Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528750 | XP_013456758.1 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528750 | A0A072ULX9 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa0528750 | 0.817025 | 4.084901e-52 | -8.615850e-47 |
| Msa0309000 | Msa0528750 | 0.812081 | 5.072054e-51 | -8.615850e-47 |
| Msa0528750 | Msa0528820 | 0.973903 | 3.186976e-137 | -8.615850e-47 |
| Msa0528750 | Msa0610000 | 0.882240 | 1.229388e-70 | -8.615850e-47 |
| Msa0528750 | Msa0648620 | 0.801354 | 9.365957e-49 | -8.615850e-47 |
| Msa0528750 | Msa0648670 | 0.818821 | 1.605043e-52 | -8.615850e-47 |
| Msa0528750 | Msa0650370 | 0.996419 | 2.717859e-227 | -8.615850e-47 |
| Msa0528750 | Msa0943180 | 0.830792 | 2.405791e-55 | -8.615850e-47 |
| Msa0528750 | Msa1116940 | 0.843766 | 1.144780e-58 | -8.615850e-47 |
| Msa0528750 | Msa1136880 | 0.815385 | 9.499968e-52 | -8.615850e-47 |
| Msa0528750 | Msa1235950 | 0.800126 | 1.667772e-48 | -8.615850e-47 |
| Msa0528750 | Msa1235980 | 0.800159 | 1.642393e-48 | -8.615850e-47 |
| Msa0528750 | Msa1257450 | 0.833400 | 5.449549e-56 | -8.615850e-47 |
| Msa0528750 | Msa1305260 | 0.805095 | 1.574991e-49 | -8.615850e-47 |
| Msa0528750 | Msa1456160 | 0.979437 | 5.763119e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528750 | MtrunA17_Chr4g0042691 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528750 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.32e-27 | 107 |
| Msa0528750 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 304 | 362 | 82 | 140 | 3.82e-26 | 103 |
| Msa0528750 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 148 | 237 | 51 | 140 | 1.19e-18 | 83.2 |
| Msa0528750 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 9.10e-18 | 80.5 |
| Msa0528750 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 306 | 379 | 80 | 152 | 2.65e-14 | 70.5 |
| Msa0528750 | AT5G02210.1 | 40.000 | 75 | 42 | 1 | 175 | 246 | 74 | 148 | 4.94e-11 | 61.2 |
| Msa0528750 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.67e-14 | 69.7 |
| Msa0528750 | AT5G57640.1 | 38.129 | 139 | 62 | 5 | 245 | 365 | 13 | 145 | 5.37e-14 | 71.2 |
| Msa0528750 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 1.86e-13 | 69.7 |
Find 131 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | 4_1:+1680170 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | 4_1:-1679968 | Msa0528750:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | 4_1:-1678683 | Msa0528750:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | 4_1:+1677271 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | 4_1:+1680232 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | 4_1:+1680233 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | 4_1:+1677551 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | 4_1:-1678802 | Msa0528750:CDS |
| TTTAAATAGGTGTTATGAAT+TGG | 0.263964 | 4_1:+1677135 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | 4_1:+1680176 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | 4_1:+1680175 | None:intergenic |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | 4_1:-1677663 | Msa0528750:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | 4_1:+1678637 | None:intergenic |
| GACTCCGGTGGTGGTTGATT+GGG | 0.354635 | 4_1:+1680200 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | 4_1:+1678636 | None:intergenic |
| TTGCTCTTCGACGCGCTTCT+CGG | 0.361977 | 4_1:+1678624 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | 4_1:-1679907 | Msa0528750:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | 4_1:+1680157 | None:intergenic |
| AGGGGCTTCTTGTTGATTCT+CGG | 0.366247 | 4_1:+1679872 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | 4_1:+1677575 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | 4_1:+1678651 | None:intergenic |
| AGACTCCGGTGGTGGTTGAT+TGG | 0.385111 | 4_1:+1680199 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | 4_1:-1679928 | Msa0528750:CDS |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | 4_1:-1677276 | Msa0528750:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | 4_1:+1680114 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | 4_1:+1679956 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | 4_1:-1678771 | Msa0528750:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | 4_1:+1680163 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | 4_1:+1678794 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | 4_1:-1678711 | Msa0528750:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | 4_1:-1680091 | Msa0528750:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | 4_1:-1678712 | Msa0528750:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | 4_1:+1680220 | None:intergenic |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | 4_1:+1678853 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | 4_1:-1678770 | Msa0528750:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | 4_1:-1677480 | Msa0528750:CDS |
| GAGGATGGGTCCGTAGTAAT+CGG | 0.451688 | 4_1:+1677361 | None:intergenic |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | 4_1:+1679957 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | 4_1:-1680090 | Msa0528750:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | 4_1:-1679967 | Msa0528750:CDS |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | 4_1:+1679884 | None:intergenic |
| TAGGTGTTATGAATTGGAAT+AGG | 0.458703 | 4_1:+1677141 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | 4_1:-1677481 | Msa0528750:CDS |
| GCCCTCAAAGCAAGCTGAAA+AGG | 0.468090 | 4_1:-1678881 | Msa0528750:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | 4_1:+1678657 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | 4_1:-1680003 | Msa0528750:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | 4_1:-1678682 | Msa0528750:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | 4_1:-1678833 | Msa0528750:CDS |
| TGAAAAGGAGCAACCAGCTC+CGG | 0.488322 | 4_1:-1678866 | Msa0528750:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | 4_1:-1679991 | Msa0528750:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | 4_1:-1677542 | Msa0528750:CDS |
| GGTTCGGGAGACTCCGGTGG+TGG | 0.501484 | 4_1:+1680191 | None:intergenic |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | 4_1:-1677318 | Msa0528750:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | 4_1:+1678598 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | 4_1:-1677576 | Msa0528750:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | 4_1:+1677347 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | 4_1:-1677098 | Msa0528750:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | 4_1:-1679913 | Msa0528750:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.516638 | 4_1:+1680185 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | 4_1:+1677249 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | 4_1:-1680168 | Msa0528750:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | 4_1:-1680173 | Msa0528750:CDS |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | 4_1:-1677092 | Msa0528750:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | 4_1:-1678831 | Msa0528750:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | 4_1:-1678796 | Msa0528750:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | 4_1:+1678599 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.533119 | 4_1:+1679878 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | 4_1:-1677549 | Msa0528750:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | 4_1:-1677420 | Msa0528750:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | 4_1:+1677394 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | 4_1:-1680152 | Msa0528750:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | 4_1:-1677579 | Msa0528750:CDS |
| ATAAAGTAAGGAACAAGGCA+AGG | 0.545331 | 4_1:-1680342 | None:intergenic |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | 4_1:-1677462 | Msa0528750:CDS |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | 4_1:+1677310 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | 4_1:-1678832 | Msa0528750:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | 4_1:-1678854 | Msa0528750:CDS |
| GTGTTATGAATTGGAATAGG+TGG | 0.553552 | 4_1:+1677144 | None:intergenic |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | 4_1:+1680226 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | 4_1:-1680116 | Msa0528750:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | 4_1:-1677532 | Msa0528750:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | 4_1:+1677248 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | 4_1:+1677346 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | 4_1:+1680215 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | 4_1:-1678830 | Msa0528750:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | 4_1:-1678746 | Msa0528750:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | 4_1:-1679943 | Msa0528750:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.570486 | 4_1:+1679881 | None:intergenic |
| GGTGGTGGTTGATTGGGAAG+AGG | 0.571966 | 4_1:+1680206 | None:intergenic |
| GATTCTCATTCCGATTACTA+CGG | 0.572132 | 4_1:-1677371 | Msa0528750:CDS |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | 4_1:-1677560 | Msa0528750:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | 4_1:-1677506 | Msa0528750:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | 4_1:-1677512 | Msa0528750:CDS |
| TCTGGTTCGGGAGACTCCGG+TGG | 0.575115 | 4_1:+1680188 | None:intergenic |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | 4_1:-1677533 | Msa0528750:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | 4_1:-1678734 | Msa0528750:CDS |
| TCTTCCCAATCAACCACCAC+CGG | 0.583567 | 4_1:-1680204 | Msa0528750:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | 4_1:-1678779 | Msa0528750:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | 4_1:-1677672 | Msa0528750:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | 4_1:-1678923 | Msa0528750:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | 4_1:+1680160 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | 4_1:-1678914 | Msa0528750:CDS |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | 4_1:-1677468 | Msa0528750:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | 4_1:-1680143 | Msa0528750:CDS |
| TTACTACGGACCCATCCTCA+TGG | 0.605217 | 4_1:-1677357 | Msa0528750:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | 4_1:-1678752 | Msa0528750:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | 4_1:-1677552 | Msa0528750:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | 4_1:-1680261 | Msa0528750:CDS |
| GGCTTCTTGTTGATTCTCGG+CGG | 0.626976 | 4_1:+1679875 | None:intergenic |
| TAAAGTAAGGAACAAGGCAA+GGG | 0.628276 | 4_1:-1680341 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | 4_1:+1680234 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | 4_1:-1680122 | Msa0528750:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.632779 | 4_1:+1678600 | None:intergenic |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | 4_1:-1680119 | Msa0528750:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.645801 | 4_1:-1678863 | Msa0528750:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | 4_1:-1679964 | Msa0528750:CDS |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | 4_1:+1677250 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | 4_1:+1677342 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | 4_1:-1677509 | Msa0528750:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | 4_1:-1678836 | Msa0528750:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | 4_1:-1678839 | Msa0528750:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | 4_1:-1677097 | Msa0528750:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | 4_1:+1677165 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | 4_1:+1678911 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | 4_1:+1677472 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | 4_1:+1677660 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | 4_1:-1677444 | Msa0528750:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | 4_1:+1678684 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | 4_1:+1678762 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | 4_1:-1680030 | Msa0528750:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | 4_1:-1678710 | Msa0528750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAATTGATAAAATT+AGG | - | chr4_1:1677672-1677691 | Msa0528750:intron | 10.0% |
| !!! | TTGTTTTTTAATTTTTGATA+TGG | - | chr4_1:1677821-1677840 | Msa0528750:intron | 10.0% |
| !! | ATATAAAATAAAAATAGGAA+TGG | + | chr4_1:1678859-1678878 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | - | chr4_1:1679727-1679746 | Msa0528750:intron | 10.0% |
| !!! | TTTTATCAATTGAAATATGT+GGG | + | chr4_1:1677670-1677689 | None:intergenic | 15.0% |
| !!! | ATTTTATCAATTGAAATATG+TGG | + | chr4_1:1677671-1677690 | None:intergenic | 15.0% |
| !!! | TTCTATTTAATTTGTTGATT+TGG | - | chr4_1:1678098-1678117 | Msa0528750:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | - | chr4_1:1678099-1678118 | Msa0528750:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | - | chr4_1:1679070-1679089 | Msa0528750:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | + | chr4_1:1677570-1677589 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | + | chr4_1:1677571-1677590 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | - | chr4_1:1677771-1677790 | Msa0528750:intron | 20.0% |
| !! | TAATAAGTGGAATTACTAAT+AGG | - | chr4_1:1679020-1679039 | Msa0528750:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | + | chr4_1:1680208-1680227 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+TGG | + | chr4_1:1680288-1680307 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | + | chr4_1:1680301-1680320 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | - | chr4_1:1677452-1677471 | Msa0528750:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | - | chr4_1:1677453-1677472 | Msa0528750:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | + | chr4_1:1677569-1677588 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | - | chr4_1:1677755-1677774 | Msa0528750:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | - | chr4_1:1677835-1677854 | Msa0528750:intron | 25.0% |
| ! | TTTGAGAATCGTTAATAATG+AGG | - | chr4_1:1677987-1678006 | Msa0528750:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | - | chr4_1:1678013-1678032 | Msa0528750:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | - | chr4_1:1678014-1678033 | Msa0528750:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | - | chr4_1:1678182-1678201 | Msa0528750:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | - | chr4_1:1678183-1678202 | Msa0528750:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | - | chr4_1:1678223-1678242 | Msa0528750:intron | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | + | chr4_1:1678824-1678843 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | - | chr4_1:1679210-1679229 | Msa0528750:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | - | chr4_1:1679211-1679230 | Msa0528750:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | - | chr4_1:1679212-1679231 | Msa0528750:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | + | chr4_1:1679382-1679401 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | - | chr4_1:1679387-1679406 | Msa0528750:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | - | chr4_1:1679469-1679488 | Msa0528750:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | + | chr4_1:1679603-1679622 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | + | chr4_1:1677506-1677525 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | + | chr4_1:1677905-1677924 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | - | chr4_1:1677923-1677942 | Msa0528750:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | + | chr4_1:1677972-1677991 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | - | chr4_1:1678035-1678054 | Msa0528750:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | - | chr4_1:1678162-1678181 | Msa0528750:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | + | chr4_1:1678823-1678842 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | + | chr4_1:1678825-1678844 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | + | chr4_1:1678928-1678947 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | - | chr4_1:1679007-1679026 | Msa0528750:intron | 30.0% |
| !! | TTGTTGATGATTTATGCCTT+AGG | - | chr4_1:1679123-1679142 | Msa0528750:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | - | chr4_1:1679238-1679257 | Msa0528750:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | - | chr4_1:1679295-1679314 | Msa0528750:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | + | chr4_1:1679457-1679476 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | + | chr4_1:1679519-1679538 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | - | chr4_1:1679605-1679624 | Msa0528750:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | + | chr4_1:1680029-1680048 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | - | chr4_1:1680144-1680163 | Msa0528750:CDS | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | + | chr4_1:1680174-1680193 | None:intergenic | 30.0% | |
| ! | TAGGTGTTATGAATTGGAAT+AGG | + | chr4_1:1680282-1680301 | None:intergenic | 30.0% |
| TAACTTTGTATGAGAGAAAG+AGG | - | chr4_1:1680322-1680341 | Msa0528750:five_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | - | chr4_1:1680323-1680342 | Msa0528750:five_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | - | chr4_1:1677417-1677436 | Msa0528750:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | - | chr4_1:1677507-1677526 | Msa0528750:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | + | chr4_1:1677931-1677950 | None:intergenic | 35.0% | |
| TATGGTACCTAGTACTTGTT+TGG | - | chr4_1:1677941-1677960 | Msa0528750:intron | 35.0% | |
| TACCTAGTACTTGTTTGGTT+TGG | - | chr4_1:1677946-1677965 | Msa0528750:intron | 35.0% | |
| !! | TCTGTGTGTTTGACTTCTTT+TGG | - | chr4_1:1678069-1678088 | Msa0528750:intron | 35.0% |
| !! | CTGTGTGTTTGACTTCTTTT+GGG | - | chr4_1:1678070-1678089 | Msa0528750:intron | 35.0% |
| AGTAGCGCTATTTAGTTAGT+GGG | + | chr4_1:1678265-1678284 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | - | chr4_1:1678365-1678384 | Msa0528750:intron | 35.0% |
| CAGTTACTCAGATATAGTGA+TGG | - | chr4_1:1678408-1678427 | Msa0528750:intron | 35.0% | |
| !! | ACTCAGATATAGTGATGGAT+TGG | - | chr4_1:1678413-1678432 | Msa0528750:intron | 35.0% |
| !! | CTCAGATATAGTGATGGATT+GGG | - | chr4_1:1678414-1678433 | Msa0528750:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | + | chr4_1:1678772-1678791 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | - | chr4_1:1679087-1679106 | Msa0528750:intron | 35.0% | |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | - | chr4_1:1679413-1679432 | Msa0528750:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | + | chr4_1:1679511-1679530 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | + | chr4_1:1679515-1679534 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | + | chr4_1:1679609-1679628 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | - | chr4_1:1679674-1679693 | Msa0528750:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | - | chr4_1:1679675-1679694 | Msa0528750:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | + | chr4_1:1679828-1679847 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | - | chr4_1:1680027-1680046 | Msa0528750:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+CGG | - | chr4_1:1680049-1680068 | Msa0528750:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | + | chr4_1:1680173-1680192 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | + | chr4_1:1680175-1680194 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | + | chr4_1:1680258-1680277 | None:intergenic | 35.0% | |
| GTGTTATGAATTGGAATAGG+TGG | + | chr4_1:1680279-1680298 | None:intergenic | 35.0% | |
| GATGAAGAAGAAGGAGAATG+CGG | - | chr4_1:1677277-1677296 | Msa0528750:exon | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | - | chr4_1:1677298-1677317 | Msa0528750:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | - | chr4_1:1677301-1677320 | Msa0528750:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | - | chr4_1:1677429-1677448 | Msa0528750:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | - | chr4_1:1677456-1677475 | Msa0528750:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | - | chr4_1:1677492-1677511 | Msa0528750:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | - | chr4_1:1677513-1677532 | Msa0528750:CDS | 40.0% | |
| ACTGTGTATCAGTGTATGAG+AGG | - | chr4_1:1677722-1677741 | Msa0528750:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | - | chr4_1:1677728-1677747 | Msa0528750:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | - | chr4_1:1677729-1677748 | Msa0528750:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | + | chr4_1:1677890-1677909 | None:intergenic | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | + | chr4_1:1678145-1678164 | None:intergenic | 40.0% | |
| GAGTAGCGCTATTTAGTTAG+TGG | + | chr4_1:1678266-1678285 | None:intergenic | 40.0% | |
| GCCGATCAAACTAAATAGCT+AGG | + | chr4_1:1678369-1678388 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | - | chr4_1:1678374-1678393 | Msa0528750:intron | 40.0% |
| !! | TCCTTTTCAGCTTGCTTTGA+GGG | + | chr4_1:1678543-1678562 | None:intergenic | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | - | chr4_1:1678624-1678643 | Msa0528750:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | + | chr4_1:1678629-1678648 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | + | chr4_1:1678661-1678680 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | - | chr4_1:1678668-1678687 | Msa0528750:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | - | chr4_1:1678738-1678757 | Msa0528750:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | - | chr4_1:1678994-1679013 | Msa0528750:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+AGG | + | chr4_1:1679142-1679161 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | + | chr4_1:1679157-1679176 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | - | chr4_1:1679169-1679188 | Msa0528750:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | - | chr4_1:1679170-1679189 | Msa0528750:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | + | chr4_1:1679512-1679531 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | + | chr4_1:1679572-1679591 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | + | chr4_1:1679634-1679653 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | - | chr4_1:1679651-1679670 | Msa0528750:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | + | chr4_1:1680116-1680135 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | + | chr4_1:1680152-1680171 | None:intergenic | 40.0% |
| ! | ATGGTTTGGCATCGGATTTG+GGG | + | chr4_1:1677189-1677208 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | + | chr4_1:1677190-1677209 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | + | chr4_1:1677191-1677210 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | + | chr4_1:1677197-1677216 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | + | chr4_1:1677208-1677227 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | + | chr4_1:1677266-1677285 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | - | chr4_1:1677304-1677323 | Msa0528750:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | + | chr4_1:1677309-1677328 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | - | chr4_1:1677330-1677349 | Msa0528750:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | - | chr4_1:1677390-1677409 | Msa0528750:CDS | 45.0% |
| !! | AGGGGCTTCTTGTTGATTCT+CGG | + | chr4_1:1677551-1677570 | None:intergenic | 45.0% |
| GGCCAAACCAAACAAGTACT+AGG | + | chr4_1:1677951-1677970 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_1:1678293-1678312 | Msa0528750:intron | 45.0% |
| !! | TTACCGTTGACTCCAACTCA+CGG | + | chr4_1:1678512-1678531 | None:intergenic | 45.0% |
| !! | CTCCTTTTCAGCTTGCTTTG+AGG | + | chr4_1:1678544-1678563 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | - | chr4_1:1678581-1678600 | Msa0528750:intron | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | - | chr4_1:1678618-1678637 | Msa0528750:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | - | chr4_1:1678650-1678669 | Msa0528750:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | - | chr4_1:1678674-1678693 | Msa0528750:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | + | chr4_1:1678739-1678758 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | - | chr4_1:1678737-1678756 | Msa0528750:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | + | chr4_1:1678766-1678785 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | - | chr4_1:1678980-1678999 | Msa0528750:intron | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | + | chr4_1:1679763-1679782 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | + | chr4_1:1679794-1679813 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | + | chr4_1:1679795-1679814 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | - | chr4_1:1679911-1679930 | Msa0528750:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | - | chr4_1:1679976-1679995 | Msa0528750:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | + | chr4_1:1680113-1680132 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | - | chr4_1:1680328-1680347 | Msa0528750:five_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | + | chr4_1:1677605-1677624 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | + | chr4_1:1677606-1677625 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | + | chr4_1:1678864-1678883 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | + | chr4_1:1677172-1677191 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | + | chr4_1:1677177-1677196 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | + | chr4_1:1677178-1677197 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | + | chr4_1:1677203-1677222 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCAC+CGG | - | chr4_1:1677216-1677235 | Msa0528750:three_prime_UTR | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | - | chr4_1:1677268-1677287 | Msa0528750:exon | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | - | chr4_1:1677329-1677348 | Msa0528750:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | + | chr4_1:1677466-1677485 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | + | chr4_1:1677467-1677486 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | + | chr4_1:1677545-1677564 | None:intergenic | 50.0% |
| !! | GGCTTCTTGTTGATTCTCGG+CGG | + | chr4_1:1677548-1677567 | None:intergenic | 50.0% |
| !! | ATGGATTGGGACGAGACACT+GGG | - | chr4_1:1678427-1678446 | Msa0528750:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | - | chr4_1:1678506-1678525 | Msa0528750:intron | 50.0% |
| GCCCTCAAAGCAAGCTGAAA+AGG | - | chr4_1:1678539-1678558 | Msa0528750:intron | 50.0% | |
| TGAAAAGGAGCAACCAGCTC+CGG | - | chr4_1:1678554-1678573 | Msa0528750:intron | 50.0% | |
| GAAGGCCGAAAACAAAGAGG+AGG | - | chr4_1:1678584-1678603 | Msa0528750:intron | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | - | chr4_1:1678588-1678607 | Msa0528750:intron | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | + | chr4_1:1678592-1678611 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | - | chr4_1:1678589-1678608 | Msa0528750:intron | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | - | chr4_1:1678590-1678609 | Msa0528750:intron | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | - | chr4_1:1678649-1678668 | Msa0528750:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | - | chr4_1:1678686-1678705 | Msa0528750:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | - | chr4_1:1678709-1678728 | Msa0528750:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | + | chr4_1:1678786-1678805 | None:intergenic | 50.0% |
| !! | TCTCTTGGTAACGAGCAGTG+AGG | - | chr4_1:1679428-1679447 | Msa0528750:intron | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | + | chr4_1:1679558-1679577 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | + | chr4_1:1679564-1679583 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | + | chr4_1:1679796-1679815 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | - | chr4_1:1679841-1679860 | Msa0528750:intron | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | + | chr4_1:1679872-1679891 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | - | chr4_1:1679908-1679927 | Msa0528750:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | - | chr4_1:1679914-1679933 | Msa0528750:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | - | chr4_1:1679940-1679959 | Msa0528750:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | - | chr4_1:1679958-1679977 | Msa0528750:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | - | chr4_1:1680000-1680019 | Msa0528750:CDS | 50.0% |
| GAGGATGGGTCCGTAGTAAT+CGG | + | chr4_1:1680062-1680081 | None:intergenic | 50.0% | |
| TTACTACGGACCCATCCTCA+TGG | - | chr4_1:1680063-1680082 | Msa0528750:CDS | 50.0% | |
| TGCTTCTCAGCCATGAGGAT+GGG | + | chr4_1:1680076-1680095 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | + | chr4_1:1680081-1680100 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGATTGGGAAG+AGG | + | chr4_1:1677217-1677236 | None:intergenic | 55.0% |
| ! | GACTCCGGTGGTGGTTGATT+GGG | + | chr4_1:1677223-1677242 | None:intergenic | 55.0% |
| ! | AGACTCCGGTGGTGGTTGAT+TGG | + | chr4_1:1677224-1677243 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | + | chr4_1:1677238-1677257 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | + | chr4_1:1677263-1677282 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | - | chr4_1:1677477-1677496 | Msa0528750:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | + | chr4_1:1677542-1677561 | None:intergenic | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_1:1678291-1678310 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_1:1678288-1678307 | Msa0528750:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | - | chr4_1:1678426-1678445 | Msa0528750:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | + | chr4_1:1678503-1678522 | None:intergenic | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | + | chr4_1:1678576-1678595 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | - | chr4_1:1678587-1678606 | Msa0528750:intron | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | - | chr4_1:1678597-1678616 | Msa0528750:intron | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | - | chr4_1:1678641-1678660 | Msa0528750:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | - | chr4_1:1678708-1678727 | Msa0528750:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | - | chr4_1:1678710-1678729 | Msa0528750:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | + | chr4_1:1678787-1678806 | None:intergenic | 55.0% | |
| TTGCTCTTCGACGCGCTTCT+CGG | + | chr4_1:1678799-1678818 | None:intergenic | 55.0% | |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | - | chr4_1:1679757-1679776 | Msa0528750:intron | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | - | chr4_1:1679844-1679863 | Msa0528750:intron | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | - | chr4_1:1679868-1679887 | Msa0528750:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | - | chr4_1:1679871-1679890 | Msa0528750:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | - | chr4_1:1679878-1679897 | Msa0528750:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | - | chr4_1:1679887-1679906 | Msa0528750:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | - | chr4_1:1679888-1679907 | Msa0528750:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | - | chr4_1:1679939-1679958 | Msa0528750:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | + | chr4_1:1679951-1679970 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | - | chr4_1:1679952-1679971 | Msa0528750:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | + | chr4_1:1680077-1680096 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | - | chr4_1:1680102-1680121 | Msa0528750:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | + | chr4_1:1677169-1677188 | None:intergenic | 60.0% |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | + | chr4_1:1677248-1677267 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | - | chr4_1:1678497-1678516 | Msa0528750:intron | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | - | chr4_1:1678557-1678576 | Msa0528750:intron | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | - | chr4_1:1678598-1678617 | Msa0528750:intron | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | + | chr4_1:1678713-1678732 | None:intergenic | 60.0% |
| GCCTCCACAGCTGCTTGATC+AGG | + | chr4_1:1679848-1679867 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | - | chr4_1:1679860-1679879 | Msa0528750:intron | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+TGG | + | chr4_1:1677235-1677254 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | + | chr4_1:1677247-1677266 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | - | chr4_1:1677247-1677266 | Msa0528750:three_prime_UTR | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | + | chr4_1:1677260-1677279 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | + | chr4_1:1677539-1677558 | None:intergenic | 65.0% |
| ACCAGCTCCGGAGGCTACGA+AGG | - | chr4_1:1678566-1678585 | Msa0528750:intron | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | - | chr4_1:1679748-1679767 | Msa0528750:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | - | chr4_1:1677159-1677178 | Msa0528750:three_prime_UTR | 70.0% | |
| GGTTCGGGAGACTCCGGTGG+TGG | + | chr4_1:1677232-1677251 | None:intergenic | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | + | chr4_1:1677253-1677272 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | - | chr4_1:1677252-1677271 | Msa0528750:three_prime_UTR | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | + | chr4_1:1678570-1678589 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 1677091 | 1680351 | 1677091 | ID=Msa0528750;Name=Msa0528750 |
| chr4_1 | mRNA | 1677091 | 1680351 | 1677091 | ID=Msa0528750-mRNA-1;Parent=Msa0528750;Name=Msa0528750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|388 |
| chr4_1 | exon | 1677091 | 1677685 | 1677091 | ID=Msa0528750-mRNA-1:exon:512;Parent=Msa0528750-mRNA-1 |
| chr4_1 | exon | 1678601 | 1678936 | 1678601 | ID=Msa0528750-mRNA-1:exon:511;Parent=Msa0528750-mRNA-1 |
| chr4_1 | exon | 1679861 | 1680351 | 1679861 | ID=Msa0528750-mRNA-1:exon:510;Parent=Msa0528750-mRNA-1 |
| chr4_1 | five_prime_UTR | 1680286 | 1680351 | 1680286 | ID=Msa0528750-mRNA-1:five_prime_utr;Parent=Msa0528750-mRNA-1 |
| chr4_1 | CDS | 1679861 | 1680285 | 1679861 | ID=Msa0528750-mRNA-1:cds;Parent=Msa0528750-mRNA-1 |
| chr4_1 | CDS | 1678601 | 1678936 | 1678601 | ID=Msa0528750-mRNA-1:cds;Parent=Msa0528750-mRNA-1 |
| chr4_1 | CDS | 1677280 | 1677685 | 1677280 | ID=Msa0528750-mRNA-1:cds;Parent=Msa0528750-mRNA-1 |
| chr4_1 | three_prime_UTR | 1677091 | 1677279 | 1677091 | ID=Msa0528750-mRNA-1:three_prime_utr;Parent=Msa0528750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
