Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002430 | Msa0071760 | 0.820894 | 5.389151e-53 | -8.615850e-47 |
| Msa0002430 | Msa0136400 | 0.824471 | 7.929609e-54 | -8.615850e-47 |
| Msa0002430 | Msa0235050 | 0.824398 | 8.249684e-54 | -8.615850e-47 |
| Msa0002430 | Msa0281330 | 0.815531 | 8.813783e-52 | -8.615850e-47 |
| Msa0002430 | Msa0281370 | 0.800863 | 1.180171e-48 | -8.615850e-47 |
| Msa0002430 | Msa0337750 | 0.805097 | 1.573849e-49 | -8.615850e-47 |
| Msa0002430 | Msa0363320 | 0.801916 | 7.182709e-49 | -8.615850e-47 |
| Msa0002430 | Msa0377370 | 0.800464 | 1.423578e-48 | -8.615850e-47 |
| Msa0002430 | Msa0382960 | 0.807573 | 4.732854e-50 | -8.615850e-47 |
| Msa0002430 | Msa0383690 | 0.813165 | 2.938713e-51 | -8.615850e-47 |
| Msa0002430 | Msa0528750 | 0.817025 | 4.084901e-52 | -8.615850e-47 |
| Msa0002430 | Msa0528820 | 0.808964 | 2.390748e-50 | -8.615850e-47 |
| Msa0002430 | Msa0547920 | 0.809830 | 1.558921e-50 | -8.615850e-47 |
| Msa0002430 | Msa0550490 | 0.839176 | 1.852880e-57 | -8.615850e-47 |
| Msa0002430 | Msa0554210 | 0.808264 | 3.373850e-50 | -8.615850e-47 |
| Msa0002430 | Msa0602900 | 0.805414 | 1.350498e-49 | -8.615850e-47 |
| Msa0002430 | Msa0605890 | 0.821344 | 4.245458e-53 | -8.615850e-47 |
| Msa0002430 | Msa0643960 | 0.811700 | 6.141003e-51 | -8.615850e-47 |
| Msa0002430 | Msa0650370 | 0.814897 | 1.218898e-51 | -8.615850e-47 |
| Msa0002430 | Msa1116940 | 0.832961 | 7.010579e-56 | -8.615850e-47 |
| Msa0002430 | Msa1136880 | 0.832812 | 7.633988e-56 | -8.615850e-47 |
| Msa0002430 | Msa1207200 | 0.909973 | 3.147590e-82 | -8.615850e-47 |
| Msa0002430 | Msa1211820 | 0.846622 | 1.934688e-59 | -8.615850e-47 |
| Msa0002430 | Msa1235950 | 0.826643 | 2.423589e-54 | -8.615850e-47 |
| Msa0002430 | Msa1235980 | 0.820010 | 8.597761e-53 | -8.615850e-47 |
| Msa0002430 | Msa1257450 | 0.946955 | 1.712720e-105 | -8.615850e-47 |
| Msa0002430 | Msa1299690 | 0.817243 | 3.648797e-52 | -8.615850e-47 |
| Msa0002430 | Msa1305260 | 0.920721 | 8.937074e-88 | -8.615850e-47 |
| Msa0002430 | Msa1316100 | 0.814787 | 1.289689e-51 | -8.615850e-47 |
| Msa0002430 | Msa1332230 | 0.860276 | 2.312527e-63 | -8.615850e-47 |
| Msa0002430 | Msa1344160 | 0.832167 | 1.103013e-55 | -8.615850e-47 |
| Msa0002430 | Msa1344190 | 0.832545 | 8.892286e-56 | -8.615850e-47 |
| Msa0002430 | Msa1425070 | 0.801977 | 6.980180e-49 | -8.615850e-47 |
| Msa0002430 | Msa1433590 | 0.854285 | 1.363159e-61 | -8.615850e-47 |
| Msa0002430 | Msa1456160 | 0.815936 | 7.158542e-52 | -8.615850e-47 |
| Msa0002430 | Msa1465700 | 0.811105 | 8.266527e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002430 | MtrunA17_Chr4g0056071 | 96.104 | 77 | 3 | 0 | 1 | 77 | 1 | 77 | 3.38e-45 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002430 | AT4G17310.2 | 45.361 | 97 | 48 | 2 | 1 | 92 | 1 | 97 | 9.00e-14 | 62.4 |
| Msa0002430 | AT4G17310.15 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.22e-13 | 62.0 |
| Msa0002430 | AT4G17310.16 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.45e-13 | 62.0 |
| Msa0002430 | AT4G17310.7 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.45e-13 | 62.0 |
| Msa0002430 | AT4G17310.14 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.45e-13 | 62.0 |
| Msa0002430 | AT4G17310.8 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.45e-13 | 62.0 |
| Msa0002430 | AT4G17310.10 | 48.810 | 84 | 30 | 3 | 1 | 77 | 1 | 78 | 1.45e-13 | 62.0 |
| Msa0002430 | AT4G17310.11 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.13 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.1 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.6 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.12 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.9 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.5 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.17 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.4 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
| Msa0002430 | AT4G17310.3 | 51.282 | 78 | 37 | 1 | 1 | 77 | 1 | 78 | 1.77e-13 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAGTGGTGGTTGGTTT+GGG | 0.163477 | 1_1:-4317663 | None:intergenic |
| CAGCAAGTATAACCACTTTC+TGG | 0.185526 | 1_1:-4320705 | None:intergenic |
| TCCAAGCTCCGGCGCAATTC+TGG | 0.241996 | 1_1:-4317715 | None:intergenic |
| TATGAATAAATATATCAATT+AGG | 0.243988 | 1_1:-4320781 | None:intergenic |
| TGTGGCAGTGGTGGTTGGTT+TGG | 0.246581 | 1_1:-4317664 | None:intergenic |
| GTAATCTATTCAGAAATATT+AGG | 0.253958 | 1_1:+4318900 | Msa0002430:intron |
| AAGTTTGTAAGCTGGATTTA+TGG | 0.256250 | 1_1:+4320664 | Msa0002430:exon |
| ATCCAGCTTACAAACTTAAA+AGG | 0.261444 | 1_1:-4320658 | None:intergenic |
| ATGAATAAATATATCAATTA+GGG | 0.347975 | 1_1:-4320780 | None:intergenic |
| GGTTGGTTTGGGGATGGATG+AGG | 0.393701 | 1_1:-4317652 | None:intergenic |
| GGATTTAATTGCGGATTTGA+TGG | 0.409263 | 1_1:-4317619 | None:intergenic |
| AGTGGTGGTTGGTTTGGGGA+TGG | 0.417037 | 1_1:-4317658 | None:intergenic |
| AGCAAGTATAACCACTTTCT+GGG | 0.418258 | 1_1:-4320704 | None:intergenic |
| AAGAAATCATAAGCATAATC+TGG | 0.422829 | 1_1:+4320908 | Msa0002430:three_prime_UTR |
| TCCAGAATTGCGCCGGAGCT+TGG | 0.422852 | 1_1:+4317714 | Msa0002430:CDS |
| GATGGATGAGGTGCGAATGT+TGG | 0.451724 | 1_1:-4317640 | None:intergenic |
| GACTGCACGCATCCAAGCTC+CGG | 0.453744 | 1_1:-4317726 | None:intergenic |
| AATTGATATATTTATTCATA+CGG | 0.472007 | 1_1:+4320784 | Msa0002430:three_prime_UTR |
| TGGCAGTGGTGGTTGGTTTG+GGG | 0.472598 | 1_1:-4317662 | None:intergenic |
| GCCGCAACTGCGCTGTGAAG+TGG | 0.483273 | 1_1:-4317756 | None:intergenic |
| TGGTTAGATGATTAGTTCAA+AGG | 0.492232 | 1_1:+4320928 | Msa0002430:three_prime_UTR |
| GGTTAGATGATTAGTTCAAA+GGG | 0.495301 | 1_1:+4320929 | Msa0002430:three_prime_UTR |
| ATTTATGGTCTTTGTTACAT+TGG | 0.498919 | 1_1:+4320679 | Msa0002430:three_prime_UTR |
| GAAGATGTGGCAGTGGTGGT+TGG | 0.504244 | 1_1:-4317669 | None:intergenic |
| GCCACTTCACAGCGCAGTTG+CGG | 0.509854 | 1_1:+4317755 | Msa0002430:CDS |
| AGATGATTAGTTCAAAGGGA+GGG | 0.543652 | 1_1:+4320933 | Msa0002430:three_prime_UTR |
| TTTCTTCTAGCAAGTCACCT+TGG | 0.551535 | 1_1:-4320623 | None:intergenic |
| TTACATTGGTGCCCAGAAAG+TGG | 0.557496 | 1_1:+4320693 | Msa0002430:three_prime_UTR |
| ATTTGCATCCAGAATTGCGC+CGG | 0.566247 | 1_1:+4317707 | Msa0002430:CDS |
| GCGAATGTTGGATTTAATTG+CGG | 0.569994 | 1_1:-4317628 | None:intergenic |
| TGGAGAAGATGTGGCAGTGG+TGG | 0.576473 | 1_1:-4317673 | None:intergenic |
| CAATTCTGGATGCAAATGAT+CGG | 0.592552 | 1_1:-4317701 | None:intergenic |
| ACATAGTTCACGTTTGTAGT+CGG | 0.600853 | 1_1:-4320826 | None:intergenic |
| TAGATGATTAGTTCAAAGGG+AGG | 0.605486 | 1_1:+4320932 | Msa0002430:three_prime_UTR |
| GATTAACTTATAAGAACTAG+AGG | 0.609972 | 1_1:-4320885 | None:intergenic |
| AGCTTGGTCTATCAGTTCCA+AGG | 0.611426 | 1_1:+4320606 | Msa0002430:CDS |
| TAGTCACACACGTTTGTAGA+CGG | 0.615341 | 1_1:-4320851 | None:intergenic |
| GATGCAAATGATCGGCGAAG+TGG | 0.621136 | 1_1:-4317693 | None:intergenic |
| ACTTCACAGCGCAGTTGCGG+CGG | 0.632388 | 1_1:+4317758 | Msa0002430:CDS |
| TCGGCGAAGTGGAGAAGATG+TGG | 0.637549 | 1_1:-4317682 | None:intergenic |
| AAGTGGAGAAGATGTGGCAG+TGG | 0.639588 | 1_1:-4317676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTACAACAAAAAAAAA+AGG | + | chr1_1:4318179-4318198 | Msa0002430:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | + | chr1_1:4319119-4319138 | Msa0002430:intron | 10.0% |
| !!! | AAAAGCTTTATATAATAATA+TGG | - | chr1_1:4319811-4319830 | None:intergenic | 10.0% |
| !! | ATGAATAAATATATCAATTA+GGG | - | chr1_1:4320783-4320802 | None:intergenic | 10.0% |
| !! | TATGAATAAATATATCAATT+AGG | - | chr1_1:4320784-4320803 | None:intergenic | 10.0% |
| !! | AATTGATATATTTATTCATA+CGG | + | chr1_1:4320784-4320803 | Msa0002430:three_prime_UTR | 10.0% |
| !! | ATATTTAATTGCAATTGAAT+TGG | + | chr1_1:4318026-4318045 | Msa0002430:intron | 15.0% |
| !! | GAAAAAATAAAATTATTTGG+CGG | + | chr1_1:4318725-4318744 | Msa0002430:intron | 15.0% |
| !!! | ATGTGATTTTCTAAAATTTT+TGG | + | chr1_1:4319689-4319708 | Msa0002430:intron | 15.0% |
| !! | AAGAAAATTTGTGAATATTT+CGG | - | chr1_1:4319781-4319800 | None:intergenic | 15.0% |
| !! | AATTTAGACGTAATAAAACA+TGG | + | chr1_1:4318209-4318228 | Msa0002430:intron | 20.0% |
| !! | ATTTAGACGTAATAAAACAT+GGG | + | chr1_1:4318210-4318229 | Msa0002430:intron | 20.0% |
| !! | GGGGAAAAAATAAAATTATT+TGG | + | chr1_1:4318722-4318741 | Msa0002430:intron | 20.0% |
| !! | GTAATCTATTCAGAAATATT+AGG | + | chr1_1:4318900-4318919 | Msa0002430:intron | 20.0% |
| !!! | TTTTGTTTGAGAAATGAAAA+GGG | + | chr1_1:4319027-4319046 | Msa0002430:intron | 20.0% |
| !!! | AATCAATTTTATTTCCCTTA+GGG | - | chr1_1:4319314-4319333 | None:intergenic | 20.0% |
| !!! | TAATCAATTTTATTTCCCTT+AGG | - | chr1_1:4319315-4319334 | None:intergenic | 20.0% |
| !! | TTGTTCTTACTTAGTAAAAA+GGG | - | chr1_1:4320196-4320215 | None:intergenic | 20.0% |
| !! | ATTGTTCTTACTTAGTAAAA+AGG | - | chr1_1:4320197-4320216 | None:intergenic | 20.0% |
| !!! | TATGAACTTGTCTAAATTTT+TGG | + | chr1_1:4320498-4320517 | Msa0002430:intron | 20.0% |
| !!! | TGTTTTATTTAGGTTTTCTA+CGG | + | chr1_1:4320543-4320562 | Msa0002430:intron | 20.0% |
| ! | AAAAAGAAAACATTAGAGTC+CGG | - | chr1_1:4317862-4317881 | None:intergenic | 25.0% |
| !!! | TGAAAAGTTGATTTTGAATG+CGG | - | chr1_1:4317960-4317979 | None:intergenic | 25.0% |
| ! | TAAAAAAACTAATGCTACGA+GGG | - | chr1_1:4318303-4318322 | None:intergenic | 25.0% |
| ! | ATAAAAAAACTAATGCTACG+AGG | - | chr1_1:4318304-4318323 | None:intergenic | 25.0% |
| !!! | ATACTTGATAATGAAGAAGA+AGG | - | chr1_1:4318840-4318859 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTGAGAAATGAAA+AGG | + | chr1_1:4319026-4319045 | Msa0002430:intron | 25.0% |
| ! | GAGAAACTTTAATTCTCTTA+GGG | + | chr1_1:4319052-4319071 | Msa0002430:intron | 25.0% |
| ! | ACAGAAAAAAGTAGAAAAAG+TGG | + | chr1_1:4319380-4319399 | Msa0002430:intron | 25.0% |
| ! | CAGAAAAAAGTAGAAAAAGT+GGG | + | chr1_1:4319381-4319400 | Msa0002430:intron | 25.0% |
| ! | AAAAATTCACAATGCATCTA+GGG | - | chr1_1:4319462-4319481 | None:intergenic | 25.0% |
| !!! | AATTACTTAGAGCCATTTTT+GGG | - | chr1_1:4319515-4319534 | None:intergenic | 25.0% |
| !!! | TAATTACTTAGAGCCATTTT+TGG | - | chr1_1:4319516-4319535 | None:intergenic | 25.0% |
| ! | GTTATGCAAAACAAAATGTA+TGG | - | chr1_1:4319581-4319600 | None:intergenic | 25.0% |
| ! | AATTCAGTGTAATTATGTGT+CGG | - | chr1_1:4319669-4319688 | None:intergenic | 25.0% |
| ! | TCTACCTAATGTAAACAAAT+GGG | + | chr1_1:4319868-4319887 | Msa0002430:intron | 25.0% |
| ! | ACTTGATATAATCTATCACA+TGG | + | chr1_1:4319955-4319974 | Msa0002430:intron | 25.0% |
| ! | ATTGAGTACAAACTATGAAA+CGG | - | chr1_1:4320341-4320360 | None:intergenic | 25.0% |
| ! | CTTAAGAGAAACATATGTTA+TGG | - | chr1_1:4320375-4320394 | None:intergenic | 25.0% |
| !!! | CTCTAGAACAAATAAAACAA+AGG | - | chr1_1:4320588-4320607 | None:intergenic | 25.0% |
| ! | ATTTATGGTCTTTGTTACAT+TGG | + | chr1_1:4320679-4320698 | Msa0002430:three_prime_UTR | 25.0% |
| !!! | ATACTTGCTGTAATTTTTTC+AGG | + | chr1_1:4320718-4320737 | Msa0002430:three_prime_UTR | 25.0% |
| ! | GATTAACTTATAAGAACTAG+AGG | - | chr1_1:4320888-4320907 | None:intergenic | 25.0% |
| ! | AAGAAATCATAAGCATAATC+TGG | + | chr1_1:4320908-4320927 | Msa0002430:three_prime_UTR | 25.0% |
| !!! | AATTTTGACTCCATCAAAAA+TGG | - | chr1_1:4320994-4321013 | None:intergenic | 25.0% |
| AAAAGAAAACATTAGAGTCC+GGG | - | chr1_1:4317861-4317880 | None:intergenic | 30.0% | |
| AACGTTGCAATAACTTAACA+AGG | - | chr1_1:4318082-4318101 | None:intergenic | 30.0% | |
| !!! | TATTGCAACGTTTGTTTTAC+TGG | + | chr1_1:4318090-4318109 | Msa0002430:intron | 30.0% |
| GGAAGTTATTGTATACACTT+GGG | + | chr1_1:4318249-4318268 | Msa0002430:intron | 30.0% | |
| CTACTATAATAAGTGCTTGT+GGG | - | chr1_1:4318487-4318506 | None:intergenic | 30.0% | |
| TCTACTATAATAAGTGCTTG+TGG | - | chr1_1:4318488-4318507 | None:intergenic | 30.0% | |
| TCAATCAATAGAGTTTCCAT+TGG | - | chr1_1:4318612-4318631 | None:intergenic | 30.0% | |
| GAAAGACTAACTGGAAAATT+TGG | + | chr1_1:4318763-4318782 | Msa0002430:intron | 30.0% | |
| ! | TTTTCTTCAGGTAACAGAAA+AGG | - | chr1_1:4318936-4318955 | None:intergenic | 30.0% |
| ! | ACCTGAAGAAAAAGTTCTTT+TGG | + | chr1_1:4318944-4318963 | Msa0002430:CDS | 30.0% |
| ! | TGAAGAAAAAGTTCTTTTGG+CGG | + | chr1_1:4318947-4318966 | Msa0002430:CDS | 30.0% |
| TCTACAGATTTCCAAATAAC+TGG | - | chr1_1:4318978-4318997 | None:intergenic | 30.0% | |
| ! | GAAATCTGTAGATTTTCCAT+AGG | + | chr1_1:4318986-4319005 | Msa0002430:intron | 30.0% |
| GGAGAAACTTTAATTCTCTT+AGG | + | chr1_1:4319051-4319070 | Msa0002430:intron | 30.0% | |
| TCAGAGTTAATCACAACATA+AGG | - | chr1_1:4319355-4319374 | None:intergenic | 30.0% | |
| ! | TGCATTATAGGGTTTGAAAT+GGG | - | chr1_1:4319421-4319440 | None:intergenic | 30.0% |
| CAAAAATTCACAATGCATCT+AGG | - | chr1_1:4319463-4319482 | None:intergenic | 30.0% | |
| TCTTTAGTGTTTCCCAAAAA+TGG | + | chr1_1:4319500-4319519 | Msa0002430:intron | 30.0% | |
| !!! | TCTAAAATTTTTGGCTGTGT+CGG | + | chr1_1:4319698-4319717 | Msa0002430:intron | 30.0% |
| CTCTACCTAATGTAAACAAA+TGG | + | chr1_1:4319867-4319886 | Msa0002430:intron | 30.0% | |
| !! | AACACAAGTTTGTTTTCTGT+TGG | + | chr1_1:4319918-4319937 | Msa0002430:intron | 30.0% |
| ACTGAAAAAACACCTTTAGT+CGG | + | chr1_1:4319987-4320006 | Msa0002430:intron | 30.0% | |
| ! | TGGTATAGAATTTTCTCCAA+AGG | + | chr1_1:4320023-4320042 | Msa0002430:intron | 30.0% |
| TCTTTCACAATATATCCAAC+AGG | - | chr1_1:4320053-4320072 | None:intergenic | 30.0% | |
| !! | ACAAAACAAAAGCTTTGAAG+TGG | + | chr1_1:4320072-4320091 | Msa0002430:intron | 30.0% |
| TATGTAGGGAAATTGAAACT+AGG | + | chr1_1:4320095-4320114 | Msa0002430:intron | 30.0% | |
| CTTGATTTACAACAACATAC+TGG | + | chr1_1:4320121-4320140 | Msa0002430:intron | 30.0% | |
| TTTCACCAGATACAATTGAT+GGG | + | chr1_1:4320236-4320255 | Msa0002430:intron | 30.0% | |
| !!! | ATTTTTGGTTCTTCAGTCTT+TGG | + | chr1_1:4320513-4320532 | Msa0002430:intron | 30.0% |
| !!! | TGGCTCTTTGTGTTTTATTT+AGG | + | chr1_1:4320533-4320552 | Msa0002430:intron | 30.0% |
| !!! | GTTTTATTTGTTCTAGAGCT+TGG | + | chr1_1:4320590-4320609 | Msa0002430:intron | 30.0% |
| ATCCAGCTTACAAACTTAAA+AGG | - | chr1_1:4320661-4320680 | None:intergenic | 30.0% | |
| AAGTTTGTAAGCTGGATTTA+TGG | + | chr1_1:4320664-4320683 | Msa0002430:exon | 30.0% | |
| ! | TGGTTAGATGATTAGTTCAA+AGG | + | chr1_1:4320928-4320947 | Msa0002430:three_prime_UTR | 30.0% |
| ! | GGTTAGATGATTAGTTCAAA+GGG | + | chr1_1:4320929-4320948 | Msa0002430:three_prime_UTR | 30.0% |
| !! | ATGTTCGATTCCATTTTTGA+TGG | + | chr1_1:4320981-4321000 | Msa0002430:three_prime_UTR | 30.0% |
| GGATTTAATTGCGGATTTGA+TGG | - | chr1_1:4317622-4317641 | None:intergenic | 35.0% | |
| GCGAATGTTGGATTTAATTG+CGG | - | chr1_1:4317631-4317650 | None:intergenic | 35.0% | |
| CAATTCTGGATGCAAATGAT+CGG | - | chr1_1:4317704-4317723 | None:intergenic | 35.0% | |
| GGGAAGTTATTGTATACACT+TGG | + | chr1_1:4318248-4318267 | Msa0002430:intron | 35.0% | |
| ! | GCTGCTCTAATAAGCTATTT+TGG | + | chr1_1:4318400-4318419 | Msa0002430:intron | 35.0% |
| GTACAAAGTGAAAGACTAAC+TGG | + | chr1_1:4318754-4318773 | Msa0002430:intron | 35.0% | |
| ! | CATAGTTAATTGGGAGTATG+CGG | + | chr1_1:4318798-4318817 | Msa0002430:intron | 35.0% |
| ! | ATAGTTAATTGGGAGTATGC+GGG | + | chr1_1:4318799-4318818 | Msa0002430:intron | 35.0% |
| ATGAAGAAGAAGGCCTTAAT+TGG | - | chr1_1:4318830-4318849 | None:intergenic | 35.0% | |
| !! | GCCAAAAGAACTTTTTCTTC+AGG | - | chr1_1:4318948-4318967 | None:intergenic | 35.0% |
| ! | GTAGATTTTCCATAGGATAG+CGG | + | chr1_1:4318993-4319012 | Msa0002430:intron | 35.0% |
| ! | TAGATTTTCCATAGGATAGC+GGG | + | chr1_1:4318994-4319013 | Msa0002430:intron | 35.0% |
| TGTTTGAGAAATGAAAAGGG+AGG | + | chr1_1:4319030-4319049 | Msa0002430:intron | 35.0% | |
| TAATTCTCTTAGGGTGTGTT+TGG | + | chr1_1:4319061-4319080 | Msa0002430:intron | 35.0% | |
| CTGCATTATAGGGTTTGAAA+TGG | - | chr1_1:4319422-4319441 | None:intergenic | 35.0% | |
| TTGGGTCTTACTGCATTATA+GGG | - | chr1_1:4319432-4319451 | None:intergenic | 35.0% | |
| ACTAAAGAAGAGCAGGTATA+TGG | - | chr1_1:4319488-4319507 | None:intergenic | 35.0% | |
| TTTGCATAACCTATGAAGCA+CGG | + | chr1_1:4319591-4319610 | Msa0002430:intron | 35.0% | |
| TAGTTATGCACTATGAAGCA+CGG | - | chr1_1:4319740-4319759 | None:intergenic | 35.0% | |
| TTCATAGTGCATAACTAGTC+TGG | + | chr1_1:4319743-4319762 | Msa0002430:intron | 35.0% | |
| ! | CTTTTGCTAGTGAGTTCAAT+TGG | + | chr1_1:4319826-4319845 | Msa0002430:intron | 35.0% |
| GTCACCCATTTGTTTACATT+AGG | - | chr1_1:4319875-4319894 | None:intergenic | 35.0% | |
| ATATCCAACAGGAAAACCTT+TGG | - | chr1_1:4320042-4320061 | None:intergenic | 35.0% | |
| !! | AAAGCTTTGAAGTGGTATGT+AGG | + | chr1_1:4320080-4320099 | Msa0002430:intron | 35.0% |
| !! | AAGCTTTGAAGTGGTATGTA+GGG | + | chr1_1:4320081-4320100 | Msa0002430:intron | 35.0% |
| CTTTCACCAGATACAATTGA+TGG | + | chr1_1:4320235-4320254 | Msa0002430:intron | 35.0% | |
| TCTTAAGCAAACTGTATGAC+TGG | + | chr1_1:4320388-4320407 | Msa0002430:intron | 35.0% | |
| !!! | AGCCTTTTAAGTTTGTAAGC+TGG | + | chr1_1:4320656-4320675 | Msa0002430:exon | 35.0% |
| AGCAAGTATAACCACTTTCT+GGG | - | chr1_1:4320707-4320726 | None:intergenic | 35.0% | |
| ACATAGTTCACGTTTGTAGT+CGG | - | chr1_1:4320829-4320848 | None:intergenic | 35.0% | |
| ! | TAGATGATTAGTTCAAAGGG+AGG | + | chr1_1:4320932-4320951 | Msa0002430:three_prime_UTR | 35.0% |
| ! | AGATGATTAGTTCAAAGGGA+GGG | + | chr1_1:4320933-4320952 | Msa0002430:three_prime_UTR | 35.0% |
| AACTGTCAATCGCTTTCACA+GGG | + | chr1_1:4317816-4317835 | Msa0002430:intron | 40.0% | |
| ACATGGGTGTAATGAAGATG+TGG | + | chr1_1:4318226-4318245 | Msa0002430:intron | 40.0% | |
| CATGGGTGTAATGAAGATGT+GGG | + | chr1_1:4318227-4318246 | Msa0002430:intron | 40.0% | |
| ATGGGTGTAATGAAGATGTG+GGG | + | chr1_1:4318228-4318247 | Msa0002430:intron | 40.0% | |
| AAGTGCTTGTGGGACTATTT+GGG | - | chr1_1:4318477-4318496 | None:intergenic | 40.0% | |
| TAAGTGCTTGTGGGACTATT+TGG | - | chr1_1:4318478-4318497 | None:intergenic | 40.0% | |
| TGGTAAAGTCTACAGGTGAA+AGG | - | chr1_1:4318587-4318606 | None:intergenic | 40.0% | |
| !! | ATTGGCTTGGTAAAGTCTAC+AGG | - | chr1_1:4318594-4318613 | None:intergenic | 40.0% |
| TGTAGACTTTACCAAGCCAA+TGG | + | chr1_1:4318593-4318612 | Msa0002430:intron | 40.0% | |
| ! | CAATAGAGTTTCCATTGGCT+TGG | - | chr1_1:4318607-4318626 | None:intergenic | 40.0% |
| !! | CTTTGGTCTTGTTGTCTCTT+CGG | + | chr1_1:4318669-4318688 | Msa0002430:intron | 40.0% |
| !! | TTTGGTCTTGTTGTCTCTTC+GGG | + | chr1_1:4318670-4318689 | Msa0002430:intron | 40.0% |
| CTGCAGGCACATAGTTAATT+GGG | + | chr1_1:4318789-4318808 | Msa0002430:intron | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr1_1:4319069-4319088 | Msa0002430:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr1_1:4319075-4319094 | Msa0002430:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr1_1:4319079-4319098 | Msa0002430:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr1_1:4319075-4319094 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr1_1:4319069-4319088 | None:intergenic | 40.0% | |
| TCAATCCAAACACACCCTAA+GGG | + | chr1_1:4319297-4319316 | Msa0002430:intron | 40.0% | |
| TATTTCCCTTAGGGTGTGTT+TGG | - | chr1_1:4319305-4319324 | None:intergenic | 40.0% | |
| GTTGGGTCTTACTGCATTAT+AGG | - | chr1_1:4319433-4319452 | None:intergenic | 40.0% | |
| ! | GTGTAATTATGTGTCGGTGT+CGG | - | chr1_1:4319663-4319682 | None:intergenic | 40.0% |
| ACACTCAAAGTTCCGACTAA+AGG | - | chr1_1:4320002-4320021 | None:intergenic | 40.0% | |
| TAGTCGGAACTTTGAGTGTA+TGG | + | chr1_1:4320003-4320022 | Msa0002430:intron | 40.0% | |
| ! | TTCTCCAAAGGTTTTCCTGT+TGG | + | chr1_1:4320035-4320054 | Msa0002430:intron | 40.0% |
| AGACATGCATGCTGTTCATA+AGG | + | chr1_1:4320264-4320283 | Msa0002430:intron | 40.0% | |
| ATGCATGCTGTTCATAAGGT+GGG | + | chr1_1:4320268-4320287 | Msa0002430:intron | 40.0% | |
| CAAACTATGAAACGGTCGTT+AGG | - | chr1_1:4320333-4320352 | None:intergenic | 40.0% | |
| TGCAGTGATGCTATCATACA+AGG | - | chr1_1:4320467-4320486 | None:intergenic | 40.0% | |
| TTTCTTCTAGCAAGTCACCT+TGG | - | chr1_1:4320626-4320645 | None:intergenic | 40.0% | |
| CAGCAAGTATAACCACTTTC+TGG | - | chr1_1:4320708-4320727 | None:intergenic | 40.0% | |
| TAGTCACACACGTTTGTAGA+CGG | - | chr1_1:4320854-4320873 | None:intergenic | 40.0% | |
| ATTTGCATCCAGAATTGCGC+CGG | + | chr1_1:4317707-4317726 | Msa0002430:CDS | 45.0% | |
| GAACTGTCAATCGCTTTCAC+AGG | + | chr1_1:4317815-4317834 | Msa0002430:intron | 45.0% | |
| AAAACATTAGAGTCCGGGAG+AGG | - | chr1_1:4317856-4317875 | None:intergenic | 45.0% | |
| GTATACACTTGGGTCTGACT+TGG | + | chr1_1:4318259-4318278 | Msa0002430:intron | 45.0% | |
| TCATAGACCCTAGATCCATG+CGG | + | chr1_1:4318513-4318532 | Msa0002430:intron | 45.0% | |
| AGAGACAACAAGACCAAAGG+AGG | - | chr1_1:4318668-4318687 | None:intergenic | 45.0% | |
| CGAAGAGACAACAAGACCAA+AGG | - | chr1_1:4318671-4318690 | None:intergenic | 45.0% | |
| ! | TGTTGTCTCTTCGGGTTTCT+AGG | + | chr1_1:4318678-4318697 | Msa0002430:intron | 45.0% |
| !!! | CACGTGTAGGTTGGTTTTGT+GGG | + | chr1_1:4318701-4318720 | Msa0002430:intron | 45.0% |
| !!! | ACGTGTAGGTTGGTTTTGTG+GGG | + | chr1_1:4318702-4318721 | Msa0002430:intron | 45.0% |
| ! | CTGGAAAATTTGGTTCCTGC+AGG | + | chr1_1:4318773-4318792 | Msa0002430:intron | 45.0% |
| CCAATTAACTATGTGCCTGC+AGG | - | chr1_1:4318791-4318810 | None:intergenic | 45.0% | |
| CCTGCAGGCACATAGTTAAT+TGG | + | chr1_1:4318788-4318807 | Msa0002430:intron | 45.0% | |
| AGAAGAAGGCCTTAATTGGC+TGG | - | chr1_1:4318826-4318845 | None:intergenic | 45.0% | |
| ATAGAGAACCCGCTATCCTA+TGG | - | chr1_1:4319005-4319024 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATTG+AGG | + | chr1_1:4319068-4319087 | Msa0002430:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr1_1:4319078-4319097 | Msa0002430:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr1_1:4319080-4319099 | Msa0002430:intron | 45.0% | |
| TTGAGGGTTTAGGAGGAGAA+AGG | - | chr1_1:4319281-4319300 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr1_1:4319078-4319097 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATTG+AGG | - | chr1_1:4319068-4319087 | None:intergenic | 45.0% | |
| CTCAATCCAAACACACCCTA+AGG | + | chr1_1:4319296-4319315 | Msa0002430:intron | 45.0% | |
| !! | TGCATCTAGGGTTAGCTGTT+GGG | - | chr1_1:4319450-4319469 | None:intergenic | 45.0% |
| !! | ATGCATCTAGGGTTAGCTGT+TGG | - | chr1_1:4319451-4319470 | None:intergenic | 45.0% |
| GGGAAACACTAAAGAAGAGC+AGG | - | chr1_1:4319495-4319514 | None:intergenic | 45.0% | |
| TATGAAGCACGGACACTTCT+CGG | + | chr1_1:4319602-4319621 | Msa0002430:intron | 45.0% | |
| ! | GCATAACTAGTCTGGCATGA+TGG | + | chr1_1:4319751-4319770 | Msa0002430:intron | 45.0% |
| CACGTCCCATCAATTGTATC+TGG | - | chr1_1:4320244-4320263 | None:intergenic | 45.0% | |
| CATGCATGCTGTTCATAAGG+TGG | + | chr1_1:4320267-4320286 | Msa0002430:intron | 45.0% | |
| TTCTCGAACAGGTCTTCAGA+GGG | - | chr1_1:4320308-4320327 | None:intergenic | 45.0% | |
| TTTCTCGAACAGGTCTTCAG+AGG | - | chr1_1:4320309-4320328 | None:intergenic | 45.0% | |
| GTCGTTAGGATTTCTCGAAC+AGG | - | chr1_1:4320319-4320338 | None:intergenic | 45.0% | |
| AGCTTGGTCTATCAGTTCCA+AGG | + | chr1_1:4320606-4320625 | Msa0002430:CDS | 45.0% | |
| ! | TTACATTGGTGCCCAGAAAG+TGG | + | chr1_1:4320693-4320712 | Msa0002430:three_prime_UTR | 45.0% |
| GATGGATGAGGTGCGAATGT+TGG | - | chr1_1:4317643-4317662 | None:intergenic | 50.0% | |
| AAGTGGAGAAGATGTGGCAG+TGG | - | chr1_1:4317679-4317698 | None:intergenic | 50.0% | |
| GATGCAAATGATCGGCGAAG+TGG | - | chr1_1:4317696-4317715 | None:intergenic | 50.0% | |
| ! | TCTACTAACTAAGCGCCGCA+TGG | - | chr1_1:4318531-4318550 | None:intergenic | 50.0% |
| AACAAGACCAAAGGAGGCTC+TGG | - | chr1_1:4318662-4318681 | None:intergenic | 50.0% | |
| ! | GTTTCTAGGCACGTGTAGGT+TGG | + | chr1_1:4318692-4318711 | Msa0002430:intron | 50.0% |
| !!! | GCACGTGTAGGTTGGTTTTG+TGG | + | chr1_1:4318700-4318719 | Msa0002430:intron | 50.0% |
| !!! | CGTGTAGGTTGGTTTTGTGG+GGG | + | chr1_1:4318703-4318722 | Msa0002430:intron | 50.0% |
| TATGCGGGACCAGCCAATTA+AGG | + | chr1_1:4318814-4318833 | Msa0002430:intron | 50.0% | |
| TGGCGGCTTCACCAGTTATT+TGG | + | chr1_1:4318964-4318983 | Msa0002430:intron | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr1_1:4319084-4319103 | Msa0002430:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr1_1:4319085-4319104 | Msa0002430:intron | 50.0% | |
| GGTTTAGGAGGAGAAAGGAG+GGG | - | chr1_1:4319276-4319295 | None:intergenic | 50.0% | |
| GGGTTTAGGAGGAGAAAGGA+GGG | - | chr1_1:4319277-4319296 | None:intergenic | 50.0% | |
| AGGGTTTAGGAGGAGAAAGG+AGG | - | chr1_1:4319278-4319297 | None:intergenic | 50.0% | |
| !! | GAGAAGTGTCCGTGCTTCAT+AGG | - | chr1_1:4319603-4319622 | None:intergenic | 50.0% |
| !! | GGTTGGTTTGGGGATGGATG+AGG | - | chr1_1:4317655-4317674 | None:intergenic | 55.0% |
| !! | AGTGGTGGTTGGTTTGGGGA+TGG | - | chr1_1:4317661-4317680 | None:intergenic | 55.0% |
| !! | TGGCAGTGGTGGTTGGTTTG+GGG | - | chr1_1:4317665-4317684 | None:intergenic | 55.0% |
| !! | GTGGCAGTGGTGGTTGGTTT+GGG | - | chr1_1:4317666-4317685 | None:intergenic | 55.0% |
| ! | TGTGGCAGTGGTGGTTGGTT+TGG | - | chr1_1:4317667-4317686 | None:intergenic | 55.0% |
| GAAGATGTGGCAGTGGTGGT+TGG | - | chr1_1:4317672-4317691 | None:intergenic | 55.0% | |
| TGGAGAAGATGTGGCAGTGG+TGG | - | chr1_1:4317676-4317695 | None:intergenic | 55.0% | |
| TCGGCGAAGTGGAGAAGATG+TGG | - | chr1_1:4317685-4317704 | None:intergenic | 55.0% | |
| CACGTCTCAGCGTAACTTCG+AGG | + | chr1_1:4317793-4317812 | Msa0002430:intron | 55.0% | |
| ! | CTAAGCGCCGCATGGATCTA+GGG | - | chr1_1:4318523-4318542 | None:intergenic | 55.0% |
| ! | ACTAAGCGCCGCATGGATCT+AGG | - | chr1_1:4318524-4318543 | None:intergenic | 55.0% |
| GAGTCTTCCAGAGCCTCCTT+TGG | + | chr1_1:4318652-4318671 | Msa0002430:intron | 55.0% | |
| ! | TCGGGTTTCTAGGCACGTGT+AGG | + | chr1_1:4318688-4318707 | Msa0002430:intron | 55.0% |
| TAGGAGGAGAAAGGAGGGGA+GGG | - | chr1_1:4319272-4319291 | None:intergenic | 55.0% | |
| TTAGGAGGAGAAAGGAGGGG+AGG | - | chr1_1:4319273-4319292 | None:intergenic | 55.0% | |
| GCACGGACACTTCTCGGATA+AGG | + | chr1_1:4319608-4319627 | Msa0002430:intron | 55.0% | |
| ACACGACACGTGTCTGACAC+GGG | - | chr1_1:4319640-4319659 | None:intergenic | 55.0% | |
| GACACGACACGTGTCTGACA+CGG | - | chr1_1:4319641-4319660 | None:intergenic | 55.0% | |
| GCACTATGAAGCACGGACAC+CGG | - | chr1_1:4319733-4319752 | None:intergenic | 55.0% | |
| TCCAGAATTGCGCCGGAGCT+TGG | + | chr1_1:4317714-4317733 | Msa0002430:CDS | 60.0% | |
| TCCAAGCTCCGGCGCAATTC+TGG | - | chr1_1:4317718-4317737 | None:intergenic | 60.0% | |
| GACTGCACGCATCCAAGCTC+CGG | - | chr1_1:4317729-4317748 | None:intergenic | 60.0% | |
| GCCACTTCACAGCGCAGTTG+CGG | + | chr1_1:4317755-4317774 | Msa0002430:CDS | 60.0% | |
| ACTTCACAGCGCAGTTGCGG+CGG | + | chr1_1:4317758-4317777 | Msa0002430:CDS | 60.0% | |
| ACTCTCTGCTGCACCTCTCC+CGG | + | chr1_1:4317840-4317859 | Msa0002430:intron | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr1_1:4319088-4319107 | Msa0002430:intron | 60.0% | |
| CACGACACGTGTCTGACACG+GGG | - | chr1_1:4319639-4319658 | None:intergenic | 60.0% | |
| ! | GCTGTGTCGGTGTCCATGTC+CGG | + | chr1_1:4319711-4319730 | Msa0002430:intron | 60.0% |
| TGAAGCACGGACACCGGACA+TGG | - | chr1_1:4319727-4319746 | None:intergenic | 60.0% | |
| GCCGCAACTGCGCTGTGAAG+TGG | - | chr1_1:4317759-4317778 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGCG+AGG | + | chr1_1:4319093-4319112 | Msa0002430:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGCGA+GGG | + | chr1_1:4319094-4319113 | Msa0002430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4317573 | 4321048 | 4317573 | ID=Msa0002430;Name=Msa0002430 |
| chr1_1 | mRNA | 4317573 | 4321048 | 4317573 | ID=Msa0002430-mRNA-1;Parent=Msa0002430;Name=Msa0002430-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0.25|1|1|1|4|383|120 |
| chr1_1 | exon | 4317573 | 4317803 | 4317573 | ID=Msa0002430-mRNA-1:exon:1323;Parent=Msa0002430-mRNA-1 |
| chr1_1 | exon | 4318795 | 4318801 | 4318795 | ID=Msa0002430-mRNA-1:exon:1324;Parent=Msa0002430-mRNA-1 |
| chr1_1 | exon | 4318913 | 4318977 | 4318913 | ID=Msa0002430-mRNA-1:exon:1325;Parent=Msa0002430-mRNA-1 |
| chr1_1 | exon | 4320606 | 4321048 | 4320606 | ID=Msa0002430-mRNA-1:exon:1326;Parent=Msa0002430-mRNA-1 |
| chr1_1 | CDS | 4317573 | 4317803 | 4317573 | ID=Msa0002430-mRNA-1:cds;Parent=Msa0002430-mRNA-1 |
| chr1_1 | CDS | 4318795 | 4318801 | 4318795 | ID=Msa0002430-mRNA-1:cds;Parent=Msa0002430-mRNA-1 |
| chr1_1 | CDS | 4318913 | 4318977 | 4318913 | ID=Msa0002430-mRNA-1:cds;Parent=Msa0002430-mRNA-1 |
| chr1_1 | CDS | 4320606 | 4320665 | 4320606 | ID=Msa0002430-mRNA-1:cds;Parent=Msa0002430-mRNA-1 |
| chr1_1 | three_prime_UTR | 4320666 | 4321048 | 4320666 | ID=Msa0002430-mRNA-1:three_prime_utr;Parent=Msa0002430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
