Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456160 | XP_013456758.1 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456160 | A0A072ULX9 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa1456160 | 0.815936 | 7.158542e-52 | -8.615850e-47 |
| Msa1456160 | Msa1465700 | 0.804388 | 2.212135e-49 | -8.615850e-47 |
| Msa0610000 | Msa1456160 | 0.877889 | 4.374531e-69 | -8.615850e-47 |
| Msa0648620 | Msa1456160 | 0.819831 | 9.447941e-53 | -8.615850e-47 |
| Msa0648670 | Msa1456160 | 0.835930 | 1.259318e-56 | -8.615850e-47 |
| Msa0650370 | Msa1456160 | 0.980006 | 3.113804e-149 | -8.615850e-47 |
| Msa1235950 | Msa1456160 | 0.812027 | 5.211821e-51 | -8.615850e-47 |
| Msa1235980 | Msa1456160 | 0.811983 | 5.328388e-51 | -8.615850e-47 |
| Msa1257450 | Msa1456160 | 0.826145 | 3.185006e-54 | -8.615850e-47 |
| Msa1305260 | Msa1456160 | 0.803206 | 3.894113e-49 | -8.615850e-47 |
| Msa1037080 | Msa1456160 | 0.800299 | 1.538268e-48 | -8.615850e-47 |
| Msa1116940 | Msa1456160 | 0.850927 | 1.237143e-60 | -8.615850e-47 |
| Msa1136880 | Msa1456160 | 0.826493 | 2.631808e-54 | -8.615850e-47 |
| Msa0528750 | Msa1456160 | 0.979437 | 5.763119e-148 | -8.615850e-47 |
| Msa0528820 | Msa1456160 | 0.990064 | 6.797052e-181 | -8.615850e-47 |
| Msa0943180 | Msa1456160 | 0.821426 | 4.062491e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456160 | MtrunA17_Chr4g0042691 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456160 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.32e-27 | 107 |
| Msa1456160 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 304 | 362 | 82 | 140 | 3.82e-26 | 103 |
| Msa1456160 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 148 | 237 | 51 | 140 | 1.19e-18 | 83.2 |
| Msa1456160 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 9.10e-18 | 80.5 |
| Msa1456160 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 306 | 379 | 80 | 152 | 2.65e-14 | 70.5 |
| Msa1456160 | AT5G02210.1 | 40.000 | 75 | 42 | 1 | 175 | 246 | 74 | 148 | 4.94e-11 | 61.2 |
| Msa1456160 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.67e-14 | 69.7 |
| Msa1456160 | AT5G57640.1 | 38.129 | 139 | 62 | 5 | 245 | 365 | 13 | 145 | 5.37e-14 | 71.2 |
| Msa1456160 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 1.86e-13 | 69.7 |
Find 131 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | tig0036981:-14141 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | tig0036981:+14343 | Msa1456160:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | tig0036981:+15628 | Msa1456160:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | tig0036981:-17040 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | tig0036981:-14079 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | tig0036981:-14078 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | tig0036981:-16760 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | tig0036981:+15509 | Msa1456160:CDS |
| TTTAAATAGGTGTTATGAAT+TGG | 0.263964 | tig0036981:-17176 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | tig0036981:-14135 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | tig0036981:-14136 | None:intergenic |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | tig0036981:+16648 | Msa1456160:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | tig0036981:-15674 | None:intergenic |
| GACTCCGGTGGTGGTTGATT+GGG | 0.354635 | tig0036981:-14111 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | tig0036981:-15675 | None:intergenic |
| TTGCTCTTCGACGCGCTTCT+CGG | 0.361977 | tig0036981:-15687 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | tig0036981:+14404 | Msa1456160:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | tig0036981:-14154 | None:intergenic |
| AGGGGCTTCTTGTTGATTCT+CGG | 0.366247 | tig0036981:-14439 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | tig0036981:-16736 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | tig0036981:-15660 | None:intergenic |
| AGACTCCGGTGGTGGTTGAT+TGG | 0.385111 | tig0036981:-14112 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | tig0036981:+14383 | Msa1456160:CDS |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | tig0036981:+17035 | Msa1456160:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | tig0036981:-14197 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | tig0036981:-14355 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | tig0036981:+15540 | Msa1456160:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | tig0036981:-14148 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | tig0036981:-15517 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | tig0036981:+15600 | Msa1456160:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | tig0036981:+14220 | Msa1456160:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | tig0036981:+15599 | Msa1456160:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | tig0036981:-14091 | None:intergenic |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | tig0036981:-15458 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | tig0036981:+15541 | Msa1456160:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | tig0036981:+16831 | Msa1456160:CDS |
| GAGGATGGGTCCGTAGTAAT+CGG | 0.451688 | tig0036981:-16950 | None:intergenic |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | tig0036981:-14354 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | tig0036981:+14221 | Msa1456160:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | tig0036981:+14344 | Msa1456160:CDS |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | tig0036981:-14427 | None:intergenic |
| TAGGTGTTATGAATTGGAAT+AGG | 0.458703 | tig0036981:-17170 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | tig0036981:+16830 | Msa1456160:CDS |
| GCCCTCAAAGCAAGCTGAAA+AGG | 0.468090 | tig0036981:+15430 | Msa1456160:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | tig0036981:-15654 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | tig0036981:+14308 | Msa1456160:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | tig0036981:+15629 | Msa1456160:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | tig0036981:+15478 | Msa1456160:CDS |
| TGAAAAGGAGCAACCAGCTC+CGG | 0.488322 | tig0036981:+15445 | Msa1456160:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | tig0036981:+14320 | Msa1456160:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | tig0036981:+16769 | Msa1456160:CDS |
| GGTTCGGGAGACTCCGGTGG+TGG | 0.501484 | tig0036981:-14120 | None:intergenic |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | tig0036981:+16993 | Msa1456160:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | tig0036981:-15713 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | tig0036981:+16735 | Msa1456160:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | tig0036981:-16964 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | tig0036981:+17213 | Msa1456160:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | tig0036981:+14398 | Msa1456160:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.516638 | tig0036981:-14126 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | tig0036981:-17062 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | tig0036981:+14143 | Msa1456160:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | tig0036981:+14138 | Msa1456160:CDS |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | tig0036981:+17219 | Msa1456160:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | tig0036981:+15480 | Msa1456160:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | tig0036981:+15515 | Msa1456160:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | tig0036981:-15712 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.533119 | tig0036981:-14433 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | tig0036981:+16762 | Msa1456160:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | tig0036981:+16891 | Msa1456160:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | tig0036981:-16917 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | tig0036981:+14159 | Msa1456160:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | tig0036981:+16732 | Msa1456160:CDS |
| ATAAAGTAAGGAACAAGGCA+AGG | 0.545331 | tig0036981:+13969 | None:intergenic |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | tig0036981:+16849 | Msa1456160:CDS |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | tig0036981:-17001 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | tig0036981:+15479 | Msa1456160:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | tig0036981:+15457 | Msa1456160:CDS |
| GTGTTATGAATTGGAATAGG+TGG | 0.553552 | tig0036981:-17167 | None:intergenic |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | tig0036981:-14085 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | tig0036981:+14195 | Msa1456160:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | tig0036981:+16779 | Msa1456160:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | tig0036981:-17063 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | tig0036981:-16965 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | tig0036981:-14096 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | tig0036981:+15481 | Msa1456160:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | tig0036981:+15565 | Msa1456160:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | tig0036981:+14368 | Msa1456160:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.570486 | tig0036981:-14430 | None:intergenic |
| GGTGGTGGTTGATTGGGAAG+AGG | 0.571966 | tig0036981:-14105 | None:intergenic |
| GATTCTCATTCCGATTACTA+CGG | 0.572132 | tig0036981:+16940 | Msa1456160:CDS |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | tig0036981:+16751 | Msa1456160:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | tig0036981:+16805 | Msa1456160:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | tig0036981:+16799 | Msa1456160:CDS |
| TCTGGTTCGGGAGACTCCGG+TGG | 0.575115 | tig0036981:-14123 | None:intergenic |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | tig0036981:+16778 | Msa1456160:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | tig0036981:+15577 | Msa1456160:CDS |
| TCTTCCCAATCAACCACCAC+CGG | 0.583567 | tig0036981:+14107 | Msa1456160:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | tig0036981:+15532 | Msa1456160:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | tig0036981:+16639 | Msa1456160:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | tig0036981:+15388 | Msa1456160:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | tig0036981:-14151 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | tig0036981:+15397 | Msa1456160:CDS |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | tig0036981:+16843 | Msa1456160:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | tig0036981:+14168 | Msa1456160:CDS |
| TTACTACGGACCCATCCTCA+TGG | 0.605217 | tig0036981:+16954 | Msa1456160:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | tig0036981:+15559 | Msa1456160:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | tig0036981:+16759 | Msa1456160:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | tig0036981:+14050 | Msa1456160:CDS |
| GGCTTCTTGTTGATTCTCGG+CGG | 0.626976 | tig0036981:-14436 | None:intergenic |
| TAAAGTAAGGAACAAGGCAA+GGG | 0.628276 | tig0036981:+13970 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | tig0036981:-14077 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | tig0036981:+14189 | Msa1456160:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.632779 | tig0036981:-15711 | None:intergenic |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | tig0036981:+14192 | Msa1456160:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.645801 | tig0036981:+15448 | Msa1456160:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | tig0036981:+14347 | Msa1456160:CDS |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | tig0036981:-17061 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | tig0036981:-16969 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | tig0036981:+16802 | Msa1456160:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | tig0036981:+15475 | Msa1456160:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | tig0036981:+15472 | Msa1456160:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | tig0036981:+17214 | Msa1456160:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | tig0036981:-17146 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | tig0036981:-15400 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | tig0036981:-16839 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | tig0036981:-16651 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | tig0036981:+16867 | Msa1456160:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | tig0036981:-15627 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | tig0036981:-15549 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | tig0036981:+14281 | Msa1456160:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | tig0036981:+15601 | Msa1456160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAATTGATAAAATT+AGG | + | tig0036981:14563-14582 | Msa1456160:intron | 10.0% |
| !!! | TTGTTTTTTAATTTTTGATA+TGG | + | tig0036981:14712-14731 | Msa1456160:intron | 10.0% |
| !! | ATATAAAATAAAAATAGGAA+TGG | - | tig0036981:15750-15769 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | + | tig0036981:16618-16637 | Msa1456160:intron | 10.0% |
| !!! | TTTTATCAATTGAAATATGT+GGG | - | tig0036981:14561-14580 | None:intergenic | 15.0% |
| !!! | ATTTTATCAATTGAAATATG+TGG | - | tig0036981:14562-14581 | None:intergenic | 15.0% |
| !!! | TTCTATTTAATTTGTTGATT+TGG | + | tig0036981:14989-15008 | Msa1456160:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | + | tig0036981:14990-15009 | Msa1456160:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | + | tig0036981:15961-15980 | Msa1456160:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | - | tig0036981:14461-14480 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | - | tig0036981:14462-14481 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | + | tig0036981:14662-14681 | Msa1456160:intron | 20.0% |
| !! | TAATAAGTGGAATTACTAAT+AGG | + | tig0036981:15911-15930 | Msa1456160:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | - | tig0036981:17099-17118 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+TGG | - | tig0036981:17179-17198 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | - | tig0036981:17192-17211 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | + | tig0036981:14343-14362 | Msa1456160:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | + | tig0036981:14344-14363 | Msa1456160:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | - | tig0036981:14460-14479 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | + | tig0036981:14646-14665 | Msa1456160:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | + | tig0036981:14726-14745 | Msa1456160:intron | 25.0% |
| ! | TTTGAGAATCGTTAATAATG+AGG | + | tig0036981:14878-14897 | Msa1456160:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | + | tig0036981:14904-14923 | Msa1456160:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | + | tig0036981:14905-14924 | Msa1456160:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | + | tig0036981:15073-15092 | Msa1456160:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | + | tig0036981:15074-15093 | Msa1456160:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | + | tig0036981:15114-15133 | Msa1456160:intron | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | - | tig0036981:15715-15734 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | + | tig0036981:16101-16120 | Msa1456160:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | + | tig0036981:16102-16121 | Msa1456160:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | + | tig0036981:16103-16122 | Msa1456160:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | - | tig0036981:16273-16292 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | + | tig0036981:16278-16297 | Msa1456160:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | + | tig0036981:16360-16379 | Msa1456160:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | - | tig0036981:16494-16513 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | - | tig0036981:14397-14416 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | - | tig0036981:14796-14815 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | + | tig0036981:14814-14833 | Msa1456160:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | - | tig0036981:14863-14882 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | + | tig0036981:14926-14945 | Msa1456160:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | + | tig0036981:15053-15072 | Msa1456160:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | - | tig0036981:15714-15733 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | - | tig0036981:15716-15735 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | - | tig0036981:15819-15838 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | + | tig0036981:15898-15917 | Msa1456160:intron | 30.0% |
| !! | TTGTTGATGATTTATGCCTT+AGG | + | tig0036981:16014-16033 | Msa1456160:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | + | tig0036981:16129-16148 | Msa1456160:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | + | tig0036981:16186-16205 | Msa1456160:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | - | tig0036981:16348-16367 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | - | tig0036981:16410-16429 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | + | tig0036981:16496-16515 | Msa1456160:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | - | tig0036981:16920-16939 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | + | tig0036981:17035-17054 | Msa1456160:exon | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | - | tig0036981:17065-17084 | None:intergenic | 30.0% | |
| ! | TAGGTGTTATGAATTGGAAT+AGG | - | tig0036981:17173-17192 | None:intergenic | 30.0% |
| TAACTTTGTATGAGAGAAAG+AGG | + | tig0036981:17213-17232 | Msa1456160:three_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | + | tig0036981:17214-17233 | Msa1456160:three_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | + | tig0036981:14308-14327 | Msa1456160:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | + | tig0036981:14398-14417 | Msa1456160:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | - | tig0036981:14822-14841 | None:intergenic | 35.0% | |
| TATGGTACCTAGTACTTGTT+TGG | + | tig0036981:14832-14851 | Msa1456160:intron | 35.0% | |
| TACCTAGTACTTGTTTGGTT+TGG | + | tig0036981:14837-14856 | Msa1456160:intron | 35.0% | |
| !! | TCTGTGTGTTTGACTTCTTT+TGG | + | tig0036981:14960-14979 | Msa1456160:intron | 35.0% |
| !! | CTGTGTGTTTGACTTCTTTT+GGG | + | tig0036981:14961-14980 | Msa1456160:intron | 35.0% |
| AGTAGCGCTATTTAGTTAGT+GGG | - | tig0036981:15156-15175 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | + | tig0036981:15256-15275 | Msa1456160:intron | 35.0% |
| CAGTTACTCAGATATAGTGA+TGG | + | tig0036981:15299-15318 | Msa1456160:intron | 35.0% | |
| !! | ACTCAGATATAGTGATGGAT+TGG | + | tig0036981:15304-15323 | Msa1456160:intron | 35.0% |
| !! | CTCAGATATAGTGATGGATT+GGG | + | tig0036981:15305-15324 | Msa1456160:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | - | tig0036981:15663-15682 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | + | tig0036981:15978-15997 | Msa1456160:intron | 35.0% | |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | + | tig0036981:16304-16323 | Msa1456160:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | - | tig0036981:16402-16421 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | - | tig0036981:16406-16425 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | - | tig0036981:16500-16519 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | + | tig0036981:16565-16584 | Msa1456160:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | + | tig0036981:16566-16585 | Msa1456160:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | - | tig0036981:16719-16738 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | + | tig0036981:16918-16937 | Msa1456160:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+CGG | + | tig0036981:16940-16959 | Msa1456160:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | - | tig0036981:17064-17083 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | - | tig0036981:17066-17085 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | - | tig0036981:17149-17168 | None:intergenic | 35.0% | |
| GTGTTATGAATTGGAATAGG+TGG | - | tig0036981:17170-17189 | None:intergenic | 35.0% | |
| GATGAAGAAGAAGGAGAATG+CGG | + | tig0036981:14168-14187 | Msa1456160:CDS | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | + | tig0036981:14189-14208 | Msa1456160:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | + | tig0036981:14192-14211 | Msa1456160:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | + | tig0036981:14320-14339 | Msa1456160:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | + | tig0036981:14347-14366 | Msa1456160:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | + | tig0036981:14383-14402 | Msa1456160:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | + | tig0036981:14404-14423 | Msa1456160:CDS | 40.0% | |
| ACTGTGTATCAGTGTATGAG+AGG | + | tig0036981:14613-14632 | Msa1456160:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | + | tig0036981:14619-14638 | Msa1456160:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | + | tig0036981:14620-14639 | Msa1456160:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | - | tig0036981:14781-14800 | None:intergenic | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | - | tig0036981:15036-15055 | None:intergenic | 40.0% | |
| GAGTAGCGCTATTTAGTTAG+TGG | - | tig0036981:15157-15176 | None:intergenic | 40.0% | |
| GCCGATCAAACTAAATAGCT+AGG | - | tig0036981:15260-15279 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | + | tig0036981:15265-15284 | Msa1456160:intron | 40.0% |
| !! | TCCTTTTCAGCTTGCTTTGA+GGG | - | tig0036981:15434-15453 | None:intergenic | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | + | tig0036981:15515-15534 | Msa1456160:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | - | tig0036981:15520-15539 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | - | tig0036981:15552-15571 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | + | tig0036981:15559-15578 | Msa1456160:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | + | tig0036981:15629-15648 | Msa1456160:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | + | tig0036981:15885-15904 | Msa1456160:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+AGG | - | tig0036981:16033-16052 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | - | tig0036981:16048-16067 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | + | tig0036981:16060-16079 | Msa1456160:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | + | tig0036981:16061-16080 | Msa1456160:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | - | tig0036981:16403-16422 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | - | tig0036981:16463-16482 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | - | tig0036981:16525-16544 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | + | tig0036981:16542-16561 | Msa1456160:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | - | tig0036981:17007-17026 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | - | tig0036981:17043-17062 | None:intergenic | 40.0% |
| ! | ATGGTTTGGCATCGGATTTG+GGG | - | tig0036981:14080-14099 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | - | tig0036981:14081-14100 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | - | tig0036981:14082-14101 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | - | tig0036981:14088-14107 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | - | tig0036981:14099-14118 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | - | tig0036981:14157-14176 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | + | tig0036981:14195-14214 | Msa1456160:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | - | tig0036981:14200-14219 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | + | tig0036981:14221-14240 | Msa1456160:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | + | tig0036981:14281-14300 | Msa1456160:CDS | 45.0% |
| !! | AGGGGCTTCTTGTTGATTCT+CGG | - | tig0036981:14442-14461 | None:intergenic | 45.0% |
| GGCCAAACCAAACAAGTACT+AGG | - | tig0036981:14842-14861 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | tig0036981:15184-15203 | Msa1456160:intron | 45.0% |
| !! | TTACCGTTGACTCCAACTCA+CGG | - | tig0036981:15403-15422 | None:intergenic | 45.0% |
| !! | CTCCTTTTCAGCTTGCTTTG+AGG | - | tig0036981:15435-15454 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | + | tig0036981:15472-15491 | Msa1456160:CDS | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | + | tig0036981:15509-15528 | Msa1456160:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | + | tig0036981:15541-15560 | Msa1456160:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | + | tig0036981:15565-15584 | Msa1456160:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | - | tig0036981:15630-15649 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | + | tig0036981:15628-15647 | Msa1456160:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | - | tig0036981:15657-15676 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | + | tig0036981:15871-15890 | Msa1456160:intron | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | - | tig0036981:16654-16673 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | - | tig0036981:16685-16704 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | - | tig0036981:16686-16705 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | + | tig0036981:16802-16821 | Msa1456160:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | + | tig0036981:16867-16886 | Msa1456160:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | - | tig0036981:17004-17023 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | + | tig0036981:17219-17238 | Msa1456160:three_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | - | tig0036981:14496-14515 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | - | tig0036981:14497-14516 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | - | tig0036981:15755-15774 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | - | tig0036981:14063-14082 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | - | tig0036981:14068-14087 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | - | tig0036981:14069-14088 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | - | tig0036981:14094-14113 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCAC+CGG | + | tig0036981:14107-14126 | Msa1456160:CDS | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | + | tig0036981:14159-14178 | Msa1456160:CDS | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | + | tig0036981:14220-14239 | Msa1456160:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | - | tig0036981:14357-14376 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | - | tig0036981:14358-14377 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | - | tig0036981:14436-14455 | None:intergenic | 50.0% |
| !! | GGCTTCTTGTTGATTCTCGG+CGG | - | tig0036981:14439-14458 | None:intergenic | 50.0% |
| !! | ATGGATTGGGACGAGACACT+GGG | + | tig0036981:15318-15337 | Msa1456160:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | + | tig0036981:15397-15416 | Msa1456160:CDS | 50.0% |
| GCCCTCAAAGCAAGCTGAAA+AGG | + | tig0036981:15430-15449 | Msa1456160:CDS | 50.0% | |
| TGAAAAGGAGCAACCAGCTC+CGG | + | tig0036981:15445-15464 | Msa1456160:CDS | 50.0% | |
| GAAGGCCGAAAACAAAGAGG+AGG | + | tig0036981:15475-15494 | Msa1456160:CDS | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | + | tig0036981:15479-15498 | Msa1456160:CDS | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | - | tig0036981:15483-15502 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | + | tig0036981:15480-15499 | Msa1456160:CDS | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | + | tig0036981:15481-15500 | Msa1456160:CDS | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | + | tig0036981:15540-15559 | Msa1456160:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | + | tig0036981:15577-15596 | Msa1456160:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | + | tig0036981:15600-15619 | Msa1456160:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | - | tig0036981:15677-15696 | None:intergenic | 50.0% |
| !! | TCTCTTGGTAACGAGCAGTG+AGG | + | tig0036981:16319-16338 | Msa1456160:intron | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | - | tig0036981:16449-16468 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | - | tig0036981:16455-16474 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | - | tig0036981:16687-16706 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | + | tig0036981:16732-16751 | Msa1456160:CDS | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | - | tig0036981:16763-16782 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | + | tig0036981:16799-16818 | Msa1456160:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | + | tig0036981:16805-16824 | Msa1456160:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | + | tig0036981:16831-16850 | Msa1456160:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | + | tig0036981:16849-16868 | Msa1456160:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | + | tig0036981:16891-16910 | Msa1456160:CDS | 50.0% |
| GAGGATGGGTCCGTAGTAAT+CGG | - | tig0036981:16953-16972 | None:intergenic | 50.0% | |
| TTACTACGGACCCATCCTCA+TGG | + | tig0036981:16954-16973 | Msa1456160:CDS | 50.0% | |
| TGCTTCTCAGCCATGAGGAT+GGG | - | tig0036981:16967-16986 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | - | tig0036981:16972-16991 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGATTGGGAAG+AGG | - | tig0036981:14108-14127 | None:intergenic | 55.0% |
| ! | GACTCCGGTGGTGGTTGATT+GGG | - | tig0036981:14114-14133 | None:intergenic | 55.0% |
| ! | AGACTCCGGTGGTGGTTGAT+TGG | - | tig0036981:14115-14134 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | - | tig0036981:14129-14148 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | - | tig0036981:14154-14173 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | + | tig0036981:14368-14387 | Msa1456160:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | - | tig0036981:14433-14452 | None:intergenic | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | tig0036981:15182-15201 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | tig0036981:15179-15198 | Msa1456160:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | + | tig0036981:15317-15336 | Msa1456160:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | - | tig0036981:15394-15413 | None:intergenic | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | - | tig0036981:15467-15486 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | + | tig0036981:15478-15497 | Msa1456160:CDS | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | + | tig0036981:15488-15507 | Msa1456160:CDS | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | + | tig0036981:15532-15551 | Msa1456160:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | + | tig0036981:15599-15618 | Msa1456160:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | + | tig0036981:15601-15620 | Msa1456160:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | - | tig0036981:15678-15697 | None:intergenic | 55.0% | |
| TTGCTCTTCGACGCGCTTCT+CGG | - | tig0036981:15690-15709 | None:intergenic | 55.0% | |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | + | tig0036981:16648-16667 | Msa1456160:CDS | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | + | tig0036981:16735-16754 | Msa1456160:CDS | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | + | tig0036981:16759-16778 | Msa1456160:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | + | tig0036981:16762-16781 | Msa1456160:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | + | tig0036981:16769-16788 | Msa1456160:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | + | tig0036981:16778-16797 | Msa1456160:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | + | tig0036981:16779-16798 | Msa1456160:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | + | tig0036981:16830-16849 | Msa1456160:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | - | tig0036981:16842-16861 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | + | tig0036981:16843-16862 | Msa1456160:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | - | tig0036981:16968-16987 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | + | tig0036981:16993-17012 | Msa1456160:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | - | tig0036981:14060-14079 | None:intergenic | 60.0% |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | - | tig0036981:14139-14158 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | + | tig0036981:15388-15407 | Msa1456160:intron | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | + | tig0036981:15448-15467 | Msa1456160:CDS | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | + | tig0036981:15489-15508 | Msa1456160:CDS | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | - | tig0036981:15604-15623 | None:intergenic | 60.0% |
| GCCTCCACAGCTGCTTGATC+AGG | - | tig0036981:16739-16758 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | + | tig0036981:16751-16770 | Msa1456160:CDS | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+TGG | - | tig0036981:14126-14145 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | - | tig0036981:14138-14157 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | + | tig0036981:14138-14157 | Msa1456160:CDS | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | - | tig0036981:14151-14170 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | - | tig0036981:14430-14449 | None:intergenic | 65.0% |
| ACCAGCTCCGGAGGCTACGA+AGG | + | tig0036981:15457-15476 | Msa1456160:CDS | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | + | tig0036981:16639-16658 | Msa1456160:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | + | tig0036981:14050-14069 | Msa1456160:CDS | 70.0% | |
| GGTTCGGGAGACTCCGGTGG+TGG | - | tig0036981:14123-14142 | None:intergenic | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | - | tig0036981:14144-14163 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | + | tig0036981:14143-14162 | Msa1456160:CDS | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | - | tig0036981:15461-15480 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036981 | gene | 13982 | 17242 | 13982 | ID=Msa1456160;Name=Msa1456160 |
| tig0036981 | mRNA | 13982 | 17242 | 13982 | ID=Msa1456160-mRNA-1;Parent=Msa1456160;Name=Msa1456160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|388 |
| tig0036981 | exon | 13982 | 14472 | 13982 | ID=Msa1456160-mRNA-1:exon:20607;Parent=Msa1456160-mRNA-1 |
| tig0036981 | exon | 15397 | 15732 | 15397 | ID=Msa1456160-mRNA-1:exon:20608;Parent=Msa1456160-mRNA-1 |
| tig0036981 | exon | 16648 | 17242 | 16648 | ID=Msa1456160-mRNA-1:exon:20609;Parent=Msa1456160-mRNA-1 |
| tig0036981 | five_prime_UTR | 13982 | 14047 | 13982 | ID=Msa1456160-mRNA-1:five_prime_utr;Parent=Msa1456160-mRNA-1 |
| tig0036981 | CDS | 14048 | 14472 | 14048 | ID=Msa1456160-mRNA-1:cds;Parent=Msa1456160-mRNA-1 |
| tig0036981 | CDS | 15397 | 15732 | 15397 | ID=Msa1456160-mRNA-1:cds;Parent=Msa1456160-mRNA-1 |
| tig0036981 | CDS | 16648 | 17053 | 16648 | ID=Msa1456160-mRNA-1:cds;Parent=Msa1456160-mRNA-1 |
| tig0036981 | three_prime_UTR | 17054 | 17242 | 17054 | ID=Msa1456160-mRNA-1:three_prime_utr;Parent=Msa1456160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
