AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1466730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466730 MtrunA17_Chr8g0377921 96.154 130 5 0 1 130 334 463 5.75e-88 263
Msa1466730 MtrunA17_Chr8g0377941 83.077 130 22 0 1 130 332 461 2.66e-78 238
Msa1466730 MtrunA17_Chr3g0121991 77.863 131 27 1 1 131 418 546 6.66e-72 224
Msa1466730 MtrunA17_Chr3g0122001 77.692 130 27 1 1 130 825 952 5.09e-65 212
Msa1466730 MtrunA17_Chr3g0122001 77.692 130 28 1 1 130 345 473 1.15e-64 211
Msa1466730 MtrunA17_Chr5g0414331 56.250 128 53 2 1 128 327 451 6.81e-48 159
Msa1466730 MtrunA17_Chr8g0380531 55.639 133 56 2 1 133 331 460 1.98e-47 158
Msa1466730 MtrunA17_Chr5g0414321 55.469 128 54 2 1 128 325 449 1.11e-46 156
Msa1466730 MtrunA17_Chr7g0250001 54.615 130 56 2 1 130 321 447 2.63e-46 155
Msa1466730 MtrunA17_Chr6g0464841 55.303 132 56 2 1 132 328 456 4.59e-46 154
Msa1466730 MtrunA17_Chr6g0464861 55.303 132 56 2 1 132 327 455 8.96e-46 154
Msa1466730 MtrunA17_Chr1g0207981 49.231 130 63 2 1 130 346 472 1.82e-45 153
Msa1466730 MtrunA17_Chr6g0464871 53.030 132 59 2 1 132 340 468 1.35e-44 151
Msa1466730 MtrunA17_Chr3g0098111 50.382 131 62 2 1 130 341 469 1.37e-44 151
Msa1466730 MtrunA17_Chr7g0249961 52.344 128 58 2 3 130 135 259 2.86e-44 145
Msa1466730 MtrunA17_Chr6g0464921 55.469 128 54 2 1 128 329 453 1.08e-43 148
Msa1466730 MtrunA17_Chr1g0207931 48.485 132 67 1 1 132 369 499 3.14e-43 148
Msa1466730 MtrunA17_Chr1g0207881 49.242 132 66 1 1 132 256 386 3.61e-43 145
Msa1466730 MtrunA17_Chr7g0249981 53.600 125 55 2 3 127 342 463 4.31e-43 147
Msa1466730 MtrunA17_Chr8g0365811 49.231 130 65 1 1 130 829 957 8.34e-43 149
Msa1466730 MtrunA17_Chr8g0365811 46.923 130 68 1 1 130 347 475 3.55e-36 130
Msa1466730 MtrunA17_Chr6g0464881 53.906 128 56 2 1 128 328 452 1.59e-42 145
Msa1466730 MtrunA17_Chr1g0207951 49.242 132 66 1 1 132 980 1110 5.85e-42 147
Msa1466730 MtrunA17_Chr1g0207951 43.182 132 72 2 1 132 444 572 3.08e-36 130
Msa1466730 MtrunA17_Chr7g0249931 47.692 130 66 1 1 130 356 483 2.96e-40 140
Msa1466730 MtrunA17_Chr1g0207971 46.212 132 68 2 1 132 327 455 6.96e-40 138
Msa1466730 MtrunA17_Chr4g0053501 50.394 127 60 2 1 127 338 461 1.62e-39 138
Msa1466730 MtrunA17_Chr1g0207831 45.926 135 67 4 1 132 334 465 4.01e-39 136
Msa1466730 MtrunA17_Chr4g0053321 48.819 127 62 2 1 127 353 476 4.20e-38 134
Msa1466730 MtrunA17_Chr1g0207861 50.000 130 64 1 1 130 340 468 6.60e-38 133
Msa1466730 MtrunA17_Chr1g0161351 51.128 133 62 2 1 132 369 499 6.97e-38 134
Msa1466730 MtrunA17_Chr7g0243871 44.361 133 67 1 3 128 338 470 1.08e-33 122
Msa1466730 MtrunA17_Chr8g0336691 49.587 121 58 2 3 123 788 905 3.69e-33 122
Msa1466730 MtrunA17_Chr8g0336691 49.587 121 58 2 3 123 1255 1372 7.94e-33 121
Msa1466730 MtrunA17_Chr8g0336691 46.281 121 62 2 3 123 349 466 2.80e-30 114
Msa1466730 MtrunA17_Chr5g0401721 43.846 130 70 2 1 130 344 470 3.76e-33 120
Msa1466730 MtrunA17_Chr5g0432731 40.458 131 77 1 1 130 166 296 1.24e-32 116
Msa1466730 MtrunA17_Chr8g0336651 48.760 121 59 2 3 123 1119 1236 1.82e-32 120
Msa1466730 MtrunA17_Chr8g0336651 49.153 118 57 2 6 123 343 457 2.50e-30 114
Msa1466730 MtrunA17_Chr8g0336651 46.281 121 62 2 3 123 650 767 1.31e-29 112
Msa1466730 MtrunA17_Chr7g0243631 43.284 134 68 1 3 128 351 484 3.04e-32 118
Msa1466730 MtrunA17_Chr3g0118691 44.615 130 65 1 1 130 360 482 3.11e-32 118
Msa1466730 MtrunA17_Chr7g0218811 41.406 128 69 2 1 128 326 447 4.07e-32 117
Msa1466730 MtrunA17_Chr7g0265141 43.796 137 67 2 1 127 346 482 6.10e-32 117
Msa1466730 MtrunA17_Chr3g0118671 40.152 132 72 1 1 132 351 475 8.63e-32 117
Msa1466730 MtrunA17_Chr3g0106231 42.537 134 76 1 1 133 321 454 3.10e-31 115
Msa1466730 MtrunA17_Chr7g0243801 42.857 133 69 1 3 128 342 474 3.32e-31 115
Msa1466730 MtrunA17_Chr5g0419771 42.222 135 68 2 6 130 378 512 6.23e-31 115
Msa1466730 MtrunA17_Chr3g0118721 42.308 130 68 1 1 130 167 289 7.05e-31 111
Msa1466730 MtrunA17_Chr7g0235051 42.647 136 70 2 1 128 316 451 8.51e-31 114
Msa1466730 MtrunA17_Chr3g0118771 44.094 127 64 2 1 127 366 485 9.96e-31 114
Msa1466730 MtrunA17_Chr6g0454361 39.231 130 72 2 1 130 358 480 1.34e-30 114
Msa1466730 MtrunA17_Chr7g0243931 42.105 133 70 1 3 128 356 488 1.52e-30 114
Msa1466730 MtrunA17_Chr7g0243771 42.105 133 70 1 3 128 341 473 1.55e-30 114
Msa1466730 MtrunA17_Chr5g0431441 39.695 131 78 1 1 130 335 465 1.81e-30 113
Msa1466730 MtrunA17_Chr6g0454131 40.769 130 70 2 1 130 356 478 3.72e-30 112
Msa1466730 MtrunA17_Chr3g0106251 41.791 134 77 1 1 133 163 296 5.70e-30 109
Msa1466730 MtrunA17_Chr6g0454301 41.538 130 69 2 1 130 608 730 7.43e-30 112
Msa1466730 MtrunA17_Chr6g0454301 38.583 127 71 2 1 127 107 226 3.91e-26 102
Msa1466730 MtrunA17_Chr3g0118711 40.769 130 70 1 1 130 358 480 8.09e-30 112
Msa1466730 MtrunA17_Chr5g0431361 38.060 134 80 2 1 131 321 454 1.09e-29 111
Msa1466730 MtrunA17_Chr8g0336741 45.455 121 63 2 3 123 347 464 1.11e-29 111
Msa1466730 MtrunA17_Chr6g0449931 46.610 118 60 2 6 123 346 460 1.21e-29 111
Msa1466730 MtrunA17_Chr7g0217881 41.463 123 65 2 1 123 339 454 1.33e-29 111
Msa1466730 MtrunA17_Chr1g0179901 42.553 141 70 3 1 130 353 493 1.75e-29 110
Msa1466730 MtrunA17_Chr8g0336731 43.200 125 68 2 3 127 366 487 2.10e-29 110
Msa1466730 MtrunA17_Chr6g0454331 41.538 130 69 2 1 130 356 478 2.49e-29 110
Msa1466730 MtrunA17_Chr7g0243681 41.045 134 71 1 3 128 344 477 2.54e-29 110
Msa1466730 MtrunA17_Chr5g0393591 39.850 133 58 4 1 132 326 437 2.56e-29 110
Msa1466730 MtrunA17_Chr3g0112771 46.154 130 59 3 1 130 329 447 2.62e-29 110
Msa1466730 MtrunA17_Chr7g0243781 40.000 140 74 2 1 130 336 475 3.09e-29 110
Msa1466730 MtrunA17_Chr7g0218821 39.062 128 72 2 1 128 327 448 3.27e-29 109
Msa1466730 MtrunA17_Chr6g0454121 40.000 130 71 2 1 130 356 478 3.75e-29 110
Msa1466730 MtrunA17_Chr6g0454401 43.089 123 63 1 1 123 358 473 4.21e-29 109
Msa1466730 MtrunA17_Chr8g0361371 43.200 125 67 2 6 127 344 467 4.48e-29 109
Msa1466730 MtrunA17_Chr8g0336331 43.089 123 63 2 1 123 354 469 4.58e-29 109
Msa1466730 MtrunA17_Chr3g0118701 41.667 132 66 2 1 130 360 482 4.66e-29 109
Msa1466730 MtrunA17_Chr4g0060511 38.971 136 75 2 1 128 350 485 5.37e-29 109
Msa1466730 MtrunA17_Chr7g0243851 41.538 130 69 1 6 128 311 440 5.73e-29 109
Msa1466730 MtrunA17_Chr6g0452771 43.089 123 63 2 1 123 357 472 8.73e-29 108
Msa1466730 MtrunA17_Chr8g0337381 44.800 125 62 3 3 126 3 121 9.79e-29 102
Msa1466730 MtrunA17_Chr2g0278711 42.308 130 69 2 1 130 353 476 1.07e-28 108
Msa1466730 MtrunA17_Chr6g0454151 40.000 130 71 2 1 130 355 477 1.17e-28 108
Msa1466730 MtrunA17_Chr3g0112761 44.715 123 62 2 1 123 326 442 1.27e-28 108
Msa1466730 MtrunA17_Chr6g0454371 41.463 123 65 2 1 123 48 163 1.59e-28 102
Msa1466730 MtrunA17_Chr6g0454351 42.276 123 64 2 1 123 342 457 1.59e-28 108
Msa1466730 MtrunA17_Chr1g0153451 45.455 121 63 2 3 123 339 456 1.74e-28 108
Msa1466730 MtrunA17_Chr6g0454141 40.650 123 66 2 1 123 357 472 1.82e-28 108
Msa1466730 MtrunA17_Chr6g0454221 43.902 123 62 2 1 123 108 223 1.89e-28 105
Msa1466730 MtrunA17_Chr6g0454291 41.538 130 69 2 1 130 354 476 2.13e-28 107
Msa1466730 MtrunA17_Chr7g0243711 38.462 130 73 1 6 128 185 314 2.33e-28 105
Msa1466730 MtrunA17_Chr7g0265111 42.254 142 73 2 1 133 377 518 2.45e-28 108
Msa1466730 MtrunA17_Chr6g0454201 40.000 130 71 2 1 130 358 480 2.58e-28 107
Msa1466730 MtrunA17_Chr4g0066261 39.286 140 77 2 1 132 344 483 2.79e-28 107
Msa1466730 MtrunA17_Chr6g0454181 42.149 121 63 2 3 123 359 472 3.01e-28 107
Msa1466730 MtrunA17_Chr1g0153461 44.355 124 66 2 3 126 88 208 3.67e-28 102
Msa1466730 MtrunA17_Chr6g0454321 41.379 116 61 2 1 116 355 463 5.40e-28 107
Msa1466730 MtrunA17_Chr6g0454341 39.231 130 72 2 1 130 355 477 5.72e-28 106
Msa1466730 MtrunA17_Chr5g0431421 36.765 136 77 3 1 130 316 448 5.75e-28 106
Msa1466730 MtrunA17_Chr7g0218831 38.583 127 72 2 1 127 316 436 5.80e-28 106
Msa1466730 MtrunA17_Chr7g0232391 42.975 121 66 2 3 123 341 458 6.64e-28 106
Msa1466730 MtrunA17_Chr7g0243951 39.098 133 74 1 3 128 349 481 7.11e-28 106
Msa1466730 MtrunA17_Chr6g0459311 42.857 126 66 3 3 126 346 467 7.75e-28 106
Msa1466730 MtrunA17_Chr8g0359821 41.463 123 65 2 1 123 355 470 7.83e-28 106
Msa1466730 MtrunA17_Chr4g0014061 41.176 136 72 2 1 128 335 470 8.31e-28 106
Msa1466730 MtrunA17_Chr8g0335161 43.089 123 64 3 6 126 344 462 1.06e-27 105
Msa1466730 MtrunA17_Chr6g0486251 41.935 124 70 2 3 126 339 460 1.19e-27 105
Msa1466730 MtrunA17_Chr6g0486201 41.935 124 70 2 3 126 339 460 1.19e-27 105
Msa1466730 MtrunA17_Chr4g0066281 40.000 140 76 2 1 132 329 468 1.34e-27 105
Msa1466730 MtrunA17_Chr3g0078841 39.837 123 67 2 1 123 355 470 1.55e-27 105
Msa1466730 MtrunA17_Chr7g0275681 41.727 139 72 3 1 130 342 480 1.79e-27 105
Msa1466730 MtrunA17_Chr7g0218791 40.625 128 67 3 1 128 324 442 1.98e-27 105
Msa1466730 MtrunA17_Chr8g0334831 43.651 126 66 3 6 127 351 475 2.34e-27 105
Msa1466730 MtrunA17_Chr6g0454191 42.276 123 64 2 1 123 358 473 2.50e-27 105
Msa1466730 MtrunA17_Chr4g0066201 38.971 136 75 3 1 128 337 472 3.64e-27 104
Msa1466730 MtrunA17_Chr6g0454171 40.000 130 71 2 1 130 187 309 3.75e-27 102
Msa1466730 MtrunA17_Chr5g0431401 36.496 137 78 3 1 131 316 449 4.19e-27 103
Msa1466730 MtrunA17_Chr8g0347281 44.915 118 62 2 6 123 351 465 4.32e-27 104
Msa1466730 MtrunA17_Chr8g0347271 44.915 118 62 2 6 123 352 466 4.34e-27 104
Msa1466730 MtrunA17_Chr5g0423981 40.650 123 66 2 1 123 322 437 4.51e-27 103
Msa1466730 MtrunA17_Chr8g0335141 42.975 121 67 2 6 126 346 464 6.15e-27 103
Msa1466730 MtrunA17_Chr6g0453961 41.463 123 65 2 1 123 367 482 7.41e-27 103
Msa1466730 MtrunA17_Chr6g0454211 40.000 130 71 2 1 130 644 766 7.42e-27 104
Msa1466730 MtrunA17_Chr6g0454211 63.415 41 15 0 1 41 196 236 1.72e-13 65.9
Msa1466730 MtrunA17_Chr4g0066131 39.416 137 76 2 3 132 340 476 8.60e-27 103
Msa1466730 MtrunA17_Chr4g0072761 43.307 127 66 2 1 127 329 449 9.87e-27 103
Msa1466730 MtrunA17_Chr4g0011051 36.170 141 81 2 1 132 349 489 1.04e-26 103
Msa1466730 MtrunA17_Chr8g0339461 44.628 121 64 2 6 126 350 467 1.36e-26 102
Msa1466730 MtrunA17_Chr8g0382021 39.850 133 78 2 1 132 359 490 1.45e-26 102
Msa1466730 MtrunA17_Chr8g0339451 43.651 126 68 2 6 131 342 464 2.04e-26 102
Msa1466730 MtrunA17_Chr6g0453951 38.462 130 73 2 1 130 404 526 2.83e-26 102
Msa1466730 MtrunA17_Chr2g0307961 43.902 123 64 3 6 128 349 466 2.84e-26 102
Msa1466730 MtrunA17_Chr8g0334851 43.220 118 64 2 6 123 348 462 3.63e-26 101
Msa1466730 MtrunA17_Chr7g0218841 37.795 127 73 2 1 127 317 437 3.81e-26 101
Msa1466730 MtrunA17_Chr1g0159551 40.157 127 75 1 6 132 336 461 4.77e-26 101
Msa1466730 MtrunA17_Chr6g0463861 35.971 139 82 2 1 132 337 475 5.74e-26 101
Msa1466730 MtrunA17_Chr5g0431371 35.075 134 84 2 1 131 316 449 7.14e-26 100
Msa1466730 MtrunA17_Chr3g0079731 40.625 128 73 3 1 127 352 477 8.52e-26 100
Msa1466730 MtrunA17_Chr1g0173121 40.157 127 75 1 6 132 339 464 8.87e-26 100
Msa1466730 MtrunA17_Chr7g0265051 37.143 140 80 3 1 132 347 486 9.02e-26 100
Msa1466730 MtrunA17_Chr7g0265101 36.429 140 81 3 1 132 349 488 1.07e-25 100
Msa1466730 MtrunA17_Chr4g0066221 39.286 140 77 3 1 132 343 482 2.38e-25 99.8
Msa1466730 MtrunA17_Chr7g0275511 41.129 124 70 2 3 126 351 471 2.60e-25 99.4
Msa1466730 MtrunA17_Chr7g0243861 41.353 133 71 1 3 128 353 485 2.64e-25 99.4
Msa1466730 MtrunA17_Chr4g0066171 37.500 136 77 3 1 128 339 474 2.80e-25 99.4
Msa1466730 MtrunA17_Chr5g0412111 38.583 127 70 2 1 127 340 458 2.95e-25 99.0
Msa1466730 MtrunA17_Chr7g0232411 42.373 118 65 2 6 123 344 458 3.15e-25 99.0
Msa1466730 MtrunA17_Chr6g0454261 38.462 130 73 2 1 130 357 479 3.35e-25 99.0
Msa1466730 MtrunA17_Chr2g0329111 41.481 135 70 3 6 133 350 482 3.52e-25 99.0
Msa1466730 MtrunA17_Chr8g0339441 42.149 121 67 2 6 126 308 425 3.73e-25 98.6
Msa1466730 MtrunA17_Chr5g0412131 38.760 129 67 2 1 127 348 466 4.23e-25 98.6
Msa1466730 MtrunA17_Chr6g0463851 35.252 139 83 2 1 132 346 484 4.25e-25 99.0
Msa1466730 MtrunA17_Chr5g0448521 37.313 134 75 2 1 128 335 465 4.43e-25 98.6
Msa1466730 MtrunA17_Chr7g0232401 42.735 117 64 2 3 119 343 456 4.87e-25 98.6
Msa1466730 MtrunA17_Chr4g0072771 40.157 127 70 2 1 127 342 462 8.31e-25 97.8
Msa1466730 MtrunA17_Chr8g0374971 35.000 140 83 2 1 132 343 482 1.05e-24 97.8
Msa1466730 MtrunA17_Chr8g0339631 43.802 121 64 2 6 126 348 464 1.34e-24 97.4
Msa1466730 MtrunA17_Chr5g0412101 38.760 129 67 2 1 127 349 467 1.38e-24 97.4
Msa1466730 MtrunA17_Chr6g0454271 36.923 130 75 2 1 130 164 286 1.59e-24 95.1
Msa1466730 MtrunA17_Chr7g0218311 38.571 140 78 3 1 132 346 485 1.65e-24 97.1
Msa1466730 MtrunA17_Chr4g0050341 39.370 127 70 2 1 127 368 487 2.00e-24 97.1
Msa1466730 MtrunA17_Chr4g0066151 37.681 138 78 3 1 130 342 479 2.09e-24 97.1
Msa1466730 MtrunA17_Chr4g0044501 36.232 138 71 4 1 128 343 473 2.71e-24 96.7
Msa1466730 MtrunA17_Chr7g0243911 41.667 108 56 1 3 103 96 203 3.06e-24 92.8
Msa1466730 MtrunA17_Chr2g0294931 36.879 141 81 2 1 133 344 484 3.29e-24 96.3
Msa1466730 MtrunA17_Chr7g0265151 36.364 143 79 4 1 132 344 485 3.46e-24 96.3
Msa1466730 MtrunA17_Chr8g0374901 36.429 140 81 2 1 132 341 480 3.73e-24 96.3
Msa1466730 MtrunA17_Chr8g0336261 52.000 75 36 0 1 75 48 122 4.34e-24 90.1
Msa1466730 MtrunA17_Chr8g0374941 36.170 141 82 2 1 133 1280 1420 4.46e-24 96.3
Msa1466730 MtrunA17_Chr8g0374941 35.484 124 72 2 1 116 342 465 3.92e-20 85.1
Msa1466730 MtrunA17_Chr8g0374941 34.211 114 68 1 6 112 813 926 1.29e-17 77.8
Msa1466730 MtrunA17_Chr3g0118661 40.945 127 68 1 1 127 357 476 7.91e-24 95.1
Msa1466730 MtrunA17_Chr8g0355011 39.669 121 66 2 3 123 241 354 8.10e-24 94.4
Msa1466730 MtrunA17_Chr4g0044521 40.000 130 68 2 6 127 336 463 1.00e-23 95.1
Msa1466730 MtrunA17_Chr3g0079711 40.164 122 71 2 6 127 66 185 1.24e-23 90.5
Msa1466730 MtrunA17_Chr4g0044511 37.589 141 70 4 1 130 371 504 1.37e-23 94.7
Msa1466730 MtrunA17_Chr6g0454231 37.405 131 74 3 1 130 95 218 1.43e-23 94.4
Msa1466730 MtrunA17_Chr3g0092641 39.695 131 70 3 1 130 355 477 1.53e-23 94.4
Msa1466730 MtrunA17_Chr5g0410941 39.286 140 77 3 1 132 352 491 1.54e-23 94.4
Msa1466730 MtrunA17_Chr4g0032331 42.857 119 59 3 1 119 329 438 2.04e-23 94.0
Msa1466730 MtrunA17_Chr5g0428081 38.571 140 78 3 1 132 342 481 2.65e-23 94.0
Msa1466730 MtrunA17_Chr6g0462521 41.228 114 64 2 6 119 329 439 3.65e-23 93.2
Msa1466730 MtrunA17_Chr8g0374931 35.714 140 82 2 1 132 344 483 4.16e-23 93.2
Msa1466730 MtrunA17_Chr8g0366391 36.232 138 71 4 1 128 345 475 4.90e-23 93.2
Msa1466730 MtrunA17_Chr2g0294921 35.000 140 83 2 1 132 493 632 5.04e-23 93.2
Msa1466730 MtrunA17_Chr5g0419761 37.857 140 77 4 1 130 346 485 7.01e-23 92.8
Msa1466730 MtrunA17_Chr5g0442581 36.567 134 76 2 1 128 344 474 7.01e-23 92.8
Msa1466730 MtrunA17_Chr7g0265041 38.732 142 77 3 1 132 349 490 7.32e-23 92.8
Msa1466730 MtrunA17_Chr5g0440421 38.583 127 72 2 5 127 366 490 7.33e-23 92.4
Msa1466730 MtrunA17_Chr6g0462571 37.984 129 76 3 1 128 334 459 8.67e-23 92.4
Msa1466730 MtrunA17_Chr6g0462531 40.000 120 68 3 1 119 337 453 1.48e-22 91.7
Msa1466730 MtrunA17_Chr5g0403641 39.831 118 70 1 6 123 379 495 1.72e-22 91.7
Msa1466730 MtrunA17_Chr5g0442521 35.821 134 77 3 1 128 343 473 1.80e-22 91.3
Msa1466730 MtrunA17_Chr8g0361411 41.538 130 66 3 3 132 332 451 1.87e-22 91.3
Msa1466730 MtrunA17_Chr8g0339601 42.149 121 67 2 6 126 209 326 2.38e-22 90.1
Msa1466730 MtrunA17_Chr8g0334861 41.880 117 65 2 3 119 339 452 3.03e-22 90.9
Msa1466730 MtrunA17_Chr6g0462541 37.984 129 76 3 1 128 336 461 3.31e-22 90.9
Msa1466730 MtrunA17_Chr5g0426431 40.458 131 69 3 1 130 355 477 3.43e-22 90.5
Msa1466730 MtrunA17_Chr5g0429711 36.296 135 80 3 1 133 334 464 4.15e-22 90.5
Msa1466730 MtrunA17_Chr8g0373301 40.678 118 67 2 6 123 345 459 4.90e-22 90.1
Msa1466730 MtrunA17_Chr8g0350881 34.058 138 84 1 3 133 346 483 5.17e-22 90.1
Msa1466730 MtrunA17_Chr5g0442561 35.821 134 77 3 1 128 340 470 5.23e-22 90.1
Msa1466730 MtrunA17_Chr7g0232311 41.525 118 66 2 6 123 342 456 8.99e-22 89.4
Msa1466730 MtrunA17_Chr7g0243761 39.062 128 52 3 3 128 349 452 1.15e-21 89.4
Msa1466730 MtrunA17_Chr7g0232341 42.609 115 62 3 6 119 344 455 1.33e-21 89.0
Msa1466730 MtrunA17_Chr3g0118751 40.678 118 62 3 10 127 332 441 1.45e-21 89.0
Msa1466730 MtrunA17_Chr1g0165701 36.434 129 76 2 6 128 353 481 1.46e-21 89.0
Msa1466730 MtrunA17_Chr6g0462551 36.434 129 78 3 1 128 337 462 1.78e-21 88.6
Msa1466730 MtrunA17_Chr7g0232331 41.739 115 62 3 6 118 344 455 1.86e-21 88.6
Msa1466730 MtrunA17_Chr5g0426401 40.458 131 69 3 1 130 188 310 2.33e-21 87.0
Msa1466730 MtrunA17_Chr8g0355221 35.659 129 77 2 6 128 356 484 2.50e-21 88.2
Msa1466730 MtrunA17_Chr5g0442541 35.075 134 78 2 1 128 333 463 5.79e-21 87.0
Msa1466730 MtrunA17_Chr4g0066141 35.211 142 72 3 1 128 214 349 8.73e-21 85.9
Msa1466730 MtrunA17_Chr5g0416741 35.156 128 77 2 6 127 353 480 1.13e-20 86.3
Msa1466730 MtrunA17_Chr5g0442491 32.836 134 81 2 1 128 342 472 1.83e-20 85.9
Msa1466730 MtrunA17_Chr5g0442601 35.821 134 77 4 1 128 743 873 2.03e-20 85.9
Msa1466730 MtrunA17_Chr5g0442601 43.284 67 33 1 1 62 270 336 2.01e-15 71.6
Msa1466730 MtrunA17_Chr5g0429681 40.496 121 64 4 1 119 374 488 5.18e-20 84.7
Msa1466730 MtrunA17_Chr2g0302961 34.328 134 82 3 1 132 338 467 6.86e-20 84.3
Msa1466730 MtrunA17_Chr2g0302991 32.836 134 84 4 1 132 335 464 1.63e-19 83.2
Msa1466730 MtrunA17_Chr5g0442511 32.090 134 82 3 1 128 361 491 2.60e-19 82.4
Msa1466730 MtrunA17_Chr6g0463891 34.400 125 75 1 6 123 353 477 2.88e-19 82.4
Msa1466730 MtrunA17_Chr7g0243611 51.429 70 34 0 3 72 210 279 1.35e-18 79.3
Msa1466730 MtrunA17_Chr5g0409591 40.385 104 55 3 1 103 359 456 1.85e-18 80.1
Msa1466730 MtrunA17_Chr8g0370941 36.885 122 72 3 5 123 362 481 4.47e-18 79.0
Msa1466730 MtrunA17_Chr2g0294941 33.333 123 74 2 1 115 242 364 7.31e-18 78.2
Msa1466730 MtrunA17_Chr5g0420801 38.281 128 73 4 1 127 333 455 8.21e-18 78.2
Msa1466730 MtrunA17_Chr2g0283041 39.604 101 59 2 6 105 332 431 1.44e-17 77.4
Msa1466730 MtrunA17_Chr5g0401851 34.677 124 75 2 6 123 353 476 1.48e-17 77.4
Msa1466730 MtrunA17_Chr4g0042891 37.879 132 69 4 1 127 339 462 2.88e-17 76.6
Msa1466730 MtrunA17_Chr5g0431431 41.573 89 45 1 1 89 266 347 3.85e-17 75.9
Msa1466730 MtrunA17_Chr4g0040691 36.538 104 63 2 6 108 335 436 4.49e-17 76.3
Msa1466730 MtrunA17_Chr5g0448551 47.761 67 35 0 1 67 328 394 7.63e-17 75.5
Msa1466730 MtrunA17_Chr4g0040711 37.500 104 62 2 6 108 335 436 2.45e-16 73.9
Msa1466730 MtrunA17_Chr2g0319761 36.190 105 64 3 6 108 333 436 3.17e-16 73.6
Msa1466730 MtrunA17_Chr4g0029131 37.143 105 63 2 6 108 334 437 3.97e-16 73.6
Msa1466730 MtrunA17_Chr2g0319791 37.143 105 63 3 6 108 333 436 4.67e-16 73.2
Msa1466730 MtrunA17_Chr8g0369341 37.903 124 71 4 1 123 343 461 4.94e-16 73.2
Msa1466730 MtrunA17_Chr7g0243731 44.286 70 39 0 3 72 10 79 1.12e-15 67.0
Msa1466730 MtrunA17_Chr2g0319751 37.143 105 63 3 6 108 810 913 1.33e-15 72.0
Msa1466730 MtrunA17_Chr2g0319751 36.190 105 64 3 6 108 309 412 1.94e-15 71.6
Msa1466730 MtrunA17_Chr1g0196851 34.286 105 66 2 6 108 374 477 2.19e-15 71.2
Msa1466730 MtrunA17_Chr4g0044481 49.254 67 33 1 1 66 333 399 2.68e-15 71.2
Msa1466730 MtrunA17_Chr5g0416821 33.594 128 65 3 6 127 357 470 3.89e-15 70.5
Msa1466730 MtrunA17_Chr4g0042931 35.766 137 65 5 1 127 337 460 1.22e-14 69.3
Msa1466730 MtrunA17_Chr8g0357361 42.857 70 39 1 1 69 185 254 1.68e-14 67.8
Msa1466730 MtrunA17_Chr7g0241781 35.156 128 68 5 6 130 310 425 2.28e-14 68.6
Msa1466730 MtrunA17_Chr4g0029151 36.190 105 64 2 6 108 342 445 3.12e-14 68.2
Msa1466730 MtrunA17_Chr6g0482061 36.134 119 70 3 3 120 356 469 3.12e-14 68.2
Msa1466730 MtrunA17_Chr2g0319731 35.238 105 65 3 6 108 350 453 5.61e-14 67.4
Msa1466730 MtrunA17_Chr7g0231631 33.594 128 65 3 6 127 143 256 7.08e-14 66.2
Msa1466730 MtrunA17_Chr7g0243811 43.056 72 40 1 1 71 311 382 1.95e-13 65.9
Msa1466730 MtrunA17_Chr6g0454391 43.333 60 34 0 16 75 11 70 2.47e-13 62.4
Msa1466730 MtrunA17_Chr7g0241801 38.144 97 55 3 6 102 310 401 3.76e-13 65.1
Msa1466730 MtrunA17_Chr6g0454251 65.854 41 14 0 1 41 354 394 4.02e-13 64.7
Msa1466730 MtrunA17_Chr2g0319801 35.238 105 65 3 6 108 333 436 5.74e-13 64.3
Msa1466730 MtrunA17_Chr8g0336321 38.384 99 57 2 6 104 345 439 3.85e-12 62.0
Msa1466730 MtrunA17_Chr8g0336251 38.384 99 57 2 6 104 345 439 3.89e-12 62.0
Msa1466730 MtrunA17_Chr8g0367221 35.577 104 64 3 5 108 1132 1232 4.97e-12 62.0
Msa1466730 MtrunA17_Chr8g0367221 33.981 103 65 3 6 108 1623 1722 1.80e-11 60.5
Msa1466730 MtrunA17_Chr8g0367221 33.010 103 66 3 6 108 346 445 7.81e-11 58.5
Msa1466730 MtrunA17_Chr4g0069611 35.714 98 60 3 6 103 340 434 5.33e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466730 AT1G05560.1 66.923 130 39 2 1 130 326 451 1.96e-54 177
Msa1466730 AT1G05560.2 66.923 130 39 2 1 130 376 501 2.22e-54 178
Msa1466730 AT4G15550.1 63.077 130 44 2 1 128 344 471 6.73e-54 176
Msa1466730 AT4G14090.1 61.719 128 47 1 1 128 328 453 8.46e-51 167
Msa1466730 AT1G05530.1 62.308 130 45 2 1 130 329 454 2.35e-50 166
Msa1466730 AT1G05680.1 61.417 127 46 2 1 127 326 449 5.19e-48 160
Msa1466730 AT2G31790.1 58.268 127 50 2 1 127 330 453 8.17e-48 159
Msa1466730 AT1G05675.1 58.268 127 50 2 1 127 326 449 1.25e-45 154
Msa1466730 AT2G31750.2 52.985 134 60 2 1 133 326 457 1.66e-45 154
Msa1466730 AT2G31750.1 52.632 133 60 2 1 132 326 456 1.66e-45 153
Msa1466730 AT2G43820.1 52.344 128 59 2 3 130 321 446 1.60e-44 150
Msa1466730 AT1G24100.1 53.077 130 59 2 3 132 333 460 4.79e-44 150
Msa1466730 AT2G43840.1 51.562 128 60 2 3 130 321 446 5.89e-44 149
Msa1466730 AT2G43840.2 51.562 128 60 2 3 130 321 446 5.89e-44 149
Msa1466730 AT4G15500.1 51.938 129 59 2 1 128 334 460 3.17e-41 142
Msa1466730 AT3G21560.1 54.688 128 57 1 1 128 344 470 2.63e-40 140
Msa1466730 AT4G15480.1 54.264 129 56 2 1 128 350 476 7.61e-40 139
Msa1466730 AT4G15490.1 51.938 129 59 2 1 128 338 464 2.13e-39 137
Msa1466730 AT2G23250.1 44.615 130 70 2 1 130 308 435 2.32e-35 126
Msa1466730 AT2G23260.1 44.275 131 71 2 1 131 326 454 1.36e-34 124
Msa1466730 AT3G46660.1 46.154 130 63 2 1 130 333 455 2.52e-30 113
Msa1466730 AT2G36970.1 43.182 132 66 3 1 130 346 470 6.87e-30 112
Msa1466730 AT2G30150.1 39.098 133 80 1 1 132 306 438 9.18e-30 111
Msa1466730 AT2G30150.2 39.098 133 80 1 1 132 322 454 1.28e-29 111
Msa1466730 AT3G11340.1 44.094 127 64 3 1 127 322 441 1.40e-29 111
Msa1466730 AT3G46670.1 45.669 127 62 2 1 127 326 445 1.49e-29 111
Msa1466730 AT2G30140.2 38.806 134 81 1 1 133 320 453 2.91e-28 107
Msa1466730 AT2G30140.1 38.806 134 81 1 1 133 321 454 3.12e-28 107
Msa1466730 AT3G55700.1 45.385 130 64 2 1 130 328 450 4.62e-28 107
Msa1466730 AT5G38040.1 44.882 127 63 2 1 127 327 446 1.16e-27 105
Msa1466730 AT1G22340.1 42.636 129 66 3 3 130 360 481 1.34e-27 106
Msa1466730 AT5G17050.1 41.538 130 70 2 1 130 333 456 1.59e-27 105
Msa1466730 AT2G36760.1 42.222 135 70 2 6 132 356 490 2.26e-27 105
Msa1466730 AT2G36790.1 39.716 141 76 2 1 132 349 489 2.30e-27 105
Msa1466730 AT2G36800.1 42.446 139 71 4 1 130 349 487 2.92e-27 105
Msa1466730 AT1G78270.1 43.939 132 65 4 1 130 356 480 5.42e-27 104
Msa1466730 AT2G36780.1 42.553 141 72 4 1 132 350 490 5.85e-27 104
Msa1466730 AT5G05860.1 40.769 130 70 2 1 130 325 447 6.66e-27 103
Msa1466730 AT1G22380.1 43.411 129 65 3 3 130 359 480 7.73e-27 103
Msa1466730 AT5G05870.1 41.221 131 70 2 1 131 332 455 1.01e-26 103
Msa1466730 AT5G59580.1 41.538 130 69 2 1 130 325 447 1.04e-26 103
Msa1466730 AT2G36770.1 41.135 141 74 3 1 132 350 490 1.12e-26 103
Msa1466730 AT5G59590.1 40.769 130 70 1 1 130 327 449 1.20e-26 103
Msa1466730 AT2G36750.1 41.304 138 73 3 3 132 348 485 1.53e-26 103
Msa1466730 AT1G22360.1 41.860 129 67 3 3 130 356 477 2.17e-26 102
Msa1466730 AT4G01070.1 43.802 121 65 2 3 123 343 460 7.25e-26 101
Msa1466730 AT5G05880.1 39.695 131 72 2 1 131 326 449 1.05e-25 100
Msa1466730 AT2G15490.3 40.458 131 74 3 1 128 346 475 1.13e-25 100
Msa1466730 AT2G15490.1 40.458 131 74 3 1 128 349 478 1.23e-25 100
Msa1466730 AT2G28080.1 42.308 130 68 3 1 130 349 471 2.35e-25 99.8
Msa1466730 AT5G17040.2 38.636 132 75 2 1 132 214 339 2.80e-25 98.2
Msa1466730 AT5G14860.1 43.382 136 73 4 1 133 344 478 3.19e-25 99.8
Msa1466730 AT1G01420.1 41.525 118 65 2 6 123 346 459 3.67e-25 99.4
Msa1466730 AT1G01420.2 41.525 118 65 2 6 123 349 462 4.07e-25 99.4
Msa1466730 AT5G17040.1 38.636 132 75 2 1 132 316 441 4.59e-25 99.0
Msa1466730 AT5G38010.1 41.732 127 67 2 1 127 331 450 4.72e-25 99.0
Msa1466730 AT1G22360.2 40.310 129 57 3 3 130 356 465 4.96e-25 99.0
Msa1466730 AT3G46680.1 40.625 128 69 2 1 128 327 447 5.31e-25 98.6
Msa1466730 AT3G53160.1 36.170 141 77 3 1 130 344 482 5.74e-25 99.0
Msa1466730 AT3G55710.1 41.538 130 69 2 1 130 332 454 7.57e-25 98.6
Msa1466730 AT1G22370.1 42.105 133 61 3 3 130 184 305 1.00e-24 96.3
Msa1466730 AT2G15480.1 39.844 128 74 2 3 128 352 478 1.35e-24 97.8
Msa1466730 AT3G46700.1 42.017 119 62 2 1 119 322 433 1.73e-24 97.4
Msa1466730 AT5G05900.1 39.062 128 71 2 1 128 325 445 1.95e-24 97.1
Msa1466730 AT2G16890.2 42.657 143 64 5 1 133 336 470 2.09e-24 97.4
Msa1466730 AT5G17030.1 39.231 130 73 2 1 130 332 455 2.26e-24 97.1
Msa1466730 AT1G22400.1 41.935 124 64 3 3 125 360 476 2.58e-24 97.1
Msa1466730 AT3G02100.1 39.370 127 72 2 2 128 336 457 2.77e-24 96.7
Msa1466730 AT5G05890.1 37.405 131 75 2 1 131 330 453 3.61e-24 96.3
Msa1466730 AT1G22370.2 42.105 133 61 3 3 130 354 475 4.83e-24 96.3
Msa1466730 AT3G46650.1 41.270 126 67 2 1 126 310 428 7.65e-24 95.5
Msa1466730 AT3G50740.1 38.583 127 75 3 3 128 347 471 7.86e-24 95.5
Msa1466730 AT5G26310.1 42.276 123 65 4 3 123 342 460 1.34e-23 95.1
Msa1466730 AT2G15480.2 36.496 137 76 2 3 128 352 488 1.44e-23 95.1
Msa1466730 AT1G30530.1 37.121 132 77 2 1 132 327 452 2.48e-23 94.0
Msa1466730 AT4G36770.1 43.519 108 57 2 6 113 343 446 5.03e-23 93.2
Msa1466730 AT1G07250.1 37.209 129 76 3 1 127 344 469 1.67e-22 92.0
Msa1466730 AT3G46690.1 43.902 123 62 2 1 123 327 442 2.72e-22 91.3
Msa1466730 AT1G10400.1 40.800 125 70 3 5 128 339 460 5.07e-22 90.5
Msa1466730 AT3G21750.1 36.842 133 81 1 1 130 336 468 5.99e-22 90.5
Msa1466730 AT3G46720.1 42.276 123 64 2 1 123 318 433 7.57e-22 90.1
Msa1466730 AT5G12890.1 41.270 126 70 2 5 128 356 479 7.91e-22 90.1
Msa1466730 AT2G29740.1 38.519 135 72 5 1 130 346 474 1.98e-21 89.0
Msa1466730 AT2G29730.1 35.659 129 79 2 1 127 333 459 2.56e-21 88.6
Msa1466730 AT4G15280.2 37.681 138 73 3 1 130 373 505 4.64e-21 87.8
Msa1466730 AT3G21760.1 34.532 139 82 3 1 133 348 483 4.65e-21 87.8
Msa1466730 AT4G34131.1 39.850 133 72 4 1 128 348 477 9.35e-21 87.0
Msa1466730 AT4G34138.1 44.355 124 61 4 1 120 349 468 1.01e-20 87.0
Msa1466730 AT1G07260.1 39.695 131 72 4 1 128 343 469 1.06e-20 87.0
Msa1466730 AT2G29710.1 34.848 132 82 2 1 130 333 462 1.68e-20 86.3
Msa1466730 AT3G22250.1 44.660 103 44 2 1 100 343 435 4.65e-20 85.1
Msa1466730 AT1G01390.1 42.276 123 66 3 6 127 346 464 4.71e-20 85.1
Msa1466730 AT1G01390.2 42.276 123 66 3 6 127 363 481 4.80e-20 85.1
Msa1466730 AT3G16520.3 36.719 128 74 3 1 127 335 456 5.62e-20 84.7
Msa1466730 AT4G15260.1 36.691 139 74 3 1 130 221 354 6.44e-20 84.0
Msa1466730 AT5G66690.1 41.739 115 63 3 3 117 342 452 6.78e-20 84.7
Msa1466730 AT3G21790.1 35.915 142 77 4 1 133 345 481 6.93e-20 84.7
Msa1466730 AT4G15280.1 37.681 138 73 3 1 130 341 473 7.15e-20 84.3
Msa1466730 AT3G21800.1 34.532 139 81 3 1 132 342 477 1.09e-19 84.0
Msa1466730 AT2G18570.1 36.364 121 77 0 3 123 339 459 1.45e-19 83.6
Msa1466730 AT2G18560.1 34.711 121 79 0 3 123 249 369 2.81e-19 82.4
Msa1466730 AT3G53150.1 34.899 149 78 5 1 130 361 509 3.69e-19 82.4
Msa1466730 AT1G73880.1 37.302 126 72 3 6 130 347 466 6.22e-19 82.0
Msa1466730 AT1G06000.1 39.831 118 66 2 6 123 314 426 9.17e-19 81.3
Msa1466730 AT2G26480.1 35.385 130 77 3 1 130 323 445 9.57e-19 81.3
Msa1466730 AT3G21780.1 33.333 141 81 3 1 133 336 471 7.49e-18 79.0
Msa1466730 AT3G16520.2 40.659 91 51 2 1 90 335 423 9.84e-18 78.6
Msa1466730 AT3G16520.1 40.659 91 51 2 1 90 335 423 9.93e-18 78.6
Msa1466730 AT2G29750.1 35.461 141 77 6 1 133 346 480 4.55e-17 76.6
Msa1466730 AT2G16890.3 48.837 86 40 2 1 85 336 418 7.36e-17 75.9
Msa1466730 AT1G07240.1 34.646 127 70 4 1 119 343 464 2.59e-16 74.3
Msa1466730 AT4G27570.1 34.646 127 80 2 6 131 324 448 2.73e-15 71.6
Msa1466730 AT5G53990.1 37.143 105 63 2 5 108 317 419 4.05e-15 70.9
Msa1466730 AT4G27560.1 33.594 128 82 2 5 131 323 448 4.81e-15 70.9
Msa1466730 AT5G03490.1 35.714 126 75 4 1 124 335 456 6.49e-15 70.5
Msa1466730 AT1G64910.1 36.190 105 64 2 5 108 317 419 1.36e-14 69.3
Msa1466730 AT1G50580.1 37.864 103 61 2 6 107 319 419 2.00e-14 68.9
Msa1466730 AT3G29630.2 38.462 104 60 3 6 107 294 395 2.00e-14 68.9
Msa1466730 AT3G29630.1 38.462 104 60 3 6 107 320 421 2.38e-14 68.9
Msa1466730 AT4G34135.1 40.299 134 72 3 1 128 348 479 5.76e-14 67.8
Msa1466730 AT5G54010.1 36.283 113 68 3 6 116 324 434 8.58e-14 67.0
Msa1466730 AT1G51210.1 38.095 105 60 3 1 104 331 431 1.53e-13 66.6
Msa1466730 AT5G49690.1 34.884 129 73 5 4 132 332 449 2.84e-13 65.9
Msa1466730 AT5G65550.1 36.735 98 59 3 5 102 340 434 2.20e-12 63.2
Msa1466730 AT5G54060.1 37.255 102 61 2 6 106 343 442 2.06e-11 60.5
Msa1466730 AT5G37950.2 58.537 41 17 0 1 41 297 337 3.35e-11 59.7
Msa1466730 AT5G37950.1 58.537 41 17 0 1 41 303 343 3.55e-11 59.7
Msa1466730 AT4G09500.1 31.731 104 68 2 6 108 293 394 4.17e-11 59.3
Msa1466730 AT4G09500.2 31.731 104 68 2 6 108 318 419 4.19e-11 59.3
Msa1466730 AT1G64920.1 32.990 97 62 2 12 107 328 422 5.86e-11 58.9

Find 40 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTAGAAAGCTTGGTAAA+AGG 0.253553 tig0048662:-878 Msa1466730:CDS
ATTGAAGATGTGTGGAAGAT+AGG 0.320602 tig0048662:-800 Msa1466730:CDS
GAGGTGTTTGGAGGTGGTGA+TGG 0.324782 tig0048662:-720 Msa1466730:CDS
CTTTAGAAAGCTTGGTAAAA+GGG 0.355065 tig0048662:-877 Msa1466730:CDS
TTGGAGGTGGTGATGGGGAG+TGG 0.358971 tig0048662:-713 Msa1466730:CDS
CTTGGTAAAAGGGGTTCCTT+TGG 0.384785 tig0048662:-867 Msa1466730:CDS
AGGTGTTTGGAGGTGGTGAT+GGG 0.396120 tig0048662:-719 Msa1466730:CDS
TGAGAAGGAATGCAAAGAAA+TGG 0.404663 tig0048662:-673 Msa1466730:CDS
TTGAAGATGTGTGGAAGATA+GGG 0.405179 tig0048662:-799 Msa1466730:CDS
GTGATGGGGAGTGGAGAGAA+AGG 0.415532 tig0048662:-704 Msa1466730:CDS
GGTTCTTTCACATCCTTCGT+TGG 0.431554 tig0048662:-933 Msa1466730:CDS
GGTAAAAGGGGTTCCTTTGG+TGG 0.444766 tig0048662:-864 Msa1466730:CDS
GTTCTTTCACATCCTTCGTT+GGG 0.453777 tig0048662:-932 Msa1466730:CDS
AGTGAAATGGTGTTCTCAAA+TGG 0.454148 tig0048662:-957 Msa1466730:CDS
GGGTGAAATTAGGAGGTGTT+TGG 0.461101 tig0048662:-732 Msa1466730:CDS
TGAAATTAGGAGGTGTTTGG+AGG 0.507181 tig0048662:-729 Msa1466730:CDS
GAATTCGACTTTAGAAAGCT+TGG 0.519015 tig0048662:-885 Msa1466730:CDS
CTTTGGTGGCGTTTCCACAA+TGG 0.523574 tig0048662:-850 Msa1466730:CDS
GGTGTTTGGAGGTGGTGATG+GGG 0.525531 tig0048662:-718 Msa1466730:CDS
AGAAGGGGAAGATAGTGAAA+TGG 0.533762 tig0048662:-970 None:intergenic
AATTAGGAGGTGTTTGGAGG+TGG 0.535375 tig0048662:-726 Msa1466730:CDS
GTTAGCTAGAGAAGCAGTGA+AGG 0.539109 tig0048662:-645 Msa1466730:CDS
GATGAAGAAGTGAATGAAGA+TGG 0.540150 tig0048662:-767 Msa1466730:CDS
TTTAGAAAGCTTGGTAAAAG+GGG 0.554356 tig0048662:-876 Msa1466730:CDS
AGAAAGGAGAGGAATTGAGA+AGG 0.562039 tig0048662:-688 Msa1466730:CDS
GCTAGAGAAGCAGTGAAGGA+AGG 0.564576 tig0048662:-641 Msa1466730:CDS
GGGGAGTGGAGAGAAAGGAG+AGG 0.577748 tig0048662:-699 Msa1466730:CDS
GTCATCTGATCTGTCCATTG+TGG 0.584546 tig0048662:+833 Msa1466730:intergenic
TGAAGATGTGTGGAAGATAG+GGG 0.590642 tig0048662:-798 Msa1466730:CDS
AAGGAATGCAAAGAAATGGA+AGG 0.597027 tig0048662:-669 Msa1466730:CDS
CAAAGTTAATTGAAGATGTG+TGG 0.600584 tig0048662:-808 Msa1466730:CDS
GTGGAAGATAGGGGTAAGAG+TGG 0.605433 tig0048662:-789 Msa1466730:CDS
CATTGTGGAAACGCCACCAA+AGG 0.612026 tig0048662:+848 Msa1466730:intergenic
ATGAAGATGGAATTGTGAGA+GGG 0.621086 tig0048662:-754 Msa1466730:CDS
GCTCTTCAGAAAAGAATCTG+AGG 0.621500 tig0048662:-616 Msa1466730:CDS
AGAGAAGCAGTGAAGGAAGG+TGG 0.634678 tig0048662:-638 Msa1466730:CDS
GAAATGGTGTTCTCAAATGG+AGG 0.638020 tig0048662:-954 Msa1466730:CDS
TGAAGATGGAATTGTGAGAG+GGG 0.661648 tig0048662:-753 Msa1466730:CDS
AATGAAGATGGAATTGTGAG+AGG 0.670047 tig0048662:-755 Msa1466730:CDS
GAAGATGGAATTGTGAGAGG+GGG 0.698098 tig0048662:-752 Msa1466730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACTTTAGAAAGCTTGGTAAA+AGG - tig0048662:670-689 Msa1466730:CDS 30.0%
! CTTTAGAAAGCTTGGTAAAA+GGG - tig0048662:671-690 Msa1466730:CDS 30.0%
TTTAGAAAGCTTGGTAAAAG+GGG - tig0048662:672-691 Msa1466730:CDS 30.0%
CAAAGTTAATTGAAGATGTG+TGG - tig0048662:740-759 Msa1466730:CDS 30.0%
!!! AAAGAATCTGAGGAGTTTTT+TGG - tig0048662:942-961 Msa1466730:CDS 30.0%
AGTGAAATGGTGTTCTCAAA+TGG - tig0048662:591-610 Msa1466730:CDS 35.0%
! GAATTCGACTTTAGAAAGCT+TGG - tig0048662:663-682 Msa1466730:CDS 35.0%
ATTGAAGATGTGTGGAAGAT+AGG - tig0048662:748-767 Msa1466730:CDS 35.0%
TTGAAGATGTGTGGAAGATA+GGG - tig0048662:749-768 Msa1466730:CDS 35.0%
GATGAAGAAGTGAATGAAGA+TGG - tig0048662:781-800 Msa1466730:CDS 35.0%
AATGAAGATGGAATTGTGAG+AGG - tig0048662:793-812 Msa1466730:CDS 35.0%
ATGAAGATGGAATTGTGAGA+GGG - tig0048662:794-813 Msa1466730:CDS 35.0%
TGAGAAGGAATGCAAAGAAA+TGG - tig0048662:875-894 Msa1466730:CDS 35.0%
AAGGAATGCAAAGAAATGGA+AGG - tig0048662:879-898 Msa1466730:CDS 35.0%
!!! AATCTGAGGAGTTTTTTGGA+TGG - tig0048662:946-965 Msa1466730:CDS 35.0%
!!! ATCTGAGGAGTTTTTTGGAT+GGG - tig0048662:947-966 Msa1466730:CDS 35.0%
GAAATGGTGTTCTCAAATGG+AGG - tig0048662:594-613 Msa1466730:CDS 40.0%
GTTCTTTCACATCCTTCGTT+GGG - tig0048662:616-635 Msa1466730:CDS 40.0%
GTCAAAAAACAACCCAACGA+AGG + tig0048662:631-650 Msa1466730:intergenic 40.0%
!!! GGTTGTTTTTTGACACACTG+TGG - tig0048662:637-656 Msa1466730:CDS 40.0%
!!! GTTTTTTGACACACTGTGGT+TGG - tig0048662:641-660 Msa1466730:CDS 40.0%
TGAAGATGTGTGGAAGATAG+GGG - tig0048662:750-769 Msa1466730:CDS 40.0%
TGAAGATGGAATTGTGAGAG+GGG - tig0048662:795-814 Msa1466730:CDS 40.0%
!! TGAAATTAGGAGGTGTTTGG+AGG - tig0048662:819-838 Msa1466730:CDS 40.0%
AGAAAGGAGAGGAATTGAGA+AGG - tig0048662:860-879 Msa1466730:CDS 40.0%
GCTCTTCAGAAAAGAATCTG+AGG - tig0048662:932-951 Msa1466730:CDS 40.0%
!!! TCTGAGGAGTTTTTTGGATG+GGG - tig0048662:948-967 Msa1466730:CDS 40.0%
GGTTCTTTCACATCCTTCGT+TGG - tig0048662:615-634 Msa1466730:CDS 45.0%
CTTGGTAAAAGGGGTTCCTT+TGG - tig0048662:681-700 Msa1466730:CDS 45.0%
GTCATCTGATCTGTCCATTG+TGG + tig0048662:715-734 Msa1466730:intergenic 45.0%
GAAGATGGAATTGTGAGAGG+GGG - tig0048662:796-815 Msa1466730:CDS 45.0%
TTGTGAGAGGGGGTGAAATT+AGG - tig0048662:806-825 Msa1466730:CDS 45.0%
!! GGGTGAAATTAGGAGGTGTT+TGG - tig0048662:816-835 Msa1466730:CDS 45.0%
!! AATTAGGAGGTGTTTGGAGG+TGG - tig0048662:822-841 Msa1466730:CDS 45.0%
GTTAGCTAGAGAAGCAGTGA+AGG - tig0048662:903-922 Msa1466730:CDS 45.0%
GGTAAAAGGGGTTCCTTTGG+TGG - tig0048662:684-703 Msa1466730:CDS 50.0%
CATTGTGGAAACGCCACCAA+AGG + tig0048662:700-719 Msa1466730:intergenic 50.0%
!! CTTTGGTGGCGTTTCCACAA+TGG - tig0048662:698-717 Msa1466730:CDS 50.0%
GTGGAAGATAGGGGTAAGAG+TGG - tig0048662:759-778 Msa1466730:CDS 50.0%
TGAGAGGGGGTGAAATTAGG+AGG - tig0048662:809-828 Msa1466730:CDS 50.0%
AGGTGTTTGGAGGTGGTGAT+GGG - tig0048662:829-848 Msa1466730:CDS 50.0%
GCTAGAGAAGCAGTGAAGGA+AGG - tig0048662:907-926 Msa1466730:CDS 50.0%
AGAGAAGCAGTGAAGGAAGG+TGG - tig0048662:910-929 Msa1466730:CDS 50.0%
! GAGGTGTTTGGAGGTGGTGA+TGG - tig0048662:828-847 Msa1466730:CDS 55.0%
! GGTGTTTGGAGGTGGTGATG+GGG - tig0048662:830-849 Msa1466730:CDS 55.0%
! GTGATGGGGAGTGGAGAGAA+AGG - tig0048662:844-863 Msa1466730:CDS 55.0%
!! TTGGAGGTGGTGATGGGGAG+TGG - tig0048662:835-854 Msa1466730:CDS 60.0%
GGGGAGTGGAGAGAAAGGAG+AGG - tig0048662:849-868 Msa1466730:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0048662 gene 583 984 583 ID=Msa1466730;Name=Msa1466730
tig0048662 mRNA 583 984 583 ID=Msa1466730-mRNA-1;Parent=Msa1466730;Name=Msa1466730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|133
tig0048662 exon 583 984 583 ID=Msa1466730-mRNA-1:exon:25130;Parent=Msa1466730-mRNA-1
tig0048662 CDS 583 984 583 ID=Msa1466730-mRNA-1:cds;Parent=Msa1466730-mRNA-1
Gene Sequence

>Msa1466730

GGGAAGATAGTGAAATGGTGTTCTCAAATGGAGGTTCTTTCACATCCTTCGTTGGGTTGTTTTTTGACACACTGTGGTTGGAATTCGACTTTAGAAAGCTTGGTAAAAGGGGTTCCTTTGGTGGCGTTTCCACAATGGACAGATCAGATGACTAATGCAAAGTTAATTGAAGATGTGTGGAAGATAGGGGTAAGAGTGGATGAAGAAGTGAATGAAGATGGAATTGTGAGAGGGGGTGAAATTAGGAGGTGTTTGGAGGTGGTGATGGGGAGTGGAGAGAAAGGAGAGGAATTGAGAAGGAATGCAAAGAAATGGAAGGAGTTAGCTAGAGAAGCAGTGAAGGAAGGTGGCTCTTCAGAAAAGAATCTGAGGAGTTTTTTGGATGGGGTTGCTAGATCATGA
Protein sequence

>Msa1466730

GKIVKWCSQMEVLSHPSLGCFLTHCGWNSTLESLVKGVPLVAFPQWTDQMTNAKLIEDVWKIGVRVDEEVNEDGIVRGGEIRRCLEVVMGSGEKGEELRRNAKKWKELAREAVKEGGSSEKNLRSFLDGVARS*