic 15.0%
!!! TTTTAAAAAGTACAATTAAG+AGG - chr1_3:19896714-19896733 None:intergenic 15.0%
!!! TTTTTGAAACAAAGAAAAAA+TGG - chr1_3:19899277-19899296 None:intergenic 15.0%
!!! TTTCTTTTGTTTCAAAACAA+TGG + chr1_3:19894506-19894525 Msa0108390:five_prime_UTR 20.0%
!!! TTTCTTGTTTAACTCTTAAA+AGG + chr1_3:19894572-19894591 Msa0108390:five_prime_UTR 20.0%
!!! TTCTTGTTTAACTCTTAAAA+GGG + chr1_3:19894573-19894592 Msa0108390:five_prime_UTR 20.0%
!!! TGTAGGTTATTTTATTGTAA+GGG + chr1_3:19895047-19895066 Msa0108390:intron 20.0%
!!! AATTTCACTATATTGGTTTT+TGG + chr1_3:19895222-19895241 Msa0108390:intron 20.0%
!! AAAAAAGCGAATCAATAATA+TGG - chr1_3:19895441-19895460 None:intergenic 20.0%
!! GAAGTAACAAATAAAGAAAA+AGG - chr1_3:19895557-19895576 None:intergenic 20.0%
!!! TACTTCAATTTTTTTACCTT+CGG + chr1_3:19895571-19895590 Msa0108390:intron 20.0%
!! TTGATGTATTAATATACTTG+AGG + chr1_3:19895990-19896009 Msa0108390:intron 20.0%
!!! TTAAAAAGTACAATTAAGAG+GGG - chr1_3:19896712-19896731 None:intergenic 20.0%
!! AAACATGGAAAATATATGAA+AGG - chr1_3:19896935-19896954 None:intergenic 20.0%
!! TTACACAGGTAATAAATTAA+GGG - chr1_3:19898061-19898080 None:intergenic 20.0%
!! TAAAACTAATTACTTAACCT+TGG + chr1_3:19898171-19898190 Msa0108390:intron 20.0%
!! TAAGTTCAAAAAACCAAAAA+TGG + chr1_3:19898693-19898712 Msa0108390:exon 20.0%
!! TATATAGTTCTTTAGTCAAA+AGG + chr1_3:19898749-19898768 Msa0108390:intron 20.0%
!! ATATAGTTCTTTAGTCAAAA+GGG + chr1_3:19898750-19898769 Msa0108390:intron 20.0%
!!! TTATTTTGATCCATAATTGT+AGG + chr1_3:19899116-19899135 Msa0108390:three_prime_UTR 20.0%
!! ATGTATGTGTATTTATAACA+CGG + chr1_3:19899165-19899184 Msa0108390:three_prime_UTR 20.0%
!! TTGTTTCAAAAATTATGTGT+TGG + chr1_3:19899285-19899304 Msa0108390:three_prime_UTR 20.0%
!!! ATAATGGTATTTTTAGGGTT+TGG - chr1_3:19894180-19894199 None:intergenic 25.0%
! AGATGCAAAGAAAAAGATAA+TGG - chr1_3:19894196-19894215 None:intergenic 25.0%
!! TTTGGTGTATAATGTATAGT+TGG - chr1_3:19894267-19894286 None:intergenic 25.0%
!! ATTATTATTTGTTGGAGCTT+TGG - chr1_3:19894285-19894304 None:intergenic 25.0%
! TTGCCATGATTATTATTTGT+TGG - chr1_3:19894293-19894312 None:intergenic 25.0%
!!! AACAGGATTTGTTTGTTTTT+AGG - chr1_3:19894369-19894388 None:intergenic 25.0%
! TTTCAGAAAAAGAAAGTAAC+AGG - chr1_3:19894421-19894440 None:intergenic 25.0%
! AGAAACATTAACAGATCTAA+AGG - chr1_3:19894491-19894510 None:intergenic 25.0%
! ATAGATTCTGTGAATAATGT+TGG + chr1_3:19894672-19894691 Msa0108390:exon 25.0%
!!! GTGTTTTTTTCAAAATGATG+AGG + chr1_3:19894812-19894831 Msa0108390:intron 25.0%
! GTTAGAGAATAACACAAAAT+AGG - chr1_3:19894944-19894963 None:intergenic 25.0%
!!! TTTAAAAGAGAAAGCACTTA+TGG + chr1_3:19895012-19895031 Msa0108390:intron 25.0%
!!! CTGTAGGTTATTTTATTGTA+AGG + chr1_3:19895046-19895065 Msa0108390:intron 25.0%
!!! GTAGGTTATTTTATTGTAAG+GGG + chr1_3:19895048-19895067 Msa0108390:intron 25.0%
!!! TAGGTTATTTTATTGTAAGG+GGG + chr1_3:19895049-19895068 Msa0108390:intron 25.0%
!!! AAAAATGACTTTTTCAACTC+AGG - chr1_3:19895109-19895128 None:intergenic 25.0%
!!! TGGTTTTTGGTAACAAATTT+TGG + chr1_3:19895235-19895254 Msa0108390:intron 25.0%
! TACCAATTCAGTAGTTAATA+TGG + chr1_3:19895262-19895281 Msa0108390:intron 25.0%
! ACCAATTCAGTAGTTAATAT+GGG + chr1_3:19895263-19895282 Msa0108390:intron 25.0%
! GAAAATTCATGATAAAGTGA+TGG + chr1_3:19895475-19895494 Msa0108390:intron 25.0%
! CAAGTCATTTATGTATTTAC+CGG - chr1_3:19895823-19895842 None:intergenic 25.0%
!! AAAATCAATTTTATGCATGG+TGG + chr1_3:19895860-19895879 Msa0108390:intron 25.0%
! AAAAACGCGCAAAATTATAA+AGG - chr1_3:19895903-19895922 None:intergenic 25.0%
! TGAAGAAGAAAAAAGAAGAA+AGG + chr1_3:19896117-19896136 Msa0108390:CDS 25.0%
! ACTCAAATAGAAAAGATAAG+TGG + chr1_3:19896164-19896183 Msa0108390:CDS 25.0%
! TAATATTAGCAATAGCACAT+TGG + chr1_3:19896574-19896593 Msa0108390:CDS 25.0%
!! TAAAAAGTACAATTAAGAGG+GGG - chr1_3:19896711-19896730 None:intergenic 25.0%
!!! CTTTTTAAAAATGCAGTTGA+AGG + chr1_3:19896724-19896743 Msa0108390:intron 25.0%
! ATGAAAGGAAAAAATGATGA+TGG - chr1_3:19896920-19896939 None:intergenic 25.0%
! AAATTCATGTTAATGCAACA+GGG - chr1_3:19897145-19897164 None:intergenic 25.0%
! TGATTGTTAATGTCATATGT+AGG + chr1_3:19897783-19897802 Msa0108390:intron 25.0%
! TAGTACATAAGATCAATTTG+AGG - chr1_3:19897932-19897951 None:intergenic 25.0%
!! CTGACATAGAAGAAATATTT+TGG + chr1_3:19897968-19897987 Msa0108390:intron 25.0%
!!! TGTGATTTTTTCTTACAAAC+AGG - chr1_3:19897995-19898014 None:intergenic 25.0%
! CTTACACAGGTAATAAATTA+AGG - chr1_3:19898062-19898081 None:intergenic 25.0%
! AATTTATTACCTGTGTAAGT+TGG + chr1_3:19898063-19898082 Msa0108390:intron 25.0%
!!! TTTTCTGTTTTTGATCTCAA+AGG + chr1_3:19898320-19898339 Msa0108390:intron 25.0%
!!! CTAAAGCTGTTAGTTTTTTT+TGG - chr1_3:19898411-19898430 None:intergenic 25.0%
!!! GTTTTTTGAACTTAAACTTG+GGG - chr1_3:19898687-19898706 None:intergenic 25.0%
!!! GGTTTTTTGAACTTAAACTT+GGG - chr1_3:19898688-19898707 None:intergenic 25.0%
!!! TGGTTTTTTGAACTTAAACT+TGG - chr1_3:19898689-19898708 None:intergenic 25.0%
! TTCAAAAAACCAAAAATGGT+AGG + chr1_3:19898697-19898716 Msa0108390:intron 25.0%
! AATAAGCTGAGATATATACA+TGG + chr1_3:19898880-19898899 Msa0108390:three_prime_UTR 25.0%
! AACTTAACTTCCTACAATTA+TGG - chr1_3:19899129-19899148 None:intergenic 25.0%
!! GGCAAAGTATTGTATTGAAA+TGG - chr1_3:19894078-19894097 None:intergenic 30.0%
GCAAAAATGAATGTGTAAAG+AGG - chr1_3:19894127-19894146 None:intergenic 30.0%
GCTCCAACAAATAATAATCA+TGG + chr1_3:19894287-19894306 Msa0108390:five_prime_UTR 30.0%
TAGGAGAGAGAAAAATGAAA+AGG - chr1_3:19894350-19894369 None:intergenic 30.0%
TAAGAGAAGAAGAGTTAAGA+AGG - chr1_3:19894392-19894411 None:intergenic 30.0%
!!! TCTTGAATTGTGTTGTTTTG+AGG + chr1_3:19894609-19894628 Msa0108390:five_prime_UTR 30.0%
CTTATATGGATACTAGTGAT+AGG - chr1_3:19894709-19894728 None:intergenic 30.0%
GAGAAGAAACAAAACATCAT+TGG - chr1_3:19894966-19894985 None:intergenic 30.0%
!!! ATGATGTTTTGTTTCTTCTC+AGG + chr1_3:19894966-19894985 Msa0108390:intron 30.0%
!! AGAAAGCACTTATGGTTATA+GGG + chr1_3:19895020-19895039 Msa0108390:intron 30.0%
! TATTTTATTGTAAGGGGGAA+AGG + chr1_3:19895054-19895073 Msa0108390:intron 30.0%
! ATTTTATTGTAAGGGGGAAA+GGG + chr1_3:19895055-19895074 Msa0108390:intron 30.0%
TCCCATATTAACTACTGAAT+TGG - chr1_3:19895267-19895286 None:intergenic 30.0%
!!! TATGGGATTTTAGTTTGACT+TGG + chr1_3:19895280-19895299 Msa0108390:intron 30.0%
TATGCAAAGTCTATCCTATT+TGG - chr1_3:19895363-19895382 None:intergenic 30.0%
TATAGAATGAGTCTCTTGAT+TGG + chr1_3:19895381-19895400 Msa0108390:intron 30.0%
TTTGGATGTTTATAGGAGAA+AGG + chr1_3:19895690-19895709 Msa0108390:CDS 30.0%
!! TCAATCTACCTATTTTGAGA+AGG + chr1_3:19895949-19895968 Msa0108390:intron 30.0%
!! CAATCTACCTATTTTGAGAA+GGG + chr1_3:19895950-19895969 Msa0108390:intron 30.0%
AATACATCAAAAAGCTTTCG+TGG - chr1_3:19895980-19895999 None:intergenic 30.0%
AATAAATGAAAGCTCTTCGA+TGG + chr1_3:19896338-19896357 Msa0108390:intron 30.0%
CTGGAAGAAAAAAAAAAGCA+CGG - chr1_3:19896420-19896439 None:intergenic 30.0%
!!! GCTTTTTTTTTTCTTCCAGT+CGG + chr1_3:19896421-19896440 Msa0108390:intron 30.0%
!!! TTCTGCTTTTAACTTGAGAA+TGG - chr1_3:19896615-19896634 None:intergenic 30.0%
TTCTCAAGTTAAAAGCAGAA+AGG + chr1_3:19896615-19896634 Msa0108390:CDS 30.0%
TCAAATTCCAAAGTTCGAAT+AGG - chr1_3:19896763-19896782 None:intergenic 30.0%
!! ATTCGAACTTTGGAATTTGA+TGG + chr1_3:19896763-19896782 Msa0108390:CDS 30.0%
TAAACCTTCTCTATTATCTC+TGG - chr1_3:19896881-19896900 None:intergenic 30.0%
AAGAACTCGTATTTAAGAAG+AGG + chr1_3:19897024-19897043 Msa0108390:CDS 30.0%
CAAATTCATGTTAATGCAAC+AGG - chr1_3:19897146-19897165 None:intergenic 30.0%
ATGTTAGCTAATAGTTCACA+AGG - chr1_3:19897245-19897264 None:intergenic 30.0%
CATTGAAGCACAAATAGTAA+AGG + chr1_3:19897262-19897281 Msa0108390:CDS 30.0%
TAACAGATAGGATTGATAAG+TGG + chr1_3:19897315-19897334 Msa0108390:CDS 30.0%
GTAACTATAACCAAAATTCC+AGG + chr1_3:19897534-19897553 Msa0108390:CDS 30.0%
TGGAACTTTCAACAACAAAT+AGG - chr1_3:19897577-19897596 None:intergenic 30.0%
TTATAAGCAAAACACTAGCA+TGG + chr1_3:19897647-19897666 Msa0108390:CDS 30.0%
TATAAGCAAAACACTAGCAT+GGG + chr1_3:19897648-19897667 Msa0108390:CDS 30.0%
!! AAGACTTGTTTTCTATACGA+TGG + chr1_3:19897682-19897701 Msa0108390:CDS 30.0%
!! AGACTTGTTTTCTATACGAT+GGG + chr1_3:19897683-19897702 Msa0108390:CDS 30.0%
GTGAAAACCAGAAATAACTA+TGG - chr1_3:19897726-19897745 None:intergenic 30.0%
TAAAAATAACTCTGCGAAGA+CGG - chr1_3:19897748-19897767 None:intergenic 30.0%
ATAGGAAAATATGGGCAAAA+AGG - chr1_3:19897892-19897911 None:intergenic 30.0%
GGATGATCATAGGAAAATAT+GGG - chr1_3:19897900-19897919 None:intergenic 30.0%
ATCAATTTGAGGACAAACAA+CGG - chr1_3:19897921-19897940 None:intergenic 30.0%
! ATGTACTATTTTACTCCCTT+TGG + chr1_3:19897944-19897963 Msa0108390:intron 30.0%
GTGTAGAACATTTAATGTGA+TGG + chr1_3:19898085-19898104 Msa0108390:intron 30.0%
AAAAACAGAAAACCAGAAGT+GGG - chr1_3:19898312-19898331 None:intergenic 30.0%
AGATCTACTCCTAAATCAAA+AGG + chr1_3:19898359-19898378 Msa0108390:CDS 30.0%
!!! ATATGGCTTCCTTTTGATTT+AGG - chr1_3:19898371-19898390 None:intergenic 30.0%
AATCAAAAGGAAGCCATATA+TGG + chr1_3:19898372-19898391 Msa0108390:CDS 30.0%
ATCAAAAGGAAGCCATATAT+GGG + chr1_3:19898373-19898392 Msa0108390:CDS 30.0%
!!! CTGTTAGTTTTTTTTGGACT+AGG - chr1_3:19898405-19898424 None:intergenic 30.0%
!! AACAGCTTTAGAAAGACAAA+CGG + chr1_3:19898420-19898439 Msa0108390:CDS 30.0%
! GAAATACAACCTACCATTTT+TGG - chr1_3:19898709-19898728 None:intergenic 30.0%
!!! CTGGTTTTAACAATGTTTAC+AGG - chr1_3:19898830-19898849 None:intergenic 30.0%
!! AAAATTATGTGTTGGTGATG+TGG + chr1_3:19899293-19899312 Msa0108390:three_prime_UTR 30.0%
AATGTGTAAAGAGGCAATGT+AGG - chr1_3:19894118-19894137 None:intergenic 35.0%
!!! TATTTTTAGGGTTTGGTTGG+TGG - chr1_3:19894173-19894192 None:intergenic 35.0%
!!! TGGTATTTTTAGGGTTTGGT+TGG - chr1_3:19894176-19894195 None:intergenic 35.0%
AAGAAGAGTTAAGAAGGAAC+AGG - chr1_3:19894386-19894405 None:intergenic 35.0%
! AGGTGAAAGCTTTGGTTAAA+GGG - chr1_3:19894471-19894490 None:intergenic 35.0%
! AAGGTGAAAGCTTTGGTTAA+AGG - chr1_3:19894472-19894491 None:intergenic 35.0%
AGATCTAAAGGTGAAAGCTT+TGG - chr1_3:19894479-19894498 None:intergenic 35.0%
TGAGAGTAGAGTGTGAAAAA+GGG + chr1_3:19894647-19894666 Msa0108390:five_prime_UTR 35.0%
AAGTGCAAGTAGTGCTTATA+TGG - chr1_3:19894723-19894742 None:intergenic 35.0%
TTCTTTGCTCAAAGAACTTG+AGG + chr1_3:19894741-19894760 Msa0108390:CDS 35.0%
!! GTTGATGATGATGAATAGTG+TGG + chr1_3:19894879-19894898 Msa0108390:intron 35.0%
!! GAGAAAGCACTTATGGTTAT+AGG + chr1_3:19895019-19895038 Msa0108390:intron 35.0%
! TTTTATTGTAAGGGGGAAAG+GGG + chr1_3:19895056-19895075 Msa0108390:intron 35.0%
!!! TCCTGTTGTTTTTGCCAAAT+AGG + chr1_3:19895346-19895365 Msa0108390:intron 35.0%
TCCTATTTGGCAAAAACAAC+AGG - chr1_3:19895350-19895369 None:intergenic 35.0%
! ATATTTGCTGCACACAACAT+GGG - chr1_3:19895606-19895625 None:intergenic 35.0%
CAGCAAATATGGAACGATAT+TGG + chr1_3:19895616-19895635 Msa0108390:intron 35.0%
GGGAATGTTTGGATGTTTAT+AGG + chr1_3:19895683-19895702 Msa0108390:CDS 35.0%
TTCTTCAATTCTTCGACCAA+TGG - chr1_3:19896104-19896123 None:intergenic 35.0%
AGAAGAAAGGTTGAAACAGT+TGG + chr1_3:19896130-19896149 Msa0108390:CDS 35.0%
AAGATAAGTGGTGAGATTTG+TGG + chr1_3:19896176-19896195 Msa0108390:CDS 35.0%
ACACTCACATTATCATTGAC+CGG - chr1_3:19896209-19896228 None:intergenic 35.0%
TCGTAGTCTTCAAAAGGAAA+AGG + chr1_3:19896298-19896317 Msa0108390:CDS 35.0%
!! ATTGCAAGACTTTCTGAAGT+CGG - chr1_3:19896448-19896467 None:intergenic 35.0%
ATGTACATCCAAGTTTGCAT+GGG + chr1_3:19896531-19896550 Msa0108390:CDS 35.0%
ATTAGCAATAGCACATTGGA+AGG + chr1_3:19896578-19896597 Msa0108390:CDS 35.0%
! AAGGAAATCTAGAGTACAGA+AGG + chr1_3:19896634-19896653 Msa0108390:CDS 35.0%
! AAGAGAGAAACTCTTTTCTG+AGG + chr1_3:19896798-19896817 Msa0108390:CDS 35.0%
TTCACCAGAGATAATAGAGA+AGG + chr1_3:19896874-19896893 Msa0108390:CDS 35.0%
AAAGCACATTTCAGCAAACA+TGG - chr1_3:19896950-19896969 None:intergenic 35.0%
ACTCGTATTTAAGAAGAGGT+CGG + chr1_3:19897028-19897047 Msa0108390:CDS 35.0%
!! TTAATGCACTAGCTTTCTCA+GGG - chr1_3:19897106-19897125 None:intergenic 35.0%
!! ATTAATGCACTAGCTTTCTC+AGG - chr1_3:19897107-19897126 None:intergenic 35.0%
GCTAGTGCATTAATAGATTC+TGG + chr1_3:19897113-19897132 Msa0108390:CDS 35.0%
!!! GAATCCTCTGTTTTTGATAC+AGG + chr1_3:19897209-19897228 Msa0108390:intron 35.0%
GTAGAAGAGAAGTAACAGAT+AGG + chr1_3:19897303-19897322 Msa0108390:CDS 35.0%
TTGCTTGTGAAGAGGAAAAT+TGG + chr1_3:19897342-19897361 Msa0108390:CDS 35.0%
GAGAGAATTACAGACTTACT+TGG - chr1_3:19897382-19897401 None:intergenic 35.0%
AGAGAACACACTGTCATTAT+AGG - chr1_3:19897606-19897625 None:intergenic 35.0%
ATAAGATTGTCAACCATTGC+TGG - chr1_3:19897631-19897650 None:intergenic 35.0%
!! GACTTGTTTTCTATACGATG+GGG + chr1_3:19897684-19897703 Msa0108390:CDS 35.0%
! AAGTGGTCCATAGTTATTTC+TGG + chr1_3:19897716-19897735 Msa0108390:intron 35.0%
ATGTCATATGTAGGTACGTT+TGG + chr1_3:19897792-19897811 Msa0108390:intron 35.0%
CGGATGATCATAGGAAAATA+TGG - chr1_3:19897901-19897920 None:intergenic 35.0%
TTCTTCTATGTCAGACCAAA+GGG - chr1_3:19897962-19897981 None:intergenic 35.0%
TTTCTTCTATGTCAGACCAA+AGG - chr1_3:19897963-19897982 None:intergenic 35.0%
! TATCTTCTCTCTTTTGACCA+AGG - chr1_3:19898191-19898210 None:intergenic 35.0%
TACTGTAAATAACCCACTTC+TGG + chr1_3:19898297-19898316 Msa0108390:intron 35.0%
CAAAAACAGAAAACCAGAAG+TGG - chr1_3:19898313-19898332 None:intergenic 35.0%
! GTAGATCTTGCATCTTCTTT+TGG - chr1_3:19898347-19898366 None:intergenic 35.0%
ACTAGGTTTAGACCCATATA+TGG - chr1_3:19898388-19898407 None:intergenic 35.0%
TACGACATTGTATCTTCCTT+AGG - chr1_3:19898636-19898655 None:intergenic 35.0%
TTTGAACTTAAACTTGGGGA+GGG - chr1_3:19898683-19898702 None:intergenic 35.0%
! TTTTGAACTTAAACTTGGGG+AGG - chr1_3:19898684-19898703 None:intergenic 35.0%
CAAGCAACATACTATTCACA+AGG - chr1_3:19898859-19898878 None:intergenic 35.0%
TTGACTATATGTGTGTGTTG+TGG + chr1_3:19899008-19899027 Msa0108390:three_prime_UTR 35.0%
TGACTATATGTGTGTGTTGT+GGG + chr1_3:19899009-19899028 Msa0108390:three_prime_UTR 35.0%
GTGAGAGTAGAGTGTGAAAA+AGG + chr1_3:19894646-19894665 Msa0108390:five_prime_UTR 40.0%
CTGTGAATAATGTTGGCCAT+TGG + chr1_3:19894679-19894698 Msa0108390:exon 40.0%
ACTAGTGATAGGACTTCCAA+TGG - chr1_3:19894698-19894717 None:intergenic 40.0%
TATGGTTATAGGGTCTCTGT+AGG + chr1_3:19895030-19895049 Msa0108390:intron 40.0%
! CATATTTGCTGCACACAACA+TGG - chr1_3:19895607-19895626 None:intergenic 40.0%
CATGTTGTGTGCAGCAAATA+TGG + chr1_3:19895605-19895624 Msa0108390:intron 40.0%
TTATAGGAGAAAGGTTGACG+AGG + chr1_3:19895699-19895718 Msa0108390:CDS 40.0%
! ATGAAAGCGTGCTTTGATGT+TGG - chr1_3:19895728-19895747 None:intergenic 40.0%
TGGTGTTCCCTTCTCAAAAT+AGG - chr1_3:19895960-19895979 None:intergenic 40.0%
TGAGATTTGTGGAATCCATC+CGG + chr1_3:19896187-19896206 Msa0108390:CDS 40.0%
TCACATTATCATTGACCGGA+TGG - chr1_3:19896205-19896224 None:intergenic 40.0%
GCATCTTCGTAGTCTTCAAA+AGG + chr1_3:19896292-19896311 Msa0108390:CDS 40.0%
AGTCTTGCAATGTGTGAATG+AGG + chr1_3:19896457-19896476 Msa0108390:CDS 40.0%
! GGTGTTCTTGGATTGGATTT+CGG + chr1_3:19896494-19896513 Msa0108390:CDS 40.0%
GATGTACATCATCTACCGTT+TGG - chr1_3:19896520-19896539 None:intergenic 40.0%
GATGTACATCCAAGTTTGCA+TGG + chr1_3:19896530-19896549 Msa0108390:CDS 40.0%
TCGCTAACCTATTCGAACTT+TGG + chr1_3:19896753-19896772 Msa0108390:CDS 40.0%
GAATCAGAAATCACCGAAAG+AGG + chr1_3:19896845-19896864 Msa0108390:CDS 40.0%
! TTGCTGAAATGTGCTTTTGC+AGG + chr1_3:19896953-19896972 Msa0108390:intron 40.0%
! AAATGTGCTTTTGCAGGCTT+CGG + chr1_3:19896959-19896978 Msa0108390:intron 40.0%
!! TAATGCACTAGCTTTCTCAG+GGG - chr1_3:19897105-19897124 None:intergenic 40.0%
ACAGAGGATTCGATAGTATC+AGG - chr1_3:19897200-19897219 None:intergenic 40.0%
CAAGCCTGTATCAAAAACAG+AGG - chr1_3:19897216-19897235 None:intergenic 40.0%
!!! CTCTGTTTTTGATACAGGCT+TGG + chr1_3:19897214-19897233 Msa0108390:intron 40.0%
GCGAATTTCAGGATAACACT+CGG + chr1_3:19897457-19897476 Msa0108390:intron 40.0%
! GACAGCAATACCTGGAATTT+TGG - chr1_3:19897547-19897566 None:intergenic 40.0%
! TCCAGGTATTGCTGTCATTA+AGG + chr1_3:19897551-19897570 Msa0108390:intron 40.0%
! TTGTTGTTGAAAGTTCCACG+TGG + chr1_3:19897579-19897598 Msa0108390:intron 40.0%
TCATATGTAGGTACGTTTGG+TGG + chr1_3:19897795-19897814 Msa0108390:intron 40.0%
! GGTACGTTTGGTGGAATTAT+TGG + chr1_3:19897804-19897823 Msa0108390:intron 40.0%
TGGATGATTACAAACTGACC+AGG + chr1_3:19897824-19897843 Msa0108390:CDS 40.0%
GACAAACAACGGATGATCAT+AGG - chr1_3:19897910-19897929 None:intergenic 40.0%
TGTTCTACACCAACTTACAC+AGG - chr1_3:19898075-19898094 None:intergenic 40.0%
ACAAACGGTTATCGTGCAAA+TGG + chr1_3:19898435-19898454 Msa0108390:CDS 40.0%
CAACTTTGTGGCTATACCTA+AGG + chr1_3:19898617-19898636 Msa0108390:CDS 40.0%
TTGAACTTAAACTTGGGGAG+GGG - chr1_3:19898682-19898701 None:intergenic 40.0%
GATAATGACTCTACTTGTGC+AGG + chr1_3:19898788-19898807 Msa0108390:intron 40.0%
! ACTATTCACAAGGTTTGCTC+TGG - chr1_3:19898849-19898868 None:intergenic 40.0%
! TGAGGACAGGAAATTAGCTT+TGG + chr1_3:19898933-19898952 Msa0108390:three_prime_UTR 40.0%
!! GAGGACAGGAAATTAGCTTT+GGG + chr1_3:19898934-19898953 Msa0108390:three_prime_UTR 40.0%
TAGGAGCAGGTAAAGAGAAG+AGG - chr1_3:19894099-19894118 None:intergenic 45.0%
TAAAGAGGCAATGTAGGAGC+AGG - chr1_3:19894112-19894131 None:intergenic 45.0%
ACATGGGATTTGTCAACCGA+AGG - chr1_3:19895590-19895609 None:intergenic 45.0%
GGACAAAGACCGTATGTTGA+TGG + chr1_3:19895651-19895670 Msa0108390:CDS 45.0%
TCTCCAGCTCCATCAACATA+CGG - chr1_3:19895663-19895682 None:intergenic 45.0%
! TATGTTGATGGAGCTGGAGA+GGG + chr1_3:19895663-19895682 Msa0108390:CDS 45.0%
TGTTGCAATCTCAGCTTCCT+TGG - chr1_3:19895764-19895783 None:intergenic 45.0%
GCAACACTAATAGCTGCACT+CGG + chr1_3:19895778-19895797 Msa0108390:CDS 45.0%
CAACACTAATAGCTGCACTC+GGG + chr1_3:19895779-19895798 Msa0108390:CDS 45.0%
AACACTAATAGCTGCACTCG+GGG + chr1_3:19895780-19895799 Msa0108390:CDS 45.0%
GGAACATGATATGAGCTCAC+CGG + chr1_3:19895801-19895820 Msa0108390:CDS 45.0%
AAAGAGATCTGCATCGCTGA+AGG + chr1_3:19896058-19896077 Msa0108390:CDS 45.0%
AATGAGGTGCATTCTCTCTG+TGG + chr1_3:19896473-19896492 Msa0108390:CDS 45.0%
CATTCTCTCTGTGGTGTTCT+TGG + chr1_3:19896482-19896501 Msa0108390:CDS 45.0%
TCTCTGTGGTGTTCTTGGAT+TGG + chr1_3:19896487-19896506 Msa0108390:CDS 45.0%
! TGGATTGGATTTCGGCCAAA+CGG + chr1_3:19896502-19896521 Msa0108390:CDS 45.0%
TAAGAAGAGGTCGGAGTTAG+AGG + chr1_3:19897037-19897056 Msa0108390:CDS 45.0%
GTGGCTATTTGCTTGTGAAG+AGG + chr1_3:19897334-19897353 Msa0108390:CDS 45.0%
GCTTGTTCTCTGACCTGATA+CGG + chr1_3:19897435-19897454 Msa0108390:intron 45.0%
ATCCTGAAATTCGCCGTATC+AGG - chr1_3:19897451-19897470 None:intergenic 45.0%
ATAACACTCGGTACAGTGCT+GGG + chr1_3:19897469-19897488 Msa0108390:CDS 45.0%
GCCTTAATGACAGCAATACC+TGG - chr1_3:19897555-19897574 None:intergenic 45.0%
ACTGTCATTATAGGTCCACG+TGG - chr1_3:19897597-19897616 None:intergenic 45.0%
GTGTGTTCTCTTTCCAGCAA+TGG + chr1_3:19897615-19897634 Msa0108390:intron 45.0%
AAGAAGAGAAGAGACGACAG+AGG + chr1_3:19897857-19897876 Msa0108390:CDS 45.0%
AGAAGAGAAGAGACGACAGA+GGG + chr1_3:19897858-19897877 Msa0108390:CDS 45.0%
TCCTACTCTGGTCGTCATAA+CGG + chr1_3:19898555-19898574 Msa0108390:CDS 45.0%
GGTATAGCCACAAAGTTGAG+AGG - chr1_3:19898615-19898634 None:intergenic 45.0%
AGTGGGATAGCTGACATTTG+AGG + chr1_3:19898915-19898934 Msa0108390:three_prime_UTR 45.0%
GATAGCTGACATTTGAGGAC+AGG + chr1_3:19898920-19898939 Msa0108390:three_prime_UTR 45.0%
!! GCTTTGGGAAGTGTTGATAC+AGG + chr1_3:19898949-19898968 Msa0108390:three_prime_UTR 45.0%
!! TGGGAAGTGTTGATACAGGT+AGG + chr1_3:19898953-19898972 Msa0108390:three_prime_UTR 45.0%
!! GGGAAGTGTTGATACAGGTA+GGG + chr1_3:19898954-19898973 Msa0108390:three_prime_UTR 45.0%
GATACAGGTAGGGACAGTTA+AGG + chr1_3:19898964-19898983 Msa0108390:three_prime_UTR 45.0%
ACCAAGTGTCAGTGTCATGT+TGG - chr1_3:19899242-19899261 None:intergenic 45.0%
!! GAAAAAAAAAAAAAAAAAAA+AGG - chr1_3:19894239-19894258 None:intergenic 5.0%
!!! AATTTAATTTTAGTAATTAA+TGG - chr1_3:19898029-19898048 None:intergenic 5.0%
CGATATTGGAGAGAGCGAGA+AGG + chr1_3:19895630-19895649 Msa0108390:CDS 50.0%
! AGACCGTATGTTGATGGAGC+TGG + chr1_3:19895657-19895676 Msa0108390:CDS 50.0%
! GTATGTTGATGGAGCTGGAG+AGG + chr1_3:19895662-19895681 Msa0108390:CDS 50.0%
TCATCAATCCCTTGCAGCCA+AGG + chr1_3:19895744-19895763 Msa0108390:CDS 50.0%
GCTTGCATCTGTCACACCAT+TGG + chr1_3:19896085-19896104 Msa0108390:CDS 50.0%
AATGTGAGTGTCAGCAGCAC+AGG + chr1_3:19896218-19896237 Msa0108390:CDS 50.0%
TCCAAGTTTGCATGGGACTC+AGG + chr1_3:19896538-19896557 Msa0108390:CDS 50.0%
ACCTGAGTCCCATGCAAACT+TGG - chr1_3:19896542-19896561 None:intergenic 50.0%
AAGTTTGCATGGGACTCAGG+TGG + chr1_3:19896541-19896560 Msa0108390:CDS 50.0%
!! TGGTGAAAGAGCGCCTCTTT+CGG - chr1_3:19896861-19896880 None:intergenic 50.0%
TCAGGGGCAGTACTTGTATC+AGG - chr1_3:19897089-19897108 None:intergenic 50.0%
GACCTGATACGGCGAATTTC+AGG + chr1_3:19897446-19897465 Msa0108390:intron 50.0%
GATAACACTCGGTACAGTGC+TGG + chr1_3:19897468-19897487 Msa0108390:CDS 50.0%
CGATGGGGTAAGCTTCAAAG+TGG + chr1_3:19897699-19897718 Msa0108390:intron 50.0%
CTCTTCTTCTCTCTGTTGCC+TGG - chr1_3:19897845-19897864 None:intergenic 50.0%
ATTGAGTTCCGTCGAGGTGT+AGG - chr1_3:19898501-19898520 None:intergenic 50.0%
TCCGTTATGACGACCAGAGT+AGG - chr1_3:19898559-19898578 None:intergenic 50.0%
! CACAAAGTTGAGAGGTGCAG+TGG - chr1_3:19898607-19898626 None:intergenic 50.0%
CACTGCACCTCTCAACTTTG+TGG + chr1_3:19898605-19898624 Msa0108390:CDS 50.0%
TTAAACTTGGGGAGGGGACT+CGG - chr1_3:19898676-19898695 None:intergenic 50.0%
ACATGGACAGTGAGACTGAG+TGG + chr1_3:19898897-19898916 Msa0108390:three_prime_UTR 50.0%
CATGGACAGTGAGACTGAGT+GGG + chr1_3:19898898-19898917 Msa0108390:three_prime_UTR 50.0%
GCCAACATGACACTGACACT+TGG + chr1_3:19899238-19899257 Msa0108390:three_prime_UTR 50.0%
GGTGATGTGGTGATTAGAGC+TGG + chr1_3:19899306-19899325 Msa0108390:three_prime_UTR 50.0%
GGAGCTGGAGAGGGAATGTT+TGG + chr1_3:19895672-19895691 Msa0108390:CDS 55.0%
CTCAGCTTCCTTGGCTGCAA+GGG - chr1_3:19895755-19895774 None:intergenic 55.0%
TCTCAGCTTCCTTGGCTGCA+AGG - chr1_3:19895756-19895775 None:intergenic 55.0%
!! CTTTCTGAAGTCGGTCCGAC+TGG - chr1_3:19896439-19896458 None:intergenic 55.0%
TTTGCAGGCTTCGGCAGAAG+TGG + chr1_3:19896968-19896987 Msa0108390:intron 55.0%
CGTGCAAATGGCAACAGCGT+CGG + chr1_3:19898447-19898466 Msa0108390:CDS 55.0%
!! AATGGCAACAGCGTCGGCTA+TGG + chr1_3:19898453-19898472 Msa0108390:CDS 55.0%
!! AACAGCGTCGGCTATGGCAA+CGG + chr1_3:19898459-19898478 Msa0108390:CDS 55.0%
CTATGCCTCCTACACCTCGA+CGG + chr1_3:19898490-19898509 Msa0108390:CDS 55.0%
CCTCGACGGAACTCAATGAG+CGG + chr1_3:19898504-19898523 Msa0108390:CDS 55.0%
TAAACTTGGGGAGGGGACTC+GGG - chr1_3:19898675-19898694 None:intergenic 55.0%
GTGAGTGTCAGCAGCACAGG+TGG + chr1_3:19896221-19896240 Msa0108390:CDS 60.0%
GTCGGCTATGGCAACGGCAA+TGG + chr1_3:19898465-19898484 Msa0108390:CDS 60.0%
GAGTTCCGTCGAGGTGTAGG+AGG - chr1_3:19898498-19898517 None:intergenic 60.0%
CCGCTCATTGAGTTCCGTCG+AGG - chr1_3:19898507-19898526 None:intergenic 60.0%
CACACACCACGCTCCTACTC+TGG + chr1_3:19898543-19898562 Msa0108390:CDS 60.0%
TGACGACCAGAGTAGGAGCG+TGG - chr1_3:19898552-19898571 None:intergenic 60.0%
! ACTCGGTACAGTGCTGGGCG+AGG + chr1_3:19897474-19897493 Msa0108390:CDS 65.0%
TTGGGGAGGGGACTCGGGTT+CGG - chr1_3:19898670-19898689 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 19894003 19899329 19894003 ID=Msa0108390;Name=Msa0108390
chr1_3 mRNA 19894003 19899329 19894003 ID=Msa0108390-mRNA-1;Parent=Msa0108390;Name=Msa0108390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=685|1|1|1|0.90|0.83|12|539|608
chr1_3 exon 19894003 19894762 19894003 ID=Msa0108390-mRNA-1:exon:7166;Parent=Msa0108390-mRNA-1
chr1_3 exon 19895619 19895822 19895619 ID=Msa0108390-mRNA-1:exon:7167;Parent=Msa0108390-mRNA-1
chr1_3 exon 19896047 19896319 19896047 ID=Msa0108390-mRNA-1:exon:7168;Parent=Msa0108390-mRNA-1
chr1_3 exon 19896440 19896655 19896440 ID=Msa0108390-mRNA-1:exon:7169;Parent=Msa0108390-mRNA-1
chr1_3 exon 19896740 19896895 19896740 ID=Msa0108390-mRNA-1:exon:7170;Parent=Msa0108390-mRNA-1
chr1_3 exon 19896975 19897134 19896975 ID=Msa0108390-mRNA-1:exon:7171;Parent=Msa0108390-mRNA-1
chr1_3 exon 19897231 19897382 19897231 ID=Msa0108390-mRNA-1:exon:7172;Parent=Msa0108390-mRNA-1
chr1_3 exon 19897468 19897555 19897468 ID=Msa0108390-mRNA-1:exon:7173;Parent=Msa0108390-mRNA-1
chr1_3 exon 19897632 19897705 19897632 ID=Msa0108390-mRNA-1:exon:7174;Parent=Msa0108390-mRNA-1
chr1_3 exon 19897805 19897879 19897805 ID=Msa0108390-mRNA-1:exon:7175;Parent=Msa0108390-mRNA-1
chr1_3 exon 19898342 19898714 19898342 ID=Msa0108390-mRNA-1:exon:7176;Parent=Msa0108390-mRNA-1
chr1_3 exon 19898810 19899329 19898810 ID=Msa0108390-mRNA-1:exon:7177;Parent=Msa0108390-mRNA-1
chr1_3 five_prime_UTR 19894003 19894687 19894003 ID=Msa0108390-mRNA-1:five_prime_utr;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19894688 19894762 19894688 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19895619 19895822 19895619 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19896047 19896319 19896047 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19896440 19896655 19896440 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19896740 19896895 19896740 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19896975 19897134 19896975 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19897231 19897382 19897231 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19897468 19897555 19897468 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19897632 19897705 19897632 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19897805 19897879 19897805 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 CDS 19898342 19898695 19898342 ID=Msa0108390-mRNA-1:cds;Parent=Msa0108390-mRNA-1
chr1_3 three_prime_UTR 19898696 19898714 19898696 ID=Msa0108390-mRNA-1:three_prime_utr;Parent=Msa0108390-mRNA-1
chr1_3 three_prime_UTR 19898810 19899329 19898810 ID=Msa0108390-mRNA-1:three_prime_utr;Parent=Msa0108390-mRNA-1
Gene Sequence

>Msa0108390

ATGTTGGCCATTGGAAGTCCTATCACTAGTATCCATATAAGCACTACTTGCACTTCTTTGCTCAAAGAACTTGAGCAAATATGGAACGATATTGGAGAGAGCGAGAAGGACAAAGACCGTATGTTGATGGAGCTGGAGAGGGAATGTTTGGATGTTTATAGGAGAAAGGTTGACGAGGCTGCCAACATCAAAGCACGCTTTCATCAATCCCTTGCAGCCAAGGAAGCTGAGATTGCAACACTAATAGCTGCACTCGGGGAACATGATATGAGCTCACCGATTAAGATGGAAAAGAGATCTGCATCGCTGAAGGAGAAGCTTGCATCTGTCACACCATTGGTCGAAGAATTGAAGAAGAAAAAAGAAGAAAGGTTGAAACAGTTGGCAGATATTAAAACTCAAATAGAAAAGATAAGTGGTGAGATTTGTGGAATCCATCCGGTCAATGATAATGTGAGTGTCAGCAGCACAGGTGGTGTAGACGAACAAGACTTGTCTATTAGAAGACTTGATGAATATCAAACGCATCTTCGTAGTCTTCAAAAGGAAAAGTCGGACCGACTTCAGAAAGTCTTGCAATGTGTGAATGAGGTGCATTCTCTCTGTGGTGTTCTTGGATTGGATTTCGGCCAAACGGTAGATGATGTACATCCAAGTTTGCATGGGACTCAGGTGGAACAATCGACTAATATTAGCAATAGCACATTGGAAGGTCTAGAGAAGACCATTCTCAAGTTAAAAGCAGAAAGGAAATCTAGAGTACAGAAGTTGAAGGATGTTGTCGCTAACCTATTCGAACTTTGGAATTTGATGGACACTTCAAAAGAAGAGAGAAACTCTTTTCTGAGGAATACTTCTATTGTCACAACTTCAGAATCAGAAATCACCGAAAGAGGCGCTCTTTCACCAGAGATAATAGAGAAGGCTTCGGCAGAAGTGGAAAGACTTGCTAAACTAAAAGCGAGTAGAATGAAAGAACTCGTATTTAAGAAGAGGTCGGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCTGATACAAGTACTGCCCCTGAGAAAGCTAGTGCATTAATAGATTCTGGCTTGGTTGATCCTTGTGAACTATTAGCTAACATTGAAGCACAAATAGTAAAGGCAAAAGATGAAGCTTTGAGTAGAAGAGAAGTAACAGATAGGATTGATAAGTGGCTATTTGCTTGTGAAGAGGAAAATTGGCTCGACGAATATAGCCAAGATAACACTCGGTACAGTGCTGGGCGAGGTGCTCACATTAATCTGAAACGTGCAGAACGAGCAAGAGTAACTATAACCAAAATTCCAGCAATGGTTGACAATCTTATAAGCAAAACACTAGCATGGGAAGATGAAAAGAAGACTTGTTTTCTATACGATGGGGTACGTTTGGTGGAATTATTGGATGATTACAAACTGACCAGGCAACAGAGAGAAGAAGAGAAGAGACGACAGAGGGACCAAAAGAAGATGCAAGATCTACTCCTAAATCAAAAGGAAGCCATATATGGGTCTAAACCTAGTCCAAAAAAAACTAACAGCTTTAGAAAGACAAACGGTTATCGTGCAAATGGCAACAGCGTCGGCTATGGCAACGGCAATGGATCTATGCCTCCTACACCTCGACGGAACTCAATGAGCGGTACAACATCTGAACTACACACACCACGCTCCTACTCTGGTCGTCATAACGGATACTTCAGCGAAATGAGAAGATTGTCCACTGCACCTCTCAACTTTGTGGCTATACCTAAGGAAGATACAATGTCGTATAGTTGCAGTTCCGAACCCGAGTCCCCTCCCCAAGTTTAA

Protein sequence

>Msa0108390

MLAIGSPITSIHISTTCTSLLKELEQIWNDIGESEKDKDRMLMELERECLDVYRRKVDEAANIKARFHQSLAAKEAEIATLIAALGEHDMSSPIKMEKRSASLKEKLASVTPLVEELKKKKEERLKQLADIKTQIEKISGEICGIHPVNDNVSVSSTGGVDEQDLSIRRLDEYQTHLRSLQKEKSDRLQKVLQCVNEVHSLCGVLGLDFGQTVDDVHPSLHGTQVEQSTNISNSTLEGLEKTILKLKAERKSRVQKLKDVVANLFELWNLMDTSKEERNSFLRNTSIVTTSESEITERGALSPEIIEKASAEVERLAKLKASRMKELVFKKRSELEEICRLTHIEPDTSTAPEKASALIDSGLVDPCELLANIEAQIVKAKDEALSRREVTDRIDKWLFACEEENWLDEYSQDNTRYSAGRGAHINLKRAERARVTITKIPAMVDNLISKTLAWEDEKKTCFLYDGVRLVELLDDYKLTRQQREEEKRRQRDQKKMQDLLLNQKEAIYGSKPSPKKTNSFRKTNGYRANGNSVGYGNGNGSMPPTPRRNSMSGTTSELHTPRSYSGRHNGYFSEMRRLSTAPLNFVAIPKEDTMSYSCSSEPESPPQV*