Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631990 | XP_013455002.1 | 94.667 | 75 | 4 | 0 | 1 | 75 | 1 | 75 | 1.42e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631990 | sp|P20830|MT1_PEA | 90.667 | 75 | 7 | 0 | 1 | 75 | 1 | 75 | 1.05e-42 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0631990 | 0.807014 | 6.214828e-50 | -8.615850e-47 |
| Msa0014800 | Msa0631990 | 0.803988 | 2.680614e-49 | -8.615850e-47 |
| Msa0029850 | Msa0631990 | 0.808367 | 3.206466e-50 | -8.615850e-47 |
| Msa0050730 | Msa0631990 | 0.841293 | 5.187862e-58 | -8.615850e-47 |
| Msa0050760 | Msa0631990 | 0.842921 | 1.924677e-58 | -8.615850e-47 |
| Msa0051860 | Msa0631990 | 0.808957 | 2.398582e-50 | -8.615850e-47 |
| Msa0051930 | Msa0631990 | 0.804897 | 1.732654e-49 | -8.615850e-47 |
| Msa0052030 | Msa0631990 | 0.811189 | 7.930503e-51 | -8.615850e-47 |
| Msa0061150 | Msa0631990 | 0.812059 | 5.128837e-51 | -8.615850e-47 |
| Msa0077180 | Msa0631990 | 0.816651 | 4.955241e-52 | -8.615850e-47 |
| Msa0078750 | Msa0631990 | 0.852150 | 5.575867e-61 | -8.615850e-47 |
| Msa0092990 | Msa0631990 | 0.845339 | 4.320511e-59 | -8.615850e-47 |
| Msa0096940 | Msa0631990 | -0.819599 | 1.067124e-52 | -8.615850e-47 |
| Msa0102120 | Msa0631990 | 0.802215 | 6.235779e-49 | -8.615850e-47 |
| Msa0105700 | Msa0631990 | 0.831825 | 1.340136e-55 | -8.615850e-47 |
| Msa0120340 | Msa0631990 | 0.813986 | 1.939174e-51 | -8.615850e-47 |
| Msa0608710 | Msa0631990 | 0.816875 | 4.413502e-52 | -8.615850e-47 |
| Msa0610590 | Msa0631990 | 0.824060 | 9.902458e-54 | -8.615850e-47 |
| Msa0615340 | Msa0631990 | 0.801589 | 8.382777e-49 | -8.615850e-47 |
| Msa0617830 | Msa0631990 | 0.818932 | 1.514396e-52 | -8.615850e-47 |
| Msa0621750 | Msa0631990 | -0.823307 | 1.486250e-53 | -8.615850e-47 |
| Msa0628740 | Msa0631990 | 0.813603 | 2.354441e-51 | -8.615850e-47 |
| Msa0630960 | Msa0631990 | 0.800577 | 1.350292e-48 | -8.615850e-47 |
| Msa0631980 | Msa0631990 | 0.873100 | 1.910321e-67 | -8.615850e-47 |
| Msa0631990 | Msa0635380 | 0.834452 | 2.973161e-56 | -8.615850e-47 |
| Msa0631990 | Msa0640380 | 0.831958 | 1.242572e-55 | -8.615850e-47 |
| Msa0631990 | Msa0647450 | -0.812413 | 4.293806e-51 | -8.615850e-47 |
| Msa0631990 | Msa0647830 | 0.801714 | 7.903912e-49 | -8.615850e-47 |
| Msa0631990 | Msa0651190 | 0.823811 | 1.132989e-53 | -8.615850e-47 |
| Msa0631990 | Msa0652810 | 0.847115 | 1.418650e-59 | -8.615850e-47 |
| Msa0631990 | Msa0662650 | 0.835675 | 1.461733e-56 | -8.615850e-47 |
| Msa0631990 | Msa0666140 | 0.809186 | 2.143098e-50 | -8.615850e-47 |
| Msa0631990 | Msa0670660 | 0.985293 | 4.048662e-163 | -8.615850e-47 |
| Msa0631990 | Msa0673470 | 0.806675 | 7.329951e-50 | -8.615850e-47 |
| Msa0631990 | Msa0678820 | 0.856854 | 2.426812e-62 | -8.615850e-47 |
| Msa0631990 | Msa0692110 | 0.862379 | 5.283365e-64 | -8.615850e-47 |
| Msa0631990 | Msa0694250 | 0.802198 | 6.287091e-49 | -8.615850e-47 |
| Msa0631990 | Msa0704730 | 0.803123 | 4.050415e-49 | -8.615850e-47 |
| Msa0631990 | Msa0708860 | 0.834856 | 2.352671e-56 | -8.615850e-47 |
| Msa0631990 | Msa0714340 | 0.835761 | 1.390526e-56 | -8.615850e-47 |
| Msa0631990 | Msa0714380 | 0.819540 | 1.100837e-52 | -8.615850e-47 |
| Msa0631990 | Msa0720480 | 0.823024 | 1.730721e-53 | -8.615850e-47 |
| Msa0631990 | Msa0723110 | 0.813472 | 2.516391e-51 | -8.615850e-47 |
| Msa0631990 | Msa0724560 | 0.851448 | 8.815469e-61 | -8.615850e-47 |
| Msa0631990 | Msa0747260 | 0.802409 | 5.687905e-49 | -8.615850e-47 |
| Msa0631990 | Msa0751210 | 0.806545 | 7.809647e-50 | -8.615850e-47 |
| Msa0631990 | Msa0756310 | 0.861787 | 8.024725e-64 | -8.615850e-47 |
| Msa0631990 | Msa0767080 | 0.816217 | 6.196676e-52 | -8.615850e-47 |
| Msa0631990 | Msa0791910 | 0.817740 | 2.818844e-52 | -8.615850e-47 |
| Msa0631990 | Msa0793240 | 0.805504 | 1.293286e-49 | -8.615850e-47 |
| Msa0631990 | Msa0831590 | 0.812462 | 4.189001e-51 | -8.615850e-47 |
| Msa0631990 | Msa0835730 | 0.854140 | 1.500932e-61 | -8.615850e-47 |
| Msa0631990 | Msa0843250 | 0.812767 | 3.592289e-51 | -8.615850e-47 |
| Msa0631990 | Msa0846810 | 0.855175 | 7.525449e-62 | -8.615850e-47 |
| Msa0631990 | Msa0848900 | 0.845596 | 3.680752e-59 | -8.615850e-47 |
| Msa0631990 | Msa0869120 | 0.812150 | 4.899110e-51 | -8.615850e-47 |
| Msa0631990 | Msa0874500 | 0.802070 | 6.679042e-49 | -8.615850e-47 |
| Msa0631990 | Msa0876850 | -0.804013 | 2.647794e-49 | -8.615850e-47 |
| Msa0631990 | Msa0878880 | 0.809275 | 2.050791e-50 | -8.615850e-47 |
| Msa0631990 | Msa0908170 | 0.817523 | 3.156147e-52 | -8.615850e-47 |
| Msa0631990 | Msa0910980 | -0.820422 | 6.918744e-53 | -8.615850e-47 |
| Msa0631990 | Msa0927670 | 0.822350 | 2.482327e-53 | -8.615850e-47 |
| Msa0631990 | Msa0944550 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0631990 | Msa0960160 | 0.800781 | 1.226722e-48 | -8.615850e-47 |
| Msa0631990 | Msa0982270 | 0.872007 | 4.424462e-67 | -8.615850e-47 |
| Msa0631990 | Msa0992490 | -0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0631990 | Msa0999040 | 0.815812 | 7.631504e-52 | -8.615850e-47 |
| Msa0631990 | Msa1012830 | 0.801949 | 7.073131e-49 | -8.615850e-47 |
| Msa0631990 | Msa1039880 | 0.844166 | 8.944618e-59 | -8.615850e-47 |
| Msa0631990 | Msa1043050 | 0.802885 | 4.536955e-49 | -8.615850e-47 |
| Msa0631990 | Msa1054410 | 0.826561 | 2.535052e-54 | -8.615850e-47 |
| Msa0631990 | Msa1070850 | 0.803903 | 2.791770e-49 | -8.615850e-47 |
| Msa0631990 | Msa1075080 | -0.830336 | 3.110197e-55 | -8.615850e-47 |
| Msa0631990 | Msa1075220 | -0.804159 | 2.468844e-49 | -8.615850e-47 |
| Msa0631990 | Msa1087470 | 0.817709 | 2.865331e-52 | -8.615850e-47 |
| Msa0631990 | Msa1092090 | 0.853728 | 1.972649e-61 | -8.615850e-47 |
| Msa0631990 | Msa1115020 | 0.806734 | 7.124367e-50 | -8.615850e-47 |
| Msa0631990 | Msa1116690 | 0.838790 | 2.333240e-57 | -8.615850e-47 |
| Msa0631990 | Msa1119110 | 0.814471 | 1.515210e-51 | -8.615850e-47 |
| Msa0631990 | Msa1119210 | 0.818976 | 1.479895e-52 | -8.615850e-47 |
| Msa0631990 | Msa1129210 | 0.808479 | 3.034678e-50 | -8.615850e-47 |
| Msa0631990 | Msa1131940 | -0.801977 | 6.980180e-49 | -8.615850e-47 |
| Msa0631990 | Msa1141250 | -0.802302 | 5.984482e-49 | -8.615850e-47 |
| Msa0631990 | Msa1151710 | 0.808950 | 2.407410e-50 | -8.615850e-47 |
| Msa0631990 | Msa1158670 | 0.810934 | 9.005956e-51 | -8.615850e-47 |
| Msa0631990 | Msa1163590 | -0.809615 | 1.733222e-50 | -8.615850e-47 |
| Msa0631990 | Msa1174310 | 0.807765 | 4.307193e-50 | -8.615850e-47 |
| Msa0631990 | Msa1207380 | 0.815654 | 8.273751e-52 | -8.615850e-47 |
| Msa0631990 | Msa1217430 | -0.805123 | 1.553920e-49 | -8.615850e-47 |
| Msa0631990 | Msa1217810 | 0.836564 | 8.692160e-57 | -8.615850e-47 |
| Msa0631990 | Msa1219430 | 0.817312 | 3.520175e-52 | -8.615850e-47 |
| Msa0631990 | Msa1225150 | -0.833442 | 5.321186e-56 | -8.615850e-47 |
| Msa0631990 | Msa1233500 | 0.808751 | 2.655613e-50 | -8.615850e-47 |
| Msa0631990 | Msa1235400 | 0.803131 | 4.036394e-49 | -8.615850e-47 |
| Msa0631990 | Msa1252070 | 0.824829 | 6.530829e-54 | -8.615850e-47 |
| Msa0631990 | Msa1258380 | -0.849210 | 3.742049e-60 | -8.615850e-47 |
| Msa0631990 | Msa1267260 | 0.809638 | 1.713891e-50 | -8.615850e-47 |
| Msa0631990 | Msa1277280 | 0.820079 | 8.289562e-53 | -8.615850e-47 |
| Msa0631990 | Msa1279650 | 0.849301 | 3.531581e-60 | -8.615850e-47 |
| Msa0631990 | Msa1282920 | 0.812366 | 4.396781e-51 | -8.615850e-47 |
| Msa0631990 | Msa1292730 | 0.843859 | 1.081324e-58 | -8.615850e-47 |
| Msa0631990 | Msa1300050 | 0.802939 | 4.421555e-49 | -8.615850e-47 |
| Msa0631990 | Msa1302190 | -0.808348 | 3.236350e-50 | -8.615850e-47 |
| Msa0631990 | Msa1307740 | 0.879089 | 1.656272e-69 | -8.615850e-47 |
| Msa0631990 | Msa1314770 | 0.806190 | 9.278901e-50 | -8.615850e-47 |
| Msa0631990 | Msa1316560 | -0.820318 | 7.306537e-53 | -8.615850e-47 |
| Msa0631990 | Msa1322190 | 0.821936 | 3.097651e-53 | -8.615850e-47 |
| Msa0631990 | Msa1333990 | 0.800642 | 1.309342e-48 | -8.615850e-47 |
| Msa0631990 | Msa1348600 | 0.824535 | 7.658324e-54 | -8.615850e-47 |
| Msa0631990 | Msa1359650 | -0.803547 | 3.308633e-49 | -8.615850e-47 |
| Msa0631990 | Msa1370340 | 0.856573 | 2.936333e-62 | -8.615850e-47 |
| Msa0631990 | Msa1376160 | -0.804181 | 2.443643e-49 | -8.615850e-47 |
| Msa0631990 | Msa1376760 | 0.804895 | 1.734213e-49 | -8.615850e-47 |
| Msa0631990 | Msa1380430 | 0.818497 | 1.900564e-52 | -8.615850e-47 |
| Msa0631990 | Msa1386430 | 0.832495 | 9.151716e-56 | -8.615850e-47 |
| Msa0631990 | Msa1395440 | 0.807529 | 4.835923e-50 | -8.615850e-47 |
| Msa0631990 | Msa1408790 | 0.816400 | 5.638931e-52 | -8.615850e-47 |
| Msa0631990 | Msa1419110 | 0.803638 | 3.168394e-49 | -8.615850e-47 |
| Msa0631990 | Msa1434240 | 0.802993 | 4.309055e-49 | -8.615850e-47 |
| Msa0631990 | Msa1436040 | 0.816126 | 6.495158e-52 | -8.615850e-47 |
| Msa0631990 | Msa1440600 | 0.842162 | 3.059099e-58 | -8.615850e-47 |
| Msa0631990 | Msa1444250 | -0.850715 | 1.419104e-60 | -8.615850e-47 |
| Msa0631990 | Msa1444740 | 0.820526 | 6.546943e-53 | -8.615850e-47 |
| Msa0631990 | Msa1451620 | -0.817019 | 4.097740e-52 | -8.615850e-47 |
| Msa0631990 | Msa1462060 | 0.820364 | 7.131283e-53 | -8.615850e-47 |
| Msa0125050 | Msa0631990 | 0.809130 | 2.202597e-50 | -8.615850e-47 |
| Msa0144970 | Msa0631990 | -0.821025 | 5.027721e-53 | -8.615850e-47 |
| Msa0152170 | Msa0631990 | 0.817673 | 2.918296e-52 | -8.615850e-47 |
| Msa0169820 | Msa0631990 | 0.822622 | 2.146792e-53 | -8.615850e-47 |
| Msa0178860 | Msa0631990 | -0.805647 | 1.206755e-49 | -8.615850e-47 |
| Msa0187060 | Msa0631990 | 0.806607 | 7.578916e-50 | -8.615850e-47 |
| Msa0187220 | Msa0631990 | 0.817234 | 3.664524e-52 | -8.615850e-47 |
| Msa0222340 | Msa0631990 | 0.800994 | 1.109654e-48 | -8.615850e-47 |
| Msa0233610 | Msa0631990 | 0.810032 | 1.409863e-50 | -8.615850e-47 |
| Msa0236630 | Msa0631990 | 0.817372 | 3.411592e-52 | -8.615850e-47 |
| Msa0380040 | Msa0631990 | 0.823094 | 1.666394e-53 | -8.615850e-47 |
| Msa0388840 | Msa0631990 | 0.841813 | 3.783121e-58 | -8.615850e-47 |
| Msa0389810 | Msa0631990 | 0.878219 | 3.351290e-69 | -8.615850e-47 |
| Msa0391690 | Msa0631990 | 0.808273 | 3.358664e-50 | -8.615850e-47 |
| Msa0394340 | Msa0631990 | 0.843389 | 1.443999e-58 | -8.615850e-47 |
| Msa0429290 | Msa0631990 | 0.807347 | 5.283825e-50 | -8.615850e-47 |
| Msa0433530 | Msa0631990 | 0.810189 | 1.304742e-50 | -8.615850e-47 |
| Msa0442200 | Msa0631990 | 0.835465 | 1.652269e-56 | -8.615850e-47 |
| Msa0449760 | Msa0631990 | 0.861586 | 9.247659e-64 | -8.615850e-47 |
| Msa0449830 | Msa0631990 | 0.827616 | 1.417514e-54 | -8.615850e-47 |
| Msa0468130 | Msa0631990 | 0.870885 | 1.040312e-66 | -8.615850e-47 |
| Msa0475580 | Msa0631990 | 0.807472 | 4.971705e-50 | -8.615850e-47 |
| Msa0477260 | Msa0631990 | 0.818905 | 1.535546e-52 | -8.615850e-47 |
| Msa0482190 | Msa0631990 | -0.849523 | 3.062654e-60 | -8.615850e-47 |
| Msa0269450 | Msa0631990 | 0.837074 | 6.440733e-57 | -8.615850e-47 |
| Msa0307470 | Msa0631990 | 0.807089 | 5.991917e-50 | -8.615850e-47 |
| Msa0309550 | Msa0631990 | 0.824380 | 8.329724e-54 | -8.615850e-47 |
| Msa0315290 | Msa0631990 | 0.805327 | 1.408335e-49 | -8.615850e-47 |
| Msa0346430 | Msa0631990 | 0.806424 | 8.281992e-50 | -8.615850e-47 |
| Msa0347610 | Msa0631990 | 0.826119 | 3.230430e-54 | -8.615850e-47 |
| Msa0356960 | Msa0631990 | 0.863990 | 1.677806e-64 | -8.615850e-47 |
| Msa0358730 | Msa0631990 | 0.804677 | 1.925795e-49 | -8.615850e-47 |
| Msa0485500 | Msa0631990 | -0.847248 | 1.303966e-59 | -8.615850e-47 |
| Msa0489610 | Msa0631990 | 0.860401 | 2.120165e-63 | -8.615850e-47 |
| Msa0498230 | Msa0631990 | 0.805284 | 1.437728e-49 | -8.615850e-47 |
| Msa0519220 | Msa0631990 | 0.804561 | 2.036044e-49 | -8.615850e-47 |
| Msa0526670 | Msa0631990 | -0.804506 | 2.090954e-49 | -8.615850e-47 |
| Msa0539750 | Msa0631990 | 0.830648 | 2.608440e-55 | -8.615850e-47 |
| Msa0543900 | Msa0631990 | 0.844316 | 8.151223e-59 | -8.615850e-47 |
| Msa0553220 | Msa0631990 | -0.821126 | 4.766096e-53 | -8.615850e-47 |
| Msa0553460 | Msa0631990 | 0.802942 | 4.415356e-49 | -8.615850e-47 |
| Msa0568240 | Msa0631990 | 0.812441 | 4.233378e-51 | -8.615850e-47 |
| Msa0570330 | Msa0631990 | 0.805579 | 1.246915e-49 | -8.615850e-47 |
| Msa0577120 | Msa0631990 | 0.802842 | 4.630344e-49 | -8.615850e-47 |
| Msa0578970 | Msa0631990 | 0.823682 | 1.214276e-53 | -8.615850e-47 |
| Msa0587690 | Msa0631990 | 0.815979 | 7.001895e-52 | -8.615850e-47 |
| Msa0591710 | Msa0631990 | 0.917393 | 5.604787e-86 | -8.615850e-47 |
| Msa0595850 | Msa0631990 | 0.851938 | 6.403569e-61 | -8.615850e-47 |
| Msa0599580 | Msa0631990 | 0.829686 | 4.479867e-55 | -8.615850e-47 |
| Msa0599770 | Msa0631990 | 0.856135 | 3.946268e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631990 | MtrunA17_Chr4g0009821 | 94.667 | 75 | 4 | 0 | 1 | 75 | 1 | 75 | 1.31e-45 | 140 |
| Msa0631990 | MtrunA17_Chr4g0009811 | 82.667 | 75 | 13 | 0 | 1 | 75 | 1 | 75 | 1.70e-39 | 124 |
| Msa0631990 | MtrunA17_Chr7g0238571 | 56.522 | 69 | 27 | 2 | 8 | 75 | 12 | 78 | 1.71e-13 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAATGTTCTTAGATTT+TGG | 0.126318 | 4_3:-15538231 | Msa0631990:three_prime_UTR |
| AACCACAGAAACCGTGATTT+TGG | 0.184588 | 4_3:-15538516 | Msa0631990:CDS |
| CCATTTCAGCACCTTCAAAT+TGG | 0.222108 | 4_3:+15538474 | None:intergenic |
| TGCAAAGAACAAATTTATAT+TGG | 0.266509 | 4_3:+15539340 | None:intergenic |
| TAATATATTCTATTTATAAT+AGG | 0.305439 | 4_3:+15538120 | None:intergenic |
| GGTTTCTGTGGTTTCGGCCT+CGG | 0.316189 | 4_3:+15538526 | None:intergenic |
| AATCACGGTTTCTGTGGTTT+CGG | 0.340586 | 4_3:+15538520 | None:intergenic |
| ATACACACAATTACACATAT+TGG | 0.348552 | 4_3:+15538335 | None:intergenic |
| AGCACCTTCAAATTGGATCT+TGG | 0.377145 | 4_3:+15538481 | None:intergenic |
| GCACTTCATTTGCAGTTGCA+AGG | 0.406733 | 4_3:+15538398 | None:intergenic |
| CCAATTTGAAGGTGCTGAAA+TGG | 0.415709 | 4_3:-15538474 | Msa0631990:CDS |
| AGCTATGATCGCTTCGTGTT+TGG | 0.420712 | 4_3:-15538193 | Msa0631990:three_prime_UTR |
| GCCTCTTGAAGCAGAGATAG+TGG | 0.443076 | 4_3:-15538360 | Msa0631990:three_prime_UTR |
| AAGAACAAATTTATATTGGT+TGG | 0.448696 | 4_3:+15539344 | None:intergenic |
| AGAACATTTGAATTTGATGA+AGG | 0.454645 | 4_3:+15538241 | None:intergenic |
| CACTTCATTTGCAGTTGCAA+GGG | 0.477731 | 4_3:+15538399 | None:intergenic |
| TTGGTTCATCAATATCAAGT+TGG | 0.502926 | 4_3:-15538073 | Msa0631990:three_prime_UTR |
| AGAATAATATGAAGTGGTCA+TGG | 0.517932 | 4_3:-15538270 | Msa0631990:three_prime_UTR |
| CAATTTGAAGGTGCTGAAAT+GGG | 0.519160 | 4_3:-15538473 | Msa0631990:CDS |
| CCTTCAAATTGGATCTTGGC+CGG | 0.520393 | 4_3:+15538485 | None:intergenic |
| TCCACTATCTCTGCTTCAAG+AGG | 0.522381 | 4_3:+15538359 | None:intergenic |
| AATATGTCTAGCTGTGGTTG+TGG | 0.535056 | 4_3:-15539292 | Msa0631990:CDS |
| CCGGCCAAGATCCAATTTGA+AGG | 0.537483 | 4_3:-15538485 | Msa0631990:CDS |
| TGGCATATATCGACATAAGT+TGG | 0.537615 | 4_3:-15538053 | Msa0631990:three_prime_UTR |
| GCCCAAAATCACGGTTTCTG+TGG | 0.561475 | 4_3:+15538514 | None:intergenic |
| GAGGATGGTGGCTGCAAGTG+TGG | 0.564753 | 4_3:-15538440 | Msa0631990:CDS |
| CGGACCAACGCCCAAAATCA+CGG | 0.579536 | 4_3:+15538505 | None:intergenic |
| TGAAATGGGTGTTGCAGCTG+AGG | 0.589074 | 4_3:-15538459 | Msa0631990:CDS |
| ATGGGTGTTGCAGCTGAGGA+TGG | 0.598628 | 4_3:-15538455 | Msa0631990:CDS |
| AGATGCAGCAAGAGGTCTAG+TGG | 0.607417 | 4_3:-15538560 | Msa0631990:CDS |
| TACTTGGCAGATGCAGCAAG+AGG | 0.622933 | 4_3:-15538568 | Msa0631990:intron |
| GGTGTTGCAGCTGAGGATGG+TGG | 0.628303 | 4_3:-15538452 | Msa0631990:CDS |
| TGTGGAAGCAGTTGCAACTG+TGG | 0.645986 | 4_3:-15539274 | Msa0631990:CDS |
| TAGTGGATTGAGCTATGCCG+AGG | 0.657350 | 4_3:-15538543 | Msa0631990:CDS |
| TCTGAAAATATGTCTAGCTG+TGG | 0.682059 | 4_3:-15539298 | Msa0631990:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATATTTCTTTTATGA+GGG | - | chr4_3:15538489-15538508 | Msa0631990:CDS | 10.0% |
| !!! | TATAATTGATTTTTATTACT+TGG | - | chr4_3:15538841-15538860 | Msa0631990:intron | 10.0% |
| !!! | TATTTATATTTCTTTTATGA+GGG | - | chr4_3:15538489-15538508 | Msa0631990:CDS | 10.0% |
| !!! | TATAATTGATTTTTATTACT+TGG | - | chr4_3:15538841-15538860 | Msa0631990:intron | 10.0% |
| !!! | AATAGTCATATAATTTTGTT+TGG | + | chr4_3:15538223-15538242 | None:intergenic | 15.0% |
| !!! | TTTTAATTTATGATGATTCT+TGG | - | chr4_3:15538262-15538281 | Msa0631990:three_prime_UTR | 15.0% |
| !! | GATCATTAAATTAATATACT+TGG | - | chr4_3:15538418-15538437 | Msa0631990:CDS | 15.0% |
| !!! | GTATTTATATTTCTTTTATG+AGG | - | chr4_3:15538488-15538507 | Msa0631990:CDS | 15.0% |
| !!! | ACTTCATATTATTCTAAAAA+AGG | + | chr4_3:15539150-15539169 | None:intergenic | 15.0% |
| !!! | TTTTTTAGAATAATATGAAG+TGG | - | chr4_3:15539149-15539168 | Msa0631990:intron | 15.0% |
| !!! | TTGTTTGAATATAAGTTTTT+TGG | - | chr4_3:15539333-15539352 | Msa0631990:five_prime_UTR | 15.0% |
| !!! | AATAGTCATATAATTTTGTT+TGG | + | chr4_3:15538223-15538242 | None:intergenic | 15.0% |
| !!! | TTTTAATTTATGATGATTCT+TGG | - | chr4_3:15538262-15538281 | Msa0631990:three_prime_UTR | 15.0% |
| !! | GATCATTAAATTAATATACT+TGG | - | chr4_3:15538418-15538437 | Msa0631990:CDS | 15.0% |
| !!! | GTATTTATATTTCTTTTATG+AGG | - | chr4_3:15538488-15538507 | Msa0631990:CDS | 15.0% |
| !!! | ACTTCATATTATTCTAAAAA+AGG | + | chr4_3:15539150-15539169 | None:intergenic | 15.0% |
| !!! | TTTTTTAGAATAATATGAAG+TGG | - | chr4_3:15539149-15539168 | Msa0631990:intron | 15.0% |
| !!! | TTGTTTGAATATAAGTTTTT+TGG | - | chr4_3:15539333-15539352 | Msa0631990:five_prime_UTR | 15.0% |
| !! | AAGAACAAATTTATATTGGT+TGG | + | chr4_3:15538084-15538103 | None:intergenic | 20.0% |
| !! | TGCAAAGAACAAATTTATAT+TGG | + | chr4_3:15538088-15538107 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTATCTTCAT+AGG | - | chr4_3:15538341-15538360 | Msa0631990:three_prime_UTR | 20.0% |
| !!! | AAATTTGATTTGTGTTTAGA+AGG | - | chr4_3:15538463-15538482 | Msa0631990:CDS | 20.0% |
| !!! | AATTTGATTTGTGTTTAGAA+GGG | - | chr4_3:15538464-15538483 | Msa0631990:CDS | 20.0% |
| !! | AGTGTACAATAATAATTCAT+CGG | - | chr4_3:15538764-15538783 | Msa0631990:intron | 20.0% |
| !!! | ATTCAAATGTTCTTAGATTT+TGG | - | chr4_3:15539194-15539213 | Msa0631990:intron | 20.0% |
| !! | AAGAACAAATTTATATTGGT+TGG | + | chr4_3:15538084-15538103 | None:intergenic | 20.0% |
| !! | TGCAAAGAACAAATTTATAT+TGG | + | chr4_3:15538088-15538107 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTATCTTCAT+AGG | - | chr4_3:15538341-15538360 | Msa0631990:three_prime_UTR | 20.0% |
| !!! | AAATTTGATTTGTGTTTAGA+AGG | - | chr4_3:15538463-15538482 | Msa0631990:CDS | 20.0% |
| !!! | AATTTGATTTGTGTTTAGAA+GGG | - | chr4_3:15538464-15538483 | Msa0631990:CDS | 20.0% |
| !! | AGTGTACAATAATAATTCAT+CGG | - | chr4_3:15538764-15538783 | Msa0631990:intron | 20.0% |
| !!! | ATTCAAATGTTCTTAGATTT+TGG | - | chr4_3:15539194-15539213 | Msa0631990:intron | 20.0% |
| !!! | TGTTTTTTCCATGATTCTTT+TGG | - | chr4_3:15538295-15538314 | Msa0631990:three_prime_UTR | 25.0% |
| !!! | ATTTGATTTGTGTTTAGAAG+GGG | - | chr4_3:15538465-15538484 | Msa0631990:CDS | 25.0% |
| !! | TAATTCATCGGTATCAATTT+TGG | - | chr4_3:15538776-15538795 | Msa0631990:intron | 25.0% |
| ! | ATACACACAATTACACATAT+TGG | + | chr4_3:15539093-15539112 | None:intergenic | 25.0% |
| ! | AGAACATTTGAATTTGATGA+AGG | + | chr4_3:15539187-15539206 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCCATGATTCTTT+TGG | - | chr4_3:15538295-15538314 | Msa0631990:three_prime_UTR | 25.0% |
| !!! | ATTTGATTTGTGTTTAGAAG+GGG | - | chr4_3:15538465-15538484 | Msa0631990:CDS | 25.0% |
| !! | TAATTCATCGGTATCAATTT+TGG | - | chr4_3:15538776-15538795 | Msa0631990:intron | 25.0% |
| ! | ATACACACAATTACACATAT+TGG | + | chr4_3:15539093-15539112 | None:intergenic | 25.0% |
| ! | AGAACATTTGAATTTGATGA+AGG | + | chr4_3:15539187-15539206 | None:intergenic | 25.0% |
| AAAGCAACAAAAAGTTAAGG+TGG | + | chr4_3:15538200-15538219 | None:intergenic | 30.0% | |
| TGGAAAGCAACAAAAAGTTA+AGG | + | chr4_3:15538203-15538222 | None:intergenic | 30.0% | |
| ! | TTTTCCATGATTCTTTTGGT+TGG | - | chr4_3:15538299-15538318 | Msa0631990:three_prime_UTR | 30.0% |
| !! | TTTCCATGATTCTTTTGGTT+GGG | - | chr4_3:15538300-15538319 | Msa0631990:three_prime_UTR | 30.0% |
| !! | TTTGATTTGTGTTTAGAAGG+GGG | - | chr4_3:15538466-15538485 | Msa0631990:CDS | 30.0% |
| GTCAAATGCAATTAAGTAAG+AGG | - | chr4_3:15538599-15538618 | Msa0631990:intron | 30.0% | |
| !! | AACTCTTTACCATTGACTTA+AGG | + | chr4_3:15538708-15538727 | None:intergenic | 30.0% |
| AGAATAATATGAAGTGGTCA+TGG | - | chr4_3:15539155-15539174 | Msa0631990:intron | 30.0% | |
| !! | ATGTTCTTAGATTTTGGTGA+AGG | - | chr4_3:15539200-15539219 | Msa0631990:intron | 30.0% |
| TTGGTTCATCAATATCAAGT+TGG | - | chr4_3:15539352-15539371 | Msa0631990:five_prime_UTR | 30.0% | |
| AAAGCAACAAAAAGTTAAGG+TGG | + | chr4_3:15538200-15538219 | None:intergenic | 30.0% | |
| TGGAAAGCAACAAAAAGTTA+AGG | + | chr4_3:15538203-15538222 | None:intergenic | 30.0% | |
| ! | TTTTCCATGATTCTTTTGGT+TGG | - | chr4_3:15538299-15538318 | Msa0631990:three_prime_UTR | 30.0% |
| !! | TTTCCATGATTCTTTTGGTT+GGG | - | chr4_3:15538300-15538319 | Msa0631990:three_prime_UTR | 30.0% |
| !! | TTTGATTTGTGTTTAGAAGG+GGG | - | chr4_3:15538466-15538485 | Msa0631990:CDS | 30.0% |
| GTCAAATGCAATTAAGTAAG+AGG | - | chr4_3:15538599-15538618 | Msa0631990:intron | 30.0% | |
| !! | AACTCTTTACCATTGACTTA+AGG | + | chr4_3:15538708-15538727 | None:intergenic | 30.0% |
| AGAATAATATGAAGTGGTCA+TGG | - | chr4_3:15539155-15539174 | Msa0631990:intron | 30.0% | |
| !! | ATGTTCTTAGATTTTGGTGA+AGG | - | chr4_3:15539200-15539219 | Msa0631990:intron | 30.0% |
| TTGGTTCATCAATATCAAGT+TGG | - | chr4_3:15539352-15539371 | Msa0631990:five_prime_UTR | 30.0% | |
| TCTGAAAATATGTCTAGCTG+TGG | - | chr4_3:15538127-15538146 | Msa0631990:three_prime_UTR | 35.0% | |
| ATAAGATATGCACAACGACT+TGG | - | chr4_3:15538674-15538693 | Msa0631990:intron | 35.0% | |
| !! | CAATTTGAAGGTGCTGAAAT+GGG | - | chr4_3:15538952-15538971 | Msa0631990:intron | 35.0% |
| TGGCATATATCGACATAAGT+TGG | - | chr4_3:15539372-15539391 | Msa0631990:five_prime_UTR | 35.0% | |
| TCTGAAAATATGTCTAGCTG+TGG | - | chr4_3:15538127-15538146 | Msa0631990:three_prime_UTR | 35.0% | |
| ATAAGATATGCACAACGACT+TGG | - | chr4_3:15538674-15538693 | Msa0631990:intron | 35.0% | |
| !! | CAATTTGAAGGTGCTGAAAT+GGG | - | chr4_3:15538952-15538971 | Msa0631990:intron | 35.0% |
| TGGCATATATCGACATAAGT+TGG | - | chr4_3:15539372-15539391 | Msa0631990:five_prime_UTR | 35.0% | |
| AATATGTCTAGCTGTGGTTG+TGG | - | chr4_3:15538133-15538152 | Msa0631990:three_prime_UTR | 40.0% | |
| GAACCCAACCAAAAGAATCA+TGG | + | chr4_3:15538306-15538325 | None:intergenic | 40.0% | |
| AATCACGGTTTCTGTGGTTT+CGG | + | chr4_3:15538908-15538927 | None:intergenic | 40.0% | |
| ! | AACCACAGAAACCGTGATTT+TGG | - | chr4_3:15538909-15538928 | Msa0631990:intron | 40.0% |
| ! | ACCACAGAAACCGTGATTTT+GGG | - | chr4_3:15538910-15538929 | Msa0631990:intron | 40.0% |
| AGCACCTTCAAATTGGATCT+TGG | + | chr4_3:15538947-15538966 | None:intergenic | 40.0% | |
| CCATTTCAGCACCTTCAAAT+TGG | + | chr4_3:15538954-15538973 | None:intergenic | 40.0% | |
| !! | CCAATTTGAAGGTGCTGAAA+TGG | - | chr4_3:15538951-15538970 | Msa0631990:intron | 40.0% |
| CACTTCATTTGCAGTTGCAA+GGG | + | chr4_3:15539029-15539048 | None:intergenic | 40.0% | |
| AATATGTCTAGCTGTGGTTG+TGG | - | chr4_3:15538133-15538152 | Msa0631990:three_prime_UTR | 40.0% | |
| GAACCCAACCAAAAGAATCA+TGG | + | chr4_3:15538306-15538325 | None:intergenic | 40.0% | |
| AATCACGGTTTCTGTGGTTT+CGG | + | chr4_3:15538908-15538927 | None:intergenic | 40.0% | |
| ! | AACCACAGAAACCGTGATTT+TGG | - | chr4_3:15538909-15538928 | Msa0631990:intron | 40.0% |
| ! | ACCACAGAAACCGTGATTTT+GGG | - | chr4_3:15538910-15538929 | Msa0631990:intron | 40.0% |
| AGCACCTTCAAATTGGATCT+TGG | + | chr4_3:15538947-15538966 | None:intergenic | 40.0% | |
| CCATTTCAGCACCTTCAAAT+TGG | + | chr4_3:15538954-15538973 | None:intergenic | 40.0% | |
| !! | CCAATTTGAAGGTGCTGAAA+TGG | - | chr4_3:15538951-15538970 | Msa0631990:intron | 40.0% |
| CACTTCATTTGCAGTTGCAA+GGG | + | chr4_3:15539029-15539048 | None:intergenic | 40.0% | |
| TGTGGTGATAGCTGCAAGTA+AGG | - | chr4_3:15538169-15538188 | Msa0631990:three_prime_UTR | 45.0% | |
| ! | AGATATGCACAACGACTTGG+CGG | - | chr4_3:15538677-15538696 | Msa0631990:intron | 45.0% |
| CCTTCAAATTGGATCTTGGC+CGG | + | chr4_3:15538943-15538962 | None:intergenic | 45.0% | |
| GCACTTCATTTGCAGTTGCA+AGG | + | chr4_3:15539030-15539049 | None:intergenic | 45.0% | |
| TCCACTATCTCTGCTTCAAG+AGG | + | chr4_3:15539069-15539088 | None:intergenic | 45.0% | |
| AGCTATGATCGCTTCGTGTT+TGG | - | chr4_3:15539232-15539251 | Msa0631990:intron | 45.0% | |
| TGTGGTGATAGCTGCAAGTA+AGG | - | chr4_3:15538169-15538188 | Msa0631990:three_prime_UTR | 45.0% | |
| ! | AGATATGCACAACGACTTGG+CGG | - | chr4_3:15538677-15538696 | Msa0631990:intron | 45.0% |
| CCTTCAAATTGGATCTTGGC+CGG | + | chr4_3:15538943-15538962 | None:intergenic | 45.0% | |
| GCACTTCATTTGCAGTTGCA+AGG | + | chr4_3:15539030-15539049 | None:intergenic | 45.0% | |
| TCCACTATCTCTGCTTCAAG+AGG | + | chr4_3:15539069-15539088 | None:intergenic | 45.0% | |
| AGCTATGATCGCTTCGTGTT+TGG | - | chr4_3:15539232-15539251 | Msa0631990:intron | 45.0% | |
| !! | TAATATATTCTATTTATAAT+AGG | + | chr4_3:15539308-15539327 | None:intergenic | 5.0% |
| !! | TAATATATTCTATTTATAAT+AGG | + | chr4_3:15539308-15539327 | None:intergenic | 5.0% |
| TGTGGAAGCAGTTGCAACTG+TGG | - | chr4_3:15538151-15538170 | Msa0631990:three_prime_UTR | 50.0% | |
| ! | GATATGCACAACGACTTGGC+GGG | - | chr4_3:15538678-15538697 | Msa0631990:intron | 50.0% |
| GCGGGTACTCCTTAAGTCAA+TGG | - | chr4_3:15538696-15538715 | Msa0631990:intron | 50.0% | |
| TACTTGGCAGATGCAGCAAG+AGG | - | chr4_3:15538857-15538876 | Msa0631990:intron | 50.0% | |
| AGATGCAGCAAGAGGTCTAG+TGG | - | chr4_3:15538865-15538884 | Msa0631990:intron | 50.0% | |
| !! | TAGTGGATTGAGCTATGCCG+AGG | - | chr4_3:15538882-15538901 | Msa0631990:intron | 50.0% |
| GCCCAAAATCACGGTTTCTG+TGG | + | chr4_3:15538914-15538933 | None:intergenic | 50.0% | |
| ! | GAAACCGTGATTTTGGGCGT+TGG | - | chr4_3:15538916-15538935 | Msa0631990:intron | 50.0% |
| CCGGCCAAGATCCAATTTGA+AGG | - | chr4_3:15538940-15538959 | Msa0631990:intron | 50.0% | |
| ! | TGAAATGGGTGTTGCAGCTG+AGG | - | chr4_3:15538966-15538985 | Msa0631990:intron | 50.0% |
| GCCTCTTGAAGCAGAGATAG+TGG | - | chr4_3:15539065-15539084 | Msa0631990:intron | 50.0% | |
| TGTGGAAGCAGTTGCAACTG+TGG | - | chr4_3:15538151-15538170 | Msa0631990:three_prime_UTR | 50.0% | |
| ! | GATATGCACAACGACTTGGC+GGG | - | chr4_3:15538678-15538697 | Msa0631990:intron | 50.0% |
| GCGGGTACTCCTTAAGTCAA+TGG | - | chr4_3:15538696-15538715 | Msa0631990:intron | 50.0% | |
| TACTTGGCAGATGCAGCAAG+AGG | - | chr4_3:15538857-15538876 | Msa0631990:intron | 50.0% | |
| AGATGCAGCAAGAGGTCTAG+TGG | - | chr4_3:15538865-15538884 | Msa0631990:intron | 50.0% | |
| !! | TAGTGGATTGAGCTATGCCG+AGG | - | chr4_3:15538882-15538901 | Msa0631990:intron | 50.0% |
| GCCCAAAATCACGGTTTCTG+TGG | + | chr4_3:15538914-15538933 | None:intergenic | 50.0% | |
| ! | GAAACCGTGATTTTGGGCGT+TGG | - | chr4_3:15538916-15538935 | Msa0631990:intron | 50.0% |
| CCGGCCAAGATCCAATTTGA+AGG | - | chr4_3:15538940-15538959 | Msa0631990:intron | 50.0% | |
| ! | TGAAATGGGTGTTGCAGCTG+AGG | - | chr4_3:15538966-15538985 | Msa0631990:intron | 50.0% |
| GCCTCTTGAAGCAGAGATAG+TGG | - | chr4_3:15539065-15539084 | Msa0631990:intron | 50.0% | |
| GGTTTCTGTGGTTTCGGCCT+CGG | + | chr4_3:15538902-15538921 | None:intergenic | 55.0% | |
| CGGACCAACGCCCAAAATCA+CGG | + | chr4_3:15538923-15538942 | None:intergenic | 55.0% | |
| !!! | CGTGATTTTGGGCGTTGGTC+CGG | - | chr4_3:15538921-15538940 | Msa0631990:intron | 55.0% |
| ! | ATGGGTGTTGCAGCTGAGGA+TGG | - | chr4_3:15538970-15538989 | Msa0631990:intron | 55.0% |
| GGTTTCTGTGGTTTCGGCCT+CGG | + | chr4_3:15538902-15538921 | None:intergenic | 55.0% | |
| CGGACCAACGCCCAAAATCA+CGG | + | chr4_3:15538923-15538942 | None:intergenic | 55.0% | |
| !!! | CGTGATTTTGGGCGTTGGTC+CGG | - | chr4_3:15538921-15538940 | Msa0631990:intron | 55.0% |
| ! | ATGGGTGTTGCAGCTGAGGA+TGG | - | chr4_3:15538970-15538989 | Msa0631990:intron | 55.0% |
| ! | GGTGTTGCAGCTGAGGATGG+TGG | - | chr4_3:15538973-15538992 | Msa0631990:intron | 60.0% |
| ! | GAGGATGGTGGCTGCAAGTG+TGG | - | chr4_3:15538985-15539004 | Msa0631990:intron | 60.0% |
| ! | GGTGTTGCAGCTGAGGATGG+TGG | - | chr4_3:15538973-15538992 | Msa0631990:intron | 60.0% |
| ! | GAGGATGGTGGCTGCAAGTG+TGG | - | chr4_3:15538985-15539004 | Msa0631990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 15538051 | 15539396 | 15538051 | ID=Msa0631990;Name=Msa0631990 |
| chr4_3 | mRNA | 15538051 | 15539396 | 15538051 | ID=Msa0631990-mRNA-1;Parent=Msa0631990;Name=Msa0631990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|2|352|75 |
| chr4_3 | exon | 15538051 | 15538580 | 15538051 | ID=Msa0631990-mRNA-1:exon:4416;Parent=Msa0631990-mRNA-1 |
| chr4_3 | exon | 15539262 | 15539396 | 15539262 | ID=Msa0631990-mRNA-1:exon:4415;Parent=Msa0631990-mRNA-1 |
| chr4_3 | five_prime_UTR | 15539312 | 15539396 | 15539312 | ID=Msa0631990-mRNA-1:five_prime_utr;Parent=Msa0631990-mRNA-1 |
| chr4_3 | CDS | 15539262 | 15539311 | 15539262 | ID=Msa0631990-mRNA-1:cds;Parent=Msa0631990-mRNA-1 |
| chr4_3 | CDS | 15538403 | 15538580 | 15538403 | ID=Msa0631990-mRNA-1:cds;Parent=Msa0631990-mRNA-1 |
| chr4_3 | three_prime_UTR | 15538051 | 15538402 | 15538051 | ID=Msa0631990-mRNA-1:three_prime_utr;Parent=Msa0631990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
