Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650370 | XP_013456758.1 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650370 | A0A072ULX9 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa0650370 | 0.814897 | 1.218898e-51 | -8.615850e-47 |
| Msa0610000 | Msa0650370 | 0.878840 | 2.027962e-69 | -8.615850e-47 |
| Msa0648670 | Msa0650370 | 0.814134 | 1.798155e-51 | -8.615850e-47 |
| Msa0650370 | Msa0943180 | 0.827531 | 1.486100e-54 | -8.615850e-47 |
| Msa0650370 | Msa1116940 | 0.837340 | 5.507325e-57 | -8.615850e-47 |
| Msa0650370 | Msa1136880 | 0.813421 | 2.581304e-51 | -8.615850e-47 |
| Msa0650370 | Msa1257450 | 0.830547 | 2.761771e-55 | -8.615850e-47 |
| Msa0650370 | Msa1305260 | 0.805741 | 1.153022e-49 | -8.615850e-47 |
| Msa0650370 | Msa1456160 | 0.980006 | 3.113804e-149 | -8.615850e-47 |
| Msa0309000 | Msa0650370 | 0.809768 | 1.607493e-50 | -8.615850e-47 |
| Msa0528750 | Msa0650370 | 0.996419 | 2.717859e-227 | -8.615850e-47 |
| Msa0528820 | Msa0650370 | 0.971322 | 5.557208e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650370 | MtrunA17_Chr4g0042691 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650370 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.32e-27 | 107 |
| Msa0650370 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 304 | 362 | 82 | 140 | 3.82e-26 | 103 |
| Msa0650370 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 148 | 237 | 51 | 140 | 1.19e-18 | 83.2 |
| Msa0650370 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 9.10e-18 | 80.5 |
| Msa0650370 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 306 | 379 | 80 | 152 | 2.65e-14 | 70.5 |
| Msa0650370 | AT5G02210.1 | 40.000 | 75 | 42 | 1 | 175 | 246 | 74 | 148 | 4.94e-11 | 61.2 |
| Msa0650370 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.67e-14 | 69.7 |
| Msa0650370 | AT5G57640.1 | 38.129 | 139 | 62 | 5 | 245 | 365 | 13 | 145 | 5.37e-14 | 71.2 |
| Msa0650370 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 1.86e-13 | 69.7 |
Find 131 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | 4_3:+57252823 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | 4_3:-57252621 | Msa0650370:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | 4_3:-57251336 | Msa0650370:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | 4_3:+57249924 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | 4_3:+57252885 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | 4_3:+57252886 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | 4_3:+57250204 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | 4_3:-57251455 | Msa0650370:CDS |
| TTTAAATAGGTGTTATGAAT+TGG | 0.263964 | 4_3:+57249788 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | 4_3:+57252829 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | 4_3:+57252828 | None:intergenic |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | 4_3:-57250316 | Msa0650370:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | 4_3:+57251290 | None:intergenic |
| GACTCCGGTGGTGGTTGATT+GGG | 0.354635 | 4_3:+57252853 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | 4_3:+57251289 | None:intergenic |
| TTGCTCTTCGACGCGCTTCT+CGG | 0.361977 | 4_3:+57251277 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | 4_3:-57252560 | Msa0650370:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | 4_3:+57252810 | None:intergenic |
| AGGGGCTTCTTGTTGATTCT+CGG | 0.366247 | 4_3:+57252525 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | 4_3:+57250228 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | 4_3:+57251304 | None:intergenic |
| AGACTCCGGTGGTGGTTGAT+TGG | 0.385111 | 4_3:+57252852 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | 4_3:-57252581 | Msa0650370:CDS |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | 4_3:-57249929 | Msa0650370:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | 4_3:+57252767 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | 4_3:+57252609 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | 4_3:-57251424 | Msa0650370:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | 4_3:+57252816 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | 4_3:+57251447 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | 4_3:-57251364 | Msa0650370:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | 4_3:-57252744 | Msa0650370:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | 4_3:-57251365 | Msa0650370:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | 4_3:+57252873 | None:intergenic |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | 4_3:+57251506 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | 4_3:-57251423 | Msa0650370:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | 4_3:-57250133 | Msa0650370:CDS |
| GAGGATGGGTCCGTAGTAAT+CGG | 0.451688 | 4_3:+57250014 | None:intergenic |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | 4_3:+57252610 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | 4_3:-57252743 | Msa0650370:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | 4_3:-57252620 | Msa0650370:CDS |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | 4_3:+57252537 | None:intergenic |
| TAGGTGTTATGAATTGGAAT+AGG | 0.458703 | 4_3:+57249794 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | 4_3:-57250134 | Msa0650370:CDS |
| GCCCTCAAAGCAAGCTGAAA+AGG | 0.468090 | 4_3:-57251534 | Msa0650370:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | 4_3:+57251310 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | 4_3:-57252656 | Msa0650370:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | 4_3:-57251335 | Msa0650370:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | 4_3:-57251486 | Msa0650370:CDS |
| TGAAAAGGAGCAACCAGCTC+CGG | 0.488322 | 4_3:-57251519 | Msa0650370:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | 4_3:-57252644 | Msa0650370:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | 4_3:-57250195 | Msa0650370:CDS |
| GGTTCGGGAGACTCCGGTGG+TGG | 0.501484 | 4_3:+57252844 | None:intergenic |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | 4_3:-57249971 | Msa0650370:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | 4_3:+57251251 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | 4_3:-57250229 | Msa0650370:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | 4_3:+57250000 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | 4_3:-57249751 | Msa0650370:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | 4_3:-57252566 | Msa0650370:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.516638 | 4_3:+57252838 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | 4_3:+57249902 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | 4_3:-57252821 | Msa0650370:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | 4_3:-57252826 | Msa0650370:CDS |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | 4_3:-57249745 | Msa0650370:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | 4_3:-57251484 | Msa0650370:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | 4_3:-57251449 | Msa0650370:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | 4_3:+57251252 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.533119 | 4_3:+57252531 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | 4_3:-57250202 | Msa0650370:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | 4_3:-57250073 | Msa0650370:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | 4_3:+57250047 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | 4_3:-57252805 | Msa0650370:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | 4_3:-57250232 | Msa0650370:CDS |
| ATAAAGTAAGGAACAAGGCA+AGG | 0.545331 | 4_3:-57252995 | None:intergenic |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | 4_3:-57250115 | Msa0650370:CDS |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | 4_3:+57249963 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | 4_3:-57251485 | Msa0650370:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | 4_3:-57251507 | Msa0650370:CDS |
| GTGTTATGAATTGGAATAGG+TGG | 0.553552 | 4_3:+57249797 | None:intergenic |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | 4_3:+57252879 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | 4_3:-57252769 | Msa0650370:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | 4_3:-57250185 | Msa0650370:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | 4_3:+57249901 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | 4_3:+57249999 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | 4_3:+57252868 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | 4_3:-57251483 | Msa0650370:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | 4_3:-57251399 | Msa0650370:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | 4_3:-57252596 | Msa0650370:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.570486 | 4_3:+57252534 | None:intergenic |
| GGTGGTGGTTGATTGGGAAG+AGG | 0.571966 | 4_3:+57252859 | None:intergenic |
| GATTCTCATTCCGATTACTA+CGG | 0.572132 | 4_3:-57250024 | Msa0650370:CDS |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | 4_3:-57250213 | Msa0650370:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | 4_3:-57250159 | Msa0650370:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | 4_3:-57250165 | Msa0650370:CDS |
| TCTGGTTCGGGAGACTCCGG+TGG | 0.575115 | 4_3:+57252841 | None:intergenic |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | 4_3:-57250186 | Msa0650370:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | 4_3:-57251387 | Msa0650370:CDS |
| TCTTCCCAATCAACCACCAC+CGG | 0.583567 | 4_3:-57252857 | Msa0650370:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | 4_3:-57251432 | Msa0650370:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | 4_3:-57250325 | Msa0650370:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | 4_3:-57251576 | Msa0650370:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | 4_3:+57252813 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | 4_3:-57251567 | Msa0650370:CDS |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | 4_3:-57250121 | Msa0650370:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | 4_3:-57252796 | Msa0650370:CDS |
| TTACTACGGACCCATCCTCA+TGG | 0.605217 | 4_3:-57250010 | Msa0650370:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | 4_3:-57251405 | Msa0650370:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | 4_3:-57250205 | Msa0650370:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | 4_3:-57252914 | Msa0650370:CDS |
| GGCTTCTTGTTGATTCTCGG+CGG | 0.626976 | 4_3:+57252528 | None:intergenic |
| TAAAGTAAGGAACAAGGCAA+GGG | 0.628276 | 4_3:-57252994 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | 4_3:+57252887 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | 4_3:-57252775 | Msa0650370:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.632779 | 4_3:+57251253 | None:intergenic |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | 4_3:-57252772 | Msa0650370:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.645801 | 4_3:-57251516 | Msa0650370:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | 4_3:-57252617 | Msa0650370:CDS |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | 4_3:+57249903 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | 4_3:+57249995 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | 4_3:-57250162 | Msa0650370:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | 4_3:-57251489 | Msa0650370:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | 4_3:-57251492 | Msa0650370:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | 4_3:-57249750 | Msa0650370:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | 4_3:+57249818 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | 4_3:+57251564 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | 4_3:+57250125 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | 4_3:+57250313 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | 4_3:-57250097 | Msa0650370:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | 4_3:+57251337 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | 4_3:+57251415 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | 4_3:-57252683 | Msa0650370:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | 4_3:-57251363 | Msa0650370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAATTGATAAAATT+AGG | - | chr4_3:57250325-57250344 | Msa0650370:intron | 10.0% |
| !!! | TTGTTTTTTAATTTTTGATA+TGG | - | chr4_3:57250474-57250493 | Msa0650370:intron | 10.0% |
| !! | ATATAAAATAAAAATAGGAA+TGG | + | chr4_3:57251512-57251531 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | - | chr4_3:57252380-57252399 | Msa0650370:intron | 10.0% |
| !!! | TTTTATCAATTGAAATATGT+GGG | + | chr4_3:57250323-57250342 | None:intergenic | 15.0% |
| !!! | ATTTTATCAATTGAAATATG+TGG | + | chr4_3:57250324-57250343 | None:intergenic | 15.0% |
| !!! | TTCTATTTAATTTGTTGATT+TGG | - | chr4_3:57250751-57250770 | Msa0650370:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | - | chr4_3:57250752-57250771 | Msa0650370:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | - | chr4_3:57251723-57251742 | Msa0650370:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | + | chr4_3:57250223-57250242 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | + | chr4_3:57250224-57250243 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | - | chr4_3:57250424-57250443 | Msa0650370:intron | 20.0% |
| !! | TAATAAGTGGAATTACTAAT+AGG | - | chr4_3:57251673-57251692 | Msa0650370:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | + | chr4_3:57252861-57252880 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+TGG | + | chr4_3:57252941-57252960 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | + | chr4_3:57252954-57252973 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | - | chr4_3:57250105-57250124 | Msa0650370:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | - | chr4_3:57250106-57250125 | Msa0650370:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | + | chr4_3:57250222-57250241 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | - | chr4_3:57250408-57250427 | Msa0650370:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | - | chr4_3:57250488-57250507 | Msa0650370:intron | 25.0% |
| ! | TTTGAGAATCGTTAATAATG+AGG | - | chr4_3:57250640-57250659 | Msa0650370:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | - | chr4_3:57250666-57250685 | Msa0650370:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | - | chr4_3:57250667-57250686 | Msa0650370:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | - | chr4_3:57250835-57250854 | Msa0650370:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | - | chr4_3:57250836-57250855 | Msa0650370:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | - | chr4_3:57250876-57250895 | Msa0650370:intron | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | + | chr4_3:57251477-57251496 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | - | chr4_3:57251863-57251882 | Msa0650370:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | - | chr4_3:57251864-57251883 | Msa0650370:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | - | chr4_3:57251865-57251884 | Msa0650370:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | + | chr4_3:57252035-57252054 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | - | chr4_3:57252040-57252059 | Msa0650370:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | - | chr4_3:57252122-57252141 | Msa0650370:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | + | chr4_3:57252256-57252275 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | + | chr4_3:57250159-57250178 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | + | chr4_3:57250558-57250577 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | - | chr4_3:57250576-57250595 | Msa0650370:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | + | chr4_3:57250625-57250644 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | - | chr4_3:57250688-57250707 | Msa0650370:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | - | chr4_3:57250815-57250834 | Msa0650370:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | + | chr4_3:57251476-57251495 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | + | chr4_3:57251478-57251497 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | + | chr4_3:57251581-57251600 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | - | chr4_3:57251660-57251679 | Msa0650370:intron | 30.0% |
| !! | TTGTTGATGATTTATGCCTT+AGG | - | chr4_3:57251776-57251795 | Msa0650370:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | - | chr4_3:57251891-57251910 | Msa0650370:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | - | chr4_3:57251948-57251967 | Msa0650370:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | + | chr4_3:57252110-57252129 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | + | chr4_3:57252172-57252191 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | - | chr4_3:57252258-57252277 | Msa0650370:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | + | chr4_3:57252682-57252701 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | - | chr4_3:57252797-57252816 | Msa0650370:CDS | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | + | chr4_3:57252827-57252846 | None:intergenic | 30.0% | |
| ! | TAGGTGTTATGAATTGGAAT+AGG | + | chr4_3:57252935-57252954 | None:intergenic | 30.0% |
| TAACTTTGTATGAGAGAAAG+AGG | - | chr4_3:57252975-57252994 | Msa0650370:five_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | - | chr4_3:57252976-57252995 | Msa0650370:five_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | - | chr4_3:57250070-57250089 | Msa0650370:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | - | chr4_3:57250160-57250179 | Msa0650370:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | + | chr4_3:57250584-57250603 | None:intergenic | 35.0% | |
| TATGGTACCTAGTACTTGTT+TGG | - | chr4_3:57250594-57250613 | Msa0650370:intron | 35.0% | |
| TACCTAGTACTTGTTTGGTT+TGG | - | chr4_3:57250599-57250618 | Msa0650370:intron | 35.0% | |
| !! | TCTGTGTGTTTGACTTCTTT+TGG | - | chr4_3:57250722-57250741 | Msa0650370:intron | 35.0% |
| !! | CTGTGTGTTTGACTTCTTTT+GGG | - | chr4_3:57250723-57250742 | Msa0650370:intron | 35.0% |
| AGTAGCGCTATTTAGTTAGT+GGG | + | chr4_3:57250918-57250937 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | - | chr4_3:57251018-57251037 | Msa0650370:intron | 35.0% |
| CAGTTACTCAGATATAGTGA+TGG | - | chr4_3:57251061-57251080 | Msa0650370:intron | 35.0% | |
| !! | ACTCAGATATAGTGATGGAT+TGG | - | chr4_3:57251066-57251085 | Msa0650370:intron | 35.0% |
| !! | CTCAGATATAGTGATGGATT+GGG | - | chr4_3:57251067-57251086 | Msa0650370:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | + | chr4_3:57251425-57251444 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | - | chr4_3:57251740-57251759 | Msa0650370:intron | 35.0% | |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | - | chr4_3:57252066-57252085 | Msa0650370:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | + | chr4_3:57252164-57252183 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | + | chr4_3:57252168-57252187 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | + | chr4_3:57252262-57252281 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | - | chr4_3:57252327-57252346 | Msa0650370:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | - | chr4_3:57252328-57252347 | Msa0650370:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | + | chr4_3:57252481-57252500 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | - | chr4_3:57252680-57252699 | Msa0650370:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+CGG | - | chr4_3:57252702-57252721 | Msa0650370:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | + | chr4_3:57252826-57252845 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | + | chr4_3:57252828-57252847 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | + | chr4_3:57252911-57252930 | None:intergenic | 35.0% | |
| GTGTTATGAATTGGAATAGG+TGG | + | chr4_3:57252932-57252951 | None:intergenic | 35.0% | |
| GATGAAGAAGAAGGAGAATG+CGG | - | chr4_3:57249930-57249949 | Msa0650370:exon | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | - | chr4_3:57249951-57249970 | Msa0650370:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | - | chr4_3:57249954-57249973 | Msa0650370:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | - | chr4_3:57250082-57250101 | Msa0650370:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | - | chr4_3:57250109-57250128 | Msa0650370:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | - | chr4_3:57250145-57250164 | Msa0650370:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | - | chr4_3:57250166-57250185 | Msa0650370:CDS | 40.0% | |
| ACTGTGTATCAGTGTATGAG+AGG | - | chr4_3:57250375-57250394 | Msa0650370:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | - | chr4_3:57250381-57250400 | Msa0650370:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | - | chr4_3:57250382-57250401 | Msa0650370:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | + | chr4_3:57250543-57250562 | None:intergenic | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | + | chr4_3:57250798-57250817 | None:intergenic | 40.0% | |
| GAGTAGCGCTATTTAGTTAG+TGG | + | chr4_3:57250919-57250938 | None:intergenic | 40.0% | |
| GCCGATCAAACTAAATAGCT+AGG | + | chr4_3:57251022-57251041 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | - | chr4_3:57251027-57251046 | Msa0650370:intron | 40.0% |
| !! | TCCTTTTCAGCTTGCTTTGA+GGG | + | chr4_3:57251196-57251215 | None:intergenic | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | - | chr4_3:57251277-57251296 | Msa0650370:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | + | chr4_3:57251282-57251301 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | + | chr4_3:57251314-57251333 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | - | chr4_3:57251321-57251340 | Msa0650370:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | - | chr4_3:57251391-57251410 | Msa0650370:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | - | chr4_3:57251647-57251666 | Msa0650370:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+AGG | + | chr4_3:57251795-57251814 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | + | chr4_3:57251810-57251829 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | - | chr4_3:57251822-57251841 | Msa0650370:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | - | chr4_3:57251823-57251842 | Msa0650370:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | + | chr4_3:57252165-57252184 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | + | chr4_3:57252225-57252244 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | + | chr4_3:57252287-57252306 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | - | chr4_3:57252304-57252323 | Msa0650370:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | + | chr4_3:57252769-57252788 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | + | chr4_3:57252805-57252824 | None:intergenic | 40.0% |
| ! | ATGGTTTGGCATCGGATTTG+GGG | + | chr4_3:57249842-57249861 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | + | chr4_3:57249843-57249862 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | + | chr4_3:57249844-57249863 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | + | chr4_3:57249850-57249869 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | + | chr4_3:57249861-57249880 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | + | chr4_3:57249919-57249938 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | - | chr4_3:57249957-57249976 | Msa0650370:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | + | chr4_3:57249962-57249981 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | - | chr4_3:57249983-57250002 | Msa0650370:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | - | chr4_3:57250043-57250062 | Msa0650370:CDS | 45.0% |
| !! | AGGGGCTTCTTGTTGATTCT+CGG | + | chr4_3:57250204-57250223 | None:intergenic | 45.0% |
| GGCCAAACCAAACAAGTACT+AGG | + | chr4_3:57250604-57250623 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_3:57250946-57250965 | Msa0650370:intron | 45.0% |
| !! | TTACCGTTGACTCCAACTCA+CGG | + | chr4_3:57251165-57251184 | None:intergenic | 45.0% |
| !! | CTCCTTTTCAGCTTGCTTTG+AGG | + | chr4_3:57251197-57251216 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | - | chr4_3:57251234-57251253 | Msa0650370:intron | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | - | chr4_3:57251271-57251290 | Msa0650370:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | - | chr4_3:57251303-57251322 | Msa0650370:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | - | chr4_3:57251327-57251346 | Msa0650370:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | + | chr4_3:57251392-57251411 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | - | chr4_3:57251390-57251409 | Msa0650370:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | + | chr4_3:57251419-57251438 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | - | chr4_3:57251633-57251652 | Msa0650370:intron | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | + | chr4_3:57252416-57252435 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | + | chr4_3:57252447-57252466 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | + | chr4_3:57252448-57252467 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | - | chr4_3:57252564-57252583 | Msa0650370:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | - | chr4_3:57252629-57252648 | Msa0650370:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | + | chr4_3:57252766-57252785 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | - | chr4_3:57252981-57253000 | Msa0650370:five_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | + | chr4_3:57250258-57250277 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | + | chr4_3:57250259-57250278 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | + | chr4_3:57251517-57251536 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | + | chr4_3:57249825-57249844 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | + | chr4_3:57249830-57249849 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | + | chr4_3:57249831-57249850 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | + | chr4_3:57249856-57249875 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCAC+CGG | - | chr4_3:57249869-57249888 | Msa0650370:three_prime_UTR | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | - | chr4_3:57249921-57249940 | Msa0650370:exon | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | - | chr4_3:57249982-57250001 | Msa0650370:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | + | chr4_3:57250119-57250138 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | + | chr4_3:57250120-57250139 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | + | chr4_3:57250198-57250217 | None:intergenic | 50.0% |
| !! | GGCTTCTTGTTGATTCTCGG+CGG | + | chr4_3:57250201-57250220 | None:intergenic | 50.0% |
| !! | ATGGATTGGGACGAGACACT+GGG | - | chr4_3:57251080-57251099 | Msa0650370:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | - | chr4_3:57251159-57251178 | Msa0650370:intron | 50.0% |
| GCCCTCAAAGCAAGCTGAAA+AGG | - | chr4_3:57251192-57251211 | Msa0650370:intron | 50.0% | |
| TGAAAAGGAGCAACCAGCTC+CGG | - | chr4_3:57251207-57251226 | Msa0650370:intron | 50.0% | |
| GAAGGCCGAAAACAAAGAGG+AGG | - | chr4_3:57251237-57251256 | Msa0650370:intron | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | - | chr4_3:57251241-57251260 | Msa0650370:intron | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | + | chr4_3:57251245-57251264 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | - | chr4_3:57251242-57251261 | Msa0650370:intron | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | - | chr4_3:57251243-57251262 | Msa0650370:intron | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | - | chr4_3:57251302-57251321 | Msa0650370:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | - | chr4_3:57251339-57251358 | Msa0650370:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | - | chr4_3:57251362-57251381 | Msa0650370:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | + | chr4_3:57251439-57251458 | None:intergenic | 50.0% |
| !! | TCTCTTGGTAACGAGCAGTG+AGG | - | chr4_3:57252081-57252100 | Msa0650370:intron | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | + | chr4_3:57252211-57252230 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | + | chr4_3:57252217-57252236 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | + | chr4_3:57252449-57252468 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | - | chr4_3:57252494-57252513 | Msa0650370:intron | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | + | chr4_3:57252525-57252544 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | - | chr4_3:57252561-57252580 | Msa0650370:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | - | chr4_3:57252567-57252586 | Msa0650370:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | - | chr4_3:57252593-57252612 | Msa0650370:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | - | chr4_3:57252611-57252630 | Msa0650370:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | - | chr4_3:57252653-57252672 | Msa0650370:CDS | 50.0% |
| GAGGATGGGTCCGTAGTAAT+CGG | + | chr4_3:57252715-57252734 | None:intergenic | 50.0% | |
| TTACTACGGACCCATCCTCA+TGG | - | chr4_3:57252716-57252735 | Msa0650370:CDS | 50.0% | |
| TGCTTCTCAGCCATGAGGAT+GGG | + | chr4_3:57252729-57252748 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | + | chr4_3:57252734-57252753 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGATTGGGAAG+AGG | + | chr4_3:57249870-57249889 | None:intergenic | 55.0% |
| ! | GACTCCGGTGGTGGTTGATT+GGG | + | chr4_3:57249876-57249895 | None:intergenic | 55.0% |
| ! | AGACTCCGGTGGTGGTTGAT+TGG | + | chr4_3:57249877-57249896 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | + | chr4_3:57249891-57249910 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | + | chr4_3:57249916-57249935 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | - | chr4_3:57250130-57250149 | Msa0650370:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | + | chr4_3:57250195-57250214 | None:intergenic | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_3:57250944-57250963 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_3:57250941-57250960 | Msa0650370:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | - | chr4_3:57251079-57251098 | Msa0650370:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | + | chr4_3:57251156-57251175 | None:intergenic | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | + | chr4_3:57251229-57251248 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | - | chr4_3:57251240-57251259 | Msa0650370:intron | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | - | chr4_3:57251250-57251269 | Msa0650370:intron | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | - | chr4_3:57251294-57251313 | Msa0650370:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | - | chr4_3:57251361-57251380 | Msa0650370:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | - | chr4_3:57251363-57251382 | Msa0650370:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | + | chr4_3:57251440-57251459 | None:intergenic | 55.0% | |
| TTGCTCTTCGACGCGCTTCT+CGG | + | chr4_3:57251452-57251471 | None:intergenic | 55.0% | |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | - | chr4_3:57252410-57252429 | Msa0650370:intron | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | - | chr4_3:57252497-57252516 | Msa0650370:intron | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | - | chr4_3:57252521-57252540 | Msa0650370:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | - | chr4_3:57252524-57252543 | Msa0650370:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | - | chr4_3:57252531-57252550 | Msa0650370:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | - | chr4_3:57252540-57252559 | Msa0650370:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | - | chr4_3:57252541-57252560 | Msa0650370:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | - | chr4_3:57252592-57252611 | Msa0650370:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | + | chr4_3:57252604-57252623 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | - | chr4_3:57252605-57252624 | Msa0650370:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | + | chr4_3:57252730-57252749 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | - | chr4_3:57252755-57252774 | Msa0650370:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | + | chr4_3:57249822-57249841 | None:intergenic | 60.0% |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | + | chr4_3:57249901-57249920 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | - | chr4_3:57251150-57251169 | Msa0650370:intron | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | - | chr4_3:57251210-57251229 | Msa0650370:intron | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | - | chr4_3:57251251-57251270 | Msa0650370:intron | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | + | chr4_3:57251366-57251385 | None:intergenic | 60.0% |
| GCCTCCACAGCTGCTTGATC+AGG | + | chr4_3:57252501-57252520 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | - | chr4_3:57252513-57252532 | Msa0650370:intron | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+TGG | + | chr4_3:57249888-57249907 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | + | chr4_3:57249900-57249919 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | - | chr4_3:57249900-57249919 | Msa0650370:three_prime_UTR | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | + | chr4_3:57249913-57249932 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | + | chr4_3:57250192-57250211 | None:intergenic | 65.0% |
| ACCAGCTCCGGAGGCTACGA+AGG | - | chr4_3:57251219-57251238 | Msa0650370:intron | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | - | chr4_3:57252401-57252420 | Msa0650370:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | - | chr4_3:57249812-57249831 | Msa0650370:three_prime_UTR | 70.0% | |
| GGTTCGGGAGACTCCGGTGG+TGG | + | chr4_3:57249885-57249904 | None:intergenic | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | + | chr4_3:57249906-57249925 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | - | chr4_3:57249905-57249924 | Msa0650370:three_prime_UTR | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | + | chr4_3:57251223-57251242 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57249744 | 57253004 | 57249744 | ID=Msa0650370;Name=Msa0650370 |
| chr4_3 | mRNA | 57249744 | 57253004 | 57249744 | ID=Msa0650370-mRNA-1;Parent=Msa0650370;Name=Msa0650370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|388 |
| chr4_3 | exon | 57249744 | 57250338 | 57249744 | ID=Msa0650370-mRNA-1:exon:15038;Parent=Msa0650370-mRNA-1 |
| chr4_3 | exon | 57251254 | 57251589 | 57251254 | ID=Msa0650370-mRNA-1:exon:15037;Parent=Msa0650370-mRNA-1 |
| chr4_3 | exon | 57252514 | 57253004 | 57252514 | ID=Msa0650370-mRNA-1:exon:15036;Parent=Msa0650370-mRNA-1 |
| chr4_3 | five_prime_UTR | 57252939 | 57253004 | 57252939 | ID=Msa0650370-mRNA-1:five_prime_utr;Parent=Msa0650370-mRNA-1 |
| chr4_3 | CDS | 57252514 | 57252938 | 57252514 | ID=Msa0650370-mRNA-1:cds;Parent=Msa0650370-mRNA-1 |
| chr4_3 | CDS | 57251254 | 57251589 | 57251254 | ID=Msa0650370-mRNA-1:cds;Parent=Msa0650370-mRNA-1 |
| chr4_3 | CDS | 57249933 | 57250338 | 57249933 | ID=Msa0650370-mRNA-1:cds;Parent=Msa0650370-mRNA-1 |
| chr4_3 | three_prime_UTR | 57249744 | 57249932 | 57249744 | ID=Msa0650370-mRNA-1:three_prime_utr;Parent=Msa0650370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
