Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528820 | XP_013456758.1 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528820 | A0A072ULX9 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa0528820 | 0.808964 | 2.390748e-50 | -8.615850e-47 |
| Msa0528750 | Msa0528820 | 0.973903 | 3.186976e-137 | -8.615850e-47 |
| Msa0528820 | Msa0610000 | 0.876353 | 1.493306e-68 | -8.615850e-47 |
| Msa0528820 | Msa0648620 | 0.821885 | 3.182805e-53 | -8.615850e-47 |
| Msa0528820 | Msa0648670 | 0.839031 | 2.020376e-57 | -8.615850e-47 |
| Msa0528820 | Msa0650370 | 0.971322 | 5.557208e-133 | -8.615850e-47 |
| Msa0528820 | Msa0943180 | 0.824727 | 6.899137e-54 | -8.615850e-47 |
| Msa0528820 | Msa1037080 | 0.802227 | 6.199747e-49 | -8.615850e-47 |
| Msa0528820 | Msa1116940 | 0.856960 | 2.259350e-62 | -8.615850e-47 |
| Msa0528820 | Msa1136880 | 0.829307 | 5.539275e-55 | -8.615850e-47 |
| Msa0528820 | Msa1235950 | 0.818768 | 1.650060e-52 | -8.615850e-47 |
| Msa0528820 | Msa1235980 | 0.819031 | 1.437743e-52 | -8.615850e-47 |
| Msa0528820 | Msa1237040 | 0.801307 | 9.575707e-49 | -8.615850e-47 |
| Msa0528820 | Msa1257450 | 0.820554 | 6.449492e-53 | -8.615850e-47 |
| Msa0528820 | Msa1456160 | 0.990064 | 6.797052e-181 | -8.615850e-47 |
| Msa0528820 | Msa1465700 | 0.812909 | 3.344474e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528820 | MtrunA17_Chr4g0042691 | 88.144 | 388 | 15 | 1 | 1 | 388 | 1 | 357 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0528820 | AT1G14060.1 | 49.580 | 119 | 39 | 3 | 4 | 105 | 26 | 140 | 2.32e-27 | 107 |
| Msa0528820 | AT1G14060.1 | 69.492 | 59 | 18 | 0 | 304 | 362 | 82 | 140 | 3.82e-26 | 103 |
| Msa0528820 | AT1G14060.1 | 46.667 | 90 | 48 | 0 | 148 | 237 | 51 | 140 | 1.19e-18 | 83.2 |
| Msa0528820 | AT5G02210.1 | 47.191 | 89 | 44 | 1 | 34 | 119 | 65 | 153 | 9.10e-18 | 80.5 |
| Msa0528820 | AT5G02210.1 | 50.000 | 78 | 30 | 4 | 306 | 379 | 80 | 152 | 2.65e-14 | 70.5 |
| Msa0528820 | AT5G02210.1 | 40.000 | 75 | 42 | 1 | 175 | 246 | 74 | 148 | 4.94e-11 | 61.2 |
| Msa0528820 | AT5G57570.1 | 54.545 | 66 | 29 | 1 | 47 | 111 | 53 | 118 | 3.67e-14 | 69.7 |
| Msa0528820 | AT5G57640.1 | 38.129 | 139 | 62 | 5 | 245 | 365 | 13 | 145 | 5.37e-14 | 71.2 |
| Msa0528820 | AT5G57640.1 | 45.333 | 75 | 41 | 0 | 45 | 119 | 82 | 156 | 1.86e-13 | 69.7 |
Find 131 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCCTTCGGCGGCGGTTTC+TGG | 0.056859 | 4_1:-1796161 | None:intergenic |
| ATTATTATGAACCCATTCTT+AGG | 0.179261 | 4_1:+1796363 | Msa0528820:CDS |
| CACTCGTTTGTTGCAGTGTA+TGG | 0.222714 | 4_1:+1797648 | Msa0528820:CDS |
| GGCTTCCTGTTATTTGTTAC+TGG | 0.225860 | 4_1:-1799060 | None:intergenic |
| TGATGGTTTGGCATCGGATT+TGG | 0.227434 | 4_1:-1796099 | None:intergenic |
| GATGGTTTGGCATCGGATTT+GGG | 0.232683 | 4_1:-1796098 | None:intergenic |
| TCCTCTTCGCCTTCTGCTTT+CGG | 0.242262 | 4_1:-1798780 | None:intergenic |
| GGGTTCTGCCTGTTCATTAA+AGG | 0.259132 | 4_1:+1797529 | Msa0528820:CDS |
| TTTAAATAGGTGTTATGAAT+TGG | 0.263964 | 4_1:-1799196 | None:intergenic |
| TCGGCGGCGGTTTCTGGTTC+GGG | 0.299995 | 4_1:-1796155 | None:intergenic |
| TTCGGCGGCGGTTTCTGGTT+CGG | 0.312231 | 4_1:-1796156 | None:intergenic |
| CGACCGTGAGTTGGAGTCTA+AGG | 0.345428 | 4_1:+1798668 | Msa0528820:CDS |
| CGCTTCTCGGTCTTGATGAT+GGG | 0.346732 | 4_1:-1797694 | None:intergenic |
| GACTCCGGTGGTGGTTGATT+GGG | 0.354635 | 4_1:-1796131 | None:intergenic |
| GCGCTTCTCGGTCTTGATGA+TGG | 0.357410 | 4_1:-1797695 | None:intergenic |
| TTGCTCTTCGACGCGCTTCT+CGG | 0.361977 | 4_1:-1797707 | None:intergenic |
| GGAGAAAGAAAAGCAGGATT+TGG | 0.362471 | 4_1:+1796424 | Msa0528820:CDS |
| TTCTTCATCTTCCTCGCCTT+CGG | 0.365927 | 4_1:-1796174 | None:intergenic |
| AGGGGCTTCTTGTTGATTCT+CGG | 0.366247 | 4_1:-1796459 | None:intergenic |
| GCCTCCACAGCTGCTTGATC+AGG | 0.377475 | 4_1:-1798756 | None:intergenic |
| GATGATGGGTTTGTAGTAAT+CGG | 0.384814 | 4_1:-1797680 | None:intergenic |
| AGACTCCGGTGGTGGTTGAT+TGG | 0.385111 | 4_1:-1796132 | None:intergenic |
| AGAGCAGGTTACCATTGAAT+TGG | 0.397436 | 4_1:+1796403 | Msa0528820:CDS |
| AGTAACCAGTAACAAATAAC+AGG | 0.410673 | 4_1:+1799055 | Msa0528820:exon |
| AACCGCCTCCTTTCATGAAT+AGG | 0.411096 | 4_1:-1796217 | None:intergenic |
| ATGCTTCTCCGCCCTAAGAA+TGG | 0.411420 | 4_1:-1796375 | None:intergenic |
| GCAGAGACACCTTGGTTGAA+TGG | 0.415028 | 4_1:+1797560 | Msa0528820:CDS |
| ATCTTCCTCGCCTTCGGCGG+CGG | 0.416651 | 4_1:-1796168 | None:intergenic |
| AACCGTCTCCTTTAATGAAC+AGG | 0.424322 | 4_1:-1797537 | None:intergenic |
| ACCTCGCTGAAAAGTGCTCT+GGG | 0.429532 | 4_1:+1797620 | Msa0528820:CDS |
| GCAAAGACACGTTCATCGCT+TGG | 0.430395 | 4_1:+1796240 | Msa0528820:CDS |
| GACCTCGCTGAAAAGTGCTC+TGG | 0.431197 | 4_1:+1797619 | Msa0528820:CDS |
| GGGAAGAGGATCTGATGGTT+TGG | 0.434881 | 4_1:-1796111 | None:intergenic |
| GCCTTCGTAGCCTCCGGAGC+TGG | 0.437486 | 4_1:-1797478 | None:intergenic |
| CAGAGACACCTTGGTTGAAT+GGG | 0.446480 | 4_1:+1797561 | Msa0528820:CDS |
| CAGAGACACCTTCGTCGATT+GGG | 0.447393 | 4_1:+1798851 | Msa0528820:CDS |
| GAGGATGGGTCCGTAGTAAT+CGG | 0.451688 | 4_1:-1798970 | None:intergenic |
| TGCTTCTCCGCCCTAAGAAT+GGG | 0.453023 | 4_1:-1796374 | None:intergenic |
| CAAAGACACGTTCATCGCTT+GGG | 0.455392 | 4_1:+1796241 | Msa0528820:CDS |
| TTATTATGAACCCATTCTTA+GGG | 0.456966 | 4_1:+1796364 | Msa0528820:CDS |
| TTGATTCTCGGCGGTGGCGG+CGG | 0.458622 | 4_1:-1796447 | None:intergenic |
| TAGGTGTTATGAATTGGAAT+AGG | 0.458703 | 4_1:-1799190 | None:intergenic |
| GCAGAGACACCTTCGTCGAT+TGG | 0.467963 | 4_1:+1798850 | Msa0528820:CDS |
| GCCCTCAAAGCAAGCTGAAA+AGG | 0.468090 | 4_1:+1797450 | Msa0528820:CDS |
| GGGTTTGTAGTAATCGGAAC+TGG | 0.476444 | 4_1:-1797674 | None:intergenic |
| TGCAAAATTGAAGCAGTGTA+TGG | 0.476710 | 4_1:+1796328 | Msa0528820:CDS |
| ACTCGTTTGTTGCAGTGTAT+GGG | 0.481333 | 4_1:+1797649 | Msa0528820:CDS |
| GGCCGAAAACAAAGAGGAGG+AGG | 0.485890 | 4_1:+1797498 | Msa0528820:CDS |
| TGAAAAGGAGCAACCAGCTC+CGG | 0.488322 | 4_1:+1797465 | Msa0528820:CDS |
| GCAGTGTATGGATGAACATT+CGG | 0.489367 | 4_1:+1796340 | Msa0528820:CDS |
| GAAGGCGAAGAGGAGGAAGA+AGG | 0.494264 | 4_1:+1798789 | Msa0528820:CDS |
| GGTTCGGGAGACTCCGGTGG+TGG | 0.501484 | 4_1:-1796140 | None:intergenic |
| AGAACAAGCCGCCATCGACT+TGG | 0.501554 | 4_1:+1799013 | Msa0528820:CDS |
| CACATTTGATTAGAATGAGA+AGG | 0.505801 | 4_1:-1797733 | None:intergenic |
| TCCTGATCAAGCAGCTGTGG+AGG | 0.510427 | 4_1:+1798755 | Msa0528820:CDS |
| TGCTTCTCAGCCATGAGGAT+GGG | 0.510615 | 4_1:-1798984 | None:intergenic |
| TAACTTTGTATGAGAGAAAG+AGG | 0.511684 | 4_1:+1799233 | Msa0528820:three_prime_UTR |
| TGAATTGGAGAAAGAAAAGC+AGG | 0.511809 | 4_1:+1796418 | Msa0528820:CDS |
| GTTTCTGGTTCGGGAGACTC+CGG | 0.516638 | 4_1:-1796146 | None:intergenic |
| ACTTCTGATTAGAATGAGAA+GGG | 0.520091 | 4_1:-1799082 | None:intergenic |
| AGAAACCGCCGCCGAAGGCG+AGG | 0.522261 | 4_1:+1796163 | Msa0528820:CDS |
| GAACCAGAAACCGCCGCCGA+AGG | 0.523723 | 4_1:+1796158 | Msa0528820:CDS |
| TGTATGAGAGAAAGAGGGTC+TGG | 0.529465 | 4_1:+1799239 | Msa0528820:three_prime_UTR |
| CCGAAAACAAAGAGGAGGAG+GGG | 0.530892 | 4_1:+1797500 | Msa0528820:CDS |
| TGCCTGTTCATTAAAGGAGA+CGG | 0.531952 | 4_1:+1797535 | Msa0528820:CDS |
| ACATTTGATTAGAATGAGAA+GGG | 0.532264 | 4_1:-1797732 | None:intergenic |
| TTCTTGTTGATTCTCGGCGG+TGG | 0.533119 | 4_1:-1796453 | None:intergenic |
| GAAAGCAGAAGGCGAAGAGG+AGG | 0.535433 | 4_1:+1798782 | Msa0528820:CDS |
| CGTCGTTCAAAAGTGCTCTC+AGG | 0.535919 | 4_1:+1798911 | Msa0528820:CDS |
| CATACACTGTTTCAAAAGAT+CGG | 0.536650 | 4_1:-1798937 | None:intergenic |
| GGCGAGGAAGATGAAGAAGA+AGG | 0.541499 | 4_1:+1796179 | Msa0528820:CDS |
| TTCTCCTGATCAAGCAGCTG+TGG | 0.544927 | 4_1:+1798752 | Msa0528820:CDS |
| ATAAAGTAAGGAACAAGGCA+AGG | 0.545331 | 4_1:+1795989 | None:intergenic |
| TTGGGAGAACTGCATGGATG+AGG | 0.546606 | 4_1:+1798869 | Msa0528820:CDS |
| TTCTTTCTCCAAGTCGATGG+CGG | 0.550499 | 4_1:-1799021 | None:intergenic |
| GCCGAAAACAAAGAGGAGGA+GGG | 0.552949 | 4_1:+1797499 | Msa0528820:CDS |
| ACCAGCTCCGGAGGCTACGA+AGG | 0.553191 | 4_1:+1797477 | Msa0528820:CDS |
| GTGTTATGAATTGGAATAGG+TGG | 0.553552 | 4_1:-1799187 | None:intergenic |
| AGGATCTGATGGTTTGGCAT+CGG | 0.555085 | 4_1:-1796105 | None:intergenic |
| TGCCTATTCATGAAAGGAGG+CGG | 0.555309 | 4_1:+1796215 | Msa0528820:CDS |
| AGGAGGAAGAAGGTGAGTGC+GGG | 0.557082 | 4_1:+1798799 | Msa0528820:CDS |
| CACTTCTGATTAGAATGAGA+AGG | 0.557234 | 4_1:-1799083 | None:intergenic |
| GTGCTTCTCAGCCATGAGGA+TGG | 0.557993 | 4_1:-1798985 | None:intergenic |
| TGATTGGGAAGAGGATCTGA+TGG | 0.558958 | 4_1:-1796116 | None:intergenic |
| CGAAAACAAAGAGGAGGAGG+GGG | 0.568503 | 4_1:+1797501 | Msa0528820:CDS |
| GAATTGTGTGAAAGAGGCGA+AGG | 0.570129 | 4_1:+1797585 | Msa0528820:CDS |
| GGAGAAGCATGCTGAAGAGC+AGG | 0.570146 | 4_1:+1796388 | Msa0528820:CDS |
| TTGTTGATTCTCGGCGGTGG+CGG | 0.570486 | 4_1:-1796450 | None:intergenic |
| GGTGGTGGTTGATTGGGAAG+AGG | 0.571966 | 4_1:-1796125 | None:intergenic |
| GATTCTCATTCCGATTACTA+CGG | 0.572132 | 4_1:+1798960 | Msa0528820:CDS |
| GTGGAGGCTCCGAAAGCAGA+AGG | 0.573231 | 4_1:+1798771 | Msa0528820:CDS |
| TGCGTGTTCATGAAAGGAGG+TGG | 0.574556 | 4_1:+1798825 | Msa0528820:CDS |
| GGGTTCTGCGTGTTCATGAA+AGG | 0.574588 | 4_1:+1798819 | Msa0528820:CDS |
| TCTGGTTCGGGAGACTCCGG+TGG | 0.575115 | 4_1:-1796143 | None:intergenic |
| GAGGAGGAAGAAGGTGAGTG+CGG | 0.578095 | 4_1:+1798798 | Msa0528820:CDS |
| AGAGGCGAAGGAGAAGAAAG+AGG | 0.580829 | 4_1:+1797597 | Msa0528820:CDS |
| TCTTCCCAATCAACCACCAC+CGG | 0.583567 | 4_1:+1796127 | Msa0528820:CDS |
| AGACGGTTGCAGAGACACCT+TGG | 0.584640 | 4_1:+1797552 | Msa0528820:CDS |
| GGACTGCAGCGACCGTGAGT+TGG | 0.586739 | 4_1:+1798659 | Msa0528820:intron |
| GAACCGCAGTGACCGTGAGT+TGG | 0.587819 | 4_1:+1797408 | Msa0528820:intron |
| TTCATCTTCCTCGCCTTCGG+CGG | 0.591064 | 4_1:-1796171 | None:intergenic |
| TGACCGTGAGTTGGAGTCAA+CGG | 0.592923 | 4_1:+1797417 | Msa0528820:CDS |
| CGTCGATTGGGAGAACTGCA+TGG | 0.595914 | 4_1:+1798863 | Msa0528820:CDS |
| GATGAAGAAGAAGGAGAATG+CGG | 0.600982 | 4_1:+1796188 | Msa0528820:CDS |
| TTACTACGGACCCATCCTCA+TGG | 0.605217 | 4_1:+1798974 | Msa0528820:CDS |
| ATGGGAGAATTGTGTGAAAG+AGG | 0.614008 | 4_1:+1797579 | Msa0528820:CDS |
| TCCGAAAGCAGAAGGCGAAG+AGG | 0.616552 | 4_1:+1798779 | Msa0528820:CDS |
| GTCGACGCCGCCGAACCCAT+CGG | 0.618932 | 4_1:+1796070 | Msa0528820:CDS |
| GGCTTCTTGTTGATTCTCGG+CGG | 0.626976 | 4_1:-1796456 | None:intergenic |
| TAAAGTAAGGAACAAGGCAA+GGG | 0.628276 | 4_1:+1795990 | None:intergenic |
| ATGGTTTGGCATCGGATTTG+GGG | 0.630819 | 4_1:-1796097 | None:intergenic |
| GGATTCTGCCTATTCATGAA+AGG | 0.631082 | 4_1:+1796209 | Msa0528820:CDS |
| CATTTGATTAGAATGAGAAG+GGG | 0.632779 | 4_1:-1797731 | None:intergenic |
| TTCTGCCTATTCATGAAAGG+AGG | 0.642527 | 4_1:+1796212 | Msa0528820:CDS |
| AAAGGAGCAACCAGCTCCGG+AGG | 0.645801 | 4_1:+1797468 | Msa0528820:CDS |
| TTATGAACCCATTCTTAGGG+CGG | 0.646080 | 4_1:+1796367 | Msa0528820:CDS |
| CTTCTGATTAGAATGAGAAG+GGG | 0.655387 | 4_1:-1799081 | None:intergenic |
| CAATGTGCTTCTCAGCCATG+AGG | 0.656491 | 4_1:-1798989 | None:intergenic |
| TTCTGCGTGTTCATGAAAGG+AGG | 0.661603 | 4_1:+1798822 | Msa0528820:CDS |
| GAAGGCCGAAAACAAAGAGG+AGG | 0.662357 | 4_1:+1797495 | Msa0528820:CDS |
| TACGAAGGCCGAAAACAAAG+AGG | 0.665700 | 4_1:+1797492 | Msa0528820:CDS |
| AACTTTGTATGAGAGAAAGA+GGG | 0.668098 | 4_1:+1799234 | Msa0528820:three_prime_UTR |
| GGATCATGTATGCTATAACA+AGG | 0.669208 | 4_1:-1799166 | None:intergenic |
| TTACCGTTGACTCCAACTCA+CGG | 0.671368 | 4_1:-1797420 | None:intergenic |
| GCAGTTCTCCCAATCGACGA+AGG | 0.672031 | 4_1:-1798859 | None:intergenic |
| TTGCCTTAGACTCCAACTCA+CGG | 0.673830 | 4_1:-1798671 | None:intergenic |
| TGAGGCAGAGAAGAACAAAG+AGG | 0.681593 | 4_1:+1798887 | Msa0528820:CDS |
| CATACACTGCAACAAACGAG+TGG | 0.693657 | 4_1:-1797647 | None:intergenic |
| ACAATTCTCCCATTCAACCA+AGG | 0.704048 | 4_1:-1797569 | None:intergenic |
| TCTTGTTGAAAAGTGCGCTG+AGG | 0.705355 | 4_1:+1796301 | Msa0528820:CDS |
| CCTCGCTGAAAAGTGCTCTG+GGG | 0.729378 | 4_1:+1797621 | Msa0528820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAATTGATAAAATT+AGG | + | chr4_1:1796583-1796602 | Msa0528820:intron | 10.0% |
| !!! | TTGTTTTTTAATTTTTGATA+TGG | + | chr4_1:1796732-1796751 | Msa0528820:intron | 10.0% |
| !! | ATATAAAATAAAAATAGGAA+TGG | - | chr4_1:1797770-1797789 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAACTTAATTGT+TGG | + | chr4_1:1798638-1798657 | Msa0528820:intron | 10.0% |
| !!! | TTTTATCAATTGAAATATGT+GGG | - | chr4_1:1796581-1796600 | None:intergenic | 15.0% |
| !!! | ATTTTATCAATTGAAATATG+TGG | - | chr4_1:1796582-1796601 | None:intergenic | 15.0% |
| !!! | TTCTATTTAATTTGTTGATT+TGG | + | chr4_1:1797009-1797028 | Msa0528820:intron | 15.0% |
| !!! | TCTATTTAATTTGTTGATTT+GGG | + | chr4_1:1797010-1797029 | Msa0528820:intron | 15.0% |
| !!! | TTGTTTTTAATTTTTTGACA+TGG | + | chr4_1:1797981-1798000 | Msa0528820:intron | 15.0% |
| !!! | AAAATCACTTTTGATTAGAA+GGG | - | chr4_1:1796481-1796500 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTGATTAGA+AGG | - | chr4_1:1796482-1796501 | None:intergenic | 20.0% |
| !! | TAAGTGGAATTATTATTGAT+TGG | + | chr4_1:1796682-1796701 | Msa0528820:intron | 20.0% |
| !! | TAATAAGTGGAATTACTAAT+AGG | + | chr4_1:1797931-1797950 | Msa0528820:intron | 20.0% |
| !! | AATTAGAAAAAAAAGAAGCA+TGG | - | chr4_1:1799119-1799138 | None:intergenic | 20.0% |
| !!! | TTTAAATAGGTGTTATGAAT+TGG | - | chr4_1:1799199-1799218 | None:intergenic | 20.0% |
| !!! | GTCAGTAACAAATTTTAAAT+AGG | - | chr4_1:1799212-1799231 | None:intergenic | 20.0% |
| ! | ATTATTATGAACCCATTCTT+AGG | + | chr4_1:1796363-1796382 | Msa0528820:CDS | 25.0% |
| ! | TTATTATGAACCCATTCTTA+GGG | + | chr4_1:1796364-1796383 | Msa0528820:CDS | 25.0% |
| !!! | AAATCACTTTTGATTAGAAG+GGG | - | chr4_1:1796480-1796499 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTGACAATAAG+TGG | + | chr4_1:1796666-1796685 | Msa0528820:intron | 25.0% |
| ! | TTGATATGGTTATCTATAAG+TGG | + | chr4_1:1796746-1796765 | Msa0528820:intron | 25.0% |
| ! | TTTGAGAATCGTTAATAATG+AGG | + | chr4_1:1796898-1796917 | Msa0528820:intron | 25.0% |
| !! | ATAGATATGTGAATCTCTTT+TGG | + | chr4_1:1796924-1796943 | Msa0528820:intron | 25.0% |
| !! | TAGATATGTGAATCTCTTTT+GGG | + | chr4_1:1796925-1796944 | Msa0528820:intron | 25.0% |
| !!! | TGGTAATTGTATTTTGATTG+AGG | + | chr4_1:1797093-1797112 | Msa0528820:intron | 25.0% |
| !!! | GGTAATTGTATTTTGATTGA+GGG | + | chr4_1:1797094-1797113 | Msa0528820:intron | 25.0% |
| ! | AGAGTAGAGATTCTAATTAA+TGG | + | chr4_1:1797134-1797153 | Msa0528820:intron | 25.0% |
| ! | ACATTTGATTAGAATGAGAA+GGG | - | chr4_1:1797735-1797754 | None:intergenic | 25.0% |
| ! | TGATATTTGAGAATCTCTAA+TGG | + | chr4_1:1798121-1798140 | Msa0528820:intron | 25.0% |
| ! | GATATTTGAGAATCTCTAAT+GGG | + | chr4_1:1798122-1798141 | Msa0528820:intron | 25.0% |
| ! | ATATTTGAGAATCTCTAATG+GGG | + | chr4_1:1798123-1798142 | Msa0528820:intron | 25.0% |
| ! | TCACTAATTACTGAATTAGT+TGG | - | chr4_1:1798293-1798312 | None:intergenic | 25.0% |
| ! | TTCAGTAATTAGTGATTCAA+TGG | + | chr4_1:1798298-1798317 | Msa0528820:intron | 25.0% |
| ! | AGACTAGAGATTCTAATTAA+TGG | + | chr4_1:1798380-1798399 | Msa0528820:intron | 25.0% |
| ! | AACTAAATAGCTATAGGTTT+AGG | - | chr4_1:1798514-1798533 | None:intergenic | 25.0% |
| ! | CTTTTCTTTCTCCAATTCAA+TGG | - | chr4_1:1796417-1796436 | None:intergenic | 30.0% |
| ATTCTTACACAACAGCAAAT+AGG | - | chr4_1:1796816-1796835 | None:intergenic | 30.0% | |
| ATCATCCTTTACAATGCATA+TGG | + | chr4_1:1796834-1796853 | Msa0528820:intron | 30.0% | |
| TCAAAAGTCAACAAACTAAG+TGG | - | chr4_1:1796883-1796902 | None:intergenic | 30.0% | |
| GGTTGAAGTATGTGATTAAA+TGG | + | chr4_1:1796946-1796965 | Msa0528820:intron | 30.0% | |
| TTCAGTAATTAGTGATTCAG+TGG | + | chr4_1:1797073-1797092 | Msa0528820:intron | 30.0% | |
| CATTTGATTAGAATGAGAAG+GGG | - | chr4_1:1797734-1797753 | None:intergenic | 30.0% | |
| CACATTTGATTAGAATGAGA+AGG | - | chr4_1:1797736-1797755 | None:intergenic | 30.0% | |
| ! | GTGTTGTCATTTGAAATAAG+TGG | - | chr4_1:1797839-1797858 | None:intergenic | 30.0% |
| !! | CTTTTTCTGGTCATAATAAG+TGG | + | chr4_1:1797918-1797937 | Msa0528820:intron | 30.0% |
| !! | TTGTTGATGATTTATGCCTT+AGG | + | chr4_1:1798034-1798053 | Msa0528820:intron | 30.0% |
| ! | TGAGATATGTGAATCTCTTT+TGG | + | chr4_1:1798149-1798168 | Msa0528820:intron | 30.0% |
| !! | ATGTGTGTTTGACTTCATTT+TGG | + | chr4_1:1798206-1798225 | Msa0528820:intron | 30.0% |
| TCTAGTCTCTTACTACTAAA+TGG | - | chr4_1:1798368-1798387 | None:intergenic | 30.0% | |
| AGTTGTAGAGTTAAGCTATT+TGG | - | chr4_1:1798430-1798449 | None:intergenic | 30.0% | |
| !! | ACCTATAGCTATTTAGTTTG+AGG | + | chr4_1:1798516-1798535 | Msa0528820:intron | 30.0% |
| CATACACTGTTTCAAAAGAT+CGG | - | chr4_1:1798940-1798959 | None:intergenic | 30.0% | |
| AGTAACCAGTAACAAATAAC+AGG | + | chr4_1:1799055-1799074 | Msa0528820:exon | 30.0% | |
| ACTTCTGATTAGAATGAGAA+GGG | - | chr4_1:1799085-1799104 | None:intergenic | 30.0% | |
| ! | TAGGTGTTATGAATTGGAAT+AGG | - | chr4_1:1799193-1799212 | None:intergenic | 30.0% |
| TAACTTTGTATGAGAGAAAG+AGG | + | chr4_1:1799233-1799252 | Msa0528820:three_prime_UTR | 30.0% | |
| AACTTTGTATGAGAGAAAGA+GGG | + | chr4_1:1799234-1799253 | Msa0528820:three_prime_UTR | 30.0% | |
| TGCAAAATTGAAGCAGTGTA+TGG | + | chr4_1:1796328-1796347 | Msa0528820:CDS | 35.0% | |
| TGAATTGGAGAAAGAAAAGC+AGG | + | chr4_1:1796418-1796437 | Msa0528820:CDS | 35.0% | |
| AGGTACCATATGCATTGTAA+AGG | - | chr4_1:1796842-1796861 | None:intergenic | 35.0% | |
| TATGGTACCTAGTACTTGTT+TGG | + | chr4_1:1796852-1796871 | Msa0528820:intron | 35.0% | |
| TACCTAGTACTTGTTTGGTT+TGG | + | chr4_1:1796857-1796876 | Msa0528820:intron | 35.0% | |
| !! | TCTGTGTGTTTGACTTCTTT+TGG | + | chr4_1:1796980-1796999 | Msa0528820:intron | 35.0% |
| !! | CTGTGTGTTTGACTTCTTTT+GGG | + | chr4_1:1796981-1797000 | Msa0528820:intron | 35.0% |
| AGTAGCGCTATTTAGTTAGT+GGG | - | chr4_1:1797176-1797195 | None:intergenic | 35.0% | |
| !! | GCCTAGCTATTTAGTTTGAT+CGG | + | chr4_1:1797276-1797295 | Msa0528820:intron | 35.0% |
| CAGTTACTCAGATATAGTGA+TGG | + | chr4_1:1797319-1797338 | Msa0528820:intron | 35.0% | |
| !! | ACTCAGATATAGTGATGGAT+TGG | + | chr4_1:1797324-1797343 | Msa0528820:intron | 35.0% |
| !! | CTCAGATATAGTGATGGATT+GGG | + | chr4_1:1797325-1797344 | Msa0528820:intron | 35.0% |
| !! | GATGATGGGTTTGTAGTAAT+CGG | - | chr4_1:1797683-1797702 | None:intergenic | 35.0% |
| ACATGGTTGTTATGTATCAG+TGG | + | chr4_1:1797998-1798017 | Msa0528820:intron | 35.0% | |
| !!! | CTGCATTTTGATTGTTCTCT+TGG | + | chr4_1:1798324-1798343 | Msa0528820:intron | 35.0% |
| AGTTAAGCTATTTGGTTGGT+GGG | - | chr4_1:1798422-1798441 | None:intergenic | 35.0% | |
| GTAGAGTTAAGCTATTTGGT+TGG | - | chr4_1:1798426-1798445 | None:intergenic | 35.0% | |
| GCCTCAAACTAAATAGCTAT+AGG | - | chr4_1:1798520-1798539 | None:intergenic | 35.0% | |
| TTAAGTGAGATGAAACACAC+TGG | + | chr4_1:1798585-1798604 | Msa0528820:intron | 35.0% | |
| TAAGTGAGATGAAACACACT+GGG | + | chr4_1:1798586-1798605 | Msa0528820:intron | 35.0% | |
| ! | AGGAGAAACATTTTCTGTCT+TGG | - | chr4_1:1798739-1798758 | None:intergenic | 35.0% |
| !!! | CGATCTTTTGAAACAGTGTA+TGG | + | chr4_1:1798938-1798957 | Msa0528820:CDS | 35.0% |
| GATTCTCATTCCGATTACTA+CGG | + | chr4_1:1798960-1798979 | Msa0528820:CDS | 35.0% | |
| CTTCTGATTAGAATGAGAAG+GGG | - | chr4_1:1799084-1799103 | None:intergenic | 35.0% | |
| CACTTCTGATTAGAATGAGA+AGG | - | chr4_1:1799086-1799105 | None:intergenic | 35.0% | |
| GGATCATGTATGCTATAACA+AGG | - | chr4_1:1799169-1799188 | None:intergenic | 35.0% | |
| GTGTTATGAATTGGAATAGG+TGG | - | chr4_1:1799190-1799209 | None:intergenic | 35.0% | |
| GATGAAGAAGAAGGAGAATG+CGG | + | chr4_1:1796188-1796207 | Msa0528820:CDS | 40.0% | |
| GGATTCTGCCTATTCATGAA+AGG | + | chr4_1:1796209-1796228 | Msa0528820:CDS | 40.0% | |
| TTCTGCCTATTCATGAAAGG+AGG | + | chr4_1:1796212-1796231 | Msa0528820:CDS | 40.0% | |
| GCAGTGTATGGATGAACATT+CGG | + | chr4_1:1796340-1796359 | Msa0528820:CDS | 40.0% | |
| TTATGAACCCATTCTTAGGG+CGG | + | chr4_1:1796367-1796386 | Msa0528820:CDS | 40.0% | |
| AGAGCAGGTTACCATTGAAT+TGG | + | chr4_1:1796403-1796422 | Msa0528820:CDS | 40.0% | |
| GGAGAAAGAAAAGCAGGATT+TGG | + | chr4_1:1796424-1796443 | Msa0528820:CDS | 40.0% | |
| ACTGTGTATCAGTGTATGAG+AGG | + | chr4_1:1796633-1796652 | Msa0528820:intron | 40.0% | |
| TATCAGTGTATGAGAGGTTG+AGG | + | chr4_1:1796639-1796658 | Msa0528820:intron | 40.0% | |
| ATCAGTGTATGAGAGGTTGA+GGG | + | chr4_1:1796640-1796659 | Msa0528820:intron | 40.0% | |
| CAAATAGGCTTAGCTAGCTA+AGG | - | chr4_1:1796801-1796820 | None:intergenic | 40.0% | |
| GAACTAGTTAGCACAGACAA+AGG | - | chr4_1:1797056-1797075 | None:intergenic | 40.0% | |
| GAGTAGCGCTATTTAGTTAG+TGG | - | chr4_1:1797177-1797196 | None:intergenic | 40.0% | |
| GCCGATCAAACTAAATAGCT+AGG | - | chr4_1:1797280-1797299 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGATCGGCTCACT+TGG | + | chr4_1:1797285-1797304 | Msa0528820:intron | 40.0% |
| !! | TCCTTTTCAGCTTGCTTTGA+GGG | - | chr4_1:1797454-1797473 | None:intergenic | 40.0% |
| TGCCTGTTCATTAAAGGAGA+CGG | + | chr4_1:1797535-1797554 | Msa0528820:CDS | 40.0% | |
| AACCGTCTCCTTTAATGAAC+AGG | - | chr4_1:1797540-1797559 | None:intergenic | 40.0% | |
| ACAATTCTCCCATTCAACCA+AGG | - | chr4_1:1797572-1797591 | None:intergenic | 40.0% | |
| ATGGGAGAATTGTGTGAAAG+AGG | + | chr4_1:1797579-1797598 | Msa0528820:CDS | 40.0% | |
| ! | ACTCGTTTGTTGCAGTGTAT+GGG | + | chr4_1:1797649-1797668 | Msa0528820:CDS | 40.0% |
| ! | AGAGAGTGGTTCTCTTTTTC+TGG | + | chr4_1:1797905-1797924 | Msa0528820:intron | 40.0% |
| CAAATAGGCTTAGCTACCTA+AGG | - | chr4_1:1798053-1798072 | None:intergenic | 40.0% | |
| ATTCTCGTGCAATCGCAAAT+AGG | - | chr4_1:1798068-1798087 | None:intergenic | 40.0% | |
| ACGAGAATGATGCTTCATCA+TGG | + | chr4_1:1798080-1798099 | Msa0528820:intron | 40.0% | |
| CGAGAATGATGCTTCATCAT+GGG | + | chr4_1:1798081-1798100 | Msa0528820:intron | 40.0% | |
| GAGTTAAGCTATTTGGTTGG+TGG | - | chr4_1:1798423-1798442 | None:intergenic | 40.0% | |
| CTAATGAATTGCTTGCGTAC+TGG | - | chr4_1:1798483-1798502 | None:intergenic | 40.0% | |
| !! | CATATTTGCTATCACGTGAG+AGG | - | chr4_1:1798545-1798564 | None:intergenic | 40.0% |
| ATGCAGTCACTCAAAGTTAG+TGG | + | chr4_1:1798562-1798581 | Msa0528820:intron | 40.0% | |
| ! | CTTTTCTTTCTCCAAGTCGA+TGG | - | chr4_1:1799027-1799046 | None:intergenic | 40.0% |
| ! | GGCTTCCTGTTATTTGTTAC+TGG | - | chr4_1:1799063-1799082 | None:intergenic | 40.0% |
| ! | ATGGTTTGGCATCGGATTTG+GGG | - | chr4_1:1796100-1796119 | None:intergenic | 45.0% |
| ! | GATGGTTTGGCATCGGATTT+GGG | - | chr4_1:1796101-1796120 | None:intergenic | 45.0% |
| ! | TGATGGTTTGGCATCGGATT+TGG | - | chr4_1:1796102-1796121 | None:intergenic | 45.0% |
| ! | AGGATCTGATGGTTTGGCAT+CGG | - | chr4_1:1796108-1796127 | None:intergenic | 45.0% |
| TGATTGGGAAGAGGATCTGA+TGG | - | chr4_1:1796119-1796138 | None:intergenic | 45.0% | |
| TTCTTCATCTTCCTCGCCTT+CGG | - | chr4_1:1796177-1796196 | None:intergenic | 45.0% | |
| TGCCTATTCATGAAAGGAGG+CGG | + | chr4_1:1796215-1796234 | Msa0528820:CDS | 45.0% | |
| AACCGCCTCCTTTCATGAAT+AGG | - | chr4_1:1796220-1796239 | None:intergenic | 45.0% | |
| CAAAGACACGTTCATCGCTT+GGG | + | chr4_1:1796241-1796260 | Msa0528820:CDS | 45.0% | |
| ! | TCTTGTTGAAAAGTGCGCTG+AGG | + | chr4_1:1796301-1796320 | Msa0528820:CDS | 45.0% |
| !! | AGGGGCTTCTTGTTGATTCT+CGG | - | chr4_1:1796462-1796481 | None:intergenic | 45.0% |
| GGCCAAACCAAACAAGTACT+AGG | - | chr4_1:1796862-1796881 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr4_1:1797204-1797223 | Msa0528820:intron | 45.0% |
| !! | TTACCGTTGACTCCAACTCA+CGG | - | chr4_1:1797423-1797442 | None:intergenic | 45.0% |
| !! | CTCCTTTTCAGCTTGCTTTG+AGG | - | chr4_1:1797455-1797474 | None:intergenic | 45.0% |
| TACGAAGGCCGAAAACAAAG+AGG | + | chr4_1:1797492-1797511 | Msa0528820:CDS | 45.0% | |
| GGGTTCTGCCTGTTCATTAA+AGG | + | chr4_1:1797529-1797548 | Msa0528820:CDS | 45.0% | |
| CAGAGACACCTTGGTTGAAT+GGG | + | chr4_1:1797561-1797580 | Msa0528820:CDS | 45.0% | |
| GAATTGTGTGAAAGAGGCGA+AGG | + | chr4_1:1797585-1797604 | Msa0528820:CDS | 45.0% | |
| CATACACTGCAACAAACGAG+TGG | - | chr4_1:1797650-1797669 | None:intergenic | 45.0% | |
| ! | CACTCGTTTGTTGCAGTGTA+TGG | + | chr4_1:1797648-1797667 | Msa0528820:CDS | 45.0% |
| GGGTTTGTAGTAATCGGAAC+TGG | - | chr4_1:1797677-1797696 | None:intergenic | 45.0% | |
| TGTGTGCAAGAGAAAGAGAG+TGG | + | chr4_1:1797891-1797910 | Msa0528820:intron | 45.0% | |
| TTGCCTTAGACTCCAACTCA+CGG | - | chr4_1:1798674-1798693 | None:intergenic | 45.0% | |
| ! | TCGTTTTCGTCATGCTTCAG+GGG | - | chr4_1:1798705-1798724 | None:intergenic | 45.0% |
| ! | CTCGTTTTCGTCATGCTTCA+GGG | - | chr4_1:1798706-1798725 | None:intergenic | 45.0% |
| TTCTGCGTGTTCATGAAAGG+AGG | + | chr4_1:1798822-1798841 | Msa0528820:CDS | 45.0% | |
| TGAGGCAGAGAAGAACAAAG+AGG | + | chr4_1:1798887-1798906 | Msa0528820:CDS | 45.0% | |
| TTCTTTCTCCAAGTCGATGG+CGG | - | chr4_1:1799024-1799043 | None:intergenic | 45.0% | |
| TGTATGAGAGAAAGAGGGTC+TGG | + | chr4_1:1799239-1799258 | Msa0528820:three_prime_UTR | 45.0% | |
| !! | TAAAAACAATAATTTAAAAA+GGG | - | chr4_1:1796516-1796535 | None:intergenic | 5.0% |
| !! | ATAAAAACAATAATTTAAAA+AGG | - | chr4_1:1796517-1796536 | None:intergenic | 5.0% |
| !! | ATGAAATATAAAATAAAAAT+AGG | - | chr4_1:1797775-1797794 | None:intergenic | 5.0% |
| !! | TTGGGGTTTTCCGATGGGTT+CGG | - | chr4_1:1796083-1796102 | None:intergenic | 50.0% |
| !! | CGGATTTGGGGTTTTCCGAT+GGG | - | chr4_1:1796088-1796107 | None:intergenic | 50.0% |
| !! | TCGGATTTGGGGTTTTCCGA+TGG | - | chr4_1:1796089-1796108 | None:intergenic | 50.0% |
| GGGAAGAGGATCTGATGGTT+TGG | - | chr4_1:1796114-1796133 | None:intergenic | 50.0% | |
| TCTTCCCAATCAACCACCAC+CGG | + | chr4_1:1796127-1796146 | Msa0528820:CDS | 50.0% | |
| GGCGAGGAAGATGAAGAAGA+AGG | + | chr4_1:1796179-1796198 | Msa0528820:CDS | 50.0% | |
| GCAAAGACACGTTCATCGCT+TGG | + | chr4_1:1796240-1796259 | Msa0528820:CDS | 50.0% | |
| TGCTTCTCCGCCCTAAGAAT+GGG | - | chr4_1:1796377-1796396 | None:intergenic | 50.0% | |
| ATGCTTCTCCGCCCTAAGAA+TGG | - | chr4_1:1796378-1796397 | None:intergenic | 50.0% | |
| !! | TTCTTGTTGATTCTCGGCGG+TGG | - | chr4_1:1796456-1796475 | None:intergenic | 50.0% |
| !! | GGCTTCTTGTTGATTCTCGG+CGG | - | chr4_1:1796459-1796478 | None:intergenic | 50.0% |
| !! | ATGGATTGGGACGAGACACT+GGG | + | chr4_1:1797338-1797357 | Msa0528820:intron | 50.0% |
| ! | TGACCGTGAGTTGGAGTCAA+CGG | + | chr4_1:1797417-1797436 | Msa0528820:CDS | 50.0% |
| GCCCTCAAAGCAAGCTGAAA+AGG | + | chr4_1:1797450-1797469 | Msa0528820:CDS | 50.0% | |
| TGAAAAGGAGCAACCAGCTC+CGG | + | chr4_1:1797465-1797484 | Msa0528820:CDS | 50.0% | |
| GAAGGCCGAAAACAAAGAGG+AGG | + | chr4_1:1797495-1797514 | Msa0528820:CDS | 50.0% | |
| GCCGAAAACAAAGAGGAGGA+GGG | + | chr4_1:1797499-1797518 | Msa0528820:CDS | 50.0% | |
| !!! | CCCCTCCTCCTCTTTGTTTT+CGG | - | chr4_1:1797503-1797522 | None:intergenic | 50.0% |
| CCGAAAACAAAGAGGAGGAG+GGG | + | chr4_1:1797500-1797519 | Msa0528820:CDS | 50.0% | |
| CGAAAACAAAGAGGAGGAGG+GGG | + | chr4_1:1797501-1797520 | Msa0528820:CDS | 50.0% | |
| GCAGAGACACCTTGGTTGAA+TGG | + | chr4_1:1797560-1797579 | Msa0528820:CDS | 50.0% | |
| AGAGGCGAAGGAGAAGAAAG+AGG | + | chr4_1:1797597-1797616 | Msa0528820:CDS | 50.0% | |
| !! | ACCTCGCTGAAAAGTGCTCT+GGG | + | chr4_1:1797620-1797639 | Msa0528820:CDS | 50.0% |
| ! | CGCTTCTCGGTCTTGATGAT+GGG | - | chr4_1:1797697-1797716 | None:intergenic | 50.0% |
| !! | TCTCTTGGTAACGAGCAGTG+AGG | + | chr4_1:1798339-1798358 | Msa0528820:intron | 50.0% |
| GCGTACTGGACTTCTGGTAT+AGG | - | chr4_1:1798469-1798488 | None:intergenic | 50.0% | |
| TTGCTTGCGTACTGGACTTC+TGG | - | chr4_1:1798475-1798494 | None:intergenic | 50.0% | |
| ! | GCTCGTTTTCGTCATGCTTC+AGG | - | chr4_1:1798707-1798726 | None:intergenic | 50.0% |
| TTCTCCTGATCAAGCAGCTG+TGG | + | chr4_1:1798752-1798771 | Msa0528820:CDS | 50.0% | |
| TCCTCTTCGCCTTCTGCTTT+CGG | - | chr4_1:1798783-1798802 | None:intergenic | 50.0% | |
| GGGTTCTGCGTGTTCATGAA+AGG | + | chr4_1:1798819-1798838 | Msa0528820:CDS | 50.0% | |
| TGCGTGTTCATGAAAGGAGG+TGG | + | chr4_1:1798825-1798844 | Msa0528820:CDS | 50.0% | |
| ! | CAGAGACACCTTCGTCGATT+GGG | + | chr4_1:1798851-1798870 | Msa0528820:CDS | 50.0% |
| TTGGGAGAACTGCATGGATG+AGG | + | chr4_1:1798869-1798888 | Msa0528820:CDS | 50.0% | |
| !! | CGTCGTTCAAAAGTGCTCTC+AGG | + | chr4_1:1798911-1798930 | Msa0528820:CDS | 50.0% |
| GAGGATGGGTCCGTAGTAAT+CGG | - | chr4_1:1798973-1798992 | None:intergenic | 50.0% | |
| TTACTACGGACCCATCCTCA+TGG | + | chr4_1:1798974-1798993 | Msa0528820:CDS | 50.0% | |
| TGCTTCTCAGCCATGAGGAT+GGG | - | chr4_1:1798987-1799006 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCAGCCATG+AGG | - | chr4_1:1798992-1799011 | None:intergenic | 50.0% | |
| ! | GGTGGTGGTTGATTGGGAAG+AGG | - | chr4_1:1796128-1796147 | None:intergenic | 55.0% |
| ! | GACTCCGGTGGTGGTTGATT+GGG | - | chr4_1:1796134-1796153 | None:intergenic | 55.0% |
| ! | AGACTCCGGTGGTGGTTGAT+TGG | - | chr4_1:1796135-1796154 | None:intergenic | 55.0% |
| !! | GTTTCTGGTTCGGGAGACTC+CGG | - | chr4_1:1796149-1796168 | None:intergenic | 55.0% |
| TTCATCTTCCTCGCCTTCGG+CGG | - | chr4_1:1796174-1796193 | None:intergenic | 55.0% | |
| ! | GGAGAAGCATGCTGAAGAGC+AGG | + | chr4_1:1796388-1796407 | Msa0528820:CDS | 55.0% |
| !! | TTGTTGATTCTCGGCGGTGG+CGG | - | chr4_1:1796453-1796472 | None:intergenic | 55.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4_1:1797202-1797221 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4_1:1797199-1797218 | Msa0528820:intron | 55.0% | |
| !! | GATGGATTGGGACGAGACAC+TGG | + | chr4_1:1797337-1797356 | Msa0528820:intron | 55.0% |
| ACTCCAACTCACGGTCACTG+CGG | - | chr4_1:1797414-1797433 | None:intergenic | 55.0% | |
| ! | TTTTCGGCCTTCGTAGCCTC+CGG | - | chr4_1:1797487-1797506 | None:intergenic | 55.0% |
| GGCCGAAAACAAAGAGGAGG+AGG | + | chr4_1:1797498-1797517 | Msa0528820:CDS | 55.0% | |
| AAAGAGGAGGAGGGGGATTG+CGG | + | chr4_1:1797508-1797527 | Msa0528820:CDS | 55.0% | |
| AGACGGTTGCAGAGACACCT+TGG | + | chr4_1:1797552-1797571 | Msa0528820:CDS | 55.0% | |
| !! | GACCTCGCTGAAAAGTGCTC+TGG | + | chr4_1:1797619-1797638 | Msa0528820:CDS | 55.0% |
| !! | CCTCGCTGAAAAGTGCTCTG+GGG | + | chr4_1:1797621-1797640 | Msa0528820:CDS | 55.0% |
| GCGCTTCTCGGTCTTGATGA+TGG | - | chr4_1:1797698-1797717 | None:intergenic | 55.0% | |
| TTGCTCTTCGACGCGCTTCT+CGG | - | chr4_1:1797710-1797729 | None:intergenic | 55.0% | |
| ! | CGACCGTGAGTTGGAGTCTA+AGG | + | chr4_1:1798668-1798687 | Msa0528820:CDS | 55.0% |
| TCCTGATCAAGCAGCTGTGG+AGG | + | chr4_1:1798755-1798774 | Msa0528820:CDS | 55.0% | |
| TCCGAAAGCAGAAGGCGAAG+AGG | + | chr4_1:1798779-1798798 | Msa0528820:CDS | 55.0% | |
| GAAAGCAGAAGGCGAAGAGG+AGG | + | chr4_1:1798782-1798801 | Msa0528820:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAAGA+AGG | + | chr4_1:1798789-1798808 | Msa0528820:CDS | 55.0% | |
| GAGGAGGAAGAAGGTGAGTG+CGG | + | chr4_1:1798798-1798817 | Msa0528820:CDS | 55.0% | |
| AGGAGGAAGAAGGTGAGTGC+GGG | + | chr4_1:1798799-1798818 | Msa0528820:CDS | 55.0% | |
| GCAGAGACACCTTCGTCGAT+TGG | + | chr4_1:1798850-1798869 | Msa0528820:CDS | 55.0% | |
| GCAGTTCTCCCAATCGACGA+AGG | - | chr4_1:1798862-1798881 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGGAGAACTGCA+TGG | + | chr4_1:1798863-1798882 | Msa0528820:CDS | 55.0% |
| GTGCTTCTCAGCCATGAGGA+TGG | - | chr4_1:1798988-1799007 | None:intergenic | 55.0% | |
| ! | AGAACAAGCCGCCATCGACT+TGG | + | chr4_1:1799013-1799032 | Msa0528820:CDS | 55.0% |
| !! | GGGTTTTCCGATGGGTTCGG+CGG | - | chr4_1:1796080-1796099 | None:intergenic | 60.0% |
| !! | TTCGGCGGCGGTTTCTGGTT+CGG | - | chr4_1:1796159-1796178 | None:intergenic | 60.0% |
| GAACCGCAGTGACCGTGAGT+TGG | + | chr4_1:1797408-1797427 | Msa0528820:intron | 60.0% | |
| AAAGGAGCAACCAGCTCCGG+AGG | + | chr4_1:1797468-1797487 | Msa0528820:CDS | 60.0% | |
| AAGAGGAGGAGGGGGATTGC+GGG | + | chr4_1:1797509-1797528 | Msa0528820:CDS | 60.0% | |
| !! | CCCCAGAGCACTTTTCAGCG+AGG | - | chr4_1:1797624-1797643 | None:intergenic | 60.0% |
| GCCTCCACAGCTGCTTGATC+AGG | - | chr4_1:1798759-1798778 | None:intergenic | 60.0% | |
| GTGGAGGCTCCGAAAGCAGA+AGG | + | chr4_1:1798771-1798790 | Msa0528820:CDS | 60.0% | |
| !! | TCTGGTTCGGGAGACTCCGG+TGG | - | chr4_1:1796146-1796165 | None:intergenic | 65.0% |
| !! | TCGGCGGCGGTTTCTGGTTC+GGG | - | chr4_1:1796158-1796177 | None:intergenic | 65.0% |
| GAACCAGAAACCGCCGCCGA+AGG | + | chr4_1:1796158-1796177 | Msa0528820:CDS | 65.0% | |
| ATCTTCCTCGCCTTCGGCGG+CGG | - | chr4_1:1796171-1796190 | None:intergenic | 65.0% | |
| ! | TTGATTCTCGGCGGTGGCGG+CGG | - | chr4_1:1796450-1796469 | None:intergenic | 65.0% |
| ACCAGCTCCGGAGGCTACGA+AGG | + | chr4_1:1797477-1797496 | Msa0528820:CDS | 65.0% | |
| GGACTGCAGCGACCGTGAGT+TGG | + | chr4_1:1798659-1798678 | Msa0528820:intron | 65.0% | |
| GTCGACGCCGCCGAACCCAT+CGG | + | chr4_1:1796070-1796089 | Msa0528820:CDS | 70.0% | |
| GGTTCGGGAGACTCCGGTGG+TGG | - | chr4_1:1796143-1796162 | None:intergenic | 70.0% | |
| TCGCCTTCGGCGGCGGTTTC+TGG | - | chr4_1:1796164-1796183 | None:intergenic | 70.0% | |
| AGAAACCGCCGCCGAAGGCG+AGG | + | chr4_1:1796163-1796182 | Msa0528820:CDS | 70.0% | |
| GCCTTCGTAGCCTCCGGAGC+TGG | - | chr4_1:1797481-1797500 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 1796002 | 1799262 | 1796002 | ID=Msa0528820;Name=Msa0528820 |
| chr4_1 | mRNA | 1796002 | 1799262 | 1796002 | ID=Msa0528820-mRNA-1;Parent=Msa0528820;Name=Msa0528820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|3|189|388 |
| chr4_1 | exon | 1796002 | 1796492 | 1796002 | ID=Msa0528820-mRNA-1:exon:542;Parent=Msa0528820-mRNA-1 |
| chr4_1 | exon | 1797417 | 1797752 | 1797417 | ID=Msa0528820-mRNA-1:exon:543;Parent=Msa0528820-mRNA-1 |
| chr4_1 | exon | 1798668 | 1799262 | 1798668 | ID=Msa0528820-mRNA-1:exon:544;Parent=Msa0528820-mRNA-1 |
| chr4_1 | five_prime_UTR | 1796002 | 1796067 | 1796002 | ID=Msa0528820-mRNA-1:five_prime_utr;Parent=Msa0528820-mRNA-1 |
| chr4_1 | CDS | 1796068 | 1796492 | 1796068 | ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1 |
| chr4_1 | CDS | 1797417 | 1797752 | 1797417 | ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1 |
| chr4_1 | CDS | 1798668 | 1799073 | 1798668 | ID=Msa0528820-mRNA-1:cds;Parent=Msa0528820-mRNA-1 |
| chr4_1 | three_prime_UTR | 1799074 | 1799262 | 1799074 | ID=Msa0528820-mRNA-1:three_prime_utr;Parent=Msa0528820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
