AlfalfaGEDB | Msa0528820

M. sativa cultivar zhongmu-4 / Msa0528820

KEGG: -
GO: -
PFAM: PF07802.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0528820	XP_013456758.1	88.144	388	15	1	1	388	1	357	0.0	586

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0528820	A0A072ULX9	88.144	388	15	1	1	388	1	357	0.0	586

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002430	Msa0528820	0.808964	2.390748e-50	-8.615850e-47
Msa0528750	Msa0528820	0.973903	3.186976e-137	-8.615850e-47
Msa0528820	Msa0610000	0.876353	1.493306e-68	-8.615850e-47
Msa0528820	Msa0648620	0.821885	3.182805e-53	-8.615850e-47
Msa0528820	Msa0648670	0.839031	2.020376e-57	-8.615850e-47
Msa0528820	Msa0650370	0.971322	5.557208e-133	-8.615850e-47
Msa0528820	Msa0943180	0.824727	6.899137e-54	-8.615850e-47
Msa0528820	Msa1037080	0.802227	6.199747e-49	-8.615850e-47
Msa0528820	Msa1116940	0.856960	2.259350e-62	-8.615850e-47
Msa0528820	Msa1136880	0.829307	5.539275e-55	-8.615850e-47

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0528820	MtrunA17_Chr4g0042691	88.144	388	15	1	1	388	1	357	0.0	586

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0528820	AT1G14060.1	49.580	119	39	3	4	105	26	140	2.32e-27	107
Msa0528820	AT1G14060.1	69.492	59	18	0	304	362	82	140	3.82e-26	103
Msa0528820	AT1G14060.1	46.667	90	48	0	148	237	51	140	1.19e-18	83.2
Msa0528820	AT5G02210.1	47.191	89	44	1	34	119	65	153	9.10e-18	80.5
Msa0528820	AT5G02210.1	50.000	78	30	4	306	379	80	152	2.65e-14	70.5
Msa0528820	AT5G02210.1	40.000	75	42	1	175	246	74	148	4.94e-11	61.2
Msa0528820	AT5G57570.1	54.545	66	29	1	47	111	53	118	3.67e-14	69.7
Msa0528820	AT5G57640.1	38.129	139	62	5	245	365	13	145	5.37e-14	71.2
Msa0528820	AT5G57640.1	45.333	75	41	0	45	119	82	156	1.86e-13	69.7

Showing 1 to 9 of 9 entries

Previous1Next

Find 131 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGCAACCAGCTCCGG+AGG	0.645801	4_1:+1797468	Msa0528820:CDS
AACCGCCTCCTTTCATGAAT+AGG	0.411096	4_1:-1796217	None:intergenic
AACCGTCTCCTTTAATGAAC+AGG	0.424322	4_1:-1797537	None:intergenic
AACTTTGTATGAGAGAAAGA+GGG	0.668098	4_1:+1799234	Msa0528820:three_prime_UTR
ACAATTCTCCCATTCAACCA+AGG	0.704048	4_1:-1797569	None:intergenic
ACATTTGATTAGAATGAGAA+GGG	0.532264	4_1:-1797732	None:intergenic
ACCAGCTCCGGAGGCTACGA+AGG	0.553191	4_1:+1797477	Msa0528820:CDS
ACCTCGCTGAAAAGTGCTCT+GGG	0.429532	4_1:+1797620	Msa0528820:CDS
ACTCGTTTGTTGCAGTGTAT+GGG	0.481333	4_1:+1797649	Msa0528820:CDS
ACTTCTGATTAGAATGAGAA+GGG	0.520091	4_1:-1799082	None:intergenic

Showing 1 to 10 of 131 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTTACACAACAGCAAAT+AGG	-	chr4_1:1796816-1796835	None:intergenic	30.0%
ATCATCCTTTACAATGCATA+TGG	+	chr4_1:1796834-1796853	Msa0528820:intron	30.0%
TCAAAAGTCAACAAACTAAG+TGG	-	chr4_1:1796883-1796902	None:intergenic	30.0%
GGTTGAAGTATGTGATTAAA+TGG	+	chr4_1:1796946-1796965	Msa0528820:intron	30.0%
TTCAGTAATTAGTGATTCAG+TGG	+	chr4_1:1797073-1797092	Msa0528820:intron	30.0%
CATTTGATTAGAATGAGAAG+GGG	-	chr4_1:1797734-1797753	None:intergenic	30.0%
CACATTTGATTAGAATGAGA+AGG	-	chr4_1:1797736-1797755	None:intergenic	30.0%
TCTAGTCTCTTACTACTAAA+TGG	-	chr4_1:1798368-1798387	None:intergenic	30.0%
AGTTGTAGAGTTAAGCTATT+TGG	-	chr4_1:1798430-1798449	None:intergenic	30.0%
CATACACTGTTTCAAAAGAT+CGG	-	chr4_1:1798940-1798959	None:intergenic	30.0%

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	1796002	1799262	1796002	ID=Msa0528820;Name=Msa0528820
chr4_1	mRNA	1796002	1799262	1796002	ID=Msa0528820-mRNA-1;Parent=Msa0528820;Name=Msa0528820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66\|1\|1\|1\|1\|1\|3\|189\|388
chr4_1	exon	1796002	1796492	1796002	ID=Msa0528820-mRNA-1:exon:542;Parent=Msa0528820-mRNA-1
chr4_1	exon	1797417	1797752	1797417	ID=Msa0528820-mRNA-1:exon:543;Parent=Msa0528820-mRNA-1
chr4_1	exon	1798668	1799262	1798668	ID=Msa0528820-mRNA-1:exon:544;Parent=Msa0528820-mRNA-1
chr4_1	five_prime_UTR	1796002	1796067	1796002	ID=Msa0528820-mRNA-1:five_prime_utr;Parent=Msa0528820-mRNA-1
chr4_1	CDS	1796068	1796492	1796068	ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1
chr4_1	CDS	1797417	1797752	1797417	ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1
chr4_1	CDS	1798668	1799073	1798668	ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1
chr4_1	three_prime_UTR	1799074	1799262	1799074	ID=Msa0528820-mRNA-1:three_prime_utr;Parent=Msa0528820-mRNA-1

Gene Sequence

>Msa0528820

ATGTCGACGCCGCCGAACCCATCGGAAAACCCCAAATCCGATGCCAAACCATCAGATCCTCTTCCCAATCAACCACCACCGGAGTCTCCCGAACCAGAAACCGCCGCCGAAGGCGAGGAAGATGAAGAAGAAGGAGAATGCGGATTCTGCCTATTCATGAAAGGAGGCGGTTGCAAAGACACGTTCATCGCTTGGGAAGATTGCGTGAAAGAAGCTGAAGACAAAAATGAAGATCTTGTTGAAAAGTGCGCTGAGGTTACTGCAAAATTGAAGCAGTGTATGGATGAACATTCGGATTATTATGAACCCATTCTTAGGGCGGAGAAGCATGCTGAAGAGCAGGTTACCATTGAATTGGAGAAAGAAAAGCAGGATTTGGCCGCCGCCACCGCCGAGAATCAACAAGAAGCCCCTTCTAATCAAAATGACCGTGAGTTGGAGTCAACGGTAATTTCAACGCCCTCAAAGCAAGCTGAAAAGGAGCAACCAGCTCCGGAGGCTACGAAGGCCGAAAACAAAGAGGAGGAGGGGGATTGCGGGTTCTGCCTGTTCATTAAAGGAGACGGTTGCAGAGACACCTTGGTTGAATGGGAGAATTGTGTGAAAGAGGCGAAGGAGAAGAAAGAGGACCTCGCTGAAAAGTGCTCTGGGGTCACCACTCGTTTGTTGCAGTGTATGGGTTCCAGTTCCGATTACTACAAACCCATCATCAAGACCGAGAAGCGCGTCGAAGAGCAAGCCCCTTCTCATTCTAATCAAATCGACCGTGAGTTGGAGTCTAAGGCAACATCGACGCCCCTGAAGCATGACGAAAACGAGCAATCTAGTGCCAAGACAGAAAATGTTTCTCCTGATCAAGCAGCTGTGGAGGCTCCGAAAGCAGAAGGCGAAGAGGAGGAAGAAGGTGAGTGCGGGTTCTGCGTGTTCATGAAAGGAGGTGGTTGCAGAGACACCTTCGTCGATTGGGAGAACTGCATGGATGAGGCAGAGAAGAACAAAGAGGACGTCGTTCAAAAGTGCTCTCAGGTCACCGATCTTTTGAAACAGTGTATGGATTCTCATTCCGATTACTACGGACCCATCCTCATGGCTGAGAAGCACATTGAAGAACAAGCCGCCATCGACTTGGAGAAAGAAAAGCTAGATTCAGTAACCAGTAACAAATAA

Protein sequence

>Msa0528820

MSTPPNPSENPKSDAKPSDPLPNQPPPESPEPETAAEGEEDEEEGECGFCLFMKGGGCKDTFIAWEDCVKEAEDKNEDLVEKCAEVTAKLKQCMDEHSDYYEPILRAEKHAEEQVTIELEKEKQDLAAATAENQQEAPSNQNDRELESTVISTPSKQAEKEQPAPEATKAENKEEEGDCGFCLFIKGDGCRDTLVEWENCVKEAKEKKEDLAEKCSGVTTRLLQCMGSSSDYYKPIIKTEKRVEEQAPSHSNQIDRELESKATSTPLKHDENEQSSAKTENVSPDQAAVEAPKAEGEEEEEGECGFCVFMKGGGCRDTFVDWENCMDEAEKNKEDVVQKCSQVTDLLKQCMDSHSDYYGPILMAEKHIEEQAAIDLEKEKLDSVTSNK*