AlfalfaGEDB | Msa0091560

M. sativa cultivar zhongmu-4 / Msa0091560

KEGG: K11373
GO: -
PFAM: PF04762.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091560	sp\|Q9FNA4\|ELP1_ARATH	57.346	1334	508	14	1	1289	1	1318	0.0	1506

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091560	A0A072VSS4	95.083	1322	34	1	1	1291	1	1322	0.0	2585

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0091560	0.801577	8.431370e-49	-8.615850e-47
Msa0008200	Msa0091560	0.813143	2.970999e-51	-8.615850e-47
Msa0011960	Msa0091560	0.809229	2.098250e-50	-8.615850e-47
Msa0019390	Msa0091560	0.812205	4.766545e-51	-8.615850e-47
Msa0021220	Msa0091560	0.850317	1.835798e-60	-8.615850e-47
Msa0030200	Msa0091560	0.816978	4.183702e-52	-8.615850e-47
Msa0033950	Msa0091560	0.813960	1.964849e-51	-8.615850e-47
Msa0034030	Msa0091560	0.814996	1.158873e-51	-8.615850e-47
Msa0037770	Msa0091560	0.941175	6.560855e-101	-8.615850e-47
Msa0043660	Msa0091560	0.838594	2.621731e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091560	MtrunA17_Chr1g0212491	95.083	1322	34	1	1	1291	1	1322	0.0	2585

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091560	AT5G13680.1	57.346	1334	508	14	1	1289	1	1318	0.0	1506

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Find 297 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCCTGGATTACTG+TGG	0.690388	1_2:+73695704	Msa0091560:CDS
AAACACTGTTTCAGTATGAG+AGG	0.584971	1_2:-73693812	None:intergenic
AAACGAGTATGCACATACTT+TGG	0.480825	1_2:+73697379	Msa0091560:CDS
AAACTTGGGAAGAACTAGAG+GGG	0.708599	1_2:+73693770	Msa0091560:CDS
AAACTTTCAATTGTCTCAGA+TGG	0.522114	1_2:+73697313	Msa0091560:CDS
AAAGCATCTTCAAGTAATGG+AGG	0.600148	1_2:-73695029	None:intergenic
AAATGCAGCTAACTGGTTCT+TGG	0.362564	1_2:-73693704	None:intergenic
AAATTACCCCATAGACAACA+AGG	0.668564	1_2:+73694905	Msa0091560:CDS
AAATTTATTAATTTCTGCAA+GGG	0.541462	1_2:+73695745	Msa0091560:CDS
AACATCTCCACAGTAATCCA+GGG	0.635223	1_2:-73695711	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGAAGGTGATTTATGTT+TGG	+	chr1_2:73692039-73692058	Msa0091560:intron	30.0%
TCAAGTTAGAATCAATATGG+AGG	+	chr1_2:73692143-73692162	Msa0091560:intron	30.0%
GAACTCTAGTTAACTTCTAT+CGG	-	chr1_2:73692693-73692712	None:intergenic	30.0%
TTCAGATGGAGAAAACTTTA+TGG	+	chr1_2:73693000-73693019	Msa0091560:intron	30.0%
TATCACGGAAACTTAAGATT+TGG	+	chr1_2:73693092-73693111	Msa0091560:CDS	30.0%
ATCACGGAAACTTAAGATTT+GGG	+	chr1_2:73693093-73693112	Msa0091560:CDS	30.0%
GAAAGAAGCAAATTTAGTGT+TGG	+	chr1_2:73693274-73693293	Msa0091560:CDS	30.0%
AGTATCTAATTTCATGCTTC+AGG	-	chr1_2:73693426-73693445	None:intergenic	30.0%
GTTAGGCTAAATAAGTACAT+AGG	-	chr1_2:73693640-73693659	None:intergenic	30.0%
GTACATGAGAAGAAAATGTT+AGG	-	chr1_2:73693657-73693676	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	73691430	73697779	73691430	ID=Msa0091560;Name=Msa0091560
chr1_2	mRNA	73691430	73697779	73691430	ID=Msa0091560-mRNA-1;Parent=Msa0091560;Name=Msa0091560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.75\|0.8\|1\|0.75\|0.6\|5\|260\|1291
chr1_2	exon	73691430	73691841	73691430	ID=Msa0091560-mRNA-1:exon:25901;Parent=Msa0091560-mRNA-1
chr1_2	exon	73693005	73696050	73693005	ID=Msa0091560-mRNA-1:exon:25902;Parent=Msa0091560-mRNA-1
chr1_2	exon	73696950	73697048	73696950	ID=Msa0091560-mRNA-1:exon:25903;Parent=Msa0091560-mRNA-1
chr1_2	exon	73697169	73697710	73697169	ID=Msa0091560-mRNA-1:exon:25904;Parent=Msa0091560-mRNA-1
chr1_2	exon	73697743	73697779	73697743	ID=Msa0091560-mRNA-1:exon:25905;Parent=Msa0091560-mRNA-1
chr1_2	CDS	73691430	73691841	73691430	ID=Msa0091560-mRNA-1:cds;Parent=Msa0091560-mRNA-1
chr1_2	CDS	73693005	73696050	73693005	ID=Msa0091560-mRNA-1:cds;Parent=Msa0091560-mRNA-1
chr1_2	CDS	73696950	73697048	73696950	ID=Msa0091560-mRNA-1:cds;Parent=Msa0091560-mRNA-1
chr1_2	CDS	73697169	73697487	73697169	ID=Msa0091560-mRNA-1:cds;Parent=Msa0091560-mRNA-1
chr1_2	three_prime_UTR	73697488	73697710	73697488	ID=Msa0091560-mRNA-1:three_prime_utr;Parent=Msa0091560-mRNA-1
chr1_2	three_prime_UTR	73697743	73697779	73697743	ID=Msa0091560-mRNA-1:three_prime_utr;Parent=Msa0091560-mRNA-1

Gene Sequence

>Msa0091560

ATGAAAAACCTAAAACTCTTCCGTGAAGTTCCTTTACTTCTCCGATTAAACTCCGACGACGAAACTTTCCGATTCTCCGCCTTAGACATCGAACGCAACCGTCTCTTCTTCCTCTCTTCCCACAATTTCATCTACACTTCCCATCTCTCTTCCTTCCACCAAAAACAAGCTTGGAGTAACAACAACTCGTCATTATCTACTACTCATGCCATCGTTGATCTTGAACCTGATGATACCGTTACTTCCTTCGATTATCTCATGGAGAAAGAAGCGCTTCTACTTGGAACTTCGAACGGGCTTTTGTTGCTATTTGATGTTGATGCGAACGTGACTCAAGTTGTTGGTAATGTTGATGGCGGTGTTAATTGTATTTCGCTTAGTCCTGATGGTGAAGTTATTGCTGTAGTTACTGATGGAGAAAACTTTATGGAGCAACATCCTATATCATGGCGAGGAGATGGAAAATACTTTGCTACGATGAGTATGTGTGGTTCTAATTTATCACGGAAACTTAAGATTTGGGAACGAGATTCAGGAGCATTACTTGCCTCTTCAGAGGAAAAAGCTTTTGCAGGAGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTATATGATAGAAAAGCTGAAAATGAATCCCCCTCCGTTGTTTTCTTTGAGAGAAATGGATTAGAAAGAAGCAAATTTAGTGTTGGTGAAGGAATTAATGCGAAAGTAAGATTTCTGAAGTGGAATTGCAGTTCTGATCTTCTTGCTGGTGTTGTTGAATGTGAAAATTATGAGGCTCTAAAGATATGGTATTTTAGCAACAATCATTGGTACCTGAAGCATGAAATTAGATACTTAAAGCAAGACGAAGTCAGGTTCATGTGGAATCAAGAAAAACCTTTGCAGTTGATTTGTTGGACTCTTGGTGGTCAGGTTACAGTTTACAATTTTGTTTGGATCACGGCTATTACGGACAATTCCGTTGCACTAGTCATCGATGGCTCCAATATTCATGTAACACCACTTTCCTTATCCTTAATGCCGCCTCCTATGTACTTATTTAGCCTAACATTTTCTTCTCATGTACGGGGTATGGCAGTATACTGTAAAAACTCCAAGAACCAGTTAGCTGCATTTCTTTCAGATGGTAGTTTATGTGTTGTAGAGCTTCCATCAATTGAAACTTGGGAAGAACTAGAGGGGCAAGAATTCAGTGTTGAAGCCTCTCATACTGAAACAGTGTTTGGATCCACATTACATCTTGTATGGTTAGATTCACATACGCTGTTATCTGTTTCCCATTATGGTTTCAGTCACAGCAATGACTTATTCCAAAGCTCACTAAATGAGGGTGCACTTCGAGGCTTCTATTTGCAGGAAATAGAATTGGAATGTTCCGAGGATATTGTTCCAGGATTGCTGACATGTTCAGGTTGGAATGCAACAGTTTCTAAGCAAAATACACTTGAAGAGCTTGTTATTGGCATTGCTCCAAATCCTGCCAGTAAATATTCTGCATATATGCAGTTTTCTGATGGGAAAATCAACGAGTATTTATCGAAAATTGTCACTGGTGGCGGATCTTTGGAACAAGAATATCAAGGTTTTTCTGCAGCCTGCCCTTGGATGGATGTAGCGTTGGTCGGAAGTGCTGGCCAGTCAAAACCAGTGCTTTTTGGACTGGACGAGATTGGCAGATTGCATGCTAGCGGGGGGATAGTAGTTTGCAACAACTGCAGCAGTTTCTCATTTTACTCGAATTTGGCAGATCAAGTTGTGACACATCTAATTCTTGCAACTAAACAAGATCTGCTTTTTATTGTTGACATTGTCGATATATTTAATGGGGAGTTAGACTCAAAGTATGGGAATTTTGTCCGCAGTAACAGCAGAAAAAGGGAAAAAAATGAAAATTACATACATATATGGGAGAGAGGTGCTAAAATAGTTGGAGTTTTACATGGAGACGAAGCTGCCACTATACTACAAACTACTCGGGGAAACCTAGAATGTATATACCCTAGAAAATTGGTTTTGGTTTCTATCATTAATGCCTTAGTTCAAAAGCGATTTAGAGATGCATTACTCATGGTTAGGAGACATAGGATAGATTTCAATGTAATTGTTGATTACCGTGGTTGGCAAGCTTTTTCACAGTCAGCCTTTGAATTTGTCAGGCAGGTCAACAATTTGGGTTACATAACTGAGTTTGTTTGTTCTGTAAAGAATGAAAATGTTATAGAGACACTCTACAAAAATCATGTGTCCGTTCCCTGTTCAGAGGTTGCTAATGTTATGCTAGCTGGAGGCCTCCAAAATTACCCCATAGACAACAAGGTTTCTTCAATTCTGATGGCCATAAGAAAAGCACTTGAAGACCATTTTACAGAAAGCCCTGCTAGGGAGCTTTGCATATTAACCACACTTGCTCGGAGTGAGCCTCCATTACTTGAAGATGCTTTAAAGAGAATAAAAGTTATCCGTGAAAAGGAGTTGTCTCATGCTGATGATCACAGGAGAATGACCTACCCTTCTGCTGAAGAAGCTTTGAAACATCTGTTGTGGTTGGCCGATGGGGATGCTGTCTATGATGCTGCTTTGGGTCTTTATGATTTAAAACTCACCGCTATTGTGGCATTGAATGCCCAAAAAGATCCAAAAGAATTTCTTCCTTTCTTGCAAGAGTTGGAGCGTATGCCTACACCATTAATGCAATACAATATCGACCTTAGGCTGAAAAGGTTCGAAAAGGCTCTCAGACATATTGCTTCTGCCGGCGATTCTTATTATGATGATTGTATGACACTGGTGAAGAAAAACCCTCAACTTTTCCCCTTGTCTCTTCAACTTTTTACTGACCCTGCTAAGAGGATGTCATTCCTTGAGGCATGGGGTGATTATCTTAGCGGTGAAAAATGCTTTGAAGATGCTGCAACAATTTACTTGTCCTGTTTCAATCTGGATAAGGCTCTTAAGTCTTATCGTGCTATTAATAACTGGAGTGGGGTGCTTACAGTTGCTGGGTTCCTTAATCTGGGAAAGGATGAAGTACTGCATCTTGCCGGTGAGCTTTGCGAAGAACTTCAAGCACTTGGTAAGCCTGGTGAAGCTGCCAAAATTGCCCTGGATTACTGTGGAGATGTTAACTCTGGTGTAAATTTATTAATTTCTGCAAGGGATTGGGAGGAGGCTATGAGGGTTGTTTTTATGCATAGAAGAGAGGACTTAGTTAAGGTTGTGAAGGATGCATCTGTTGAATGTGCAAGCACACTTACCAATGAATATGAGGAAGGCTTAGAGAAAGTAGGGAAGTACTTGGCCCGTTACTTAGCTGTTCGACAAAGAAGGCTACTTCTCGCAGCAAAGCTCCAATCAGAGAAACGTGAAGGTAGTGATGTTGAAGATGATGCTGCTTCAGAGGCTAGCAGTAATTTTAGTGGAATGAGTGCATACACCACAGGGACCAGGAAAAGTTCTGCTGCTTCTACTCTTTCAGCTGCAACTACCAGGGCAAGAGATGCTAGGCGTCAGAGGAAAAGAGGAAAAATCCGTCCTGGGAGTGCTGATGAGGAGTTTGCGTTGGTGGATCATTTGAAAGGCATGTCTATGAGAGTGGAAGCAAGACGAGAGCTGAAATCTTTGTTGGTTTCCCTTATGATGTTTGGTGAGGGTGAAACTGCAAGGAAGCTACAGCAAATGGGGGAAAACTTTCAATTGTCTCAGATGGCAGCAGTCAGATTAGCTGAGGATACAATATCAAATGATACCATAAACGAGTATGCACATACTTTGGAGCAATATACCCGAAAAGTAAGGGATGAAATGCATGATTCAGAGGCTTTGTCGTGGCGGGTCAAAGTTTTTTTAAGCAACGAGTGA

Protein sequence

>Msa0091560

MKNLKLFREVPLLLRLNSDDETFRFSALDIERNRLFFLSSHNFIYTSHLSSFHQKQAWSNNNSSLSTTHAIVDLEPDDTVTSFDYLMEKEALLLGTSNGLLLLFDVDANVTQVVGNVDGGVNCISLSPDGEVIAVVTDGENFMEQHPISWRGDGKYFATMSMCGSNLSRKLKIWERDSGALLASSEEKAFAGAVLEWMPSGAKIAAVYDRKAENESPSVVFFERNGLERSKFSVGEGINAKVRFLKWNCSSDLLAGVVECENYEALKIWYFSNNHWYLKHEIRYLKQDEVRFMWNQEKPLQLICWTLGGQVTVYNFVWITAITDNSVALVIDGSNIHVTPLSLSLMPPPMYLFSLTFSSHVRGMAVYCKNSKNQLAAFLSDGSLCVVELPSIETWEELEGQEFSVEASHTETVFGSTLHLVWLDSHTLLSVSHYGFSHSNDLFQSSLNEGALRGFYLQEIELECSEDIVPGLLTCSGWNATVSKQNTLEELVIGIAPNPASKYSAYMQFSDGKINEYLSKIVTGGGSLEQEYQGFSAACPWMDVALVGSAGQSKPVLFGLDEIGRLHASGGIVVCNNCSSFSFYSNLADQVVTHLILATKQDLLFIVDIVDIFNGELDSKYGNFVRSNSRKREKNENYIHIWERGAKIVGVLHGDEAATILQTTRGNLECIYPRKLVLVSIINALVQKRFRDALLMVRRHRIDFNVIVDYRGWQAFSQSAFEFVRQVNNLGYITEFVCSVKNENVIETLYKNHVSVPCSEVANVMLAGGLQNYPIDNKVSSILMAIRKALEDHFTESPARELCILTTLARSEPPLLEDALKRIKVIREKELSHADDHRRMTYPSAEEALKHLLWLADGDAVYDAALGLYDLKLTAIVALNAQKDPKEFLPFLQELERMPTPLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMTLVKKNPQLFPLSLQLFTDPAKRMSFLEAWGDYLSGEKCFEDAATIYLSCFNLDKALKSYRAINNWSGVLTVAGFLNLGKDEVLHLAGELCEELQALGKPGEAAKIALDYCGDVNSGVNLLISARDWEEAMRVVFMHRREDLVKVVKDASVECASTLTNEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEKREGSDVEDDAASEASSNFSGMSAYTTGTRKSSAASTLSAATTRARDARRQRKRGKIRPGSADEEFALVDHLKGMSMRVEARRELKSLLVSLMMFGEGETARKLQQMGENFQLSQMAAVRLAEDTISNDTINEYAHTLEQYTRKVRDEMHDSEALSWRVKVFLSNE*