AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0962840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962840 MtrunA17_Chr6g0482721 98.148 216 4 0 1 216 1 216 7.21e-160 440
Msa0962840 MtrunA17_Chr8g0392931 76.777 211 48 1 5 214 7 217 2.09e-111 318
Msa0962840 MtrunA17_Chr4g0040781 58.294 211 84 2 6 214 7 215 1.06e-87 258
Msa0962840 MtrunA17_Chr2g0283131 57.820 211 85 2 6 214 7 215 3.61e-87 256
Msa0962840 MtrunA17_Chr4g0046261 57.820 211 85 2 6 214 7 215 7.27e-87 255
Msa0962840 MtrunA17_Chr2g0325091 58.571 210 84 3 6 214 5 212 2.55e-86 254
Msa0962840 MtrunA17_Chr2g0315551 57.416 209 89 0 6 214 7 215 1.68e-85 252
Msa0962840 MtrunA17_Chr3g0112681 52.336 214 102 0 1 214 1 214 2.67e-80 239
Msa0962840 MtrunA17_Chr4g0032201 53.488 215 97 3 1 214 1 213 1.60e-79 237
Msa0962840 MtrunA17_Chr2g0319951 55.238 210 93 1 6 214 7 216 5.81e-79 235
Msa0962840 MtrunA17_Chr2g0276941 54.286 210 95 1 6 214 9 218 3.68e-78 233
Msa0962840 MtrunA17_Chr8g0381841 53.023 215 93 4 6 214 11 223 5.00e-75 226
Msa0962840 MtrunA17_Chr3g0123821 50.943 212 101 1 6 214 10 221 1.54e-74 224
Msa0962840 MtrunA17_Chr7g0231131 49.767 215 104 2 5 216 8 221 7.34e-72 218
Msa0962840 MtrunA17_Chr1g0174281 48.372 215 106 2 5 214 8 222 3.48e-70 213
Msa0962840 MtrunA17_Chr8g0346421 49.074 216 100 2 5 214 19 230 1.07e-69 213
Msa0962840 MtrunA17_Chr7g0275991 49.074 216 98 2 7 214 15 226 2.07e-69 211
Msa0962840 MtrunA17_Chr1g0189361 58.382 173 72 0 10 182 12 184 4.76e-68 208
Msa0962840 MtrunA17_Chr8g0351861 50.000 220 94 4 7 214 11 226 9.53e-66 202
Msa0962840 MtrunA17_Chr7g0214241 56.395 172 75 0 11 182 14 185 5.16e-65 200
Msa0962840 MtrunA17_Chr7g0234201 54.974 191 81 1 11 196 12 202 5.25e-65 200
Msa0962840 MtrunA17_Chr6g0458081 54.878 164 74 0 10 173 4 167 1.19e-57 181
Msa0962840 MtrunA17_Chr2g0290891 53.293 167 78 0 11 177 5 171 7.34e-56 176
Msa0962840 MtrunA17_Chr8g0349711 48.677 189 92 2 11 194 5 193 1.07e-54 174
Msa0962840 MtrunA17_Chr2g0276931 43.902 205 106 1 10 214 7 202 1.62e-54 173
Msa0962840 MtrunA17_Chr4g0055651 48.387 186 94 2 5 189 1 185 7.43e-54 171
Msa0962840 MtrunA17_Chr7g0250531 45.408 196 105 1 5 198 1 196 1.63e-53 170
Msa0962840 MtrunA17_Chr8g0335471 48.023 177 92 0 5 181 1 177 6.96e-53 169
Msa0962840 MtrunA17_Chr8g0349681 53.293 167 78 0 11 177 383 549 3.47e-52 177
Msa0962840 MtrunA17_Chr8g0349681 46.196 184 97 1 11 192 174 357 5.03e-49 168
Msa0962840 MtrunA17_Chr8g0349681 50.314 159 79 0 11 169 12 170 1.48e-46 161
Msa0962840 MtrunA17_Chr1g0182321 41.262 206 116 2 10 214 13 214 3.38e-50 162
Msa0962840 MtrunA17_Chr1g0182301 40.777 206 117 2 10 214 13 214 1.04e-49 161
Msa0962840 MtrunA17_Chr8g0384311 48.851 174 86 3 7 178 8 180 1.34e-49 160
Msa0962840 MtrunA17_Chr1g0212521 41.429 210 110 4 10 214 13 214 2.29e-49 160
Msa0962840 MtrunA17_Chr1g0159481 49.708 171 83 3 10 178 15 184 1.81e-48 158
Msa0962840 MtrunA17_Chr7g0263071 43.316 187 105 1 10 195 13 199 2.01e-48 157
Msa0962840 MtrunA17_Chr4g0030911 47.879 165 85 1 10 173 13 177 2.90e-48 157
Msa0962840 MtrunA17_Chr3g0109721 46.875 160 85 0 14 173 12 171 3.95e-47 154
Msa0962840 MtrunA17_Chr5g0433561 46.250 160 86 0 14 173 12 171 9.11e-47 153
Msa0962840 MtrunA17_Chr3g0130271 46.961 181 92 4 1 178 1 180 4.86e-46 151
Msa0962840 MtrunA17_Chr7g0265001 43.961 207 107 4 10 214 14 213 2.32e-44 147
Msa0962840 MtrunA17_Chr2g0327911 44.118 170 93 2 6 173 9 178 3.62e-44 147
Msa0962840 MtrunA17_Chr8g0390561 39.429 175 106 0 14 188 11 185 1.13e-42 142
Msa0962840 MtrunA17_Chr1g0197331 47.093 172 88 3 10 178 13 184 1.50e-42 142
Msa0962840 MtrunA17_Chr3g0123971 38.506 174 107 0 13 186 10 183 1.97e-42 142
Msa0962840 MtrunA17_Chr1g0180291 42.995 207 108 5 10 214 12 210 2.29e-42 142
Msa0962840 MtrunA17_Chr1g0199331 44.099 161 89 1 14 173 33 193 2.65e-42 141
Msa0962840 MtrunA17_Chr8g0382221 37.853 177 108 1 13 187 10 186 2.74e-41 139
Msa0962840 MtrunA17_Chr5g0400131 41.558 154 90 0 13 166 10 163 7.06e-40 135
Msa0962840 MtrunA17_Chr4g0055081 40.260 154 92 0 13 166 10 163 1.37e-39 135
Msa0962840 MtrunA17_Chr2g0331691 38.690 168 95 4 12 172 10 176 6.24e-33 117
Msa0962840 MtrunA17_Chr8g0383261 39.877 163 91 3 12 167 12 174 6.45e-33 117
Msa0962840 MtrunA17_Chr6g0466301 37.576 165 96 3 12 169 8 172 1.16e-32 117
Msa0962840 MtrunA17_Chr6g0465491 37.576 165 96 3 12 169 8 172 1.16e-32 117
Msa0962840 MtrunA17_Chr4g0034871 37.037 162 95 3 12 166 8 169 1.33e-32 117
Msa0962840 MtrunA17_Chr1g0201121 37.423 163 95 3 12 167 8 170 6.32e-31 112
Msa0962840 MtrunA17_Chr4g0004661 37.037 162 95 3 12 166 64 225 8.27e-31 114
Msa0962840 MtrunA17_Chr3g0138101 33.908 174 111 4 1 173 1 171 3.76e-24 95.5
Msa0962840 MtrunA17_Chr3g0138121 33.908 174 111 4 1 173 1 171 4.05e-24 95.5
Msa0962840 MtrunA17_Chr3g0138111 33.908 174 111 4 1 173 1 171 4.18e-24 95.5
Msa0962840 MtrunA17_Chr6g0466161 36.486 148 87 3 27 167 5 152 1.68e-23 93.6
Msa0962840 MtrunA17_Chr6g0465471 36.486 148 87 3 27 167 5 152 1.87e-23 93.2
Msa0962840 MtrunA17_Chr6g0486041 27.979 193 125 5 12 192 6 196 4.47e-17 76.6
Msa0962840 MtrunA17_Chr6g0466431 37.624 101 54 1 12 112 8 99 1.22e-16 72.4
Msa0962840 MtrunA17_Chr6g0465611 37.624 101 54 1 12 112 8 99 1.22e-16 72.4
Msa0962840 MtrunA17_Chr4g0046211 33.065 124 80 3 12 134 6 127 1.90e-16 73.2
Msa0962840 MtrunA17_Chr2g0325101 33.871 124 79 3 12 134 6 127 1.98e-16 74.3
Msa0962840 MtrunA17_Chr2g0331841 56.897 58 25 0 81 138 2 59 2.08e-16 71.6
Msa0962840 MtrunA17_Chr3g0117931 29.545 176 107 6 12 172 8 181 3.09e-16 74.3
Msa0962840 MtrunA17_Chr4g0037021 32.414 145 88 4 12 155 6 141 3.48e-16 73.9
Msa0962840 MtrunA17_Chr5g0405791 33.065 124 80 3 12 134 6 127 5.05e-16 73.6
Msa0962840 MtrunA17_Chr8g0371501 29.697 165 103 5 12 172 6 161 8.82e-16 72.8
Msa0962840 MtrunA17_Chr1g0178291 34.395 157 93 5 17 170 433 582 1.14e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962840 AT1G73640.1 64.192 229 66 3 3 215 4 232 2.12e-103 298
Msa0962840 AT1G18200.1 64.000 225 69 3 3 215 4 228 3.68e-103 298
Msa0962840 AT5G60860.1 57.346 211 86 2 6 214 7 215 2.76e-87 257
Msa0962840 AT1G16920.1 58.049 205 85 1 10 214 11 214 1.65e-85 252
Msa0962840 AT4G18430.1 56.808 213 88 2 6 216 7 217 9.37e-85 250
Msa0962840 AT5G45750.1 57.416 209 88 1 6 214 7 214 4.28e-84 249
Msa0962840 AT2G33870.1 56.398 211 89 2 6 214 7 216 7.73e-84 248
Msa0962840 AT3G15060.1 56.398 211 88 2 6 214 7 215 1.29e-83 248
Msa0962840 AT1G28550.1 56.522 207 87 2 10 214 11 216 3.53e-83 246
Msa0962840 AT1G09630.1 53.271 214 100 0 1 214 1 214 2.10e-82 244
Msa0962840 AT1G06400.1 57.143 210 87 2 6 214 7 214 3.99e-82 244
Msa0962840 AT4G18800.1 55.981 209 89 1 6 214 7 212 8.60e-81 240
Msa0962840 AT1G07410.1 53.738 214 97 2 1 214 1 212 3.81e-79 236
Msa0962840 AT5G47960.1 52.582 213 98 1 5 214 8 220 1.50e-75 227
Msa0962840 AT5G65270.1 53.271 214 93 3 7 214 12 224 2.48e-74 224
Msa0962840 AT4G39990.1 52.381 210 96 2 8 214 13 221 3.12e-74 224
Msa0962840 AT3G46830.1 52.093 215 102 1 1 214 1 215 9.10e-74 223
Msa0962840 AT3G46830.2 52.093 215 102 1 1 214 1 215 9.10e-74 223
Msa0962840 AT3G12160.1 52.113 213 98 2 5 214 8 219 1.95e-73 222
Msa0962840 AT5G59150.1 51.852 216 101 3 1 214 1 215 8.81e-73 220
Msa0962840 AT5G47520.1 53.302 212 96 2 6 214 8 219 7.06e-70 213
Msa0962840 AT2G31680.1 50.725 207 100 1 10 214 10 216 2.43e-66 204
Msa0962840 AT2G43130.1 49.533 214 106 1 1 214 1 212 1.78e-65 201
Msa0962840 AT1G01200.1 47.032 219 104 4 4 213 20 235 9.64e-65 200
Msa0962840 AT1G05810.1 48.826 213 94 3 10 214 10 215 1.45e-64 199
Msa0962840 AT3G07410.1 50.971 206 100 1 10 214 10 215 2.06e-64 199
Msa0962840 AT1G05810.2 48.826 213 94 3 10 214 56 261 3.79e-64 200
Msa0962840 AT4G35860.1 46.860 207 108 1 10 214 4 210 9.50e-59 184
Msa0962840 AT4G17170.1 45.631 206 110 1 11 214 5 210 4.20e-56 177
Msa0962840 AT4G17160.1 46.602 206 102 3 11 214 5 204 5.53e-55 174
Msa0962840 AT1G02130.1 47.458 177 93 0 5 181 1 177 2.39e-53 170
Msa0962840 AT5G47200.1 43.602 211 107 4 5 214 1 200 7.66e-53 169
Msa0962840 AT3G11730.1 45.550 191 104 0 10 200 6 196 8.21e-53 169
Msa0962840 AT4G17530.1 43.602 211 107 4 5 214 1 200 8.73e-53 169
Msa0962840 AT5G03520.1 42.512 207 114 2 10 215 13 215 3.55e-49 160
Msa0962840 AT3G53610.2 41.748 206 115 2 10 214 13 214 5.02e-49 159
Msa0962840 AT3G53610.3 41.748 206 115 2 10 214 13 214 5.02e-49 159
Msa0962840 AT3G53610.1 41.748 206 115 2 10 214 13 214 5.02e-49 159
Msa0962840 AT5G59840.1 41.748 206 115 2 10 214 13 214 5.97e-49 159
Msa0962840 AT1G43890.3 50.292 171 82 3 10 178 11 180 1.03e-48 159
Msa0962840 AT1G43890.1 50.292 171 82 3 10 178 11 180 1.03e-48 159
Msa0962840 AT1G43890.2 50.292 171 82 3 10 178 11 180 1.03e-48 159
Msa0962840 AT3G46060.2 41.748 206 115 2 10 214 13 214 5.94e-48 157
Msa0962840 AT3G46060.3 41.748 206 115 2 10 214 13 214 5.94e-48 157
Msa0962840 AT3G46060.1 41.748 206 115 2 10 214 13 214 5.94e-48 157
Msa0962840 AT5G45130.1 42.935 184 99 1 14 197 12 189 6.17e-48 156
Msa0962840 AT5G59150.2 49.080 163 80 3 54 214 3 164 1.86e-47 154
Msa0962840 AT3G09900.1 40.777 206 118 2 10 214 13 215 4.10e-47 155
Msa0962840 AT5G45130.2 42.857 182 98 1 16 197 22 197 4.52e-47 154
Msa0962840 AT4G19640.1 41.209 182 101 1 14 195 12 187 4.28e-46 152
Msa0962840 AT5G03530.2 43.478 207 107 5 10 214 11 209 8.23e-44 146
Msa0962840 AT5G03530.1 43.478 207 107 5 10 214 11 209 8.23e-44 146
Msa0962840 AT4G39890.1 40.476 168 99 1 13 179 10 177 2.44e-43 145
Msa0962840 AT4G35860.2 44.785 163 88 1 54 214 2 164 5.59e-42 140
Msa0962840 AT3G54840.1 45.860 157 84 1 14 169 35 191 1.11e-41 140
Msa0962840 AT3G54840.3 45.806 155 83 1 16 169 3 157 1.49e-41 139
Msa0962840 AT3G54840.2 46.104 154 82 1 14 166 35 188 1.67e-41 139
Msa0962840 AT2G22290.1 37.572 173 108 0 13 185 10 182 8.78e-41 138
Msa0962840 AT5G10260.1 41.558 154 90 0 13 166 10 163 5.21e-40 136
Msa0962840 AT5G64990.1 34.483 203 125 2 13 213 8 204 7.85e-39 133
Msa0962840 AT3G09910.3 46.199 171 89 3 10 178 11 180 1.24e-38 132
Msa0962840 AT3G09910.1 46.199 171 89 3 10 178 11 180 1.24e-38 132
Msa0962840 AT3G09910.2 46.199 171 89 3 10 178 11 180 1.24e-38 132
Msa0962840 AT2G44610.1 40.260 154 92 0 13 166 10 163 2.75e-38 132
Msa0962840 AT3G09910.5 44.262 183 94 4 10 190 11 187 8.39e-38 130
Msa0962840 AT3G09910.4 44.262 183 94 4 10 190 11 187 8.39e-38 130
Msa0962840 AT4G19640.3 45.802 131 71 0 14 144 12 142 8.24e-37 127
Msa0962840 AT4G19640.2 46.032 126 68 0 14 139 12 137 2.67e-36 125
Msa0962840 AT5G03520.2 38.824 170 99 2 47 215 40 205 4.19e-36 126
Msa0962840 AT5G64990.2 33.333 210 125 3 13 213 8 211 4.89e-36 126
Msa0962840 AT1G22740.1 39.645 169 94 5 12 173 8 175 5.98e-34 120
Msa0962840 AT1G52280.1 38.095 168 96 4 12 172 8 174 5.97e-33 118
Msa0962840 AT3G18820.1 37.654 162 94 3 12 166 8 169 3.43e-32 116
Msa0962840 AT4G09720.1 36.970 165 97 4 12 169 8 172 7.73e-32 115
Msa0962840 AT1G49300.2 36.527 167 99 3 12 171 8 174 1.13e-31 115
Msa0962840 AT1G49300.1 36.527 167 99 3 12 171 8 174 1.13e-31 115
Msa0962840 AT4G09720.4 36.471 170 96 4 12 169 8 177 3.35e-31 114
Msa0962840 AT2G21880.1 32.642 193 115 4 12 197 9 193 9.58e-31 112
Msa0962840 AT3G16100.1 36.905 168 98 4 12 172 8 174 1.94e-30 111
Msa0962840 AT5G39620.1 37.725 167 97 3 13 172 6 172 4.47e-30 110
Msa0962840 AT4G09720.3 35.227 176 96 4 12 169 8 183 4.58e-30 111
Msa0962840 AT5G46025.1 47.170 106 55 1 74 178 6 111 5.73e-28 102
Msa0962840 AT5G55080.1 31.677 161 107 3 13 173 14 171 9.39e-25 97.4
Msa0962840 AT5G20020.1 33.908 174 111 4 1 173 1 171 5.64e-24 95.5
Msa0962840 AT5G55190.1 33.908 174 111 4 1 173 1 171 5.76e-24 95.5
Msa0962840 AT5G20010.1 33.908 174 111 4 1 173 1 171 6.68e-24 95.1
Msa0962840 AT2G21880.4 30.114 176 108 4 29 197 1 168 1.41e-22 90.9
Msa0962840 AT2G21880.3 30.114 176 108 4 29 197 1 168 1.41e-22 90.9
Msa0962840 AT4G09720.6 37.037 135 78 4 42 169 4 138 2.98e-22 89.7
Msa0962840 AT4G09720.5 37.037 135 78 4 42 169 4 138 2.98e-22 89.7
Msa0962840 AT4G09720.2 37.037 135 78 4 42 169 4 138 2.98e-22 89.7
Msa0962840 AT2G44690.1 31.443 194 115 6 12 193 18 205 3.67e-21 87.8
Msa0962840 AT2G21880.2 30.909 165 99 4 12 169 9 165 5.52e-21 87.0
Msa0962840 AT4G35020.1 32.121 165 99 5 12 172 6 161 2.33e-17 77.4
Msa0962840 AT4G35020.2 32.121 165 99 5 12 172 6 161 2.33e-17 77.4
Msa0962840 AT4G35020.3 32.121 165 99 5 12 172 6 161 2.33e-17 77.4
Msa0962840 AT4G28950.1 34.454 119 75 3 12 129 6 122 2.96e-16 74.7
Msa0962840 AT5G45970.1 32.558 129 84 3 12 139 6 132 1.45e-15 72.8
Msa0962840 AT1G20090.1 33.871 124 79 3 12 134 5 126 1.60e-15 72.4
Msa0962840 AT5G62880.2 28.571 175 112 5 12 182 8 173 1.96e-15 72.0
Msa0962840 AT1G75840.1 33.065 124 80 3 12 134 6 127 2.62e-15 71.6
Msa0962840 AT2G17800.2 28.571 168 107 5 12 175 6 164 3.08e-15 71.6
Msa0962840 AT2G17800.1 28.571 168 107 5 12 175 6 164 3.08e-15 71.6
Msa0962840 AT3G48040.2 33.065 124 80 3 12 134 8 129 3.18e-15 71.2
Msa0962840 AT3G48040.1 33.065 124 80 3 12 134 8 129 3.73e-15 71.6
Msa0962840 AT3G51300.1 32.787 122 79 3 14 134 8 127 4.19e-15 71.2
Msa0962840 AT4G35950.1 32.258 124 81 3 12 134 6 127 5.09e-15 70.9
Msa0962840 AT5G62880.1 30.345 145 91 4 12 155 8 143 8.05e-15 70.9
Msa0962840 AT4G35020.4 35.965 114 70 3 14 126 8 119 4.92e-14 67.4
Msa0962840 AT4G35020.5 35.965 114 70 3 14 126 8 119 4.92e-14 67.4

Find 54 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCCTTTGGAATTAA+AGG 0.161579 6_3:-86417778 Msa0962840:five_prime_UTR
TTACATGAGCTTAGAGAATT+TGG 0.172347 6_3:-86414360 Msa0962840:CDS
CTCTTCAAAACCGTTCTAAT+TGG 0.205120 6_3:-86417649 Msa0962840:CDS
ACCGTTCTAATTGGAGATTC+TGG 0.213565 6_3:-86417640 Msa0962840:CDS
AGCTCATCAAAGCACAAATA+TGG 0.246432 6_3:-86417507 Msa0962840:CDS
AAAATGAATGGGACAAAATT+AGG 0.248904 6_3:-86414126 Msa0962840:CDS
CCCTATTAGTCTTCTTCCTT+TGG 0.266135 6_3:-86417787 Msa0962840:five_prime_UTR
TCCAAAGGAAGAAGACTAAT+AGG 0.280169 6_3:+86417786 None:intergenic
GCTTAGAGATAAATTAATTA+AGG 0.288422 6_3:-86417730 Msa0962840:five_prime_UTR
CCAACCATAGGTGTGGAATT+TGG 0.291621 6_3:-86417556 Msa0962840:CDS
CTTCTTCCTTTGGAATTAAA+GGG 0.321247 6_3:-86417777 Msa0962840:five_prime_UTR
AAACAAGTCAATTGTTGTTA+TGG 0.321662 6_3:-86414054 Msa0962840:CDS
ACAAAATTAGGTCTTCCTAA+TGG 0.326555 6_3:-86414114 Msa0962840:CDS
TATAATCATTATATTATATA+TGG 0.328765 6_3:-86417701 Msa0962840:exon
AAACAAACAACAATATCATT+TGG 0.363384 6_3:-86417831 Msa0962840:five_prime_UTR
TATCATAAGCCATAAAAGTT+TGG 0.376145 6_3:-86414154 Msa0962840:CDS
CAAAATTAGGTCTTCCTAAT+GGG 0.382967 6_3:-86414113 Msa0962840:CDS
ATATGAATTTCCTTCCCATT+AGG 0.386629 6_3:+86414099 None:intergenic
GTTGAGAAAGAAGAAGGAAA+AGG 0.409108 6_3:-86414276 Msa0962840:CDS
TCATACTATAGAGGAGCATT+GGG 0.412063 6_3:-86414441 Msa0962840:CDS
CTAATTGGAGATTCTGGAGT+TGG 0.427347 6_3:-86417634 Msa0962840:CDS
TTGAGAAAGAAGAAGGAAAA+GGG 0.430619 6_3:-86414275 Msa0962840:CDS
TTCCACACCTATGGTTGGCT+TGG 0.432211 6_3:+86417561 None:intergenic
GGAAATCAAACCTTATTTCA+AGG 0.434954 6_3:-86417612 Msa0962840:CDS
CCAAAGGAAGAAGACTAATA+GGG 0.444264 6_3:+86417787 None:intergenic
CTCATACTATAGAGGAGCAT+TGG 0.460380 6_3:-86414442 Msa0962840:CDS
AGGGAAGTTGAGAAAGAAGA+AGG 0.471348 6_3:-86414282 Msa0962840:CDS
TAATTGGAGATTCTGGAGTT+GGG 0.471690 6_3:-86417633 Msa0962840:CDS
GCTCATCAAAGCACAAATAT+GGG 0.473052 6_3:-86417506 Msa0962840:CDS
GTAACCAAATTCCACACCTA+TGG 0.475678 6_3:+86417552 None:intergenic
AAACTGATTTGAGTCAATCA+AGG 0.488203 6_3:-86414302 Msa0962840:CDS
AGTTTGGAAGATAAAATGAA+TGG 0.501277 6_3:-86414138 Msa0962840:CDS
ATCACAAGCTCATACTATAG+AGG 0.512214 6_3:-86414450 Msa0962840:CDS
ATTAAAGGGTATTACAAAAG+AGG 0.515732 6_3:-86417763 Msa0962840:five_prime_UTR
TATTTAATACATCAAGCTCA+TGG 0.516891 6_3:-86413933 Msa0962840:three_prime_UTR
AAAGGGTTTGCAGAAAGAGA+AGG 0.525911 6_3:-86414258 Msa0962840:CDS
GTTTGGAAGATAAAATGAAT+GGG 0.531416 6_3:-86414137 Msa0962840:CDS
GTAATACCCTTTAATTCCAA+AGG 0.535151 6_3:+86417771 None:intergenic
TTTGCAAAATTTAAATGTTG+AGG 0.537036 6_3:-86414211 Msa0962840:CDS
TGCTAGTTTATGACATAACT+AGG 0.556603 6_3:-86414413 Msa0962840:CDS
CTTGATTCCAAGCCAACCAT+AGG 0.558383 6_3:-86417568 Msa0962840:CDS
CCAAATTCCACACCTATGGT+TGG 0.560911 6_3:+86417556 None:intergenic
ATTTGGTTACAAGAACATCA+AGG 0.563030 6_3:-86417539 Msa0962840:CDS
TCCAGAATCTCCAATTAGAA+CGG 0.576110 6_3:+86417639 None:intergenic
AAAGAGTTACCTCTCTTGGC+CGG 0.576145 6_3:+86417477 None:intergenic
AACTGATTTGAGTCAATCAA+GGG 0.588682 6_3:-86414301 Msa0962840:CDS
ATTAGGTCTTCCTAATGGGA+AGG 0.598159 6_3:-86414109 Msa0962840:CDS
GCACAAATATGGGACACTGC+CGG 0.604045 6_3:-86417496 Msa0962840:CDS
GGGACACTGCCGGCCAAGAG+AGG 0.610199 6_3:-86417486 Msa0962840:intron
TTCCAAGCCAACCATAGGTG+TGG 0.621032 6_3:-86417563 Msa0962840:CDS
AGGAAGAAGACTAATAGGGA+AGG 0.632828 6_3:+86417791 None:intergenic
ATACTATAGAGGAGCATTGG+GGG 0.641465 6_3:-86414439 Msa0962840:CDS
AGAATTTGGAAATGAAGACA+TGG 0.647401 6_3:-86414346 Msa0962840:CDS
CATACTATAGAGGAGCATTG+GGG 0.659725 6_3:-86414440 Msa0962840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTAATTTTTTTTTTTT+AGG - chr6_3:86415417-86415436 Msa0962840:intron 0.0%
!! ATTATAAATTTAATTATAAT+GGG - chr6_3:86415448-86415467 Msa0962840:intron 0.0%
!!! TAATATTGTTTTCTTTAAAT+AGG - chr6_3:86414326-86414345 Msa0962840:CDS 10.0%
!!! AATATTGTTTTCTTTAAATA+GGG - chr6_3:86414327-86414346 Msa0962840:CDS 10.0%
!! TATATAAATAGAATAATTTC+AGG - chr6_3:86415302-86415321 Msa0962840:intron 10.0%
!!! ATTTTTTTTTTTTAGGATAA+TGG - chr6_3:86415424-86415443 Msa0962840:intron 10.0%
!!! TTTTTTTTTTTTAGGATAAT+GGG - chr6_3:86415425-86415444 Msa0962840:intron 10.0%
!! AATTAGTACATAAATTAAAT+TGG - chr6_3:86416040-86416059 Msa0962840:intron 10.0%
!!! CTTTTGTTAATATAAAAAAA+TGG - chr6_3:86417381-86417400 Msa0962840:intron 10.0%
!! TCGTAAATAAATAAAACTAA+AGG - chr6_3:86415026-86415045 Msa0962840:intron 15.0%
!!! TTTTCTTTAACATAATTTAG+AGG + chr6_3:86415648-86415667 None:intergenic 15.0%
!!! TGTTTTTTCTTTTTAAGAAA+AGG + chr6_3:86415899-86415918 None:intergenic 15.0%
!!! AAAATAAAAAGCATTTTGAT+GGG + chr6_3:86417175-86417194 None:intergenic 15.0%
!!! TAAAATAAAAAGCATTTTGA+TGG + chr6_3:86417176-86417195 None:intergenic 15.0%
!!! TTTTTAAAACTTTACGATAT+TGG - chr6_3:86417201-86417220 Msa0962840:intron 15.0%
!!! TAAATATGTGTACAATTTTA+TGG - chr6_3:86417276-86417295 Msa0962840:intron 15.0%
!!! TGTATAATTTCTTTTACTTT+GGG - chr6_3:86417804-86417823 Msa0962840:five_prime_UTR 15.0%
!! AAACAAACAACAATATCATT+TGG - chr6_3:86413933-86413952 Msa0962840:three_prime_UTR 20.0%
!! GCTTAGAGATAAATTAATTA+AGG - chr6_3:86414034-86414053 Msa0962840:exon 20.0%
!! CAATAAGTATTCAAAAACTT+GGG + chr6_3:86414456-86414475 None:intergenic 20.0%
!! AAACATATGAAGCATAAATA+CGG - chr6_3:86414541-86414560 Msa0962840:intron 20.0%
!!! AGATCTTTTCAAATTATTGA+CGG + chr6_3:86414602-86414621 None:intergenic 20.0%
!! CATAAAAAGTTTATGAAACA+CGG + chr6_3:86414705-86414724 None:intergenic 20.0%
!! CAAAAACTAATTAAAAGTCA+GGG - chr6_3:86415176-86415195 Msa0962840:intron 20.0%
!!! TATAAGTTTGGTTATTTTTG+TGG - chr6_3:86415211-86415230 Msa0962840:intron 20.0%
!! ATAAATAGAATAATTTCAGG+TGG - chr6_3:86415305-86415324 Msa0962840:intron 20.0%
!!! TAAATAGAATAATTTCAGGT+GGG - chr6_3:86415306-86415325 Msa0962840:intron 20.0%
!! TAAATTATAAGCTTGACATT+AGG - chr6_3:86415358-86415377 Msa0962840:intron 20.0%
!!! TAATTTTTCGTCAAAAGAAA+AGG - chr6_3:86415389-86415408 Msa0962840:intron 20.0%
!! TTCTTATATCAATATCAACA+CGG - chr6_3:86415543-86415562 Msa0962840:intron 20.0%
!!! TTTTTTTCTCTTTTTTTACG+TGG - chr6_3:86416102-86416121 Msa0962840:intron 20.0%
!! TTGTTCCAAAAAATTAAACT+CGG + chr6_3:86416267-86416286 None:intergenic 20.0%
!!! TTTTTGGAACAATTTTTATC+AGG - chr6_3:86416275-86416294 Msa0962840:intron 20.0%
!! TAAAAAAAACCTAGTACATA+TGG - chr6_3:86416361-86416380 Msa0962840:intron 20.0%
!!! TTATTGAGTTATTGATTGTA+GGG + chr6_3:86416820-86416839 None:intergenic 20.0%
!!! ATTATTGAGTTATTGATTGT+AGG + chr6_3:86416821-86416840 None:intergenic 20.0%
!!! TGTCATTTAATTTCAATGAT+TGG - chr6_3:86416974-86416993 Msa0962840:intron 20.0%
!!! GAAATATTCCTTTCTTTTTA+TGG + chr6_3:86417124-86417143 None:intergenic 20.0%
!! TTTGCAAAATTTAAATGTTG+AGG - chr6_3:86417553-86417572 Msa0962840:CDS 20.0%
!!! TTTTATCTTCCAAACTTTTA+TGG + chr6_3:86417622-86417641 None:intergenic 20.0%
!!! CTGTATAATTTCTTTTACTT+TGG - chr6_3:86417803-86417822 Msa0962840:five_prime_UTR 20.0%
!!! ATTAAAGGGTATTACAAAAG+AGG - chr6_3:86414001-86414020 Msa0962840:three_prime_UTR 25.0%
!! CTTTTGTAAACCTTGAAATA+AGG + chr6_3:86414165-86414184 None:intergenic 25.0%
! GATATTGAAGACAAGAAAAA+GGG + chr6_3:86414387-86414406 None:intergenic 25.0%
! AGATATTGAAGACAAGAAAA+AGG + chr6_3:86414388-86414407 None:intergenic 25.0%
! AAACTTGGGTTACATAAATT+TGG + chr6_3:86414442-86414461 None:intergenic 25.0%
! CCAATAAGTATTCAAAAACT+TGG + chr6_3:86414457-86414476 None:intergenic 25.0%
!! CCAAGTTTTTGAATACTTAT+TGG - chr6_3:86414454-86414473 Msa0962840:CDS 25.0%
!! GTTTCATAAACTTTTTATGC+AGG - chr6_3:86414706-86414725 Msa0962840:intron 25.0%
!! GTCTTTTTGCTTTCTTTTTT+TGG - chr6_3:86414761-86414780 Msa0962840:intron 25.0%
!!! TTTCTTTTTTTGGCTTTAGT+TGG - chr6_3:86414771-86414790 Msa0962840:intron 25.0%
!! ACATATTCAGTTTTCAAAGT+TGG - chr6_3:86414819-86414838 Msa0962840:intron 25.0%
! AATTCAAGATATCGTTATCA+AGG + chr6_3:86415133-86415152 None:intergenic 25.0%
! GCAAAAACTAATTAAAAGTC+AGG - chr6_3:86415175-86415194 Msa0962840:intron 25.0%
! TAACCAAACTTATACTCAAT+TGG + chr6_3:86415205-86415224 None:intergenic 25.0%
! AACAAATGCTCAATATTTGA+AGG - chr6_3:86415493-86415512 Msa0962840:intron 25.0%
!! GAATTATGTAACACGTTTTA+AGG - chr6_3:86415575-86415594 Msa0962840:intron 25.0%
! AGCAAAATATGGTTATAAGT+TGG - chr6_3:86415756-86415775 Msa0962840:intron 25.0%
! GTCATCACATAACTAATTAA+TGG + chr6_3:86415817-86415836 None:intergenic 25.0%
! TGTCAAGATGATAGAAAATT+TGG + chr6_3:86415950-86415969 None:intergenic 25.0%
! TGATGAACTAAAATATAGTG+AGG + chr6_3:86416079-86416098 None:intergenic 25.0%
! TTTATTAAACTGAACTCAAG+CGG - chr6_3:86416205-86416224 Msa0962840:intron 25.0%
!! AAAAAATTAAACTCGGGTTT+TGG + chr6_3:86416260-86416279 None:intergenic 25.0%
!!! AAAACCCGAGTTTAATTTTT+TGG - chr6_3:86416259-86416278 Msa0962840:intron 25.0%
! TGTTCCAAAAAATTAAACTC+GGG + chr6_3:86416266-86416285 None:intergenic 25.0%
!! CATATTTTTCCATATGTACT+AGG + chr6_3:86416373-86416392 None:intergenic 25.0%
!! ATAGATCTAGACATTTTAAG+TGG + chr6_3:86416556-86416575 None:intergenic 25.0%
! GCATTGAATTGAAAATAACA+TGG + chr6_3:86416601-86416620 None:intergenic 25.0%
! AACAACTTTGTCATCTATTA+CGG - chr6_3:86417035-86417054 Msa0962840:intron 25.0%
!! AAGAGAAGGTTTATGTTTTA+TGG - chr6_3:86417520-86417539 Msa0962840:CDS 25.0%
!! TTTTATGGCTTATGATATCA+TGG + chr6_3:86417607-86417626 None:intergenic 25.0%
! TATCATAAGCCATAAAAGTT+TGG - chr6_3:86417610-86417629 Msa0962840:CDS 25.0%
! AGTTTGGAAGATAAAATGAA+TGG - chr6_3:86417626-86417645 Msa0962840:CDS 25.0%
! GTTTGGAAGATAAAATGAAT+GGG - chr6_3:86417627-86417646 Msa0962840:CDS 25.0%
! AAAATGAATGGGACAAAATT+AGG - chr6_3:86417638-86417657 Msa0962840:CDS 25.0%
!! AAACAAGTCAATTGTTGTTA+TGG - chr6_3:86417710-86417729 Msa0962840:five_prime_UTR 25.0%
! TATTTAATACATCAAGCTCA+TGG - chr6_3:86417831-86417850 Msa0962840:five_prime_UTR 25.0%
!! TCTTCTTCCTTTGGAATTAA+AGG - chr6_3:86413986-86414005 Msa0962840:three_prime_UTR 30.0%
!! CTTCTTCCTTTGGAATTAAA+GGG - chr6_3:86413987-86414006 Msa0962840:three_prime_UTR 30.0%
GTAATACCCTTTAATTCCAA+AGG + chr6_3:86413996-86414015 None:intergenic 30.0%
! GGAAATCAAACCTTATTTCA+AGG - chr6_3:86414152-86414171 Msa0962840:CDS 30.0%
ATTTGGTTACAAGAACATCA+AGG - chr6_3:86414225-86414244 Msa0962840:CDS 30.0%
TGTCTTCAATATCTTAGCAA+AGG - chr6_3:86414394-86414413 Msa0962840:CDS 30.0%
CCGAATATGATAGATAAAAC+CGG + chr6_3:86414493-86414512 None:intergenic 30.0%
!! CCGGTTTTATCTATCATATT+CGG - chr6_3:86414490-86414509 Msa0962840:intron 30.0%
TTCACTGTAATTATACGTGT+CGG - chr6_3:86414627-86414646 Msa0962840:intron 30.0%
TATCAGACACAACAAATATC+TGG - chr6_3:86414650-86414669 Msa0962840:intron 30.0%
ACACAACAAATATCTGGTAT+CGG - chr6_3:86414656-86414675 Msa0962840:intron 30.0%
!! CAAAAAGACTAGAAGTATCA+TGG + chr6_3:86414750-86414769 None:intergenic 30.0%
TTTCAAAGTTGGCGTTTATT+TGG - chr6_3:86414830-86414849 Msa0962840:intron 30.0%
AATGCAGCAACAAACAAAAA+GGG + chr6_3:86414962-86414981 None:intergenic 30.0%
AAATGCAGCAACAAACAAAA+AGG + chr6_3:86414963-86414982 None:intergenic 30.0%
TTGCCAATTGAGTATAAGTT+TGG - chr6_3:86415199-86415218 Msa0962840:intron 30.0%
TGATTGAAAGTCAAAATCGA+AGG + chr6_3:86415700-86415719 None:intergenic 30.0%
TGACTTTCAATCATTTCTTG+AGG - chr6_3:86415707-86415726 Msa0962840:intron 30.0%
TTTCAATCATTTCTTGAGGA+AGG - chr6_3:86415711-86415730 Msa0962840:intron 30.0%
TTCAATCATTTCTTGAGGAA+GGG - chr6_3:86415712-86415731 Msa0962840:intron 30.0%
ACTCAAACTATCGAATAGAA+TGG - chr6_3:86416165-86416184 Msa0962840:intron 30.0%
AAACTATCGAATAGAATGGA+AGG - chr6_3:86416169-86416188 Msa0962840:intron 30.0%
AACTATCGAATAGAATGGAA+GGG - chr6_3:86416170-86416189 Msa0962840:intron 30.0%
! TTTTCTTCTATACAAACCAG+AGG - chr6_3:86416336-86416355 Msa0962840:intron 30.0%
TTTCTTCTATACAAACCAGA+GGG - chr6_3:86416337-86416356 Msa0962840:intron 30.0%
!! ATCTAGACATTTTAAGTGGT+GGG + chr6_3:86416552-86416571 None:intergenic 30.0%
!! GCAAATCTTTGATTTGAGTA+AGG - chr6_3:86416619-86416638 Msa0962840:intron 30.0%
!! ATCTTTGATTTGAGTAAGGT+TGG - chr6_3:86416623-86416642 Msa0962840:intron 30.0%
!! TCTTTGATTTGAGTAAGGTT+GGG - chr6_3:86416624-86416643 Msa0962840:intron 30.0%
! GAAAAGCATGTGACATAAAA+TGG - chr6_3:86416781-86416800 Msa0962840:intron 30.0%
! CATGTGACATAAAATGGTTT+TGG - chr6_3:86416787-86416806 Msa0962840:intron 30.0%
ATTGTGTAAAATGATTGCTG+AGG - chr6_3:86416895-86416914 Msa0962840:intron 30.0%
GATTCACACCATAAAAAGAA+AGG - chr6_3:86417113-86417132 Msa0962840:intron 30.0%
!!! AAAAGCATTTTGATGGGATA+TGG + chr6_3:86417169-86417188 None:intergenic 30.0%
CAAGCAATGATCATAATTGA+AGG + chr6_3:86417231-86417250 None:intergenic 30.0%
! TGTGTACAATTTTATGGTGT+AGG - chr6_3:86417282-86417301 Msa0962840:intron 30.0%
! TGCTAGTTTATGACATAACT+AGG - chr6_3:86417351-86417370 Msa0962840:intron 30.0%
TTACATGAGCTTAGAGAATT+TGG - chr6_3:86417404-86417423 Msa0962840:intron 30.0%
AGAATTTGGAAATGAAGACA+TGG - chr6_3:86417418-86417437 Msa0962840:intron 30.0%
!! AAACTGATTTGAGTCAATCA+AGG - chr6_3:86417462-86417481 Msa0962840:intron 30.0%
!! AACTGATTTGAGTCAATCAA+GGG - chr6_3:86417463-86417482 Msa0962840:intron 30.0%
TTGAGAAAGAAGAAGGAAAA+GGG - chr6_3:86417489-86417508 Msa0962840:CDS 30.0%
ACAAAATTAGGTCTTCCTAA+TGG - chr6_3:86417650-86417669 Msa0962840:CDS 30.0%
CAAAATTAGGTCTTCCTAAT+GGG - chr6_3:86417651-86417670 Msa0962840:CDS 30.0%
ATATGAATTTCCTTCCCATT+AGG + chr6_3:86417668-86417687 None:intergenic 30.0%
CCAAAGGAAGAAGACTAATA+GGG + chr6_3:86413980-86413999 None:intergenic 35.0%
TCCAAAGGAAGAAGACTAAT+AGG + chr6_3:86413981-86414000 None:intergenic 35.0%
!!! CAATTAGAACGGTTTTGAAG+AGG + chr6_3:86414117-86414136 None:intergenic 35.0%
CTCTTCAAAACCGTTCTAAT+TGG - chr6_3:86414115-86414134 Msa0962840:CDS 35.0%
TCCAGAATCTCCAATTAGAA+CGG + chr6_3:86414128-86414147 None:intergenic 35.0%
!! TAATTGGAGATTCTGGAGTT+GGG - chr6_3:86414131-86414150 Msa0962840:CDS 35.0%
AGCTCATCAAAGCACAAATA+TGG - chr6_3:86414257-86414276 Msa0962840:CDS 35.0%
GCTCATCAAAGCACAAATAT+GGG - chr6_3:86414258-86414277 Msa0962840:CDS 35.0%
TGAAAAAGAGTTACCTCTCT+TGG + chr6_3:86414294-86414313 None:intergenic 35.0%
!!! TAGCAAAGGTTTTGTTTCGA+TGG - chr6_3:86414408-86414427 Msa0962840:CDS 35.0%
TATTGGAACAATCATTCGTC+CGG - chr6_3:86414471-86414490 Msa0962840:intron 35.0%
ATGTTAGTGCTAGTTGGAAA+AGG + chr6_3:86414803-86414822 None:intergenic 35.0%
CTGAATATGTTAGTGCTAGT+TGG + chr6_3:86414809-86414828 None:intergenic 35.0%
TGTTTGTGGGATGTAGATAA+GGG + chr6_3:86414930-86414949 None:intergenic 35.0%
TTATCAAGGTCACGTATATG+AGG + chr6_3:86415119-86415138 None:intergenic 35.0%
TGATAATCCCATTATCACCA+AGG + chr6_3:86415333-86415352 None:intergenic 35.0%
TGGATTATTGCAATGTGTCA+TGG - chr6_3:86415776-86415795 Msa0962840:intron 35.0%
TTATGTGATGACAGTTGTCA+TGG - chr6_3:86415825-86415844 Msa0962840:intron 35.0%
GATGATAGAAAATTTGGACG+AGG + chr6_3:86415944-86415963 None:intergenic 35.0%
!!! CTTTTTTTACGTGGAAGTGT+AGG - chr6_3:86416111-86416130 Msa0962840:intron 35.0%
!! TCTAGACATTTTAAGTGGTG+GGG + chr6_3:86416551-86416570 None:intergenic 35.0%
!! GATCTAGACATTTTAAGTGG+TGG + chr6_3:86416553-86416572 None:intergenic 35.0%
AAACCAAGTCGACTATCAAT+TGG - chr6_3:86416753-86416772 Msa0962840:intron 35.0%
! TGAGTTATTGATTGTAGGGT+TGG + chr6_3:86416816-86416835 None:intergenic 35.0%
CTCTAAGTGAATGTCATGTT+TGG + chr6_3:86416867-86416886 None:intergenic 35.0%
TTCCTAAAGAAAATCTCACG+AGG - chr6_3:86417012-86417031 Msa0962840:intron 35.0%
! TTCCTCGTGAGATTTTCTTT+AGG + chr6_3:86417017-86417036 None:intergenic 35.0%
ATCACAAGCTCATACTATAG+AGG - chr6_3:86417314-86417333 Msa0962840:intron 35.0%
!! TCATACTATAGAGGAGCATT+GGG - chr6_3:86417323-86417342 Msa0962840:intron 35.0%
GTTGAGAAAGAAGAAGGAAA+AGG - chr6_3:86417488-86417507 Msa0962840:CDS 35.0%
AGGAAGAAGACTAATAGGGA+AGG + chr6_3:86413976-86413995 None:intergenic 40.0%
!! CCCTATTAGTCTTCTTCCTT+TGG - chr6_3:86413977-86413996 Msa0962840:three_prime_UTR 40.0%
ACCGTTCTAATTGGAGATTC+TGG - chr6_3:86414124-86414143 Msa0962840:CDS 40.0%
!! CTAATTGGAGATTCTGGAGT+TGG - chr6_3:86414130-86414149 Msa0962840:CDS 40.0%
GTAACCAAATTCCACACCTA+TGG + chr6_3:86414215-86414234 None:intergenic 40.0%
! CTATCATATTCGGTCGACTT+TGG - chr6_3:86414500-86414519 Msa0962840:intron 40.0%
TGAAGCATAAATACGGACAC+TGG - chr6_3:86414548-86414567 Msa0962840:intron 40.0%
TATGAAACACGGATACTCCT+CGG + chr6_3:86414694-86414713 None:intergenic 40.0%
GTGTTTGTGGGATGTAGATA+AGG + chr6_3:86414931-86414950 None:intergenic 40.0%
TATCTACATCCCACAAACAC+TGG - chr6_3:86414931-86414950 Msa0962840:intron 40.0%
AGCAACAAACAAAAAGGGTG+GGG + chr6_3:86414957-86414976 None:intergenic 40.0%
CAGCAACAAACAAAAAGGGT+GGG + chr6_3:86414958-86414977 None:intergenic 40.0%
! AATAATTTCAGGTGGGACCT+TGG - chr6_3:86415313-86415332 Msa0962840:intron 40.0%
GCGAACTGGTTAGCAAAATA+TGG - chr6_3:86415745-86415764 Msa0962840:intron 40.0%
! GTAATCTAGAGTTCGATCGA+AGG + chr6_3:86416310-86416329 None:intergenic 40.0%
!!! CTAGGTTTTTTTTAGCCCTC+TGG + chr6_3:86416355-86416374 None:intergenic 40.0%
! TTGATTTGAGTAAGGTTGGG+TGG - chr6_3:86416627-86416646 Msa0962840:intron 40.0%
TGATTTGAGTAAGGTTGGGT+GGG - chr6_3:86416628-86416647 Msa0962840:intron 40.0%
ACGGTCATATGTACCTAACT+CGG - chr6_3:86417054-86417073 Msa0962840:intron 40.0%
! CTCATACTATAGAGGAGCAT+TGG - chr6_3:86417322-86417341 Msa0962840:intron 40.0%
!! CATACTATAGAGGAGCATTG+GGG - chr6_3:86417324-86417343 Msa0962840:intron 40.0%
!! ATACTATAGAGGAGCATTGG+GGG - chr6_3:86417325-86417344 Msa0962840:intron 40.0%
AGGGAAGTTGAGAAAGAAGA+AGG - chr6_3:86417482-86417501 Msa0962840:intron 40.0%
AAAGGGTTTGCAGAAAGAGA+AGG - chr6_3:86417506-86417525 Msa0962840:CDS 40.0%
ATTAGGTCTTCCTAATGGGA+AGG - chr6_3:86417655-86417674 Msa0962840:CDS 40.0%
CTTGATTCCAAGCCAACCAT+AGG - chr6_3:86414196-86414215 Msa0962840:CDS 45.0%
CCAAATTCCACACCTATGGT+TGG + chr6_3:86414211-86414230 None:intergenic 45.0%
CCAACCATAGGTGTGGAATT+TGG - chr6_3:86414208-86414227 Msa0962840:CDS 45.0%
AAAGAGTTACCTCTCTTGGC+CGG + chr6_3:86414290-86414309 None:intergenic 45.0%
GCAGCAACAAACAAAAAGGG+TGG + chr6_3:86414959-86414978 None:intergenic 45.0%
AGGGAAACAATTGTGCGAAC+TGG - chr6_3:86415731-86415750 Msa0962840:intron 45.0%
AAGCGGTTAACGATCCTAGA+AGG - chr6_3:86416222-86416241 Msa0962840:intron 45.0%
GGCGAACAATTTGTCCTTCT+AGG + chr6_3:86416239-86416258 None:intergenic 45.0%
GATTTGAGTAAGGTTGGGTG+GGG - chr6_3:86416629-86416648 Msa0962840:intron 45.0%
! GTGGGTCTAGGACAAGAATT+GGG - chr6_3:86416651-86416670 Msa0962840:intron 45.0%
! CGACCAATTGATAGTCGACT+TGG + chr6_3:86416759-86416778 None:intergenic 45.0%
AGTCGACTATCAATTGGTCG+AGG - chr6_3:86416759-86416778 Msa0962840:intron 45.0%
CGGTCATATGTACCTAACTC+GGG - chr6_3:86417055-86417074 Msa0962840:intron 45.0%
!! TATAATCATTATATTATATA+TGG - chr6_3:86414063-86414082 Msa0962840:CDS 5.0%
!! GATTATAAATTTAATTATAA+TGG - chr6_3:86415447-86415466 Msa0962840:intron 5.0%
TTCCAAGCCAACCATAGGTG+TGG - chr6_3:86414201-86414220 Msa0962840:CDS 50.0%
! TTCCACACCTATGGTTGGCT+TGG + chr6_3:86414206-86414225 None:intergenic 50.0%
GCACAAATATGGGACACTGC+CGG - chr6_3:86414268-86414287 Msa0962840:CDS 50.0%
TACGGACACTGGACACGAAA+CGG - chr6_3:86414559-86414578 Msa0962840:intron 50.0%
ATCGGAACACACCTAATCCG+AGG - chr6_3:86414674-86414693 Msa0962840:intron 50.0%
ACACGGATACTCCTCGGATT+AGG + chr6_3:86414688-86414707 None:intergenic 50.0%
! AGGTGGGACCTTGGTGATAA+TGG - chr6_3:86415322-86415341 Msa0962840:intron 50.0%
! GGTGGGACCTTGGTGATAAT+GGG - chr6_3:86415323-86415342 Msa0962840:intron 50.0%
! GGTGGGTCTAGGACAAGAAT+TGG - chr6_3:86416650-86416669 Msa0962840:intron 50.0%
CGAAACTAGTCACCCGAGTT+AGG + chr6_3:86417070-86417089 None:intergenic 50.0%
TTGAGTAAGGTTGGGTGGGG+TGG - chr6_3:86416632-86416651 Msa0962840:intron 55.0%
TGAGTAAGGTTGGGTGGGGT+GGG - chr6_3:86416633-86416652 Msa0962840:intron 55.0%
AGGGTGGGGCCAGTGTTTGT+GGG + chr6_3:86414943-86414962 None:intergenic 60.0%
AAGGGTGGGGCCAGTGTTTG+TGG + chr6_3:86414944-86414963 None:intergenic 60.0%
AGGTTGGGTGGGGTGGGTCT+AGG - chr6_3:86416639-86416658 Msa0962840:intron 65.0%
GGGACACTGCCGGCCAAGAG+AGG - chr6_3:86414278-86414297 Msa0962840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 86413926 86417860 86413926 ID=Msa0962840;Name=Msa0962840
chr6_3 mRNA 86413926 86417860 86413926 ID=Msa0962840-mRNA-1;Parent=Msa0962840;Name=Msa0962840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=156|1|1|1|1|1|2|124|216
chr6_3 exon 86413926 86414482 86413926 ID=Msa0962840-mRNA-1:exon:15642;Parent=Msa0962840-mRNA-1
chr6_3 exon 86417487 86417860 86417487 ID=Msa0962840-mRNA-1:exon:15641;Parent=Msa0962840-mRNA-1
chr6_3 five_prime_UTR 86417705 86417860 86417705 ID=Msa0962840-mRNA-1:five_prime_utr;Parent=Msa0962840-mRNA-1
chr6_3 CDS 86417487 86417704 86417487 ID=Msa0962840-mRNA-1:cds;Parent=Msa0962840-mRNA-1
chr6_3 CDS 86414050 86414482 86414050 ID=Msa0962840-mRNA-1:cds;Parent=Msa0962840-mRNA-1
chr6_3 three_prime_UTR 86413926 86414049 86413926 ID=Msa0962840-mRNA-1:three_prime_utr;Parent=Msa0962840-mRNA-1
Gene Sequence

>Msa0962840

ATGGCTGATACATTTGATGAGCAGTGTGATTACCTCTTCAAAACCGTTCTAATTGGAGATTCTGGAGTTGGGAAATCAAACCTTATTTCAAGGTTTACAAAAGATGAATTTCGACTTGATTCCAAGCCAACCATAGGTGTGGAATTTGGTTACAAGAACATCAAGGTTAGAGACAAGCTCATCAAAGCACAAATATGGGACACTGCCGGCCAAGAGAGGTTTAGAGCTATCACAAGCTCATACTATAGAGGAGCATTGGGGGCAATGCTAGTTTATGACATAACTAGGATAGTAACTTTTGTTAATATAAAAAAATGGTTACATGAGCTTAGAGAATTTGGAAATGAAGACATGGTGATCATTCTAGTAGCAAATAAAACTGATTTGAGTCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTTTGCAGAAAGAGAAGGTTTATGTTTTATGGAAACTTCTGCTTTGCAAAATTTAAATGTTGAGGATGCATTCTTAGAAATGATTACTAAGATCCATGATATCATAAGCCATAAAAGTTTGGAAGATAAAATGAATGGGACAAAATTAGGTCTTCCTAATGGGAAGGAAATTCATATAGCTGATGAAGTGACTGCTACTAAACAAGTCAATTGTTGTTATGGATGA
Protein sequence

>Msa0962840

MADTFDEQCDYLFKTVLIGDSGVGKSNLISRFTKDEFRLDSKPTIGVEFGYKNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRIVTFVNIKKWLHELREFGNEDMVIILVANKTDLSQSREVEKEEGKGFAEREGLCFMETSALQNLNVEDAFLEMITKIHDIISHKSLEDKMNGTKLGLPNGKEIHIADEVTATKQVNCCYG*