AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678730 MtrunA17_Chr4g0024601 90.167 539 10 2 1 496 1 539 0.0 977
Msa0678730 MtrunA17_Chr8g0386251 27.861 201 129 6 2 189 10 207 2.02e-13 71.2
Msa0678730 MtrunA17_Chr5g0431151 31.098 164 104 4 8 168 82 239 1.22e-11 67.4
Msa0678730 MtrunA17_Chr5g0431171 31.098 164 104 4 8 168 81 238 1.48e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678730 AT1G05180.1 73.092 524 113 2 1 496 17 540 0.0 803
Msa0678730 AT2G32410.1 68.834 523 136 1 1 496 1 523 0.0 766
Msa0678730 AT2G32410.2 72.263 411 114 0 1 411 1 411 0.0 648
Msa0678730 AT2G32410.3 72.727 407 111 0 1 407 1 407 0.0 645
Msa0678730 AT1G05180.2 70.096 418 95 3 107 496 21 436 0.0 606
Msa0678730 AT1G05180.3 67.076 407 101 4 107 485 21 422 0.0 558
Msa0678730 AT3G25880.1 63.768 69 22 2 1 69 1 66 3.17e-22 90.5
Msa0678730 AT3G25880.2 63.768 69 22 2 1 69 1 66 3.63e-22 90.5
Msa0678730 AT5G50580.2 27.381 168 114 3 8 170 14 178 1.61e-11 65.9
Msa0678730 AT5G50680.1 27.381 168 114 3 8 170 14 178 1.61e-11 65.9
Msa0678730 AT5G50580.1 30.370 135 88 2 8 139 14 145 2.14e-11 65.5
Msa0678730 AT5G50680.2 30.370 135 88 2 8 139 14 145 2.14e-11 65.5
Msa0678730 AT2G30110.1 28.947 152 100 2 8 157 78 223 3.54e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCGCTCCTATGGCCTTGC+TGG 0.200041 4_4:-35210505 Msa0678730:CDS
GTTGCCCTTGGAATGCTATT+TGG 0.221738 4_4:+35208258 None:intergenic
AGAAACACTTTGAAGAAAAT+TGG 0.261741 4_4:-35208288 Msa0678730:CDS
CTTTGAGTCTAGGAAGATTT+GGG 0.269541 4_4:+35212280 None:intergenic
ACTTTGAGTCTAGGAAGATT+TGG 0.269960 4_4:+35212279 None:intergenic
ACAGCTATTGTTATTGTAAC+AGG 0.288049 4_4:-35204748 Msa0678730:intron
AATATGTAGGTCCCCGTTAT+TGG 0.290671 4_4:+35204792 None:intergenic
TGTTTGGCTACGTAACATAT+TGG 0.312588 4_4:-35204635 Msa0678730:three_prime_UTR
ACTTCATGCTGTTGCTGCTT+TGG 0.337922 4_4:-35206155 Msa0678730:CDS
TCTTTATAATTATCTTCATC+TGG 0.341291 4_4:+35209759 None:intergenic
TGTAATTACCGTATGGATCT+TGG 0.343813 4_4:-35204461 Msa0678730:three_prime_UTR
GGTGGGGAGGCACCTCTTGA+AGG 0.344179 4_4:-35208506 Msa0678730:CDS
GTTTGGCTACGTAACATATT+GGG 0.348934 4_4:-35204634 Msa0678730:three_prime_UTR
GGTGTTGGTGGCTGCTCTAA+AGG 0.349726 4_4:-35209165 Msa0678730:intron
AAGCCTACCACCATGGCTTT+TGG 0.355187 4_4:+35209919 None:intergenic
ACACTTAAGAATCTTGTTCT+TGG 0.358004 4_4:-35211159 Msa0678730:CDS
GGTATATGCTTATGAGCAAC+AGG 0.360532 4_4:+35209980 None:intergenic
TGGCGATCGTATTTAACTTT+CGG 0.367591 4_4:+35212143 None:intergenic
TTTGTCTCAATTAATTTATC+CGG 0.392376 4_4:+35210884 None:intergenic
GTCTAATACCTCTTGAGTTC+AGG 0.394182 4_4:+35210166 None:intergenic
AATCTTGTTCTTGGTGGGAT+TGG 0.396367 4_4:-35211150 Msa0678730:CDS
TCTCAAGGGCTGCCTGTCCT+TGG 0.401275 4_4:+35211226 None:intergenic
CCCGCTCCTATGGCCTTGCT+GGG 0.402622 4_4:-35210504 Msa0678730:CDS
CCTTACATTGTAATTTGTAA+TGG 0.408228 4_4:-35204599 Msa0678730:three_prime_UTR
GGAAGCATCACTGTTGTTGA+TGG 0.409738 4_4:-35211129 Msa0678730:CDS
CTCTTGAAAATGCAGAATAT+GGG 0.419953 4_4:-35211253 Msa0678730:intron
TGCTGATGTAGAGTTTCTAT+TGG 0.421338 4_4:-35204576 Msa0678730:three_prime_UTR
AGGCAATTTGTACCAATAAC+GGG 0.422343 4_4:-35204804 Msa0678730:CDS
TACACACTTACTAATTCCTC+GGG 0.424199 4_4:+35209704 None:intergenic
CATGCTGTTGCTGCTTTGGT+CGG 0.430867 4_4:-35206151 Msa0678730:CDS
AGCAAATATTTGATTTCTCA+AGG 0.432024 4_4:+35211211 None:intergenic
CCCAGCAAGGCCATAGGAGC+GGG 0.432750 4_4:+35210504 None:intergenic
TCACTGCATCATTCAGCTCC+TGG 0.436587 4_4:+35210930 None:intergenic
TTGATCTTTGCCCGCTCCTA+TGG 0.436866 4_4:-35210514 Msa0678730:CDS
TTACTCAACTGTGGTCCTAC+TGG 0.438246 4_4:-35211189 Msa0678730:CDS
GAATTTGCAGAATATCTATC+AGG 0.445632 4_4:-35208352 Msa0678730:CDS
TCAGTGGAAGAAGTCATATC+TGG 0.446638 4_4:+35208476 None:intergenic
TAGTTGATGAAGCAAGCCTT+GGG 0.451173 4_4:-35210985 Msa0678730:CDS
TACTTTGAATGAGGATTCCA+TGG 0.456190 4_4:+35209734 None:intergenic
ATCAATGAGATGTGTCGATT+TGG 0.457453 4_4:-35206187 Msa0678730:CDS
AAAATATATAGAAGAGTATC+CGG 0.459970 4_4:-35210903 Msa0678730:CDS
CGTTATTGGTACAAATTGCC+TGG 0.463555 4_4:+35204806 None:intergenic
CTTTCTTGCAATTGAACGAA+TGG 0.466888 4_4:-35208313 Msa0678730:CDS
TTACACACTTACTAATTCCT+CGG 0.469341 4_4:+35209703 None:intergenic
ATCTTCGGTTAAACAATCCT+TGG 0.469483 4_4:-35210189 Msa0678730:CDS
TATAAAATGCATGGATGCAT+AGG 0.474238 4_4:+35204531 None:intergenic
TGCATCACAAGAAGTGATCA+AGG 0.474544 4_4:-35206122 Msa0678730:intron
TTTATATATACTTTGAGTCT+AGG 0.474823 4_4:+35212270 None:intergenic
CTTAAGAATCTTGTTCTTGG+TGG 0.477058 4_4:-35211156 Msa0678730:CDS
CAGGCAATTTGTACCAATAA+CGG 0.478799 4_4:-35204805 Msa0678730:CDS
GTGGGGAGGCACCTCTTGAA+GGG 0.482882 4_4:-35208505 Msa0678730:CDS
ATGTAGGACCTTCTTAAGGC+TGG 0.491709 4_4:-35209792 Msa0678730:intron
GTAGTTGATGAAGCAAGCCT+TGG 0.495363 4_4:-35210986 Msa0678730:intron
TTAAGAATCTTGTTCTTGGT+GGG 0.498099 4_4:-35211155 Msa0678730:CDS
CCATTACAAATTACAATGTA+AGG 0.498460 4_4:+35204599 None:intergenic
ATCGACACATCTCATTGATA+AGG 0.500753 4_4:+35206191 None:intergenic
ATGAATATTAGTACCTGAGT+TGG 0.501879 4_4:+35212123 None:intergenic
ACCTGTGATCCTCATCAGTT+AGG 0.502344 4_4:+35207017 None:intergenic
AAAGTTGAAGTCGGTGACCT+TGG 0.503816 4_4:-35211102 Msa0678730:CDS
TCAGCTGGTGGAAAGTTCAA+TGG 0.503938 4_4:-35210575 Msa0678730:intron
TACTTTGGTTGTTGCAACAC+AGG 0.504289 4_4:-35210840 Msa0678730:intron
TGTCAAACTGTCCAGGAAAA+CGG 0.505777 4_4:+35206756 None:intergenic
TTTGTTGCAAATGAAGGTGG+TGG 0.506597 4_4:-35208524 Msa0678730:CDS
GTAAACTGAGAAAAGAATGA+TGG 0.507617 4_4:+35210860 None:intergenic
AACAATGTAGGACCTTCTTA+AGG 0.509334 4_4:-35209796 Msa0678730:intron
GAGTTAAACTCGTCTTCAAT+CGG 0.511808 4_4:+35207067 None:intergenic
AACAAGATTCTTAAGTGTCT+CGG 0.515670 4_4:+35211164 None:intergenic
GGACCTTCTTAAGGCTGGAA+TGG 0.517046 4_4:-35209787 Msa0678730:CDS
GTTTGTTCGAATCAGTTTGA+AGG 0.518905 4_4:-35210482 Msa0678730:intron
ATGTGTGTGCTCATTTCTCC+AGG 0.530281 4_4:-35210948 Msa0678730:CDS
ACCCAGCAAGGCCATAGGAG+CGG 0.532978 4_4:+35210503 None:intergenic
GCTGTTGCTGCTTTGGTCGG+AGG 0.536187 4_4:-35206148 Msa0678730:CDS
TAAAGCTTGACAAAATCTGC+AGG 0.536240 4_4:-35210552 Msa0678730:CDS
CCTTACCTGTCAAACTGTCC+AGG 0.536304 4_4:+35206749 None:intergenic
TGTTGCAAATGAAGGTGGTG+GGG 0.541222 4_4:-35208522 Msa0678730:CDS
CAACCATTCCAGCCTTAAGA+AGG 0.542629 4_4:+35209784 None:intergenic
GGGATGCAACAGTGCCACTT+TGG 0.543168 4_4:-35206221 Msa0678730:intron
AGCAAGCCTTGGGGAGTCAA+AGG 0.545819 4_4:-35210975 Msa0678730:CDS
TTGTTGCAAATGAAGGTGGT+GGG 0.547431 4_4:-35208523 Msa0678730:CDS
ACCTAACTGATGAGGATCAC+AGG 0.549034 4_4:-35207018 Msa0678730:intron
TAAACTGAGAAAAGAATGAT+GGG 0.552781 4_4:+35210861 None:intergenic
CTTGACAAGAATGACAACAT+AGG 0.555415 4_4:+35209958 None:intergenic
TTGTCAAGACGGCTGATGAG+TGG 0.555647 4_4:-35209943 Msa0678730:CDS
GCAGAATATCTATCAGGCTA+AGG 0.556935 4_4:-35208346 Msa0678730:CDS
TATACATGACAGCATTGCTG+TGG 0.558535 4_4:-35206828 Msa0678730:intron
TTGACAAGAATGACAACATA+GGG 0.559006 4_4:+35209959 None:intergenic
GCAAATATTTGATTTCTCAA+GGG 0.562578 4_4:+35211212 None:intergenic
AGATCATCCAGAAAATGCTC+AGG 0.563630 4_4:+35210208 None:intergenic
AATATGGGGTGACCAAGGAC+AGG 0.570244 4_4:-35211238 Msa0678730:CDS
TGTCAAGACGGCTGATGAGT+GGG 0.574875 4_4:-35209942 Msa0678730:CDS
TGTTGTCATTCTTGTCAAGA+CGG 0.578662 4_4:-35209954 Msa0678730:CDS
TACCTCTTGAGTTCAGGCCA+AGG 0.582482 4_4:+35210172 None:intergenic
GAGATCCAAATAGCATTCCA+AGG 0.585310 4_4:-35208263 Msa0678730:CDS
TCTATTGGAAAATATTAGAG+TGG 0.586313 4_4:-35204561 Msa0678730:three_prime_UTR
GTATTTGTCCAAGATCCATA+CGG 0.587589 4_4:+35204453 None:intergenic
TTAAATACGATCGCCAACTC+AGG 0.588814 4_4:-35212136 Msa0678730:intron
TATCTATCAGGCTAAGGCTG+AGG 0.592394 4_4:-35208340 Msa0678730:CDS
GGGCCAAAAGCCATGGTGGT+AGG 0.597395 4_4:-35209922 Msa0678730:CDS
TATACCCACAGGTTTGCAGA+GGG 0.598457 4_4:-35210025 Msa0678730:intron
AGCGAGATCAAGTTCAGCAA+TGG 0.599615 4_4:-35212171 Msa0678730:exon
TGCAGAATATGGGGTGACCA+AGG 0.603181 4_4:-35211243 Msa0678730:intron
GATACTAAATGATAGTTCTG+TGG 0.604555 4_4:-35209216 Msa0678730:CDS
GATAAGGTCATCAGCCAAAG+TGG 0.605230 4_4:+35206207 None:intergenic
AGATAATTATAAAGAAGCCA+TGG 0.606226 4_4:-35209751 Msa0678730:CDS
TCTTGAAAATGCAGAATATG+GGG 0.610456 4_4:-35211252 Msa0678730:intron
AGTGTGCATTATAAAATGCA+TGG 0.614926 4_4:+35204522 None:intergenic
AATATTTGCTTACTCAACTG+TGG 0.618390 4_4:-35211198 Msa0678730:CDS
GAGATCAAGTTCAGCAATGG+CGG 0.619582 4_4:-35212168 Msa0678730:exon
ATCCTTGGCCTGAACTCAAG+AGG 0.623341 4_4:-35210174 Msa0678730:intron
ACGGGGACCTACATATTCAA+CGG 0.633497 4_4:-35204786 Msa0678730:CDS
AACAAACCCAGCAAGGCCAT+AGG 0.636928 4_4:+35210498 None:intergenic
GTCAATGCCGTTGAATATGT+AGG 0.637670 4_4:+35204779 None:intergenic
TGCAAATGAAGGTGGTGGGG+AGG 0.638053 4_4:-35208519 Msa0678730:CDS
TCGATGGAAGCCTACCACCA+TGG 0.638681 4_4:+35209912 None:intergenic
ATAACAATAGCTGTGACTTG+TGG 0.642207 4_4:+35204757 None:intergenic
TGATTCGAACAAACCCAGCA+AGG 0.645188 4_4:+35210491 None:intergenic
GATGAGTGGGCCAAAAGCCA+TGG 0.646031 4_4:-35209929 Msa0678730:CDS
ACAAAAGTACCTAACTGATG+AGG 0.653878 4_4:-35207026 Msa0678730:CDS
TTTGAGTCTAGGAAGATTTG+GGG 0.655069 4_4:+35212281 None:intergenic
CACACTTACTAATTCCTCGG+GGG 0.656833 4_4:+35209706 None:intergenic
ACACTTACTAATTCCTCGGG+GGG 0.659544 4_4:+35209707 None:intergenic
ATACATGACAGCATTGCTGT+GGG 0.660404 4_4:-35206827 Msa0678730:intron
AGATCCAAATAGCATTCCAA+GGG 0.660594 4_4:-35208262 Msa0678730:CDS
TTAAGTGTCTCGGAACCAGT+AGG 0.662844 4_4:+35211174 None:intergenic
AAAGCTTGACAAAATCTGCA+GGG 0.667162 4_4:-35210551 Msa0678730:CDS
TTGAGTCTAGGAAGATTTGG+GGG 0.673014 4_4:+35212282 None:intergenic
GTATACCCACAGGTTTGCAG+AGG 0.673627 4_4:-35210026 Msa0678730:intron
GATGGATCTAAAGTTGAAGT+CGG 0.679596 4_4:-35211111 Msa0678730:CDS
TCTGGTATAGACCCTTCAAG+AGG 0.684197 4_4:+35208494 None:intergenic
GGCAATTTGTACCAATAACG+GGG 0.688174 4_4:-35204803 Msa0678730:CDS
ACACACTTACTAATTCCTCG+GGG 0.696932 4_4:+35209705 None:intergenic
ATACCCACAGGTTTGCAGAG+GGG 0.703184 4_4:-35210024 Msa0678730:intron
GTATATGCTTATGAGCAACA+GGG 0.728435 4_4:+35209981 None:intergenic
AGTTGATGAAGCAAGCCTTG+GGG 0.731390 4_4:-35210984 Msa0678730:CDS
GAGTGGGCCAAAAGCCATGG+TGG 0.733329 4_4:-35209926 Msa0678730:CDS
GCTTGACAAAATCTGCAGGG+AGG 0.746994 4_4:-35210548 Msa0678730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTTATTAAATAATAACA+AGG - chr4_4:35207123-35207142 Msa0678730:intron 10.0%
!! ATTATCAATTTATTTATTCT+AGG - chr4_4:35208349-35208368 Msa0678730:CDS 10.0%
!!! CTAAATTGTTATTTGTTTAT+TGG - chr4_4:35205409-35205428 Msa0678730:intron 15.0%
!!! AAAAAAAGTATAGTTTTGAA+TGG + chr4_4:35206027-35206046 None:intergenic 15.0%
!!! TTGCTTTTAAACAATTATAT+TGG + chr4_4:35206664-35206683 None:intergenic 15.0%
!!! CTTGTAGTTTTAAATTTTAT+TGG - chr4_4:35207174-35207193 Msa0678730:intron 15.0%
!! TTTAAATGTCAAGTATATAA+AGG - chr4_4:35207252-35207271 Msa0678730:intron 15.0%
!!! TTTTTTAATCTAGAACTTTT+AGG - chr4_4:35207419-35207438 Msa0678730:intron 15.0%
!! TATATTAATAACAATGTTCT+TGG - chr4_4:35208156-35208175 Msa0678730:intron 15.0%
!! AAAAAATAATTGAAATCGTA+AGG - chr4_4:35208859-35208878 Msa0678730:intron 15.0%
!! TTATAAATACGAATTAAATG+TGG - chr4_4:35210250-35210269 Msa0678730:intron 15.0%
!! ATCAGTATTCAAAATTTAAA+TGG - chr4_4:35210299-35210318 Msa0678730:intron 15.0%
!! TCAGTATTCAAAATTTAAAT+GGG - chr4_4:35210300-35210319 Msa0678730:intron 15.0%
!!! ACTTAAGATGAAAATTTTAT+TGG - chr4_4:35210715-35210734 Msa0678730:intron 15.0%
!!! TGATAATCTAATATTGATTA+TGG + chr4_4:35211272-35211291 None:intergenic 15.0%
!!! TAAGTTTGTTAAATAATTCA+AGG - chr4_4:35211326-35211345 Msa0678730:intron 15.0%
!! TAGATATTAGATAATTAAGA+AGG - chr4_4:35211506-35211525 Msa0678730:intron 15.0%
!! TATAAATTACAGTGTAATAT+AGG + chr4_4:35211556-35211575 None:intergenic 15.0%
!! TCATGGAAATTTAATTATTA+AGG + chr4_4:35211624-35211643 None:intergenic 15.0%
!! TTTATATATACTTTGAGTCT+AGG + chr4_4:35204485-35204504 None:intergenic 20.0%
!!! GTCTTATTTGAAAAATAGAA+TGG - chr4_4:35204767-35204786 Msa0678730:CDS 20.0%
!! AAGTGTTATAGATTCTTTAT+AGG - chr4_4:35205105-35205124 Msa0678730:intron 20.0%
!!! AAAATATATAGAAGAGTATC+CGG - chr4_4:35205849-35205868 Msa0678730:intron 20.0%
!! TTTGTCTCAATTAATTTATC+CGG + chr4_4:35205871-35205890 None:intergenic 20.0%
!!! TTTTATTTTCTCTCTTTTAC+AGG + chr4_4:35206328-35206347 None:intergenic 20.0%
!! ACTGACAAGTTATTAAATAT+TGG - chr4_4:35206454-35206473 Msa0678730:intron 20.0%
!! TCTTTATAATTATCTTCATC+TGG + chr4_4:35206996-35207015 None:intergenic 20.0%
!!! TTTAAATTTTATTGGACCTT+TGG - chr4_4:35207182-35207201 Msa0678730:intron 20.0%
!!! TGTTGATTATAGTCATAATT+AGG - chr4_4:35207688-35207707 Msa0678730:intron 20.0%
!! CTTTCAAAATAAGGAAAAAT+AGG + chr4_4:35207747-35207766 None:intergenic 20.0%
!! TTATTCTGAACTATTTAACT+TGG - chr4_4:35207778-35207797 Msa0678730:intron 20.0%
!! TGTTTACTTTAGTTATTTGT+TGG - chr4_4:35208180-35208199 Msa0678730:intron 20.0%
!! ACAAATCTTAATGTTTCATA+AGG - chr4_4:35208661-35208680 Msa0678730:intron 20.0%
!! TAATAATGCAATTAAATGCA+TGG - chr4_4:35208956-35208975 Msa0678730:intron 20.0%
!! AATTGCAAATTATATAGTGA+TGG - chr4_4:35209076-35209095 Msa0678730:intron 20.0%
!!! GAATTTTATTATTATCGTCA+TGG - chr4_4:35209271-35209290 Msa0678730:intron 20.0%
!!! ATTTTGGTAGAATTTGATTA+TGG - chr4_4:35209481-35209500 Msa0678730:intron 20.0%
!! TAGAATTTGATTATGGTTAA+TGG - chr4_4:35209488-35209507 Msa0678730:intron 20.0%
!! AGAATTTGATTATGGTTAAT+GGG - chr4_4:35209489-35209508 Msa0678730:intron 20.0%
!!! TAATAGCTAATTTTAGACAA+GGG + chr4_4:35209594-35209613 None:intergenic 20.0%
!!! AATTTTTCCCTTGTTTATAT+TGG - chr4_4:35210044-35210063 Msa0678730:intron 20.0%
!!! ATTTTTCCCTTGTTTATATT+GGG - chr4_4:35210045-35210064 Msa0678730:intron 20.0%
!! TGATATAGTTAAACAAATCA+AGG - chr4_4:35210183-35210202 Msa0678730:CDS 20.0%
!!! GTTGGTAATGTTATAATAAT+GGG + chr4_4:35211101-35211120 None:intergenic 20.0%
!!! AGTTGGTAATGTTATAATAA+TGG + chr4_4:35211102-35211121 None:intergenic 20.0%
!! TATTTATATAGATTAATGCG+AGG - chr4_4:35211362-35211381 Msa0678730:intron 20.0%
!! ATTTATATAGATTAATGCGA+GGG - chr4_4:35211363-35211382 Msa0678730:intron 20.0%
!!! GAATCATTTTAAAGAGAAAA+TGG - chr4_4:35211469-35211488 Msa0678730:intron 20.0%
!! TCTCAAATGAATATGTATAA+TGG - chr4_4:35211770-35211789 Msa0678730:intron 20.0%
!! CTCAAATGAATATGTATAAT+GGG - chr4_4:35211771-35211790 Msa0678730:intron 20.0%
!!! GAATTTTTAACTGAATTGTT+TGG - chr4_4:35212040-35212059 Msa0678730:intron 20.0%
! GTAAGATTCATTCAATGTTA+GGG - chr4_4:35204699-35204718 Msa0678730:intron 25.0%
!!! GAAAAATAGAATGGTGTTAT+TGG - chr4_4:35204776-35204795 Msa0678730:CDS 25.0%
! TCCTAATTCATAGAAACTTA+AGG - chr4_4:35204824-35204843 Msa0678730:intron 25.0%
! CCTAATTCATAGAAACTTAA+GGG - chr4_4:35204825-35204844 Msa0678730:intron 25.0%
!! GCAAATATTTGATTTCTCAA+GGG + chr4_4:35205543-35205562 None:intergenic 25.0%
!! AGCAAATATTTGATTTCTCA+AGG + chr4_4:35205544-35205563 None:intergenic 25.0%
!!! TCTTGTATTCTAGTTTTGTT+TGG - chr4_4:35205698-35205717 Msa0678730:intron 25.0%
!!! TATTCTAGTTTTGTTTGGTT+TGG - chr4_4:35205703-35205722 Msa0678730:intron 25.0%
! TAAACTGAGAAAAGAATGAT+GGG + chr4_4:35205894-35205913 None:intergenic 25.0%
!! ATTCTTTTCTCAGTTTACTT+TGG - chr4_4:35205897-35205916 Msa0678730:intron 25.0%
!!! AAAAGTATAGTTTTGAATGG+AGG + chr4_4:35206024-35206043 None:intergenic 25.0%
! AATGAAAGAAACCAATCAAT+TGG - chr4_4:35206060-35206079 Msa0678730:intron 25.0%
! AAGATATACAACCAATTGAT+TGG + chr4_4:35206074-35206093 None:intergenic 25.0%
! GAAAATAAAAGAAACGAATG+TGG - chr4_4:35206338-35206357 Msa0678730:intron 25.0%
! AATAAAGGTTGTAATTGCAA+TGG - chr4_4:35206394-35206413 Msa0678730:intron 25.0%
! AAATATTGGATCATATGCTT+TGG - chr4_4:35206468-35206487 Msa0678730:intron 25.0%
! AATATTGGATCATATGCTTT+GGG - chr4_4:35206469-35206488 Msa0678730:intron 25.0%
!! TCTAGTTATGTAATTAGCTT+TGG - chr4_4:35206928-35206947 Msa0678730:intron 25.0%
! AGATAATTATAAAGAAGCCA+TGG - chr4_4:35207001-35207020 Msa0678730:intron 25.0%
! AGAGAGAATCTTTCAAAATA+AGG + chr4_4:35207756-35207775 None:intergenic 25.0%
! TATCAAATGACATAAGTCTT+AGG + chr4_4:35208002-35208021 None:intergenic 25.0%
!! AGAAACACTTTGAAGAAAAT+TGG - chr4_4:35208464-35208483 Msa0678730:intron 25.0%
! ATGTAGTATTTACACAATCA+AGG + chr4_4:35208688-35208707 None:intergenic 25.0%
! ACTTTATAGAAAGCTTATAC+AGG + chr4_4:35208715-35208734 None:intergenic 25.0%
! AATTAAGATTTATGTTGAGC+TGG - chr4_4:35208833-35208852 Msa0678730:intron 25.0%
!! ATTACACAACTTCTGAATTT+TGG - chr4_4:35209152-35209171 Msa0678730:intron 25.0%
!!! AATTTTGGAGACAAGAAAAA+CGG - chr4_4:35209167-35209186 Msa0678730:CDS 25.0%
! ATTATTATCGTCATGGTTAA+TGG - chr4_4:35209278-35209297 Msa0678730:intron 25.0%
! TTATTATCGTCATGGTTAAT+GGG - chr4_4:35209279-35209298 Msa0678730:intron 25.0%
!!! GCTGTTGTTATTGTTTATTT+TGG - chr4_4:35209465-35209484 Msa0678730:intron 25.0%
!! AATAGCTAATTTTAGACAAG+GGG + chr4_4:35209593-35209612 None:intergenic 25.0%
!! GTAATAGCTAATTTTAGACA+AGG + chr4_4:35209595-35209614 None:intergenic 25.0%
!!! GATACTAACCTTTATTTTGT+AGG - chr4_4:35209648-35209667 Msa0678730:intron 25.0%
! TTTGGAGAGTTAACTATAAA+CGG + chr4_4:35209766-35209785 None:intergenic 25.0%
! CTAGAAAAAACCAAAAGAAT+AGG + chr4_4:35209824-35209843 None:intergenic 25.0%
! ATTTCAGAAAGATAAATCCA+TGG + chr4_4:35209888-35209907 None:intergenic 25.0%
! ATGCTGTCATGTATATAAAT+AGG + chr4_4:35209919-35209938 None:intergenic 25.0%
! TTATGTAAATAGTGACAACT+AGG - chr4_4:35210154-35210173 Msa0678730:intron 25.0%
! AGTTAAACAAATCAAGGATT+TGG - chr4_4:35210189-35210208 Msa0678730:CDS 25.0%
! TAGAACCCACATAATTTAAT+GGG + chr4_4:35210327-35210346 None:intergenic 25.0%
!! CTAATGGTGGAAATTTATAT+GGG + chr4_4:35210366-35210385 None:intergenic 25.0%
!! TTTTATATTTTGCAGTGCAA+TGG - chr4_4:35210456-35210475 Msa0678730:intron 25.0%
!!! TGAAATTTGTTGTTCTTTCT+CGG - chr4_4:35210856-35210875 Msa0678730:CDS 25.0%
! AGGTTTAATCTAGTATGTTT+AGG + chr4_4:35211036-35211055 None:intergenic 25.0%
!!! AATGTTATAATAATGGGTCA+AGG + chr4_4:35211095-35211114 None:intergenic 25.0%
!! AAATTCTTTTTGTGGAATTC+AGG - chr4_4:35211299-35211318 Msa0678730:intron 25.0%
!!! ATAATTAAGAAGGCTTTAAG+CGG - chr4_4:35211516-35211535 Msa0678730:intron 25.0%
! TACACTGTAATTTATAGTTG+AGG - chr4_4:35211560-35211579 Msa0678730:intron 25.0%
!!! TATTGTAACAGGTTTTAGTA+TGG - chr4_4:35212015-35212034 Msa0678730:intron 25.0%
!!! TATTGTAACAGGTTTTAGTA+TGG - chr4_4:35212015-35212034 Msa0678730:intron 25.0%
! CCATTACAAATTACAATGTA+AGG + chr4_4:35212156-35212175 None:intergenic 25.0%
!! CCTTACATTGTAATTTGTAA+TGG - chr4_4:35212153-35212172 Msa0678730:CDS 25.0%
! TCTATTGGAAAATATTAGAG+TGG - chr4_4:35212191-35212210 Msa0678730:five_prime_UTR 25.0%
!! GAAATTTTGTAATTACCGTA+TGG - chr4_4:35212284-35212303 Msa0678730:five_prime_UTR 25.0%
ATGAATATTAGTACCTGAGT+TGG + chr4_4:35204632-35204651 None:intergenic 30.0%
CGTAAGATTCATTCAATGTT+AGG - chr4_4:35204698-35204717 Msa0678730:intron 30.0%
CCCTTAAGTTTCTATGAATT+AGG + chr4_4:35204828-35204847 None:intergenic 30.0%
TTCATAGAAACTTAAGGGAA+AGG - chr4_4:35204830-35204849 Msa0678730:intron 30.0%
TCATAGAAACTTAAGGGAAA+GGG - chr4_4:35204831-35204850 Msa0678730:intron 30.0%
CAAAAATTATGATTCCACCT+GGG - chr4_4:35204897-35204916 Msa0678730:intron 30.0%
TCTCCTAAACAATTTGTCTT+TGG - chr4_4:35204934-35204953 Msa0678730:intron 30.0%
TTACAGCTAACCAATCAATT+GGG + chr4_4:35204982-35205001 None:intergenic 30.0%
!! TGGTTTCTCACTGTTTTATT+TGG - chr4_4:35205429-35205448 Msa0678730:intron 30.0%
!!! GGTTTCTCACTGTTTTATTT+GGG - chr4_4:35205430-35205449 Msa0678730:intron 30.0%
ACTCTTGAAAATGCAGAATA+TGG - chr4_4:35205498-35205517 Msa0678730:intron 30.0%
CTCTTGAAAATGCAGAATAT+GGG - chr4_4:35205499-35205518 Msa0678730:intron 30.0%
TCTTGAAAATGCAGAATATG+GGG - chr4_4:35205500-35205519 Msa0678730:intron 30.0%
AATATTTGCTTACTCAACTG+TGG - chr4_4:35205554-35205573 Msa0678730:intron 30.0%
AACAAGATTCTTAAGTGTCT+CGG + chr4_4:35205591-35205610 None:intergenic 30.0%
ACACTTAAGAATCTTGTTCT+TGG - chr4_4:35205593-35205612 Msa0678730:intron 30.0%
TTAAGAATCTTGTTCTTGGT+GGG - chr4_4:35205597-35205616 Msa0678730:intron 30.0%
!!! TGACCTTGGAAACAATTTTT+TGG - chr4_4:35205664-35205683 Msa0678730:intron 30.0%
!!! GACCTTGGAAACAATTTTTT+GGG - chr4_4:35205665-35205684 Msa0678730:intron 30.0%
TACCCAAAAAATTGTTTCCA+AGG + chr4_4:35205670-35205689 None:intergenic 30.0%
!!! TAGTTTTGTTTGGTTTGGTT+TGG - chr4_4:35205708-35205727 Msa0678730:intron 30.0%
CAAATTAAAGACCAAAAGAG+AGG + chr4_4:35205734-35205753 None:intergenic 30.0%
GTAAACTGAGAAAAGAATGA+TGG + chr4_4:35205895-35205914 None:intergenic 30.0%
AAAGCAATGTGCTCTTTATA+AGG + chr4_4:35206126-35206145 None:intergenic 30.0%
GAATGTGGTCATTTGTAAAA+CGG - chr4_4:35206353-35206372 Msa0678730:intron 30.0%
! AAAACGGTATTGAAAAGAGA+AGG - chr4_4:35206369-35206388 Msa0678730:intron 30.0%
! AAACGGTATTGAAAAGAGAA+GGG - chr4_4:35206370-35206389 Msa0678730:intron 30.0%
TGAAAAGAGAAGGGAAATAA+AGG - chr4_4:35206379-35206398 Msa0678730:intron 30.0%
TTGACAAGAATGACAACATA+GGG + chr4_4:35206796-35206815 None:intergenic 30.0%
!!! TTTTTTTCTTCTCTAGTCGA+TGG + chr4_4:35206859-35206878 None:intergenic 30.0%
ATCGACTAGAGAAGAAAAAA+AGG - chr4_4:35206858-35206877 Msa0678730:intron 30.0%
AGAAGAAAAAAAGGAGTTCA+AGG - chr4_4:35206867-35206886 Msa0678730:intron 30.0%
TTACACACTTACTAATTCCT+CGG + chr4_4:35207052-35207071 None:intergenic 30.0%
ACTTCTAAACTGAAAATTGG+CGG + chr4_4:35207090-35207109 None:intergenic 30.0%
GTGACTTCTAAACTGAAAAT+TGG + chr4_4:35207093-35207112 None:intergenic 30.0%
TTTGTGTCTGATAATTGTCA+AGG - chr4_4:35207342-35207361 Msa0678730:intron 30.0%
TCTGATAATTGTCAAGGTTA+AGG - chr4_4:35207348-35207367 Msa0678730:intron 30.0%
CTGATAATTGTCAAGGTTAA+GGG - chr4_4:35207349-35207368 Msa0678730:intron 30.0%
!! AGGCATTGTGTAAACTTTTA+CGG - chr4_4:35207439-35207458 Msa0678730:intron 30.0%
! CTGATGTTGTTTACTTTCTT+AGG - chr4_4:35207498-35207517 Msa0678730:intron 30.0%
! GATACTAAATGATAGTTCTG+TGG - chr4_4:35207536-35207555 Msa0678730:intron 30.0%
!!! AGACGACGTTTTTTCAATTA+AGG + chr4_4:35208035-35208054 None:intergenic 30.0%
!! CGTCTTATTTGAAATACTAG+AGG - chr4_4:35208050-35208069 Msa0678730:intron 30.0%
GTTAAGAGTTTGTCGTTATT+TGG - chr4_4:35208094-35208113 Msa0678730:intron 30.0%
! TGAACTACATTGTTCAGTTT+TGG - chr4_4:35208123-35208142 Msa0678730:intron 30.0%
! GAACTACATTGTTCAGTTTT+GGG - chr4_4:35208124-35208143 Msa0678730:intron 30.0%
TACATTTCACATCTTTGTAC+AGG - chr4_4:35208203-35208222 Msa0678730:intron 30.0%
AGATTCAATTACTAACTCAG+TGG + chr4_4:35208295-35208314 None:intergenic 30.0%
GAATTTGCAGAATATCTATC+AGG - chr4_4:35208400-35208419 Msa0678730:intron 30.0%
AGCAAAACATTACTCAAAAC+AGG + chr4_4:35208615-35208634 None:intergenic 30.0%
GAATTAAATAAGCAGTCCTT+TGG + chr4_4:35208774-35208793 None:intergenic 30.0%
! CATTTTTGTAATGCAAAGCT+TGG + chr4_4:35208899-35208918 None:intergenic 30.0%
CAAGCTTTGCATTACAAAAA+TGG - chr4_4:35208897-35208916 Msa0678730:intron 30.0%
TGCAAATTATATAGTGATGG+AGG - chr4_4:35209079-35209098 Msa0678730:intron 30.0%
! GCAAATTATATAGTGATGGA+GGG - chr4_4:35209080-35209099 Msa0678730:intron 30.0%
GAAGTTAGATGTAGAATTGT+GGG - chr4_4:35209102-35209121 Msa0678730:intron 30.0%
AAGTTAGATGTAGAATTGTG+GGG - chr4_4:35209103-35209122 Msa0678730:intron 30.0%
GAAGTGAACTTCTGTTATTA+TGG - chr4_4:35209218-35209237 Msa0678730:CDS 30.0%
GTTGTTATCCTTATTGTTGT+TGG - chr4_4:35209240-35209259 Msa0678730:intron 30.0%
! ATCCTTATTGTTGTTGGATT+TGG - chr4_4:35209246-35209265 Msa0678730:intron 30.0%
!! ATTACACCACTTTTGAATGT+TGG - chr4_4:35209357-35209376 Msa0678730:intron 30.0%
TTATCACCAACATTCAAAAG+TGG + chr4_4:35209366-35209385 None:intergenic 30.0%
! GTATATTTCAAGTAGACGAT+TGG - chr4_4:35209532-35209551 Msa0678730:intron 30.0%
TCTGCAAACCTACAAAATAA+AGG + chr4_4:35209659-35209678 None:intergenic 30.0%
TTGGAGAGTTAACTATAAAC+GGG + chr4_4:35209765-35209784 None:intergenic 30.0%
AAAAACCAAAAGAATAGGCA+TGG + chr4_4:35209819-35209838 None:intergenic 30.0%
TGAGATATAATCTACATCCA+TGG - chr4_4:35209868-35209887 Msa0678730:intron 30.0%
!! GATTTATCTTTCTGAAATGC+TGG - chr4_4:35209890-35209909 Msa0678730:CDS 30.0%
CAACACAAATTTCAACCAAT+AGG + chr4_4:35210115-35210134 None:intergenic 30.0%
TTGGTTGAAATTTGTGTTGA+TGG - chr4_4:35210116-35210135 Msa0678730:intron 30.0%
GTAGAACCCACATAATTTAA+TGG + chr4_4:35210328-35210347 None:intergenic 30.0%
ATGTGGGTTCTACATAAATT+CGG - chr4_4:35210335-35210354 Msa0678730:intron 30.0%
! CCTAATGGTGGAAATTTATA+TGG + chr4_4:35210367-35210386 None:intergenic 30.0%
CCATATAAATTTCCACCATT+AGG - chr4_4:35210364-35210383 Msa0678730:intron 30.0%
! TTTTCAGTGACTTCTTATTG+AGG - chr4_4:35210425-35210444 Msa0678730:intron 30.0%
TTTCAGTGACTTCTTATTGA+GGG - chr4_4:35210426-35210445 Msa0678730:intron 30.0%
AATCAGCCTACTTAATGAAT+TGG - chr4_4:35210510-35210529 Msa0678730:CDS 30.0%
ATCAGCCTACTTAATGAATT+GGG - chr4_4:35210511-35210530 Msa0678730:CDS 30.0%
GCAAAAAAACTATTCCAGAT+GGG + chr4_4:35210669-35210688 None:intergenic 30.0%
TGCAAAAAAACTATTCCAGA+TGG + chr4_4:35210670-35210689 None:intergenic 30.0%
TTTGCAAGTTCTTATTCTCT+TGG - chr4_4:35210684-35210703 Msa0678730:intron 30.0%
TTGCAAGTTCTTATTCTCTT+GGG - chr4_4:35210685-35210704 Msa0678730:intron 30.0%
!!! GAAAATTTTATTGGCTCCTT+TGG - chr4_4:35210724-35210743 Msa0678730:intron 30.0%
CACAAAAAGAAGTCATTAAG+CGG - chr4_4:35210833-35210852 Msa0678730:intron 30.0%
GTAATTGTATGCTCAACAAA+AGG + chr4_4:35210998-35211017 None:intergenic 30.0%
!! GTATGTTTAGGTTTTGATCT+AGG + chr4_4:35211024-35211043 None:intergenic 30.0%
GTTTACATATAAATGCGAGT+TGG + chr4_4:35211119-35211138 None:intergenic 30.0%
GCTCTTATGAAACACAAATT+GGG + chr4_4:35211141-35211160 None:intergenic 30.0%
TGCTCTTATGAAACACAAAT+TGG + chr4_4:35211142-35211161 None:intergenic 30.0%
! AGCAACAGAAATTCTTTTTG+TGG - chr4_4:35211291-35211310 Msa0678730:intron 30.0%
CAAGTTTAATGCTCTCTAAA+TGG - chr4_4:35211416-35211435 Msa0678730:intron 30.0%
TTAATGCTCTCTAAATGGTA+TGG - chr4_4:35211421-35211440 Msa0678730:intron 30.0%
ATGTGAAGGTGAATATTCTA+TGG - chr4_4:35211447-35211466 Msa0678730:intron 30.0%
TTTAAAGAGAAAATGGAGTG+TGG - chr4_4:35211476-35211495 Msa0678730:intron 30.0%
!! TAATTAAGAAGGCTTTAAGC+GGG - chr4_4:35211517-35211536 Msa0678730:intron 30.0%
GATCATACAAAATCCTTCTT+AGG + chr4_4:35211698-35211717 None:intergenic 30.0%
! ACAGCTATTGTTATTGTAAC+AGG - chr4_4:35212004-35212023 Msa0678730:intron 30.0%
! ACAGCTATTGTTATTGTAAC+AGG - chr4_4:35212004-35212023 Msa0678730:intron 30.0%
TATAAAATGCATGGATGCAT+AGG + chr4_4:35212224-35212243 None:intergenic 30.0%
AGTGTGCATTATAAAATGCA+TGG + chr4_4:35212233-35212252 None:intergenic 30.0%
! TTTTATAATGCACACTTCTG+TGG - chr4_4:35212237-35212256 Msa0678730:five_prime_UTR 30.0%
TTTGAGTCTAGGAAGATTTG+GGG + chr4_4:35204474-35204493 None:intergenic 35.0%
CTTTGAGTCTAGGAAGATTT+GGG + chr4_4:35204475-35204494 None:intergenic 35.0%
ACTTTGAGTCTAGGAAGATT+TGG + chr4_4:35204476-35204495 None:intergenic 35.0%
! TTTTTGATGTGTGGGGTTTT+GGG + chr4_4:35204528-35204547 None:intergenic 35.0%
!! TGTCTGTGTTTTTGATGTGT+GGG + chr4_4:35204536-35204555 None:intergenic 35.0%
! TGGCGATCGTATTTAACTTT+CGG + chr4_4:35204612-35204631 None:intergenic 35.0%
CTTACGCAACAGCAAAATTA+TGG + chr4_4:35204684-35204703 None:intergenic 35.0%
TCATTCAAGAGTTCTTCAAC+TGG - chr4_4:35204739-35204758 Msa0678730:intron 35.0%
AAGAGTTCTTCAACTGGAAT+TGG - chr4_4:35204745-35204764 Msa0678730:intron 35.0%
CATAGAAACTTAAGGGAAAG+GGG - chr4_4:35204832-35204851 Msa0678730:intron 35.0%
! CCAGGTGGAATCATAATTTT+TGG + chr4_4:35204899-35204918 None:intergenic 35.0%
CCAAAAATTATGATTCCACC+TGG - chr4_4:35204896-35204915 Msa0678730:intron 35.0%
CCACCAAAGACAAATTGTTT+AGG + chr4_4:35204940-35204959 None:intergenic 35.0%
CCTAAACAATTTGTCTTTGG+TGG - chr4_4:35204937-35204956 Msa0678730:intron 35.0%
CTTACAGCTAACCAATCAAT+TGG + chr4_4:35204983-35205002 None:intergenic 35.0%
! TTGATTGGTTAGCTGTAAGT+AGG - chr4_4:35204984-35205003 Msa0678730:intron 35.0%
! TGATTGGTTAGCTGTAAGTA+GGG - chr4_4:35204985-35205004 Msa0678730:intron 35.0%
GTAAGTAGGGTCTTAGATAA+AGG - chr4_4:35204998-35205017 Msa0678730:intron 35.0%
CATTGTACTAAATTGCGTTG+CGG - chr4_4:35205143-35205162 Msa0678730:intron 35.0%
CTTAAGAATCTTGTTCTTGG+TGG - chr4_4:35205596-35205615 Msa0678730:intron 35.0%
! GATGGATCTAAAGTTGAAGT+CGG - chr4_4:35205641-35205660 Msa0678730:intron 35.0%
CTCTTTGATAAACTTTCAGC+TGG - chr4_4:35206162-35206181 Msa0678730:CDS 35.0%
TTTGATAAACTTTCAGCTGG+TGG - chr4_4:35206165-35206184 Msa0678730:CDS 35.0%
TAAAGCTTGACAAAATCTGC+AGG - chr4_4:35206200-35206219 Msa0678730:CDS 35.0%
AAAGCTTGACAAAATCTGCA+GGG - chr4_4:35206201-35206220 Msa0678730:CDS 35.0%
GTTTGTTCGAATCAGTTTGA+AGG - chr4_4:35206270-35206289 Msa0678730:intron 35.0%
!! GAATCAGTTTGAAGGTACTT+TGG - chr4_4:35206278-35206297 Msa0678730:intron 35.0%
AGGTTGTAATTGCAATGGTA+TGG - chr4_4:35206399-35206418 Msa0678730:intron 35.0%
!!! TGGGTGATTAGTCCTTTTTT+TGG - chr4_4:35206488-35206507 Msa0678730:intron 35.0%
!!! GGGTGATTAGTCCTTTTTTT+GGG - chr4_4:35206489-35206508 Msa0678730:intron 35.0%
TTCCTATCAGACCCAAAAAA+AGG + chr4_4:35206503-35206522 None:intergenic 35.0%
! AGCATTTTCTGGATGATCTT+CGG - chr4_4:35206548-35206567 Msa0678730:intron 35.0%
ATCTTCGGTTAAACAATCCT+TGG - chr4_4:35206563-35206582 Msa0678730:intron 35.0%
TGAAATCAATGAAGCAGAAC+AGG + chr4_4:35206633-35206652 None:intergenic 35.0%
GTATATGCTTATGAGCAACA+GGG + chr4_4:35206774-35206793 None:intergenic 35.0%
CTTGACAAGAATGACAACAT+AGG + chr4_4:35206797-35206816 None:intergenic 35.0%
TGTTGTCATTCTTGTCAAGA+CGG - chr4_4:35206798-35206817 Msa0678730:CDS 35.0%
TAGAACAGAAGCAGATGAAA+AGG + chr4_4:35206907-35206926 None:intergenic 35.0%
AACAATGTAGGACCTTCTTA+AGG - chr4_4:35206956-35206975 Msa0678730:intron 35.0%
TACTTTGAATGAGGATTCCA+TGG + chr4_4:35207021-35207040 None:intergenic 35.0%
TACACACTTACTAATTCCTC+GGG + chr4_4:35207051-35207070 None:intergenic 35.0%
!! TTTTATTGGACCTTTGGAGA+TGG - chr4_4:35207188-35207207 Msa0678730:intron 35.0%
!! CCTCAATTTTGATAGGAGTA+GGG + chr4_4:35207465-35207484 None:intergenic 35.0%
!! GAGAAAGCCTCAATTTTGAT+AGG + chr4_4:35207472-35207491 None:intergenic 35.0%
!! ACTCTAGTTCGTCAGATTTT+TGG - chr4_4:35207565-35207584 Msa0678730:intron 35.0%
!! CTCTAGTTCGTCAGATTTTT+GGG - chr4_4:35207566-35207585 Msa0678730:intron 35.0%
TACTTAAGATGTTCAGTCCT+AGG - chr4_4:35207856-35207875 Msa0678730:intron 35.0%
AGTCTCAATTGGATGAGATA+TGG - chr4_4:35207894-35207913 Msa0678730:intron 35.0%
! CAGGATTTTGTTGCAAATGA+AGG - chr4_4:35208222-35208241 Msa0678730:CDS 35.0%
! GATTTTGTTGCAAATGAAGG+TGG - chr4_4:35208225-35208244 Msa0678730:CDS 35.0%
CTTTCTTGCAATTGAACGAA+TGG - chr4_4:35208439-35208458 Msa0678730:intron 35.0%
AGATCCAAATAGCATTCCAA+GGG - chr4_4:35208490-35208509 Msa0678730:CDS 35.0%
!! AAGCTTTTAATTGTTGCCCT+TGG + chr4_4:35208509-35208528 None:intergenic 35.0%
GATTACTGCAAGCATATAGA+TGG + chr4_4:35208796-35208815 None:intergenic 35.0%
GAAAGTTAAAACAGATGCTG+TGG - chr4_4:35208931-35208950 Msa0678730:intron 35.0%
GGAAGTTAGATGTAGAATTG+TGG - chr4_4:35209101-35209120 Msa0678730:intron 35.0%
AGTTAGATGTAGAATTGTGG+GGG - chr4_4:35209104-35209123 Msa0678730:intron 35.0%
CACCAAATCCAACAACAATA+AGG + chr4_4:35209251-35209270 None:intergenic 35.0%
! CTTATTGTTGTTGGATTTGG+TGG - chr4_4:35209249-35209268 Msa0678730:intron 35.0%
! TTTTAGACAAGGGGTAGTTT+AGG + chr4_4:35209584-35209603 None:intergenic 35.0%
! AGATTTTTGCCAAGTCTACT+GGG - chr4_4:35209623-35209642 Msa0678730:intron 35.0%
GAGTTAAACTCGTCTTCAAT+CGG + chr4_4:35209688-35209707 None:intergenic 35.0%
! TTTTGTAACTCAGCTAGGTT+TGG + chr4_4:35209712-35209731 None:intergenic 35.0%
!! ACAAAAGTACCTAACTGATG+AGG - chr4_4:35209726-35209745 Msa0678730:CDS 35.0%
! TTTTGTAACTCAGGTAGGTT+TGG + chr4_4:35209784-35209803 None:intergenic 35.0%
!! GTAAGGTACTTTTGTAACTC+AGG + chr4_4:35209793-35209812 None:intergenic 35.0%
AAATTCTACCATCAACAGTG+AGG + chr4_4:35210029-35210048 None:intergenic 35.0%
CCAAGTCCCAATATAAACAA+GGG + chr4_4:35210054-35210073 None:intergenic 35.0%
TCCAAGTCCCAATATAAACA+AGG + chr4_4:35210055-35210074 None:intergenic 35.0%
TATAACACACTCACTCCTAT+TGG - chr4_4:35210097-35210116 Msa0678730:intron 35.0%
ATGGGACCCATTAAATTATG+TGG - chr4_4:35210318-35210337 Msa0678730:intron 35.0%
TGGGACCCATTAAATTATGT+GGG - chr4_4:35210319-35210338 Msa0678730:intron 35.0%
ATTGTTTAACACGCTCCTAA+TGG + chr4_4:35210382-35210401 None:intergenic 35.0%
TGCATCCCAATTCATTAAGT+AGG + chr4_4:35210519-35210538 None:intergenic 35.0%
ATCGACACATCTCATTGATA+AGG + chr4_4:35210564-35210583 None:intergenic 35.0%
!! ATCAATGAGATGTGTCGATT+TGG - chr4_4:35210565-35210584 Msa0678730:CDS 35.0%
!!! TTTTATTGGCTCCTTTGGTT+TGG - chr4_4:35210729-35210748 Msa0678730:intron 35.0%
AAGTGACTTAACCAAACCAA+AGG + chr4_4:35210743-35210762 None:intergenic 35.0%
! ACCATATCATATGAGAGCAT+TGG - chr4_4:35210972-35210991 Msa0678730:CDS 35.0%
AACTCCGCATAAAAATTGTG+TGG - chr4_4:35211235-35211254 Msa0678730:CDS 35.0%
! CACACCACACAATTTTTATG+CGG + chr4_4:35211242-35211261 None:intergenic 35.0%
TATATAGATTAATGCGAGGG+AGG - chr4_4:35211366-35211385 Msa0678730:intron 35.0%
ATATAGATTAATGCGAGGGA+GGG - chr4_4:35211367-35211386 Msa0678730:intron 35.0%
CTTGTTCGAGTATAGTTTCA+TGG + chr4_4:35211400-35211419 None:intergenic 35.0%
AAATGGTATGGTGTATGTGA+AGG - chr4_4:35211433-35211452 Msa0678730:intron 35.0%
TATTGTTCAGTGCATGTTCA+TGG + chr4_4:35211641-35211660 None:intergenic 35.0%
ATGCACTGAACAATAGATGA+TGG - chr4_4:35211646-35211665 Msa0678730:intron 35.0%
ATAACCCTAATGTAGTAACG+TGG - chr4_4:35211672-35211691 Msa0678730:intron 35.0%
! ATGGGTTTTCATCTTTGAGT+TGG - chr4_4:35211789-35211808 Msa0678730:intron 35.0%
!! TGGGTTTTCATCTTTGAGTT+GGG - chr4_4:35211790-35211809 Msa0678730:intron 35.0%
CAGGCAATTTGTACCAATAA+CGG - chr4_4:35211947-35211966 Msa0678730:intron 35.0%
AGGCAATTTGTACCAATAAC+GGG - chr4_4:35211948-35211967 Msa0678730:intron 35.0%
ATAACAATAGCTGTGACTTG+TGG + chr4_4:35211998-35212017 None:intergenic 35.0%
TGTTTGGCTACGTAACATAT+TGG - chr4_4:35212117-35212136 Msa0678730:intron 35.0%
GTTTGGCTACGTAACATATT+GGG - chr4_4:35212118-35212137 Msa0678730:intron 35.0%
TGCTGATGTAGAGTTTCTAT+TGG - chr4_4:35212176-35212195 Msa0678730:five_prime_UTR 35.0%
TGTAATTACCGTATGGATCT+TGG - chr4_4:35212291-35212310 Msa0678730:five_prime_UTR 35.0%
GTATTTGTCCAAGATCCATA+CGG + chr4_4:35212302-35212321 None:intergenic 35.0%
TTGAGTCTAGGAAGATTTGG+GGG + chr4_4:35204473-35204492 None:intergenic 40.0%
! GTTTTTGATGTGTGGGGTTT+TGG + chr4_4:35204529-35204548 None:intergenic 40.0%
!! GTCTGTGTTTTTGATGTGTG+GGG + chr4_4:35204535-35204554 None:intergenic 40.0%
!! GTGTCTGTGTTTTTGATGTG+TGG + chr4_4:35204537-35204556 None:intergenic 40.0%
TTAAATACGATCGCCAACTC+AGG - chr4_4:35204616-35204635 Msa0678730:three_prime_UTR 40.0%
GAGGCAAATGTTGTCAAGTT+TGG - chr4_4:35205042-35205061 Msa0678730:intron 40.0%
TAGCCACTGTTTGAAAACCT+TGG - chr4_4:35205200-35205219 Msa0678730:intron 40.0%
ACTGCAGTTGAGATAGCTAT+TGG - chr4_4:35205303-35205322 Msa0678730:intron 40.0%
! CGTCTCTGATCTGATTTGTA+TGG - chr4_4:35205465-35205484 Msa0678730:intron 40.0%
AATCTTGTTCTTGGTGGGAT+TGG - chr4_4:35205602-35205621 Msa0678730:intron 40.0%
!! TAGTTGATGAAGCAAGCCTT+GGG - chr4_4:35205767-35205786 Msa0678730:intron 40.0%
TACTTTGGTTGTTGCAACAC+AGG - chr4_4:35205912-35205931 Msa0678730:intron 40.0%
!!! GTCCTTTTTTTGGGTCTGAT+AGG - chr4_4:35206498-35206517 Msa0678730:intron 40.0%
AGATCATCCAGAAAATGCTC+AGG + chr4_4:35206547-35206566 None:intergenic 40.0%
GTCTAATACCTCTTGAGTTC+AGG + chr4_4:35206589-35206608 None:intergenic 40.0%
AAAAGCAAAGACCACAGACA+TGG - chr4_4:35206676-35206695 Msa0678730:intron 40.0%
CAATGAGAACATAGAGTGGA+AGG + chr4_4:35206703-35206722 None:intergenic 40.0%
CATGCAATGAGAACATAGAG+TGG + chr4_4:35206707-35206726 None:intergenic 40.0%
GGTATATGCTTATGAGCAAC+AGG + chr4_4:35206775-35206794 None:intergenic 40.0%
! GCTTTGGATGTGAACAATGT+AGG - chr4_4:35206944-35206963 Msa0678730:intron 40.0%
ACACACTTACTAATTCCTCG+GGG + chr4_4:35207050-35207069 None:intergenic 40.0%
CCCTACTCCTATCAAAATTG+AGG - chr4_4:35207462-35207481 Msa0678730:intron 40.0%
!! GCCTCAATTTTGATAGGAGT+AGG + chr4_4:35207466-35207485 None:intergenic 40.0%
!!! TTCGTCAGATTTTTGGGTGT+TGG - chr4_4:35207572-35207591 Msa0678730:intron 40.0%
AAACCAGCATGTAAGGTGAT+GGG + chr4_4:35207949-35207968 None:intergenic 40.0%
AAAACCAGCATGTAAGGTGA+TGG + chr4_4:35207950-35207969 None:intergenic 40.0%
CCTTACAAAACCAGCATGTA+AGG + chr4_4:35207956-35207975 None:intergenic 40.0%
!!! CCTTACATGCTGGTTTTGTA+AGG - chr4_4:35207953-35207972 Msa0678730:intron 40.0%
!!! TACATTGTTCAGTTTTGGGC+TGG - chr4_4:35208128-35208147 Msa0678730:intron 40.0%
TTTGTTGCAAATGAAGGTGG+TGG - chr4_4:35208228-35208247 Msa0678730:CDS 40.0%
TTGTTGCAAATGAAGGTGGT+GGG - chr4_4:35208229-35208248 Msa0678730:CDS 40.0%
TCAGTGGAAGAAGTCATATC+TGG + chr4_4:35208279-35208298 None:intergenic 40.0%
CAAATTCACATATTGCCTGC+AGG + chr4_4:35208387-35208406 None:intergenic 40.0%
GCAGAATATCTATCAGGCTA+AGG - chr4_4:35208406-35208425 Msa0678730:intron 40.0%
GAGATCCAAATAGCATTCCA+AGG - chr4_4:35208489-35208508 Msa0678730:CDS 40.0%
GCTTCTGACAAATTCTCCAA+AGG - chr4_4:35208755-35208774 Msa0678730:intron 40.0%
TGGAGACAAGAAAAACGGAT+TGG - chr4_4:35209172-35209191 Msa0678730:CDS 40.0%
! GAGATTTTTGCCAAGTCTAC+TGG - chr4_4:35209622-35209641 Msa0678730:intron 40.0%
! GGTACTTTTGTAACTCAGCT+AGG + chr4_4:35209717-35209736 None:intergenic 40.0%
! GGTACTTTTGTAACTCAGGT+AGG + chr4_4:35209789-35209808 None:intergenic 40.0%
AAGAATAGGCATGGAGAGTA+AGG + chr4_4:35209810-35209829 None:intergenic 40.0%
! ACTCTCCATGCCTATTCTTT+TGG - chr4_4:35209811-35209830 Msa0678730:intron 40.0%
TATACATGACAGCATTGCTG+TGG - chr4_4:35209924-35209943 Msa0678730:CDS 40.0%
ATACATGACAGCATTGCTGT+GGG - chr4_4:35209925-35209944 Msa0678730:CDS 40.0%
!! TTTTGCTTCGTGCTGTTGAT+CGG - chr4_4:35209956-35209975 Msa0678730:CDS 40.0%
! GCTAATTACAACCGTTTTCC+TGG - chr4_4:35209985-35210004 Msa0678730:CDS 40.0%
TGTCAAACTGTCCAGGAAAA+CGG + chr4_4:35209999-35210018 None:intergenic 40.0%
! CCCTTGTTTATATTGGGACT+TGG - chr4_4:35210051-35210070 Msa0678730:intron 40.0%
TGGGTTCTACATAAATTCGG+TGG - chr4_4:35210338-35210357 Msa0678730:intron 40.0%
GGGTTCTACATAAATTCGGT+GGG - chr4_4:35210339-35210358 Msa0678730:intron 40.0%
! ATTTTGCAGTGCAATGGATG+AGG - chr4_4:35210462-35210481 Msa0678730:intron 40.0%
TGCATCACAAGAAGTGATCA+AGG - chr4_4:35210630-35210649 Msa0678730:intron 40.0%
! TTCTGAGCTTTTACAAGCTC+AGG - chr4_4:35210761-35210780 Msa0678730:intron 40.0%
! TCTGAGCTTTTACAAGCTCA+GGG - chr4_4:35210762-35210781 Msa0678730:intron 40.0%
GCCAATGCTCTCATATGATA+TGG + chr4_4:35210976-35210995 None:intergenic 40.0%
!! TAATAATGGGTCAAGGTCCA+GGG + chr4_4:35211088-35211107 None:intergenic 40.0%
!! ATAATAATGGGTCAAGGTCC+AGG + chr4_4:35211089-35211108 None:intergenic 40.0%
AGAAAATGGAGTGTGGAAGA+AGG - chr4_4:35211483-35211502 Msa0678730:intron 40.0%
TAGGCCACGTTACTACATTA+GGG + chr4_4:35211679-35211698 None:intergenic 40.0%
TTAGGCCACGTTACTACATT+AGG + chr4_4:35211680-35211699 None:intergenic 40.0%
!!! GGGTTTTCATCTTTGAGTTG+GGG - chr4_4:35211791-35211810 Msa0678730:intron 40.0%
TATACTTGCAGCTCATAACC+AGG - chr4_4:35211928-35211947 Msa0678730:intron 40.0%
CGTTATTGGTACAAATTGCC+TGG + chr4_4:35211949-35211968 None:intergenic 40.0%
GGCAATTTGTACCAATAACG+GGG - chr4_4:35211949-35211968 Msa0678730:intron 40.0%
AATATGTAGGTCCCCGTTAT+TGG + chr4_4:35211963-35211982 None:intergenic 40.0%
GTCAATGCCGTTGAATATGT+AGG + chr4_4:35211976-35211995 None:intergenic 40.0%
! TTTTTGCTCGTTGACGTGTA+CGG - chr4_4:35212262-35212281 Msa0678730:five_prime_UTR 40.0%
AGCGAGATCAAGTTCAGCAA+TGG - chr4_4:35204581-35204600 Msa0678730:three_prime_UTR 45.0%
GAGATCAAGTTCAGCAATGG+CGG - chr4_4:35204584-35204603 Msa0678730:three_prime_UTR 45.0%
AGGGAAAGGGGCCAAAAATT+CGG - chr4_4:35204844-35204863 Msa0678730:intron 45.0%
! TCAGCCGAACTCCGAATTTT+TGG + chr4_4:35204858-35204877 None:intergenic 45.0%
GCTGAGAGGTAAGTAAAGTC+TGG - chr4_4:35204873-35204892 Msa0678730:intron 45.0%
AGAACCTGAGTTCAATTCCC+AGG + chr4_4:35204917-35204936 None:intergenic 45.0%
ACCACTTGAGCCCAATTGAT+TGG - chr4_4:35204969-35204988 Msa0678730:intron 45.0%
ACCAATCAATTGGGCTCAAG+TGG + chr4_4:35204973-35204992 None:intergenic 45.0%
AAAGGTTTGCGACTGCGATA+TGG - chr4_4:35205016-35205035 Msa0678730:intron 45.0%
ATTGCGTTGCGGAGTAATAG+TGG - chr4_4:35205154-35205173 Msa0678730:intron 45.0%
AAACAGTGGCTACAACGTAG+TGG + chr4_4:35205192-35205211 None:intergenic 45.0%
! TGGCCAAGGTTTTCAAACAG+TGG + chr4_4:35205206-35205225 None:intergenic 45.0%
TTACTCAACTGTGGTCCTAC+TGG - chr4_4:35205563-35205582 Msa0678730:intron 45.0%
TTAAGTGTCTCGGAACCAGT+AGG + chr4_4:35205581-35205600 None:intergenic 45.0%
!! GGAAGCATCACTGTTGTTGA+TGG - chr4_4:35205623-35205642 Msa0678730:intron 45.0%
AAAGTTGAAGTCGGTGACCT+TGG - chr4_4:35205650-35205669 Msa0678730:intron 45.0%
!!! GTTTGGTTTGGCCTCTCTTT+TGG - chr4_4:35205720-35205739 Msa0678730:intron 45.0%
!! GTAGTTGATGAAGCAAGCCT+TGG - chr4_4:35205766-35205785 Msa0678730:intron 45.0%
!! AGTTGATGAAGCAAGCCTTG+GGG - chr4_4:35205768-35205787 Msa0678730:intron 45.0%
! ATTTTGCCTTTGACTCCCCA+AGG + chr4_4:35205786-35205805 None:intergenic 45.0%
ATGTGTGTGCTCATTTCTCC+AGG - chr4_4:35205804-35205823 Msa0678730:intron 45.0%
TCAGCTGGTGGAAAGTTCAA+TGG - chr4_4:35206177-35206196 Msa0678730:CDS 45.0%
TGATTCGAACAAACCCAGCA+AGG + chr4_4:35206264-35206283 None:intergenic 45.0%
! GTCAAAGCCTGAGCATTTTC+TGG - chr4_4:35206537-35206556 Msa0678730:intron 45.0%
CTCATTGCATGTATACCCAC+AGG - chr4_4:35206716-35206735 Msa0678730:intron 45.0%
TATACCCACAGGTTTGCAGA+GGG - chr4_4:35206727-35206746 Msa0678730:intron 45.0%
ATGTAGGACCTTCTTAAGGC+TGG - chr4_4:35206960-35206979 Msa0678730:intron 45.0%
CAACCATTCCAGCCTTAAGA+AGG + chr4_4:35206971-35206990 None:intergenic 45.0%
GGGGGCAAATACTTTGAATG+AGG + chr4_4:35207030-35207049 None:intergenic 45.0%
ACACTTACTAATTCCTCGGG+GGG + chr4_4:35207048-35207067 None:intergenic 45.0%
CACACTTACTAATTCCTCGG+GGG + chr4_4:35207049-35207068 None:intergenic 45.0%
! ATTGGACCTTTGGAGATGGT+TGG - chr4_4:35207192-35207211 Msa0678730:intron 45.0%
!!! GTCAGATTTTTGGGTGTTGG+TGG - chr4_4:35207575-35207594 Msa0678730:intron 45.0%
GAGCCTATCCAAGATCCATT+TGG - chr4_4:35207806-35207825 Msa0678730:intron 45.0%
TGGCCAAATGGATCTTGGAT+AGG + chr4_4:35207812-35207831 None:intergenic 45.0%
ATGACCTGAGTAGCCTGATT+GGG + chr4_4:35207837-35207856 None:intergenic 45.0%
TATGACCTGAGTAGCCTGAT+TGG + chr4_4:35207838-35207857 None:intergenic 45.0%
TGTTGCAAATGAAGGTGGTG+GGG - chr4_4:35208230-35208249 Msa0678730:CDS 45.0%
TCTGGTATAGACCCTTCAAG+AGG + chr4_4:35208261-35208280 None:intergenic 45.0%
AGGTTTATCTACCATCCTGC+AGG - chr4_4:35208369-35208388 Msa0678730:intron 45.0%
TTCACATATTGCCTGCAGGA+TGG + chr4_4:35208383-35208402 None:intergenic 45.0%
TATCTATCAGGCTAAGGCTG+AGG - chr4_4:35208412-35208431 Msa0678730:intron 45.0%
GTTGCCCTTGGAATGCTATT+TGG + chr4_4:35208497-35208516 None:intergenic 45.0%
TAGATGTAGAATTGTGGGGG+AGG - chr4_4:35209107-35209126 Msa0678730:intron 45.0%
AGATGTAGAATTGTGGGGGA+GGG - chr4_4:35209108-35209127 Msa0678730:intron 45.0%
! AAGGGGTAGTTTAGGAGTGT+GGG + chr4_4:35209576-35209595 None:intergenic 45.0%
TAGTATCTGCCCAGTAGACT+TGG + chr4_4:35209635-35209654 None:intergenic 45.0%
ACCTAACTGATGAGGATCAC+AGG - chr4_4:35209734-35209753 Msa0678730:CDS 45.0%
ACCTGTGATCCTCATCAGTT+AGG + chr4_4:35209738-35209757 None:intergenic 45.0%
! GTTTTCCTGGACAGTTTGAC+AGG - chr4_4:35209998-35210017 Msa0678730:CDS 45.0%
GTTTAACACGCTCCTAATGG+TGG + chr4_4:35210379-35210398 None:intergenic 45.0%
GATAAGGTCATCAGCCAAAG+TGG + chr4_4:35210548-35210567 None:intergenic 45.0%
! ACTTCATGCTGTTGCTGCTT+TGG - chr4_4:35210597-35210616 Msa0678730:intron 45.0%
GTTTGCAATTCTAGCCCATC+TGG - chr4_4:35210652-35210671 Msa0678730:intron 45.0%
AATCATCCCTGTGTCTTGCT+TGG - chr4_4:35210886-35210905 Msa0678730:CDS 45.0%
TGTAGTAACGTGGCCTAAGA+AGG - chr4_4:35211682-35211701 Msa0678730:intron 45.0%
ACGGGGACCTACATATTCAA+CGG - chr4_4:35211966-35211985 Msa0678730:intron 45.0%
GGGGCCAAAAATTCGGAGTT+CGG - chr4_4:35204851-35204870 Msa0678730:intron 50.0%
AAATTCGGAGTTCGGCTGAG+AGG - chr4_4:35204859-35204878 Msa0678730:intron 50.0%
TCCACCTGGGAATTGAACTC+AGG - chr4_4:35204910-35204929 Msa0678730:intron 50.0%
ACCTGAGTTCAATTCCCAGG+TGG + chr4_4:35204914-35204933 None:intergenic 50.0%
AAAACCTTGGCCACGAGTCA+CGG - chr4_4:35205213-35205232 Msa0678730:intron 50.0%
AGTGGTCACGTTGCACTTTC+AGG + chr4_4:35205258-35205277 None:intergenic 50.0%
GACCACTGTTGAGGCTGAAT+TGG - chr4_4:35205271-35205290 Msa0678730:intron 50.0%
AGCCAATTCAGCCTCAACAG+TGG + chr4_4:35205276-35205295 None:intergenic 50.0%
TGCAGAATATGGGGTGACCA+AGG - chr4_4:35205509-35205528 Msa0678730:intron 50.0%
AATATGGGGTGACCAAGGAC+AGG - chr4_4:35205514-35205533 Msa0678730:intron 50.0%
TCACTGCATCATTCAGCTCC+TGG + chr4_4:35205825-35205844 None:intergenic 50.0%
GCTTGACAAAATCTGCAGGG+AGG - chr4_4:35206204-35206223 Msa0678730:CDS 50.0%
TTGATCTTTGCCCGCTCCTA+TGG - chr4_4:35206238-35206257 Msa0678730:intron 50.0%
AACAAACCCAGCAAGGCCAT+AGG + chr4_4:35206257-35206276 None:intergenic 50.0%
ATCCTTGGCCTGAACTCAAG+AGG - chr4_4:35206578-35206597 Msa0678730:intron 50.0%
TACCTCTTGAGTTCAGGCCA+AGG + chr4_4:35206583-35206602 None:intergenic 50.0%
GTATACCCACAGGTTTGCAG+AGG - chr4_4:35206726-35206745 Msa0678730:intron 50.0%
ATACCCACAGGTTTGCAGAG+GGG - chr4_4:35206728-35206747 Msa0678730:intron 50.0%
AAACCCCTCTGCAAACCTGT+GGG + chr4_4:35206734-35206753 None:intergenic 50.0%
TTGTCAAGACGGCTGATGAG+TGG - chr4_4:35206809-35206828 Msa0678730:CDS 50.0%
TGTCAAGACGGCTGATGAGT+GGG - chr4_4:35206810-35206829 Msa0678730:CDS 50.0%
! AAGCCTACCACCATGGCTTT+TGG + chr4_4:35206836-35206855 None:intergenic 50.0%
GGACCTTCTTAAGGCTGGAA+TGG - chr4_4:35206965-35206984 Msa0678730:intron 50.0%
! TTCAAAGTATTTGCCCCCCG+AGG - chr4_4:35207032-35207051 Msa0678730:CDS 50.0%
! GACCTTTGGAGATGGTTGGT+AGG - chr4_4:35207196-35207215 Msa0678730:intron 50.0%
CTCCTACCAACCATCTCCAA+AGG + chr4_4:35207201-35207220 None:intergenic 50.0%
!! TTGGTGGCTGCTCTAAAGGT+TGG - chr4_4:35207591-35207610 Msa0678730:intron 50.0%
TGACCTGAGTAGCCTGATTG+GGG + chr4_4:35207836-35207855 None:intergenic 50.0%
AGATGTTCAGTCCTAGGCGT+AGG - chr4_4:35207862-35207881 Msa0678730:intron 50.0%
GATGTTCAGTCCTAGGCGTA+GGG - chr4_4:35207863-35207882 Msa0678730:intron 50.0%
ATGTTCAGTCCTAGGCGTAG+GGG - chr4_4:35207864-35207883 Msa0678730:intron 50.0%
!! GGGGTGTTGAGAGTCTCAAT+TGG - chr4_4:35207883-35207902 Msa0678730:intron 50.0%
TGCATGGCACTACAGTCTGT+AGG - chr4_4:35208972-35208991 Msa0678730:intron 50.0%
GCATGGCACTACAGTCTGTA+GGG - chr4_4:35208973-35208992 Msa0678730:intron 50.0%
ACTACAGTCTGTAGGGTGTG+TGG - chr4_4:35208980-35208999 Msa0678730:intron 50.0%
GATGTAGAATTGTGGGGGAG+GGG - chr4_4:35209109-35209128 Msa0678730:intron 50.0%
! AGTTTAGGAGTGTGGGGGAT+AGG + chr4_4:35209569-35209588 None:intergenic 50.0%
! AGGGGTAGTTTAGGAGTGTG+GGG + chr4_4:35209575-35209594 None:intergenic 50.0%
CAAGGGGTAGTTTAGGAGTG+TGG + chr4_4:35209577-35209596 None:intergenic 50.0%
CCTTACCTGTCAAACTGTCC+AGG + chr4_4:35210006-35210025 None:intergenic 50.0%
CCTGGACAGTTTGACAGGTA+AGG - chr4_4:35210003-35210022 Msa0678730:CDS 50.0%
AGGTAAGGCCTCACTGTTGA+TGG - chr4_4:35210018-35210037 Msa0678730:intron 50.0%
!! CATGCTGTTGCTGCTTTGGT+CGG - chr4_4:35210601-35210620 Msa0678730:intron 50.0%
AAATCTCTGCAGCACTCTCC+AGG + chr4_4:35210912-35210931 None:intergenic 50.0%
!! AGGGAATTAGGCATTGAGCG+GGG + chr4_4:35211069-35211088 None:intergenic 50.0%
!! CAGGGAATTAGGCATTGAGC+GGG + chr4_4:35211070-35211089 None:intergenic 50.0%
!! CCAGGGAATTAGGCATTGAG+CGG + chr4_4:35211071-35211090 None:intergenic 50.0%
GTGCAACGTGACCACTGTTG+AGG - chr4_4:35205262-35205281 Msa0678730:intron 55.0%
AGCAAGCCTTGGGGAGTCAA+AGG - chr4_4:35205777-35205796 Msa0678730:intron 55.0%
GAGTGGAAGGACCATGTCTG+TGG + chr4_4:35206690-35206709 None:intergenic 55.0%
CAAACCCCTCTGCAAACCTG+TGG + chr4_4:35206735-35206754 None:intergenic 55.0%
GATGAGTGGGCCAAAAGCCA+TGG - chr4_4:35206823-35206842 Msa0678730:intron 55.0%
TCGATGGAAGCCTACCACCA+TGG + chr4_4:35206843-35206862 None:intergenic 55.0%
!! GGTGTTGGTGGCTGCTCTAA+AGG - chr4_4:35207587-35207606 Msa0678730:intron 55.0%
GGGGATGGCCAAATGGATCT+TGG + chr4_4:35207817-35207836 None:intergenic 55.0%
CCTGATTGGGGATGGCCAAA+TGG + chr4_4:35207824-35207843 None:intergenic 55.0%
CCATTTGGCCATCCCCAATC+AGG - chr4_4:35207821-35207840 Msa0678730:intron 55.0%
CTGAGTAGCCTGATTGGGGA+TGG + chr4_4:35207832-35207851 None:intergenic 55.0%
CATCCCCAATCAGGCTACTC+AGG - chr4_4:35207830-35207849 Msa0678730:intron 55.0%
!! CCAGCATGTAAGGTGATGGG+TGG + chr4_4:35207946-35207965 None:intergenic 55.0%
CCACCCATCACCTTACATGC+TGG - chr4_4:35207943-35207962 Msa0678730:intron 55.0%
!! TGCAAATGAAGGTGGTGGGG+AGG - chr4_4:35208233-35208252 Msa0678730:CDS 55.0%
! GGGGTAGTTTAGGAGTGTGG+GGG + chr4_4:35209574-35209593 None:intergenic 55.0%
!! GGGATGCAACAGTGCCACTT+TGG - chr4_4:35210531-35210550 Msa0678730:CDS 55.0%
TCCAGGCCAAGCAAGACACA+GGG + chr4_4:35210895-35210914 None:intergenic 55.0%
!! TTGAGCGGGGTGTCGGAATA+AGG + chr4_4:35211056-35211075 None:intergenic 55.0%
!! TTAGGCATTGAGCGGGGTGT+CGG + chr4_4:35211063-35211082 None:intergenic 55.0%
CCGCTCAATGCCTAATTCCC+TGG - chr4_4:35211068-35211087 Msa0678730:intron 55.0%
GGGTCAAGGTCCAGGGAATT+AGG + chr4_4:35211081-35211100 None:intergenic 55.0%
TGCGACTGCGATATGGTGCG+AGG - chr4_4:35205023-35205042 Msa0678730:intron 60.0%
AACCCTAACGCCGTGACTCG+TGG + chr4_4:35205226-35205245 None:intergenic 60.0%
TCTCAAGGGCTGCCTGTCCT+TGG + chr4_4:35205529-35205548 None:intergenic 60.0%
ACCCAGCAAGGCCATAGGAG+CGG + chr4_4:35206252-35206271 None:intergenic 60.0%
GAGTGGGCCAAAAGCCATGG+TGG - chr4_4:35206826-35206845 Msa0678730:intron 60.0%
GGGCCAAAAGCCATGGTGGT+AGG - chr4_4:35206830-35206849 Msa0678730:intron 60.0%
CTCTCAACACCCCTACGCCT+AGG + chr4_4:35207876-35207895 None:intergenic 60.0%
!! GTGGGGAGGCACCTCTTGAA+GGG - chr4_4:35208247-35208266 Msa0678730:CDS 60.0%
GGAGTGTGGGGGATAGGCAT+AGG + chr4_4:35209563-35209582 None:intergenic 60.0%
!! GCTGTTGCTGCTTTGGTCGG+AGG - chr4_4:35210604-35210623 Msa0678730:intron 60.0%
TCCCTGTGTCTTGCTTGGCC+TGG - chr4_4:35210891-35210910 Msa0678730:CDS 60.0%
CTCCAGGCCAAGCAAGACAC+AGG + chr4_4:35210896-35210915 None:intergenic 60.0%
AACGCCGTGACTCGTGGCCA+AGG + chr4_4:35205220-35205239 None:intergenic 65.0%
TGGCCACGAGTCACGGCGTT+AGG - chr4_4:35205220-35205239 Msa0678730:intron 65.0%
GGCCACGAGTCACGGCGTTA+GGG - chr4_4:35205221-35205240 Msa0678730:intron 65.0%
CCCAGCAAGGCCATAGGAGC+GGG + chr4_4:35206251-35206270 None:intergenic 65.0%
! CCCGCTCCTATGGCCTTGCT+GGG - chr4_4:35206248-35206267 Msa0678730:intron 65.0%
!! GGTGGGGAGGCACCTCTTGA+AGG - chr4_4:35208246-35208265 Msa0678730:CDS 65.0%
! GCCCGCTCCTATGGCCTTGC+TGG - chr4_4:35206247-35206266 Msa0678730:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 35204415 35212359 35204415 ID=Msa0678730;Name=Msa0678730
chr4_4 mRNA 35204415 35212359 35204415 ID=Msa0678730-mRNA-1;Parent=Msa0678730;Name=Msa0678730-mRNA-1;_AED=0.14;_eAED=0.14;_QI=185|0.92|0.86|1|0.85|0.86|15|276|496
chr4_4 exon 35204415 35204687 35204415 ID=Msa0678730-mRNA-1:exon:8409;Parent=Msa0678730-mRNA-1
chr4_4 exon 35204749 35204835 35204749 ID=Msa0678730-mRNA-1:exon:8408;Parent=Msa0678730-mRNA-1
chr4_4 exon 35206123 35206231 35206123 ID=Msa0678730-mRNA-1:exon:8407;Parent=Msa0678730-mRNA-1
chr4_4 exon 35206764 35206838 35206764 ID=Msa0678730-mRNA-1:exon:8406;Parent=Msa0678730-mRNA-1
chr4_4 exon 35207019 35207104 35207019 ID=Msa0678730-mRNA-1:exon:8405;Parent=Msa0678730-mRNA-1
chr4_4 exon 35208221 35208383 35208221 ID=Msa0678730-mRNA-1:exon:8404;Parent=Msa0678730-mRNA-1
chr4_4 exon 35208476 35208549 35208476 ID=Msa0678730-mRNA-1:exon:8403;Parent=Msa0678730-mRNA-1
chr4_4 exon 35209166 35209254 35209166 ID=Msa0678730-mRNA-1:exon:8402;Parent=Msa0678730-mRNA-1
chr4_4 exon 35209715 35209808 35209715 ID=Msa0678730-mRNA-1:exon:8401;Parent=Msa0678730-mRNA-1
chr4_4 exon 35209886 35210036 35209886 ID=Msa0678730-mRNA-1:exon:8400;Parent=Msa0678730-mRNA-1
chr4_4 exon 35210175 35210254 35210175 ID=Msa0678730-mRNA-1:exon:8399;Parent=Msa0678730-mRNA-1
chr4_4 exon 35210483 35210593 35210483 ID=Msa0678730-mRNA-1:exon:8398;Parent=Msa0678730-mRNA-1
chr4_4 exon 35210841 35211004 35210841 ID=Msa0678730-mRNA-1:exon:8397;Parent=Msa0678730-mRNA-1
chr4_4 exon 35211088 35211260 35211088 ID=Msa0678730-mRNA-1:exon:8396;Parent=Msa0678730-mRNA-1
chr4_4 exon 35212137 35212359 35212137 ID=Msa0678730-mRNA-1:exon:8395;Parent=Msa0678730-mRNA-1
chr4_4 five_prime_UTR 35212175 35212359 35212175 ID=Msa0678730-mRNA-1:five_prime_utr;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35212137 35212174 35212137 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35211088 35211260 35211088 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35210841 35211004 35210841 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35210483 35210593 35210483 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35210175 35210254 35210175 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35209886 35210036 35209886 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35209715 35209808 35209715 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35209166 35209254 35209166 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35208476 35208549 35208476 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35208221 35208383 35208221 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35207019 35207104 35207019 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35206764 35206838 35206764 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35206123 35206231 35206123 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 CDS 35204752 35204835 35204752 ID=Msa0678730-mRNA-1:cds;Parent=Msa0678730-mRNA-1
chr4_4 three_prime_UTR 35204749 35204751 35204749 ID=Msa0678730-mRNA-1:three_prime_utr;Parent=Msa0678730-mRNA-1
chr4_4 three_prime_UTR 35204415 35204687 35204415 ID=Msa0678730-mRNA-1:three_prime_utr;Parent=Msa0678730-mRNA-1
Gene Sequence

>Msa0678730

ATGGCGGAACCGAAAGTTAAATACGATCGCCAACTCAGAATATGGGGTGACCAAGGACAGGCAGCCCTTGAGAAATCAAATATTTGCTTACTCAACTGTGGTCCTACTGGTTCCGAGACACTTAAGAATCTTGTTCTTGGTGGGATTGGAAGCATCACTGTTGTTGATGGATCTAAAGTTGAAGTCGGTGACCTTGGAAACAATTTTTTGGTTGATGAAGCAAGCCTTGGGGAGTCAAAGGCAAAATGTGTGTGCTCATTTCTCCAGGAGCTGAATGATGCAGTGAAAGCAAAATATATAGAAGAGTATCCGGATAAATTAATTGAGACAAACCCATCATTCTTTTCTCAGTTTACTTTGGTTGTTGCAACACAGCTGGTGGAAAGTTCAATGGTAAAGCTTGACAAAATCTGCAGGGAGGCAAATGTTATATTGATCTTTGCCCGCTCCTATGGCCTTGCTGGGTTTGTTCGAATCAGTTTGAAGGAACATACTGTGATTGAGTCAAAGCCTGAGCATTTTCTGGATGATCTTCGGTTAAACAATCCTTGGCCTGAACTCAAGAGGTTTGCAGAGGGGTTTGATTTGAATGTGCAAGACCCTGTTGCTCATAAGCATATACCCTATGTTGTCATTCTTGTCAAGACGGCTGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCGACTAGAGAAGAAAAAAAGGAGTTCAAGGACCTTCTTAAGGCTGGAATGGTTGCACCAGATGAAGATAATTATAAAGAAGCCATGGAATCCTCATTCAAAGTATTTGCCCCCCGAGGAATTAGTTCAGAGTTGCAACTGATACTAAATGATAGTTCTGTGGAAGTAGACTCTAGTTCGTCAGATTTTTGGGTGTTGGTGGCTGCTCTAAAGGATTTTGTTGCAAATGAAGGTGGTGGGGAGGCACCTCTTGAAGGGTCTATACCAGATATGACTTCTTCCACTGAGCAATATGTGAATTTGCAGAATATCTATCAGGCTAAGGCTGAGGCTGACTTTCTTGCAATTGAACGAATGGCGAGAAACACTTTGAAGAAAATTGGTAGAGATCCAAATAGCATTCCAAGGGCAACAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTTTGCAGATATCGTCCGATTGAAGACGAGTTTAACTCTCCAAACCTAGCTGAGTTACAAAAGTACCTAACTGATGAGGATCACAGCATTGCTGTGGGAATTTATATTTTGCTTCGTGCTGTTGATCGGTTTGCTGCTAATTACAACCGTTTTCCTGGACATGCCACTTTGGCTGATGACCTTATCAATGAGATGTGTCGATTTGGTGCTTCAGAACTTCATGCTGTTGCTGCTTTGGTCGGAGGAATTGCATCACAAGAAGTGATCAAGCTCATAACCAGGCAATTTGTACCAATAACGGGGACCTACATATTCAACGGCATTGACCACAAGTCACAGCTATTGTTATTGTAA

Protein sequence

>Msa0678730

MAEPKVKYDRQLRIWGDQGQAALEKSNICLLNCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFLVDEASLGESKAKCVCSFLQELNDAVKAKYIEEYPDKLIETNPSFFSQFTLVVATQLVESSMVKLDKICREANVILIFARSYGLAGFVRISLKEHTVIESKPEHFLDDLRLNNPWPELKRFAEGFDLNVQDPVAHKHIPYVVILVKTADEWAKSHGGRLPSTREEKKEFKDLLKAGMVAPDEDNYKEAMESSFKVFAPRGISSELQLILNDSSVEVDSSSSDFWVLVAALKDFVANEGGGEAPLEGSIPDMTSSTEQYVNLQNIYQAKAEADFLAIERMARNTLKKIGRDPNSIPRATIKSFCKNARKLKVCRYRPIEDEFNSPNLAELQKYLTDEDHSIAVGIYILLRAVDRFAANYNRFPGHATLADDLINEMCRFGASELHAVAALVGGIASQEVIKLITRQFVPITGTYIFNGIDHKSQLLLL*