AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652810 MtrunA17_Chr4g0009811 94.667 75 4 0 1 75 1 75 2.75e-46 142
Msa0652810 MtrunA17_Chr4g0009821 90.667 75 7 0 1 75 1 75 4.97e-43 134
Msa0652810 MtrunA17_Chr7g0238571 50.725 69 31 2 8 75 12 78 5.49e-11 52.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCACAGAAACCGTGATTC+TGG 0.293571 4_3:-60564537 Msa0652810:CDS
CCATTTCAGCACCCTCAAAA+TGG 0.321140 4_3:+60564495 None:intergenic
AGCTATGGTTGCTTTGTGTT+TGG 0.396298 4_3:-60564216 Msa0652810:three_prime_UTR
CGTGATTCTGGGCGTTGGTC+CGG 0.396505 4_3:-60564525 Msa0652810:CDS
CCCTCAAAATGGATCTTTGC+CGG 0.397774 4_3:+60564506 None:intergenic
CCAATTTGAAGGTGCTGAAA+TGG 0.415709 4_3:-60572562 None:intergenic
AACAGCAGGTCTAGTGGGTT+GGG 0.444520 4_3:-60564575 Msa0652810:CDS
AAGCAAAGAATAATATTGAT+TGG 0.462469 4_3:+60566383 None:intergenic
CAACAGCAGGTCTAGTGGGT+TGG 0.483236 4_3:-60564576 Msa0652810:CDS
TTAATTAGAATAATATAAAG+TGG 0.488865 4_3:-60564299 Msa0652810:three_prime_UTR
CACTTCATTTGCAGTTGCAA+GGG 0.489807 4_3:+60564420 None:intergenic
ACCACAGAAACCGTGATTCT+GGG 0.490783 4_3:-60564536 Msa0652810:CDS
GCACTTCATTTGCAGTTGCA+AGG 0.491317 4_3:+60564419 None:intergenic
AGTTGAGTTGTGAATATGTC+TGG 0.501938 4_3:-60566356 Msa0652810:exon
TGCCTTGCAGATGCAACAGC+AGG 0.516088 4_3:-60564589 Msa0652810:intron
CAATTTGAAGGTGCTGAAAT+GGG 0.519160 4_3:-60572561 Msa0652810:five_prime_UTR
AGAATAATATAAAGTGGCCA+TGG 0.536779 4_3:-60564293 Msa0652810:three_prime_UTR
CCGGCCAAGATCCAATTTGA+AGG 0.537483 4_3:-60572573 None:intergenic
TGTGGAAGTAGTTGCAATTG+TGG 0.548819 4_3:-60566326 Msa0652810:CDS
AATATGTCTGGCTGTAATTG+TGG 0.558338 4_3:-60566344 Msa0652810:CDS
GCCCAGAATCACGGTTTCTG+TGG 0.562120 4_3:+60564535 None:intergenic
GAGGATGGTGGCTGCAAGTG+TGG 0.564753 4_3:-60564461 Msa0652810:CDS
GATGCAACAGCAGGTCTAGT+GGG 0.579454 4_3:-60564580 Msa0652810:CDS
TGAAGGTGTTATGAGAGCTA+TGG 0.586513 4_3:-60564231 Msa0652810:three_prime_UTR
TGAAATGGGTGTTGCAGCTG+AGG 0.589074 4_3:-60564480 Msa0652810:CDS
GAAACCGTGATTCTGGGCGT+TGG 0.589097 4_3:-60564530 Msa0652810:CDS
CGGACCAACGCCCAGAATCA+CGG 0.590019 4_3:+60564526 None:intergenic
ATGGGTGTTGCAGCTGAGGA+TGG 0.598628 4_3:-60564476 Msa0652810:CDS
AGTGGGTTGGGCTATCTCGA+AGG 0.606024 4_3:-60564563 Msa0652810:CDS
AGATGCAACAGCAGGTCTAG+TGG 0.608709 4_3:-60564581 Msa0652810:CDS
GGTGTTGCAGCTGAGGATGG+TGG 0.628303 4_3:-60564473 Msa0652810:CDS
AATGAAGTGCAACTTATGAA+AGG 0.633283 4_3:-60564406 Msa0652810:exon
ATGCACACAATTACACACGT+TGG 0.694565 4_3:+60564363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAATTTTTTTTTTTTT+TGG - chr4_3:60569137-60569156 Msa0652810:intron 0.0%
!!! TTTTTTTTTAAAATATATAA+GGG + chr4_3:60572067-60572086 None:intergenic 0.0%
!!! TTTTTTTTTTAAAATATATA+AGG + chr4_3:60572068-60572087 None:intergenic 0.0%
!!! CATTTTGTTTAAAATTATTT+TGG - chr4_3:60566196-60566215 Msa0652810:intron 10.0%
!! TAATTTGAATATTAATCAAT+TGG - chr4_3:60567259-60567278 Msa0652810:intron 10.0%
!!! ATTTTTCAATAAATAATGAT+CGG + chr4_3:60568292-60568311 None:intergenic 10.0%
!! TCTATTATGAATATTATAAA+TGG + chr4_3:60568976-60568995 None:intergenic 10.0%
!! CATAATAGATAATAATTAAT+AGG - chr4_3:60568987-60569006 Msa0652810:intron 10.0%
!!! AAAAATTGAATTTATTTTCA+AGG - chr4_3:60569035-60569054 Msa0652810:intron 10.0%
!!! AAAATTGAATTTATTTTCAA+GGG - chr4_3:60569036-60569055 Msa0652810:intron 10.0%
!! AATATATTTCTCAATTATAT+CGG + chr4_3:60569254-60569273 None:intergenic 10.0%
!!! ATATTTTTTTTATGAATTGA+AGG + chr4_3:60569669-60569688 None:intergenic 10.0%
!!! AACAATACTTAAATTTTAAA+GGG + chr4_3:60569709-60569728 None:intergenic 10.0%
!!! AAACAATACTTAAATTTTAA+AGG + chr4_3:60569710-60569729 None:intergenic 10.0%
!!! ATAATAAAATAAGTAACTTT+TGG + chr4_3:60571125-60571144 None:intergenic 10.0%
!!! TGAATATAAAACTTTAAAAA+TGG + chr4_3:60571340-60571359 None:intergenic 10.0%
!!! TGAATATAAAACTTTAAAAA+TGG + chr4_3:60571340-60571359 None:intergenic 10.0%
!! ATATATATTCTATCAATATT+TGG - chr4_3:60571578-60571597 Msa0652810:intron 10.0%
!! TTAAATAAGAAAATTAGATA+AGG - chr4_3:60571742-60571761 Msa0652810:intron 10.0%
!! AACAAAATATATATTATTTC+TGG + chr4_3:60571783-60571802 None:intergenic 10.0%
!! TTAATTAGAATAATATAAAG+TGG - chr4_3:60572420-60572439 Msa0652810:intron 10.0%
!!! ACTTCATATTATTCTAAAAA+AGG + chr4_3:60564356-60564375 None:intergenic 15.0%
!!! TTTTTTAGAATAATATGAAG+TGG - chr4_3:60564355-60564374 Msa0652810:three_prime_UTR 15.0%
!!! TTGTTTGAATATAAGTTTTT+TGG - chr4_3:60564539-60564558 Msa0652810:CDS 15.0%
!!! ATAGTAAATTTATTGACTAT+TGG + chr4_3:60565140-60565159 None:intergenic 15.0%
!!! TGAACTAAATCTAAAATATT+TGG - chr4_3:60565180-60565199 Msa0652810:intron 15.0%
!! AACCCAAATAAAATTTATTT+GGG + chr4_3:60566045-60566064 None:intergenic 15.0%
!! AAACCCAAATAAAATTTATT+TGG + chr4_3:60566046-60566065 None:intergenic 15.0%
!!! ATAAAACACGTTTTTAAAAA+AGG + chr4_3:60566293-60566312 None:intergenic 15.0%
!! AAATTGAAGAAATTCAAAAA+TGG + chr4_3:60566998-60567017 None:intergenic 15.0%
!!! ATTTTGGTGATTTAATATTT+TGG + chr4_3:60567612-60567631 None:intergenic 15.0%
!!! ATAATAGAAAGTGAATATTT+TGG + chr4_3:60567628-60567647 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr4_3:60568875-60568894 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr4_3:60568874-60568893 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr4_3:60568620-60568639 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr4_3:60568655-60568674 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr4_3:60568786-60568805 Msa0652810:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr4_3:60568874-60568893 Msa0652810:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr4_3:60568875-60568894 Msa0652810:intron 15.0%
!! TTCATAGAAAATTTATTGTT+TGG + chr4_3:60569328-60569347 None:intergenic 15.0%
!! TTTGTCAAAAAAAATATAAG+TGG - chr4_3:60569374-60569393 Msa0652810:intron 15.0%
!!! TTAAGTATTGTTTTTTGTTT+TGG - chr4_3:60569717-60569736 Msa0652810:intron 15.0%
!!! AAAATTAAGTCTAAAATTTG+AGG + chr4_3:60569775-60569794 None:intergenic 15.0%
!!! AAAGGATTTTTATTTGAAAT+TGG + chr4_3:60570014-60570033 None:intergenic 15.0%
!! AAGATTGAATTTAGTTAAAA+AGG + chr4_3:60570032-60570051 None:intergenic 15.0%
!! GAGAAATTATGAAAAATTAA+TGG + chr4_3:60570755-60570774 None:intergenic 15.0%
!!! TAATTTTTCATAATTTCTCT+AGG - chr4_3:60570756-60570775 Msa0652810:intron 15.0%
!!! AAAGAATCCTATTTAAAATA+TGG + chr4_3:60571059-60571078 None:intergenic 15.0%
!! TATTAGTAATAATATATCAC+AGG - chr4_3:60571221-60571240 Msa0652810:intron 15.0%
!! CTAATTAATATATTGATATG+AGG + chr4_3:60571718-60571737 None:intergenic 15.0%
!!! AAATATATATTATTTCTGGA+CGG + chr4_3:60571779-60571798 None:intergenic 15.0%
!!! ATTCAAATGTTCTTAGATTT+TGG - chr4_3:60564400-60564419 Msa0652810:three_prime_UTR 20.0%
!! TTATAGATTATCAATCAACT+AGG + chr4_3:60564674-60564693 None:intergenic 20.0%
!! ACTATTTAAAGGTTTCATTA+GGG + chr4_3:60564737-60564756 None:intergenic 20.0%
!! AACTGTGTTAAAACATATAA+TGG + chr4_3:60564982-60565001 None:intergenic 20.0%
!! TCATAATAATATTTGCATGA+TGG + chr4_3:60565163-60565182 None:intergenic 20.0%
!! AAAATATTTGGTCTCTTATA+AGG - chr4_3:60565192-60565211 Msa0652810:intron 20.0%
!! CTCATTACTTTATATTTACA+TGG + chr4_3:60565380-60565399 None:intergenic 20.0%
!!! TGTCTAAATACTTTTGATTT+GGG + chr4_3:60565928-60565947 None:intergenic 20.0%
!!! ATGTCTAAATACTTTTGATT+TGG + chr4_3:60565929-60565948 None:intergenic 20.0%
!! TGTACAAAGAAATATTATCT+AGG + chr4_3:60566470-60566489 None:intergenic 20.0%
!! TCTACATCAATAATTGTTAA+AGG - chr4_3:60566772-60566791 Msa0652810:intron 20.0%
!! AATATTTAACACCAAATGTT+TGG + chr4_3:60566857-60566876 None:intergenic 20.0%
!! AAATGGAATTTAAAGAGTTA+AGG + chr4_3:60566981-60567000 None:intergenic 20.0%
!!! TTTGAATTTCTTCAATTTTG+AGG - chr4_3:60567000-60567019 Msa0652810:intron 20.0%
!! TTATAAAGAGATCCATAAAT+AGG - chr4_3:60567551-60567570 Msa0652810:intron 20.0%
!! TACAGTAAGAAATAAAAACA+AGG + chr4_3:60567921-60567940 None:intergenic 20.0%
!!! TGTTTTTATTTCTTACTGTA+TGG - chr4_3:60567921-60567940 Msa0652810:intron 20.0%
!!! GTTTTTATTTCTTACTGTAT+GGG - chr4_3:60567922-60567941 Msa0652810:intron 20.0%
!! TAGATGTTCATATAACAATT+AGG - chr4_3:60568125-60568144 Msa0652810:intron 20.0%
!! TCATATAACAATTAGGTTAT+TGG - chr4_3:60568132-60568151 Msa0652810:intron 20.0%
!! TATTGAAAAATACAATGACT+TGG - chr4_3:60568301-60568320 Msa0652810:intron 20.0%
!! TAATTAACCCTTAAGTTATT+GGG + chr4_3:60568399-60568418 None:intergenic 20.0%
!! ATAATTAACCCTTAAGTTAT+TGG + chr4_3:60568400-60568419 None:intergenic 20.0%
!! AGTACAGAAAAACAAAATTA+GGG + chr4_3:60568492-60568511 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr4_3:60568525-60568544 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr4_3:60568526-60568545 None:intergenic 20.0%
!! CCATATAACAATTAAGTTAT+GGG + chr4_3:60568949-60568968 None:intergenic 20.0%
!! TCCATATAACAATTAAGTTA+TGG + chr4_3:60568950-60568969 None:intergenic 20.0%
!!! ATTCAATTTTTACTTCTCAA+AGG + chr4_3:60569026-60569045 None:intergenic 20.0%
!! TGAATAAAGAAACATAAAAG+TGG - chr4_3:60569344-60569363 Msa0652810:intron 20.0%
!!! AATACTTAAATTTTAAAGGG+TGG + chr4_3:60569706-60569725 None:intergenic 20.0%
!!! AAAAAAGTTTTCCCTAAATA+TGG + chr4_3:60569911-60569930 None:intergenic 20.0%
!!! AGGGAAAACTTTTTTAAAAT+AGG - chr4_3:60569916-60569935 Msa0652810:intron 20.0%
!!! TTTTATTTGAAATTGGAGAA+GGG + chr4_3:60570007-60570026 None:intergenic 20.0%
!!! TTTTTATTTGAAATTGGAGA+AGG + chr4_3:60570008-60570027 None:intergenic 20.0%
!! AAGCAAAGAATAATATTGAT+TGG + chr4_3:60570339-60570358 None:intergenic 20.0%
!! AAAAAAACAACAAAGAGTTA+AGG + chr4_3:60570445-60570464 None:intergenic 20.0%
!!! TTGTTTTTTCAGTACTTTTT+TGG - chr4_3:60570521-60570540 Msa0652810:intron 20.0%
!!! GATTGAAATTTTTGAAGAAA+AGG - chr4_3:60570898-60570917 Msa0652810:intron 20.0%
!! AAGTTGTCAATGTAAAAAAT+AGG - chr4_3:60570989-60571008 Msa0652810:intron 20.0%
!! AGTTGTCAATGTAAAAAATA+GGG - chr4_3:60570990-60571009 Msa0652810:intron 20.0%
!!! AACTCATCCATATTTTAAAT+AGG - chr4_3:60571049-60571068 Msa0652810:intron 20.0%
!! ATGATATTTATAGAGAAGTT+GGG + chr4_3:60571202-60571221 None:intergenic 20.0%
!! TATGATATTTATAGAGAAGT+TGG + chr4_3:60571203-60571222 None:intergenic 20.0%
!! AATAATATATCACAGGTTAA+CGG - chr4_3:60571228-60571247 Msa0652810:intron 20.0%
!!! TCTTTTTTTAAGTAACGATT+AGG - chr4_3:60571876-60571895 Msa0652810:intron 20.0%
! ATACACACAATTACACATAT+TGG + chr4_3:60564299-60564318 None:intergenic 25.0%
! AGAACATTTGAATTTGATGA+AGG + chr4_3:60564393-60564412 None:intergenic 25.0%
! TCAATTCAACTATGCTATAT+TGG - chr4_3:60564640-60564659 Msa0652810:intron 25.0%
! GACTATTTAAAGGTTTCATT+AGG + chr4_3:60564738-60564757 None:intergenic 25.0%
!! TGCGATAATTTTGCATAAAA+AGG - chr4_3:60564848-60564867 Msa0652810:intron 25.0%
!! GCGATAATTTTGCATAAAAA+GGG - chr4_3:60564849-60564868 Msa0652810:intron 25.0%
! TATTTGCAATACTCTTCAAA+TGG - chr4_3:60564938-60564957 Msa0652810:intron 25.0%
! TGTGTTAAAACATATAATGG+CGG + chr4_3:60564979-60564998 None:intergenic 25.0%
!! GTAAATTTATTGACTATTGG+TGG + chr4_3:60565137-60565156 None:intergenic 25.0%
! ATAAGGACTAGATTTATGAA+AGG - chr4_3:60565209-60565228 Msa0652810:intron 25.0%
!! AACTCTATATGTTACTTACT+AGG - chr4_3:60565233-60565252 Msa0652810:intron 25.0%
!! ACTCTATATGTTACTTACTA+GGG - chr4_3:60565234-60565253 Msa0652810:intron 25.0%
! CAATGACTTATGATCATATA+AGG + chr4_3:60565690-60565709 None:intergenic 25.0%
! CTTATATGATCATAAGTCAT+TGG - chr4_3:60565688-60565707 Msa0652810:intron 25.0%
!! TTCGTTTTGTGCATTTTATA+TGG + chr4_3:60565801-60565820 None:intergenic 25.0%
!! CCAAATATGGATGATTTTAT+GGG + chr4_3:60565862-60565881 None:intergenic 25.0%
!! TCTCCTTATTTAGTTATTCT+TGG + chr4_3:60565885-60565904 None:intergenic 25.0%
! ACTAAATAAGGAGAAATACT+TGG - chr4_3:60565891-60565910 Msa0652810:intron 25.0%
!!! GTCTAAATACTTTTGATTTG+GGG + chr4_3:60565927-60565946 None:intergenic 25.0%
!!! CGCCCAAATAAATTTTATTT+GGG - chr4_3:60566040-60566059 Msa0652810:intron 25.0%
!! TTTTCATCCATTTAGGTATT+GGG - chr4_3:60566554-60566573 Msa0652810:intron 25.0%
! CAATAATTGTTAAAGGATTG+AGG - chr4_3:60566779-60566798 Msa0652810:intron 25.0%
! ATTTGAAAGAAACTTGATTG+AGG - chr4_3:60567064-60567083 Msa0652810:intron 25.0%
! ATGATCAAATTGCATCAAAA+AGG - chr4_3:60567103-60567122 Msa0652810:intron 25.0%
! ATTTAGCGAATCACTTATTT+AGG + chr4_3:60567235-60567254 None:intergenic 25.0%
! AAATTTATACAGCTGAATTG+TGG + chr4_3:60567391-60567410 None:intergenic 25.0%
!! CAATTCAGCTGTATAAATTT+TGG - chr4_3:60567391-60567410 Msa0652810:intron 25.0%
!! TATAAGAGTGAAAGCATATA+TGG + chr4_3:60567536-60567555 None:intergenic 25.0%
! TAATAGTGGTATCAAAGTTT+GGG + chr4_3:60567655-60567674 None:intergenic 25.0%
! TTAATAGTGGTATCAAAGTT+TGG + chr4_3:60567656-60567675 None:intergenic 25.0%
! ACAAGATAAAATGCAGAATA+GGG + chr4_3:60567790-60567809 None:intergenic 25.0%
!!! ATCGATTTTTCTTCAATGTT+GGG + chr4_3:60567967-60567986 None:intergenic 25.0%
!!! AATCGATTTTTCTTCAATGT+TGG + chr4_3:60567968-60567987 None:intergenic 25.0%
! ATAATCACCACAAAACTAAA+AGG - chr4_3:60568047-60568066 Msa0652810:intron 25.0%
! TAATCACCACAAAACTAAAA+GGG - chr4_3:60568048-60568067 Msa0652810:intron 25.0%
! TTATGCATGAGCTAATAATA+TGG + chr4_3:60568159-60568178 None:intergenic 25.0%
!! TACAAGGTCACTATTTTATA+GGG + chr4_3:60568432-60568451 None:intergenic 25.0%
!! TTACAAGGTCACTATTTTAT+AGG + chr4_3:60568433-60568452 None:intergenic 25.0%
! CAGTACAGAAAAACAAAATT+AGG + chr4_3:60568493-60568512 None:intergenic 25.0%
! CAAGATTAGAACATTATGAA+AGG + chr4_3:60568752-60568771 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr4_3:60568814-60568833 Msa0652810:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr4_3:60568815-60568834 Msa0652810:intron 25.0%
! CCCATAACTTAATTGTTATA+TGG - chr4_3:60568946-60568965 Msa0652810:intron 25.0%
! CAATTGTTTATCAACAACAA+TGG - chr4_3:60569173-60569192 Msa0652810:intron 25.0%
! AAGATTCATTGTTCTTAAGA+CGG + chr4_3:60569204-60569223 None:intergenic 25.0%
!!! CACGGATAAGTTATTTTAAA+GGG + chr4_3:60569227-60569246 None:intergenic 25.0%
!!! TCACGGATAAGTTATTTTAA+AGG + chr4_3:60569228-60569247 None:intergenic 25.0%
!! TACACACATTTATGAGATTT+TGG - chr4_3:60569406-60569425 Msa0652810:intron 25.0%
! TTTATTGCTTTCACGAATAT+AGG - chr4_3:60569820-60569839 Msa0652810:intron 25.0%
! TTATTGCTTTCACGAATATA+GGG - chr4_3:60569821-60569840 Msa0652810:intron 25.0%
!! TTTTTACTGAAAAAACCGAA+TGG - chr4_3:60569944-60569963 Msa0652810:intron 25.0%
! CCTAAATTATAATTGCCATT+CGG + chr4_3:60569962-60569981 None:intergenic 25.0%
!! TGGCAATTATAATTTAGGAT+TGG - chr4_3:60569964-60569983 Msa0652810:intron 25.0%
!! CAATTATAATTTAGGATTGG+AGG - chr4_3:60569967-60569986 Msa0652810:intron 25.0%
! TAATCGTGTAATAAATCCAA+GGG - chr4_3:60570173-60570192 Msa0652810:intron 25.0%
! TGTATCTTATGAATGAATCT+TGG - chr4_3:60570478-60570497 Msa0652810:intron 25.0%
!!! TTTTCAGTACTTTTTTGGTT+AGG - chr4_3:60570526-60570545 Msa0652810:intron 25.0%
!!! ATTTTTCTTTTGTTTCTGCA+TGG - chr4_3:60570575-60570594 Msa0652810:intron 25.0%
!!! TTTTTCTTTTGTTTCTGCAT+GGG - chr4_3:60570576-60570595 Msa0652810:intron 25.0%
! TATATTTCCAGTTTCTTACA+CGG - chr4_3:60570609-60570628 Msa0652810:intron 25.0%
!! ACTTAACTTAATGAGTGTTT+TGG - chr4_3:60570847-60570866 Msa0652810:intron 25.0%
! TATTATATCCTTAGATTCAG+TGG - chr4_3:60571139-60571158 Msa0652810:intron 25.0%
! TGATATTTATAGAGAAGTTG+GGG + chr4_3:60571201-60571220 None:intergenic 25.0%
! TTATATTCAAAAAACAGTCC+TGG - chr4_3:60571351-60571370 Msa0652810:intron 25.0%
! TTATATTCAAAAAACAGTCC+TGG - chr4_3:60571351-60571370 Msa0652810:intron 25.0%
! AAGAGTTTCAAAAAATTGTC+AGG + chr4_3:60571556-60571575 None:intergenic 25.0%
!!! ATCTTGAGATATTTTTTTGG+GGG + chr4_3:60571606-60571625 None:intergenic 25.0%
!!! GATCTTGAGATATTTTTTTG+GGG + chr4_3:60571607-60571626 None:intergenic 25.0%
!!! GGATCTTGAGATATTTTTTT+GGG + chr4_3:60571608-60571627 None:intergenic 25.0%
!! ATGTTCTTAGATTTTGTTGA+AGG - chr4_3:60572471-60572490 Msa0652810:intron 25.0%
AGAATAATATGAAGTGGTCA+TGG - chr4_3:60564361-60564380 Msa0652810:three_prime_UTR 30.0%
!! ATGTTCTTAGATTTTGGTGA+AGG - chr4_3:60564406-60564425 Msa0652810:exon 30.0%
TTGGTTCATCAATATCAAGT+TGG - chr4_3:60564558-60564577 Msa0652810:CDS 30.0%
TTGAGCCATTAAGTCTTTAT+TGG - chr4_3:60564711-60564730 Msa0652810:intron 30.0%
TGTCTCTTGTGACTATTTAA+AGG + chr4_3:60564748-60564767 None:intergenic 30.0%
CATTAATGTTGAGACATCTT+TGG - chr4_3:60564887-60564906 Msa0652810:intron 30.0%
!! GAAGAGTATTGCAAATAACA+CGG + chr4_3:60564935-60564954 None:intergenic 30.0%
TGTTAAAACATATAATGGCG+GGG + chr4_3:60564977-60564996 None:intergenic 30.0%
GTGTTAAAACATATAATGGC+GGG + chr4_3:60564978-60564997 None:intergenic 30.0%
! TTCTAGAGATGTACCATTTA+CGG - chr4_3:60565277-60565296 Msa0652810:intron 30.0%
TAACAATTTCTTCCCGTAAA+TGG + chr4_3:60565293-60565312 None:intergenic 30.0%
TAACTGATCCTTATCACTAA+AGG + chr4_3:60565503-60565522 None:intergenic 30.0%
AGGATCAGTTACTATTAAGT+AGG - chr4_3:60565512-60565531 Msa0652810:intron 30.0%
ATTAGTTGTAGCATACGTAT+AGG + chr4_3:60565560-60565579 None:intergenic 30.0%
TGACTTATGATCATATAAGG+CGG + chr4_3:60565687-60565706 None:intergenic 30.0%
! AGTCTTCAAGAGTGTATAAT+TGG - chr4_3:60565734-60565753 Msa0652810:intron 30.0%
CCCATAAAATCATCCATATT+TGG - chr4_3:60565859-60565878 Msa0652810:intron 30.0%
! GCCAAATATGGATGATTTTA+TGG + chr4_3:60565863-60565882 None:intergenic 30.0%
TAGTTATTCTTGGCCAAATA+TGG + chr4_3:60565875-60565894 None:intergenic 30.0%
TGGCCAAGAATAACTAAATA+AGG - chr4_3:60565879-60565898 Msa0652810:intron 30.0%
AATAAGGAGAAATACTTGGT+TGG - chr4_3:60565895-60565914 Msa0652810:intron 30.0%
ATAAGGAGAAATACTTGGTT+GGG - chr4_3:60565896-60565915 Msa0652810:intron 30.0%
! GCGCCCAAATAAATTTTATT+TGG - chr4_3:60566039-60566058 Msa0652810:intron 30.0%
! TTATGCAAGACTTGTTCATT+TGG - chr4_3:60566070-60566089 Msa0652810:intron 30.0%
ACATTAGATTGTGACACTAT+AGG - chr4_3:60566487-60566506 Msa0652810:intron 30.0%
CATTAGATTGTGACACTATA+GGG - chr4_3:60566488-60566507 Msa0652810:intron 30.0%
AAAACCTAAAGGAAATATCG+AGG - chr4_3:60566531-60566550 Msa0652810:intron 30.0%
AAAACCTCGATATTTCCTTT+AGG + chr4_3:60566538-60566557 None:intergenic 30.0%
! GTTTTCATCCATTTAGGTAT+TGG - chr4_3:60566553-60566572 Msa0652810:intron 30.0%
! TTTCATCCATTTAGGTATTG+GGG - chr4_3:60566555-60566574 Msa0652810:intron 30.0%
AATTAACCCCAATACCTAAA+TGG + chr4_3:60566564-60566583 None:intergenic 30.0%
CAAGTCTCAACAAACAAAAT+TGG - chr4_3:60566818-60566837 Msa0652810:intron 30.0%
TAACCTTTGTACCAAACATT+TGG - chr4_3:60566843-60566862 Msa0652810:intron 30.0%
CAATTGAGTGATTAAGACTA+TGG + chr4_3:60567140-60567159 None:intergenic 30.0%
TGTAAGTTCATCCATTTGTA+TGG - chr4_3:60567487-60567506 Msa0652810:intron 30.0%
ATATATGGATTTCGTTTGAG+CGG + chr4_3:60567521-60567540 None:intergenic 30.0%
!!! ATATTTTGGTGCAATAGTAG+AGG + chr4_3:60567598-60567617 None:intergenic 30.0%
TACCACTATTAAATCATGAG+AGG - chr4_3:60567664-60567683 Msa0652810:intron 30.0%
CACAAGATAAAATGCAGAAT+AGG + chr4_3:60567791-60567810 None:intergenic 30.0%
! ATTTTTCTTCAATGTTGGGT+AGG + chr4_3:60567963-60567982 None:intergenic 30.0%
AATCACCACAAAACTAAAAG+GGG - chr4_3:60568049-60568068 Msa0652810:intron 30.0%
AGAAACAAACATCAATGACT+TGG + chr4_3:60568197-60568216 None:intergenic 30.0%
TTCTCTTGTGATACACAATT+AGG - chr4_3:60568260-60568279 Msa0652810:intron 30.0%
ACTTGGAAAATACAATGACA+TGG - chr4_3:60568318-60568337 Msa0652810:intron 30.0%
AGTATGACCCAATAACTTAA+GGG - chr4_3:60568389-60568408 Msa0652810:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr4_3:60568905-60568924 Msa0652810:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr4_3:60568906-60568925 Msa0652810:intron 30.0%
AGATTCATTGTTCTTAAGAC+GGG + chr4_3:60569203-60569222 None:intergenic 30.0%
! ACACATTTATGAGATTTTGG+TGG - chr4_3:60569409-60569428 Msa0652810:intron 30.0%
TACTAGATGAATCTACAACT+TGG - chr4_3:60569432-60569451 Msa0652810:intron 30.0%
!! ACTTAAATTTTAAAGGGTGG+TGG + chr4_3:60569703-60569722 None:intergenic 30.0%
! CGAATTTTGTAGTCATTGAT+TGG - chr4_3:60569880-60569899 Msa0652810:intron 30.0%
!! TTTTGTAGTCATTGATTGGA+AGG - chr4_3:60569884-60569903 Msa0652810:intron 30.0%
CCGAATGGCAATTATAATTT+AGG - chr4_3:60569959-60569978 Msa0652810:intron 30.0%
GTAATCGTGTAATAAATCCA+AGG - chr4_3:60570172-60570191 Msa0652810:intron 30.0%
!! GTTGTAATCTTGTGTTGTTT+GGG + chr4_3:60570211-60570230 None:intergenic 30.0%
! TGTTGTAATCTTGTGTTGTT+TGG + chr4_3:60570212-60570231 None:intergenic 30.0%
TTCTCTAGCACCTTATAAAT+TGG - chr4_3:60570259-60570278 Msa0652810:intron 30.0%
TCTCTAGCACCTTATAAATT+GGG - chr4_3:60570260-60570279 Msa0652810:intron 30.0%
!!! TTTTCTTTTGTTTCTGCATG+GGG - chr4_3:60570577-60570596 Msa0652810:intron 30.0%
GAGAAAAAACGGTGTTTATT+CGG + chr4_3:60570697-60570716 None:intergenic 30.0%
! TCTTACATCAATGAGCTTTT+TGG - chr4_3:60570806-60570825 Msa0652810:intron 30.0%
! CTTACATCAATGAGCTTTTT+GGG - chr4_3:60570807-60570826 Msa0652810:intron 30.0%
TGGAGATTACATGATTGAAA+AGG - chr4_3:60571023-60571042 Msa0652810:intron 30.0%
! AGGATTCTTTTAACCAAGAA+TGG - chr4_3:60571069-60571088 Msa0652810:intron 30.0%
ATATTTATAGAGAAGTTGGG+GGG + chr4_3:60571199-60571218 None:intergenic 30.0%
GATATTTATAGAGAAGTTGG+GGG + chr4_3:60571200-60571219 None:intergenic 30.0%
!!! TTTTTTGAATGTTGCATGGA+GGG + chr4_3:60571426-60571445 None:intergenic 30.0%
!!! TTTTTTTGAATGTTGCATGG+AGG + chr4_3:60571427-60571446 None:intergenic 30.0%
!!! CTGTTTTTTTGAATGTTGCA+TGG + chr4_3:60571430-60571449 None:intergenic 30.0%
!!! CGGATCTTGAGATATTTTTT+TGG + chr4_3:60571609-60571628 None:intergenic 30.0%
TATTCCCAAATAAACGCAAA+GGG + chr4_3:60571951-60571970 None:intergenic 30.0%
ATATTCCCAAATAAACGCAA+AGG + chr4_3:60571952-60571971 None:intergenic 30.0%
TTCACAATTCATGTGTATGA+TGG - chr4_3:60572100-60572119 Msa0652810:intron 30.0%
AATGAAGTGCAACTTATGAA+AGG - chr4_3:60572313-60572332 Msa0652810:intron 30.0%
AGAATAATATAAAGTGGCCA+TGG - chr4_3:60572426-60572445 Msa0652810:intron 30.0%
TGGCATATATCGACATAAGT+TGG - chr4_3:60564578-60564597 Msa0652810:CDS 35.0%
TGAGTTAACTCGTTACCAAA+TGG + chr4_3:60564605-60564624 None:intergenic 35.0%
! ATGGCTCAAAAAGTGCATTT+AGG + chr4_3:60564700-60564719 None:intergenic 35.0%
TAGGGCCAATAAAGACTTAA+TGG + chr4_3:60564719-60564738 None:intergenic 35.0%
! TTTAGAACATCACCATCAAG+TGG - chr4_3:60564789-60564808 Msa0652810:intron 35.0%
TCTCATTCTATTCCACTTGA+TGG + chr4_3:60564804-60564823 None:intergenic 35.0%
TCAAGTGGAATAGAATGAGA+AGG - chr4_3:60564804-60564823 Msa0652810:intron 35.0%
AAATAACACGGAATCAAGCT+TGG + chr4_3:60564923-60564942 None:intergenic 35.0%
!! AAGTTCACACTTTTCTAGAG+TGG - chr4_3:60565081-60565100 Msa0652810:intron 35.0%
TCTAGAGATGTACCATTTAC+GGG - chr4_3:60565278-60565297 Msa0652810:intron 35.0%
!! TACAAGAAGTGCTACTTCAT+AGG - chr4_3:60565450-60565469 Msa0652810:intron 35.0%
ACTTCATAGGTTAGCAAAAG+AGG - chr4_3:60565463-60565482 Msa0652810:intron 35.0%
TGACTAATTCAGCTTCTGTT+TGG - chr4_3:60565537-60565556 Msa0652810:intron 35.0%
CATCTTCTTCAAGTCAACAT+CGG - chr4_3:60565637-60565656 Msa0652810:intron 35.0%
CATTTGGTTGAAAACTTGTG+TGG - chr4_3:60566086-60566105 Msa0652810:intron 35.0%
! ACACTATAGGGTTTTGCAAT+AGG - chr4_3:60566500-60566519 Msa0652810:intron 35.0%
! CACTATAGGGTTTTGCAATA+GGG - chr4_3:60566501-60566520 Msa0652810:intron 35.0%
! ACTATAGGGTTTTGCAATAG+GGG - chr4_3:60566502-60566521 Msa0652810:intron 35.0%
! ATCGAGGTTTTCATCCATTT+AGG - chr4_3:60566547-60566566 Msa0652810:intron 35.0%
GACACCTTAACAACATTCAA+AGG - chr4_3:60566600-60566619 Msa0652810:intron 35.0%
CTCTCCTTTGAATGTTGTTA+AGG + chr4_3:60566607-60566626 None:intergenic 35.0%
AACATTCAAAGGAGAGTCAA+AGG - chr4_3:60566611-60566630 Msa0652810:intron 35.0%
AAGATCAAAGGAGGTCTAAA+AGG - chr4_3:60566644-60566663 Msa0652810:intron 35.0%
AAAGGAGGTCTAAAAGGATT+GGG - chr4_3:60566650-60566669 Msa0652810:intron 35.0%
TGTTAAAGGATTGAGGTTCT+TGG - chr4_3:60566786-60566805 Msa0652810:intron 35.0%
ACACCAAATGTTTGGTACAA+AGG + chr4_3:60566849-60566868 None:intergenic 35.0%
!! ATCCCTTGACTTTAGTCTTT+TGG - chr4_3:60566885-60566904 Msa0652810:intron 35.0%
CTCCAAAAGACTAAAGTCAA+GGG + chr4_3:60566890-60566909 None:intergenic 35.0%
ACTCCAAAAGACTAAAGTCA+AGG + chr4_3:60566891-60566910 None:intergenic 35.0%
!! TTGACTTTAGTCTTTTGGAG+TGG - chr4_3:60566890-60566909 Msa0652810:intron 35.0%
! TATGGCTCCAAATTTCTAGA+GGG + chr4_3:60567452-60567471 None:intergenic 35.0%
ACACTTGATTGTTTACGCTA+TGG + chr4_3:60567470-60567489 None:intergenic 35.0%
TATATGGATTTCGTTTGAGC+GGG + chr4_3:60567520-60567539 None:intergenic 35.0%
AAGAGATCCATAAATAGGAC+AGG - chr4_3:60567556-60567575 Msa0652810:intron 35.0%
CTCCTCTCATGATTTAATAG+TGG + chr4_3:60567669-60567688 None:intergenic 35.0%
GTTTAGCATTGCAACATAGT+AGG - chr4_3:60567816-60567835 Msa0652810:intron 35.0%
GTGTGTAGGAAAGTTACAAT+GGG + chr4_3:60567865-60567884 None:intergenic 35.0%
ATCACCACAAAACTAAAAGG+GGG - chr4_3:60568050-60568069 Msa0652810:intron 35.0%
CAGTATGACCCAATAACTTA+AGG - chr4_3:60568388-60568407 Msa0652810:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr4_3:60568890-60568909 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr4_3:60568890-60568909 Msa0652810:intron 35.0%
CTTCTCAAAGGACATGAAAT+GGG + chr4_3:60569014-60569033 None:intergenic 35.0%
ACTTCTCAAAGGACATGAAA+TGG + chr4_3:60569015-60569034 None:intergenic 35.0%
CTCAATTATATCGGATGTCA+CGG + chr4_3:60569245-60569264 None:intergenic 35.0%
TGATTGGAAGGTCCATATTT+AGG - chr4_3:60569896-60569915 Msa0652810:intron 35.0%
GATTGGAAGGTCCATATTTA+GGG - chr4_3:60569897-60569916 Msa0652810:intron 35.0%
CTCTAGCACCTTATAAATTG+GGG - chr4_3:60570261-60570280 Msa0652810:intron 35.0%
! AGTTGAGTTGTGAATATGTC+TGG - chr4_3:60570363-60570382 Msa0652810:intron 35.0%
AATATGTCTGGCTGTAATTG+TGG - chr4_3:60570375-60570394 Msa0652810:intron 35.0%
TAAGAAACCGTGTAAGAAAC+TGG + chr4_3:60570619-60570638 None:intergenic 35.0%
CTCTTATTGATACATGTCTC+CGG - chr4_3:60570656-60570675 Msa0652810:intron 35.0%
!!! AATGAGTGTTTTGGAAGAGA+TGG - chr4_3:60570856-60570875 Msa0652810:intron 35.0%
TGTCTAGTAGTAACCATTCT+TGG + chr4_3:60571085-60571104 None:intergenic 35.0%
TATATCCTTAGATTCAGTGG+CGG - chr4_3:60571142-60571161 Msa0652810:intron 35.0%
ATAAAAAATCAGGGTGTGAG+AGG + chr4_3:60571307-60571326 None:intergenic 35.0%
TATTCAAAAAACAGTCCTGG+TGG - chr4_3:60571386-60571405 Msa0652810:intron 35.0%
ATTCAAAAAACAGTCCTGGT+GGG - chr4_3:60571387-60571406 Msa0652810:intron 35.0%
TATTCAAAAAACAGTCCTGG+TGG - chr4_3:60571386-60571405 Msa0652810:intron 35.0%
ATTCAAAAAACAGTCCTGGT+GGG - chr4_3:60571387-60571406 Msa0652810:intron 35.0%
TTGTTTGCTTGAATGTTGCA+TGG + chr4_3:60571512-60571531 None:intergenic 35.0%
AGGATTATGAATTGTTGTGG+TGG + chr4_3:60571536-60571555 None:intergenic 35.0%
GTCAGGATTATGAATTGTTG+TGG + chr4_3:60571539-60571558 None:intergenic 35.0%
AAACATAATCTAAGCAGTGG+CGG + chr4_3:60571629-60571648 None:intergenic 35.0%
GCAAAACATAATCTAAGCAG+TGG + chr4_3:60571632-60571651 None:intergenic 35.0%
!! ATATTATTTCTGGACGGCTA+AGG + chr4_3:60571773-60571792 None:intergenic 35.0%
!! GCTATTTCTTGTAGAGTCTA+GGG - chr4_3:60571898-60571917 Msa0652810:intron 35.0%
TGCGTTTATTTGGGAATATG+TGG - chr4_3:60571953-60571972 Msa0652810:intron 35.0%
TTGGGAATATGTGGATCATT+AGG - chr4_3:60571962-60571981 Msa0652810:intron 35.0%
!! TTTTCTGAAGATGAGATCCA+TGG + chr4_3:60572446-60572465 None:intergenic 35.0%
CACTTCATTTGCAGTTGCAA+GGG + chr4_3:60564235-60564254 None:intergenic 40.0%
!! TCGACATAAGTTGGTCCATT+TGG - chr4_3:60564587-60564606 Msa0652810:intron 40.0%
TAACGAGTTAACTCATGCTC+TGG - chr4_3:60564610-60564629 Msa0652810:intron 40.0%
! TAATGGCGGGGAATATATTG+AGG + chr4_3:60564965-60564984 None:intergenic 40.0%
TTACTTCGTCTCTTTCCCTT+GGG - chr4_3:60565310-60565329 Msa0652810:intron 40.0%
CCTGAAGATAAATCACCCAA+GGG + chr4_3:60565328-60565347 None:intergenic 40.0%
TCCTGAAGATAAATCACCCA+AGG + chr4_3:60565329-60565348 None:intergenic 40.0%
ATGAGGCTCCTTTAGTGATA+AGG - chr4_3:60565492-60565511 Msa0652810:intron 40.0%
TCAACATCGGAGTTACCATT+GGG - chr4_3:60565650-60565669 Msa0652810:intron 40.0%
GGAGTTACCATTGGGTTTAA+CGG - chr4_3:60565658-60565677 Msa0652810:intron 40.0%
AAAATGCACAAAACGAACCC+AGG - chr4_3:60565804-60565823 Msa0652810:intron 40.0%
AAATGCACAAAACGAACCCA+GGG - chr4_3:60565805-60565824 Msa0652810:intron 40.0%
ATACTACTGTCGGATCATGA+AGG - chr4_3:60565833-60565852 Msa0652810:intron 40.0%
TACTACTGTCGGATCATGAA+GGG - chr4_3:60565834-60565853 Msa0652810:intron 40.0%
! CTATAGGGTTTTGCAATAGG+GGG - chr4_3:60566503-60566522 Msa0652810:intron 40.0%
AGGGGGCAATTAAAACCTAA+AGG - chr4_3:60566520-60566539 Msa0652810:intron 40.0%
TTCAAAGGAGAGTCAAAGGT+TGG - chr4_3:60566615-60566634 Msa0652810:intron 40.0%
TCAAAGGAGAGTCAAAGGTT+GGG - chr4_3:60566616-60566635 Msa0652810:intron 40.0%
CAAAGGAGGTCTAAAAGGAT+TGG - chr4_3:60566649-60566668 Msa0652810:intron 40.0%
GATAGACTGTCTCATCGTAT+TGG - chr4_3:60566703-60566722 Msa0652810:intron 40.0%
!! CTCATCGTATTGGTTGATCA+AGG - chr4_3:60566713-60566732 Msa0652810:intron 40.0%
!! TCGTATTGGTTGATCAAGGA+TGG - chr4_3:60566717-60566736 Msa0652810:intron 40.0%
! TCAAGGATGGTTGACTTCTA+AGG - chr4_3:60566730-60566749 Msa0652810:intron 40.0%
! CAAATTTCTAGAGGGGATGT+GGG + chr4_3:60567444-60567463 None:intergenic 40.0%
! ATGGCTCCAAATTTCTAGAG+GGG + chr4_3:60567451-60567470 None:intergenic 40.0%
! CTATGGCTCCAAATTTCTAG+AGG + chr4_3:60567453-60567472 None:intergenic 40.0%
!! TTTTGGTGCAATAGTAGAGG+TGG + chr4_3:60567595-60567614 None:intergenic 40.0%
CGTGTGTAGGAAAGTTACAA+TGG + chr4_3:60567866-60567885 None:intergenic 40.0%
TAACTTTCCTACACACGATG+TGG - chr4_3:60567869-60567888 Msa0652810:intron 40.0%
AACTTTCCTACACACGATGT+GGG - chr4_3:60567870-60567889 Msa0652810:intron 40.0%
ATTGCGTGCTCAAAGTTTCT+GGG - chr4_3:60568020-60568039 Msa0652810:intron 40.0%
!!! TTCTCCCCCTTTTAGTTTTG+TGG + chr4_3:60568057-60568076 None:intergenic 40.0%
CACTCTTCTTTGAATGTCCA+TGG + chr4_3:60568087-60568106 None:intergenic 40.0%
! TTTCATCGCACGTCTTATTG+TGG + chr4_3:60570147-60570166 None:intergenic 40.0%
CGTGTAATAAATCCAAGGGT+AGG - chr4_3:60570177-60570196 Msa0652810:intron 40.0%
CAACACAAGATTACAACACG+TGG - chr4_3:60570214-60570233 Msa0652810:intron 40.0%
ACAAGATTACAACACGTGGA+TGG - chr4_3:60570218-60570237 Msa0652810:intron 40.0%
GTACGTGACCCCAATTTATA+AGG + chr4_3:60570272-60570291 None:intergenic 40.0%
TGTGGAAGTAGTTGCAATTG+TGG - chr4_3:60570393-60570412 Msa0652810:intron 40.0%
TGTGGTGATAACTGCAAGTA+AGG - chr4_3:60570411-60570430 Msa0652810:intron 40.0%
TCGGTTCAGATTGATAAGTC+CGG + chr4_3:60570678-60570697 None:intergenic 40.0%
TTGCTTGAATGTTGCATGGA+GGG + chr4_3:60571508-60571527 None:intergenic 40.0%
TTTGCTTGAATGTTGCATGG+AGG + chr4_3:60571509-60571528 None:intergenic 40.0%
GATGTAACAACGAGGACAAA+AGG + chr4_3:60571824-60571843 None:intergenic 40.0%
TCCTCGTTGTTACATCCAAA+AGG - chr4_3:60571828-60571847 Msa0652810:intron 40.0%
! ACCTTTTGGATGTAACAACG+AGG + chr4_3:60571832-60571851 None:intergenic 40.0%
! TAGCTTCATCGTCAACCTTT+TGG + chr4_3:60571846-60571865 None:intergenic 40.0%
!! GGCTATTTCTTGTAGAGTCT+AGG - chr4_3:60571897-60571916 Msa0652810:intron 40.0%
TCCTCCCTTTGCGTTTATTT+GGG - chr4_3:60571944-60571963 Msa0652810:intron 40.0%
!!! CATTTTGAGGGTGCTGAAAT+GGG - chr4_3:60572225-60572244 Msa0652810:intron 40.0%
CACTTCATTTGCAGTTGCAA+GGG + chr4_3:60564235-60564254 None:intergenic 40.0%
ATGCACACAATTACACACGT+TGG + chr4_3:60572359-60572378 None:intergenic 40.0%
!! TGAAGGTGTTATGAGAGCTA+TGG - chr4_3:60564423-60564442 Msa0652810:exon 40.0%
! AGCTATGGTTGCTTTGTGTT+TGG - chr4_3:60572503-60572522 Msa0652810:intron 40.0%
GCACTTCATTTGCAGTTGCA+AGG + chr4_3:60564236-60564255 None:intergenic 45.0%
TCCACTATCTCTGCTTCAAG+AGG + chr4_3:60564275-60564294 None:intergenic 45.0%
AGCTATGATCGCTTCGTGTT+TGG - chr4_3:60564438-60564457 Msa0652810:CDS 45.0%
CGGAATCAAGCTTGGAAAGT+CGG + chr4_3:60564915-60564934 None:intergenic 45.0%
GTTACTTCGTCTCTTTCCCT+TGG - chr4_3:60565309-60565328 Msa0652810:intron 45.0%
CCCTTGGGTGATTTATCTTC+AGG - chr4_3:60565325-60565344 Msa0652810:intron 45.0%
ATCACTAAAGGAGCCTCATC+AGG + chr4_3:60565491-60565510 None:intergenic 45.0%
GTCAACATCGGAGTTACCAT+TGG - chr4_3:60565649-60565668 Msa0652810:intron 45.0%
CATGATCCGACAGTAGTATG+AGG + chr4_3:60565832-60565851 None:intergenic 45.0%
!! GGATGGTTGACTTCTAAGGT+TGG - chr4_3:60566734-60566753 Msa0652810:intron 45.0%
!! TGGTTGACTTCTAAGGTTGG+AGG - chr4_3:60566737-60566756 Msa0652810:intron 45.0%
!! GGTTGACTTCTAAGGTTGGA+GGG - chr4_3:60566738-60566757 Msa0652810:intron 45.0%
!! TTTGGAGTGGATTAGACCAC+TGG - chr4_3:60566903-60566922 Msa0652810:intron 45.0%
! CCAAATTTCTAGAGGGGATG+TGG + chr4_3:60567445-60567464 None:intergenic 45.0%
! CCACATCCCCTCTAGAAATT+TGG - chr4_3:60567442-60567461 Msa0652810:intron 45.0%
! CGGGAGCATATCCATACAAA+TGG + chr4_3:60567501-60567520 None:intergenic 45.0%
GGTGTGTCCTGTCCTATTTA+TGG + chr4_3:60567566-60567585 None:intergenic 45.0%
GAAGCGGAAGAAGGAACTTT+AGG + chr4_3:60567756-60567775 None:intergenic 45.0%
TTCCTTCTTCCGCTTCACTT+CGG - chr4_3:60567760-60567779 Msa0652810:intron 45.0%
AACTTTGAGCACGCAATGCA+AGG + chr4_3:60568017-60568036 None:intergenic 45.0%
CATTGCGTGCTCAAAGTTTC+TGG - chr4_3:60568019-60568038 Msa0652810:intron 45.0%
TTGCGTGCTCAAAGTTTCTG+GGG - chr4_3:60568021-60568040 Msa0652810:intron 45.0%
AGGGGGAGAATAATCTTCCA+TGG - chr4_3:60568067-60568086 Msa0652810:intron 45.0%
! CGTCTTATTGTGGTGTGCAT+TGG + chr4_3:60570137-60570156 None:intergenic 45.0%
TAAATCCAAGGGTAGGCTTG+TGG - chr4_3:60570184-60570203 Msa0652810:intron 45.0%
!!! ACACCGTTTTTTCTCGCATC+CGG - chr4_3:60570702-60570721 Msa0652810:intron 45.0%
CAACCGGATGCGAGAAAAAA+CGG + chr4_3:60570708-60570727 None:intergenic 45.0%
!!! TTTTTTCTCGCATCCGGTTG+AGG - chr4_3:60570708-60570727 Msa0652810:intron 45.0%
! TTTTTCTCGCATCCGGTTGA+GGG - chr4_3:60570709-60570728 Msa0652810:intron 45.0%
TTCTCCAAGATTCCCTCAAC+CGG + chr4_3:60570724-60570743 None:intergenic 45.0%
! CTAGGTGAACTTGCTTCTCT+AGG - chr4_3:60570774-60570793 Msa0652810:intron 45.0%
AAAAATAGGGTCGTTGCGTG+TGG - chr4_3:60571003-60571022 Msa0652810:intron 45.0%
TGTGAGAGGAATCCAACTCA+CGG + chr4_3:60571293-60571312 None:intergenic 45.0%
CAAATAAACGCAAAGGGAGG+AGG + chr4_3:60571945-60571964 None:intergenic 45.0%
CTCCTCCCTTTGCGTTTATT+TGG - chr4_3:60571943-60571962 Msa0652810:intron 45.0%
TCCCAAATAAACGCAAAGGG+AGG + chr4_3:60571948-60571967 None:intergenic 45.0%
AACCACAGAAACCGTGATTC+TGG - chr4_3:60572182-60572201 Msa0652810:intron 45.0%
ACCACAGAAACCGTGATTCT+GGG - chr4_3:60572183-60572202 Msa0652810:intron 45.0%
! TCCGGCAAAGATCCATTTTG+AGG - chr4_3:60572212-60572231 Msa0652810:intron 45.0%
CCCTCAAAATGGATCTTTGC+CGG + chr4_3:60572216-60572235 None:intergenic 45.0%
! CCGGCAAAGATCCATTTTGA+GGG - chr4_3:60572213-60572232 Msa0652810:intron 45.0%
CCATTTCAGCACCCTCAAAA+TGG + chr4_3:60572227-60572246 None:intergenic 45.0%
!!! CCATTTTGAGGGTGCTGAAA+TGG - chr4_3:60572224-60572243 Msa0652810:intron 45.0%
GCACTTCATTTGCAGTTGCA+AGG + chr4_3:60564236-60564255 None:intergenic 45.0%
!! TAATATATTCTATTTATAAT+AGG + chr4_3:60564514-60564533 None:intergenic 5.0%
!! AAATCAATAAAAAAAAAATT+AGG + chr4_3:60567048-60567067 None:intergenic 5.0%
!!! TTATAAGTAATTTTTTTTAT+AGG - chr4_3:60568845-60568864 Msa0652810:intron 5.0%
!!! TATAAGTAATTTTTTTTATA+GGG - chr4_3:60568846-60568865 Msa0652810:intron 5.0%
!! AATAAAAATATAAAAAATCA+GGG + chr4_3:60571316-60571335 None:intergenic 5.0%
!! AAATAAAAATATAAAAAATC+AGG + chr4_3:60571317-60571336 None:intergenic 5.0%
! TGAAATGGGTGTTGCAGCTG+AGG - chr4_3:60564172-60564191 Msa0652810:three_prime_UTR 50.0%
GCCTCTTGAAGCAGAGATAG+TGG - chr4_3:60564271-60564290 Msa0652810:three_prime_UTR 50.0%
AGCAAAAGAGGCTCCTGATG+AGG - chr4_3:60565475-60565494 Msa0652810:intron 50.0%
GACAGTAGTATGAGGTCCCT+GGG + chr4_3:60565824-60565843 None:intergenic 50.0%
CAGGGACCTCATACTACTGT+CGG - chr4_3:60565823-60565842 Msa0652810:intron 50.0%
GGTTGGGTGCTCAAGATCAA+AGG - chr4_3:60566632-60566651 Msa0652810:intron 50.0%
TGGGTGCTCAAGATCAAAGG+AGG - chr4_3:60566635-60566654 Msa0652810:intron 50.0%
!! AGTGGATTAGACCACTGGCA+AGG - chr4_3:60566908-60566927 Msa0652810:intron 50.0%
GATTAGACCACTGGCAAGGA+CGG - chr4_3:60566912-60566931 Msa0652810:intron 50.0%
CAATAGTAGAGGTGGTCACG+TGG + chr4_3:60567587-60567606 None:intergenic 50.0%
TAGGGTATGCCGAAGTGAAG+CGG + chr4_3:60567772-60567791 None:intergenic 50.0%
TCCTACACACGATGTGGGTT+TGG - chr4_3:60567875-60567894 Msa0652810:intron 50.0%
GAGATCCGCCACTGAATCTA+AGG + chr4_3:60571150-60571169 None:intergenic 50.0%
CAGGTTAACGGCTGTTGTAG+TGG - chr4_3:60571240-60571259 Msa0652810:intron 50.0%
AGATGCAACAGCAGGTCTAG+TGG - chr4_3:60572138-60572157 Msa0652810:intron 50.0%
GATGCAACAGCAGGTCTAGT+GGG - chr4_3:60572139-60572158 Msa0652810:intron 50.0%
!! AACAGCAGGTCTAGTGGGTT+GGG - chr4_3:60572144-60572163 Msa0652810:intron 50.0%
! TGAAATGGGTGTTGCAGCTG+AGG - chr4_3:60564172-60564191 Msa0652810:three_prime_UTR 50.0%
! ATGGGTGTTGCAGCTGAGGA+TGG - chr4_3:60564176-60564195 Msa0652810:three_prime_UTR 55.0%
GCGGCAACCGTTAAACCCAA+TGG + chr4_3:60565668-60565687 None:intergenic 55.0%
CGACAGTAGTATGAGGTCCC+TGG + chr4_3:60565825-60565844 None:intergenic 55.0%
TGCCGAAGTGAAGCGGAAGA+AGG + chr4_3:60567765-60567784 None:intergenic 55.0%
GCCAAACCCACATCGTGTGT+AGG + chr4_3:60567879-60567898 None:intergenic 55.0%
GCATCCGGTTGAGGGAATCT+TGG - chr4_3:60570717-60570736 Msa0652810:intron 55.0%
GGATCTCTATTGAGACCCCC+AGG - chr4_3:60571163-60571182 Msa0652810:intron 55.0%
ACACCCCCTCATCCATCTCT+TGG - chr4_3:60571267-60571286 Msa0652810:intron 55.0%
ACGGCCAAGAGATGGATGAG+GGG + chr4_3:60571274-60571293 None:intergenic 55.0%
CACGGCCAAGAGATGGATGA+GGG + chr4_3:60571275-60571294 None:intergenic 55.0%
TCACGGCCAAGAGATGGATG+AGG + chr4_3:60571276-60571295 None:intergenic 55.0%
TCCATCTCTTGGCCGTGAGT+TGG - chr4_3:60571278-60571297 Msa0652810:intron 55.0%
TCCAACTCACGGCCAAGAGA+TGG + chr4_3:60571282-60571301 None:intergenic 55.0%
! GAATGTTGCATGGAGGGCAC+TGG + chr4_3:60571420-60571439 None:intergenic 55.0%
! GAATGTTGCATGGAGGGCAC+TGG + chr4_3:60571420-60571439 None:intergenic 55.0%
AACGCAAAGGGAGGAGGATG+TGG + chr4_3:60571939-60571958 None:intergenic 55.0%
TGCCTTGCAGATGCAACAGC+AGG - chr4_3:60572130-60572149 Msa0652810:intron 55.0%
GACCTGCTGTTGCATCTGCA+AGG + chr4_3:60572135-60572154 None:intergenic 55.0%
! CAACAGCAGGTCTAGTGGGT+TGG - chr4_3:60572143-60572162 Msa0652810:intron 55.0%
!! AGTGGGTTGGGCTATCTCGA+AGG - chr4_3:60572156-60572175 Msa0652810:intron 55.0%
GCCCAGAATCACGGTTTCTG+TGG + chr4_3:60572187-60572206 None:intergenic 55.0%
GAAACCGTGATTCTGGGCGT+TGG - chr4_3:60572189-60572208 Msa0652810:intron 55.0%
! ATGGGTGTTGCAGCTGAGGA+TGG - chr4_3:60564176-60564195 Msa0652810:three_prime_UTR 55.0%
! GGTGTTGCAGCTGAGGATGG+TGG - chr4_3:60564179-60564198 Msa0652810:three_prime_UTR 60.0%
! GAGGATGGTGGCTGCAAGTG+TGG - chr4_3:60564191-60564210 Msa0652810:three_prime_UTR 60.0%
ACCACTGGCAAGGACGGTGT+TGG - chr4_3:60566918-60566937 Msa0652810:intron 60.0%
TCCAACACCGTCCTTGCCAG+TGG + chr4_3:60566922-60566941 None:intergenic 60.0%
TGGGTCCACAAGCCTACCCT+TGG + chr4_3:60570192-60570211 None:intergenic 60.0%
! AGAGAAGTTGGGGGGTGCAG+TGG + chr4_3:60571191-60571210 None:intergenic 60.0%
CGGCCAAGAGATGGATGAGG+GGG + chr4_3:60571273-60571292 None:intergenic 60.0%
!! GCACTGGTTCAACTCCCACC+AGG + chr4_3:60571404-60571423 None:intergenic 60.0%
!! GCACTGGTTCAACTCCCACC+AGG + chr4_3:60571404-60571423 None:intergenic 60.0%
GGAGGAGGATGTGGTGACTC+TGG + chr4_3:60571930-60571949 None:intergenic 60.0%
CGGACCAACGCCCAGAATCA+CGG + chr4_3:60572196-60572215 None:intergenic 60.0%
!! CGTGATTCTGGGCGTTGGTC+CGG - chr4_3:60572194-60572213 Msa0652810:intron 60.0%
! GGTGTTGCAGCTGAGGATGG+TGG - chr4_3:60564179-60564198 Msa0652810:three_prime_UTR 60.0%
! GAGGATGGTGGCTGCAAGTG+TGG - chr4_3:60564191-60564210 Msa0652810:three_prime_UTR 60.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr4_3:60571183-60571202 None:intergenic 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr4_3:60571184-60571203 None:intergenic 70.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr4_3:60571181-60571200 None:intergenic 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr4_3:60571182-60571201 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60564161 60572580 60564161 ID=Msa0652810;Name=Msa0652810
chr4_3 mRNA 60564161 60572580 60564161 ID=Msa0652810-mRNA-1;Parent=Msa0652810;Name=Msa0652810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|0.5|0.33|3|263|75
chr4_3 exon 60564161 60564601 60564161 ID=Msa0652810-mRNA-1:exon:16477;Parent=Msa0652810-mRNA-1
chr4_3 exon 60566314 60566438 60566314 ID=Msa0652810-mRNA-1:exon:16476;Parent=Msa0652810-mRNA-1
chr4_3 exon 60572560 60572580 60572560 ID=Msa0652810-mRNA-1:exon:16475;Parent=Msa0652810-mRNA-1
chr4_3 five_prime_UTR 60572560 60572580 60572560 ID=Msa0652810-mRNA-1:five_prime_utr;Parent=Msa0652810-mRNA-1
chr4_3 five_prime_UTR 60566364 60566438 60566364 ID=Msa0652810-mRNA-1:five_prime_utr;Parent=Msa0652810-mRNA-1
chr4_3 CDS 60566314 60566363 60566314 ID=Msa0652810-mRNA-1:cds;Parent=Msa0652810-mRNA-1
chr4_3 CDS 60564424 60564601 60564424 ID=Msa0652810-mRNA-1:cds;Parent=Msa0652810-mRNA-1
chr4_3 three_prime_UTR 60564161 60564423 60564161 ID=Msa0652810-mRNA-1:three_prime_utr;Parent=Msa0652810-mRNA-1
Gene Sequence

>Msa0652810

ATGTCTGGCTGTAATTGTGGAAGTAGTTGCAATTGTGGTGATAACTGCAAATGCAACAGCAGGTCTAGTGGGTTGGGCTATCTCGAAGGCGAAACCACAGAAACCGTGATTCTGGGCGTTGGTCCGGCAAAGATCCATTTTGAGGGTGCTGAAATGGGTGTTGCAGCTGAGGATGGTGGCTGCAAGTGTGGAGATAGCTGCACATGTGACCCTTGCAACTGCAAATGA
Protein sequence

>Msa0652810

MSGCNCGSSCNCGDNCKCNSRSSGLGYLEGETTETVILGVGPAKIHFEGAEMGVAAEDGGCKCGDSCTCDPCNCK*