Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693370 | XP_003607895.1 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693370 | sp|Q39211|NRPB3_ARATH | 81.562 | 320 | 56 | 2 | 1 | 318 | 1 | 319 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693370 | Q2MGQ5 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014990 | Msa0693370 | 0.830274 | 3.221404e-55 | -8.615850e-47 |
| Msa0028420 | Msa0693370 | 0.812678 | 3.756141e-51 | -8.615850e-47 |
| Msa0032430 | Msa0693370 | 0.803038 | 4.218293e-49 | -8.615850e-47 |
| Msa0054480 | Msa0693370 | 0.825423 | 4.726243e-54 | -8.615850e-47 |
| Msa0090360 | Msa0693370 | 0.829656 | 4.556379e-55 | -8.615850e-47 |
| Msa0607050 | Msa0693370 | 0.812423 | 4.271285e-51 | -8.615850e-47 |
| Msa0615710 | Msa0693370 | 0.810765 | 9.793953e-51 | -8.615850e-47 |
| Msa0625720 | Msa0693370 | 0.826641 | 2.426945e-54 | -8.615850e-47 |
| Msa0649490 | Msa0693370 | 0.801857 | 7.386620e-49 | -8.615850e-47 |
| Msa0663390 | Msa0693370 | 0.839990 | 1.138464e-57 | -8.615850e-47 |
| Msa0689260 | Msa0693370 | 0.820552 | 6.457975e-53 | -8.615850e-47 |
| Msa0690150 | Msa0693370 | 0.823332 | 1.466265e-53 | -8.615850e-47 |
| Msa0692040 | Msa0693370 | -0.802241 | 6.158449e-49 | -8.615850e-47 |
| Msa0692950 | Msa0693370 | 0.803844 | 2.870724e-49 | -8.615850e-47 |
| Msa0693370 | Msa0693650 | 0.804719 | 1.887399e-49 | -8.615850e-47 |
| Msa0693370 | Msa0709400 | 0.805403 | 1.357907e-49 | -8.615850e-47 |
| Msa0693370 | Msa0711780 | 0.815388 | 9.486591e-52 | -8.615850e-47 |
| Msa0693370 | Msa0716830 | 0.820430 | 6.886364e-53 | -8.615850e-47 |
| Msa0693370 | Msa0764830 | 0.800758 | 1.239976e-48 | -8.615850e-47 |
| Msa0693370 | Msa0794670 | 0.822645 | 2.120589e-53 | -8.615850e-47 |
| Msa0693370 | Msa0876190 | 0.801576 | 8.434662e-49 | -8.615850e-47 |
| Msa0693370 | Msa0902760 | 0.812970 | 3.242506e-51 | -8.615850e-47 |
| Msa0693370 | Msa0966400 | 0.804947 | 1.691437e-49 | -8.615850e-47 |
| Msa0693370 | Msa0979730 | 0.818779 | 1.640114e-52 | -8.615850e-47 |
| Msa0693370 | Msa1013400 | 0.817286 | 3.567483e-52 | -8.615850e-47 |
| Msa0693370 | Msa1078170 | 0.810631 | 1.047348e-50 | -8.615850e-47 |
| Msa0693370 | Msa1081930 | 0.806831 | 6.796022e-50 | -8.615850e-47 |
| Msa0693370 | Msa1081980 | 0.814472 | 1.514239e-51 | -8.615850e-47 |
| Msa0693370 | Msa1093530 | 0.813810 | 2.119736e-51 | -8.615850e-47 |
| Msa0693370 | Msa1100050 | 0.813097 | 3.041831e-51 | -8.615850e-47 |
| Msa0693370 | Msa1102740 | 0.811075 | 8.393063e-51 | -8.615850e-47 |
| Msa0693370 | Msa1123380 | 0.800792 | 1.220593e-48 | -8.615850e-47 |
| Msa0693370 | Msa1124960 | 0.805361 | 1.385418e-49 | -8.615850e-47 |
| Msa0693370 | Msa1128600 | 0.809127 | 2.206444e-50 | -8.615850e-47 |
| Msa0693370 | Msa1165920 | 0.809243 | 2.083827e-50 | -8.615850e-47 |
| Msa0693370 | Msa1165940 | 0.820464 | 6.763982e-53 | -8.615850e-47 |
| Msa0693370 | Msa1189070 | 0.800010 | 1.761323e-48 | -8.615850e-47 |
| Msa0693370 | Msa1225700 | 0.809646 | 1.707494e-50 | -8.615850e-47 |
| Msa0693370 | Msa1244600 | 0.806254 | 8.992745e-50 | -8.615850e-47 |
| Msa0693370 | Msa1251160 | 0.801707 | 7.929204e-49 | -8.615850e-47 |
| Msa0693370 | Msa1284550 | 0.803498 | 3.388182e-49 | -8.615850e-47 |
| Msa0693370 | Msa1294820 | 0.816892 | 4.373987e-52 | -8.615850e-47 |
| Msa0693370 | Msa1305660 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa0693370 | Msa1328710 | 0.801773 | 7.687276e-49 | -8.615850e-47 |
| Msa0693370 | Msa1353980 | 0.809216 | 2.111209e-50 | -8.615850e-47 |
| Msa0693370 | Msa1358250 | 0.818097 | 2.341022e-52 | -8.615850e-47 |
| Msa0693370 | Msa1370070 | -0.813966 | 1.958885e-51 | -8.615850e-47 |
| Msa0693370 | Msa1375560 | 0.801905 | 7.220462e-49 | -8.615850e-47 |
| Msa0693370 | Msa1382560 | 0.810270 | 1.252921e-50 | -8.615850e-47 |
| Msa0693370 | Msa1391770 | 0.800532 | 1.378866e-48 | -8.615850e-47 |
| Msa0693370 | Msa1392780 | 0.810872 | 9.289157e-51 | -8.615850e-47 |
| Msa0693370 | Msa1392880 | 0.808375 | 3.194588e-50 | -8.615850e-47 |
| Msa0693370 | Msa1433390 | 0.821211 | 4.554326e-53 | -8.615850e-47 |
| Msa0693370 | Msa1451160 | 0.823435 | 1.387262e-53 | -8.615850e-47 |
| Msa0137840 | Msa0693370 | 0.816000 | 6.929744e-52 | -8.615850e-47 |
| Msa0140820 | Msa0693370 | 0.802921 | 4.459096e-49 | -8.615850e-47 |
| Msa0148060 | Msa0693370 | 0.822890 | 1.859044e-53 | -8.615850e-47 |
| Msa0168500 | Msa0693370 | 0.800471 | 1.419211e-48 | -8.615850e-47 |
| Msa0184040 | Msa0693370 | 0.826117 | 3.234889e-54 | -8.615850e-47 |
| Msa0229230 | Msa0693370 | 0.844094 | 9.350299e-59 | -8.615850e-47 |
| Msa0395820 | Msa0693370 | 0.828554 | 8.427488e-55 | -8.615850e-47 |
| Msa0402650 | Msa0693370 | 0.816826 | 4.526953e-52 | -8.615850e-47 |
| Msa0449210 | Msa0693370 | 0.825540 | 4.433797e-54 | -8.615850e-47 |
| Msa0481530 | Msa0693370 | 0.844811 | 5.999130e-59 | -8.615850e-47 |
| Msa0273900 | Msa0693370 | 0.809798 | 1.583422e-50 | -8.615850e-47 |
| Msa0309770 | Msa0693370 | 0.805589 | 1.241018e-49 | -8.615850e-47 |
| Msa0497490 | Msa0693370 | 0.817871 | 2.633641e-52 | -8.615850e-47 |
| Msa0529890 | Msa0693370 | 0.829516 | 4.927385e-55 | -8.615850e-47 |
| Msa0531180 | Msa0693370 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
| Msa0532070 | Msa0693370 | 0.833560 | 4.971272e-56 | -8.615850e-47 |
| Msa0551890 | Msa0693370 | 0.821597 | 3.709565e-53 | -8.615850e-47 |
| Msa0557070 | Msa0693370 | 0.832487 | 9.191271e-56 | -8.615850e-47 |
| Msa0557320 | Msa0693370 | 0.833970 | 3.927824e-56 | -8.615850e-47 |
| Msa0569200 | Msa0693370 | 0.811197 | 7.895527e-51 | -8.615850e-47 |
| Msa0585560 | Msa0693370 | 0.835326 | 1.790977e-56 | -8.615850e-47 |
| Msa0590990 | Msa0693370 | 0.804622 | 1.977415e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693370 | MtrunA17_Chr4g0043761 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| Msa0693370 | MtrunA17_Chr3g0102701 | 31.861 | 317 | 175 | 8 | 11 | 295 | 87 | 394 | 2.95e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693370 | AT2G15430.1 | 81.562 | 320 | 56 | 2 | 1 | 318 | 1 | 319 | 0.0 | 536 |
| Msa0693370 | AT2G15400.1 | 75.235 | 319 | 78 | 1 | 1 | 318 | 1 | 319 | 2.80e-177 | 493 |
| Msa0693370 | AT2G15430.2 | 77.350 | 234 | 50 | 2 | 1 | 232 | 1 | 233 | 2.64e-132 | 376 |
| Msa0693370 | AT2G15430.3 | 76.763 | 241 | 53 | 2 | 1 | 239 | 1 | 240 | 3.42e-132 | 376 |
| Msa0693370 | AT2G15400.2 | 72.174 | 230 | 63 | 1 | 1 | 229 | 1 | 230 | 1.05e-117 | 339 |
| Msa0693370 | AT1G60620.2 | 30.868 | 311 | 177 | 7 | 11 | 295 | 17 | 315 | 1.37e-33 | 126 |
| Msa0693370 | AT1G60620.1 | 30.868 | 311 | 177 | 7 | 11 | 295 | 82 | 380 | 5.01e-33 | 125 |
| Msa0693370 | AT1G60850.2 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.44e-33 | 125 |
| Msa0693370 | AT1G60850.4 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.44e-33 | 125 |
| Msa0693370 | AT1G60850.1 | 30.225 | 311 | 178 | 7 | 11 | 295 | 75 | 372 | 8.44e-33 | 125 |
| Msa0693370 | AT1G60850.3 | 34.906 | 212 | 106 | 5 | 11 | 196 | 75 | 280 | 8.72e-26 | 104 |
Find 91 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAGTTGAGTTTCATCTT+AGG | 0.271624 | 4_4:-62288436 | Msa0693370:CDS |
| TTTGACACTTGAGGAGAAAA+AGG | 0.302144 | 4_4:-62287111 | Msa0693370:CDS |
| TAGTAGTAACTGAGCATCTT+AGG | 0.304736 | 4_4:+62285355 | None:intergenic |
| AATTGATTAGAATATGCTTT+TGG | 0.333821 | 4_4:-62285105 | Msa0693370:three_prime_UTR |
| GTTACTCCGGTGGATGTTCC+TGG | 0.334842 | 4_4:-62288347 | Msa0693370:CDS |
| CAAGATTAAGTTGAAGCTTT+GGG | 0.338217 | 4_4:-62285218 | Msa0693370:three_prime_UTR |
| TGCTCAGTTACTACTATATT+AGG | 0.356880 | 4_4:-62285348 | Msa0693370:three_prime_UTR |
| CTTCTGCTTGAGAATTTCAA+TGG | 0.357410 | 4_4:+62285551 | None:intergenic |
| GTTGAAGCTGATGATCAATT+TGG | 0.361165 | 4_4:-62285498 | Msa0693370:CDS |
| TCAAGATTAAGTTGAAGCTT+TGG | 0.365391 | 4_4:-62285219 | Msa0693370:three_prime_UTR |
| TCACATCAATGAGGATTTGA+TGG | 0.370656 | 4_4:-62287138 | Msa0693370:CDS |
| TTCAGTTGAGTTTCATCTTA+GGG | 0.374933 | 4_4:-62288435 | Msa0693370:CDS |
| CTAGCGTCGCCAACGCGCTC+CGG | 0.382501 | 4_4:-62288649 | Msa0693370:CDS |
| TGTAGTCGTCTTTGAGTTCA+CGG | 0.407857 | 4_4:+62288699 | None:intergenic |
| GCAGAAGCAATGGGAAAGCC+TGG | 0.442666 | 4_4:-62285663 | Msa0693370:CDS |
| TCATCATAACTATATGCCTC+AGG | 0.443043 | 4_4:+62285702 | None:intergenic |
| AGTTGCTGCTGGTGACCATT+TGG | 0.448661 | 4_4:+62287187 | None:intergenic |
| CGACGCGCCTTCCATTGTTA+AGG | 0.464353 | 4_4:+62288748 | None:intergenic |
| AGGCAAACCTGCTGTGTGAC+AGG | 0.471461 | 4_4:+62287047 | None:intergenic |
| GACGTTGGATGTTAGTAGTA+AGG | 0.475900 | 4_4:-62288393 | Msa0693370:CDS |
| CGCGTTGGCGACGCTAGCGT+CGG | 0.476685 | 4_4:+62288655 | None:intergenic |
| TGAAATTCTCAAGCAGAAGC+TGG | 0.482693 | 4_4:-62285547 | Msa0693370:CDS |
| TCCTCATTGATGTGAATGTC+TGG | 0.483050 | 4_4:+62287146 | None:intergenic |
| ACTGAGAGCGATTGCTAGGA+AGG | 0.484416 | 4_4:-62287228 | Msa0693370:CDS |
| TGATGATCAATTTGGTGAGC+TGG | 0.488837 | 4_4:-62285490 | Msa0693370:CDS |
| TCTTTCTCCTTAACAATGGA+AGG | 0.498182 | 4_4:-62288755 | Msa0693370:exon |
| CTAAGAGCAACTCCATTGCT+TGG | 0.501928 | 4_4:-62285133 | Msa0693370:three_prime_UTR |
| TTGAGATGCTTTGACTGCTC+CGG | 0.502938 | 4_4:+62285587 | None:intergenic |
| TCTTAGGGTTAAGTGTATAA+CGG | 0.507140 | 4_4:-62288420 | Msa0693370:CDS |
| ACGTGAGAAGCGCATGGCCA+TGG | 0.507484 | 4_4:+62288499 | None:intergenic |
| TGAGACTGAGAGCGATTGCT+AGG | 0.516563 | 4_4:-62287232 | Msa0693370:CDS |
| ATCAAGAAAGCAGAAGCAAT+GGG | 0.525337 | 4_4:-62285672 | Msa0693370:CDS |
| ACAACTAGATTTATGTTACC+TGG | 0.525374 | 4_4:-62285316 | Msa0693370:three_prime_UTR |
| TGTGAAGTTGAGGAGAGGTC+AGG | 0.526667 | 4_4:-62287258 | Msa0693370:CDS |
| TATTGATCCTGTCACACAGC+AGG | 0.526854 | 4_4:-62287054 | Msa0693370:intron |
| TTCAACAAGGTCGATGGCGA+TGG | 0.534984 | 4_4:+62288601 | None:intergenic |
| GCAGTTATTTCTATAAGCCC+AGG | 0.541886 | 4_4:+62285645 | None:intergenic |
| TTCGATTTCAACAAGGTCGA+TGG | 0.544241 | 4_4:+62288595 | None:intergenic |
| GATGCTTCTGTTGAATCTGA+TGG | 0.545347 | 4_4:-62288320 | Msa0693370:CDS |
| TTCATCTTTCTCCTTAACAA+TGG | 0.546125 | 4_4:-62288759 | Msa0693370:exon |
| GATGGAGTCTTTGACACTTG+AGG | 0.549742 | 4_4:-62287120 | Msa0693370:CDS |
| GGATTATCATTGTGAAGTTG+AGG | 0.552832 | 4_4:-62287268 | Msa0693370:CDS |
| TCAATATCAAAGACACGAGT+AGG | 0.554647 | 4_4:+62287071 | None:intergenic |
| TCGGTAAGGATCATGCCAAA+TGG | 0.554925 | 4_4:-62287202 | Msa0693370:CDS |
| TGAGAGCGATTGCTAGGAAG+GGG | 0.558513 | 4_4:-62287226 | Msa0693370:CDS |
| ATGAATGCTGAGAAGAAATG+TGG | 0.560731 | 4_4:+62288777 | None:intergenic |
| CATCACGCGCCGGAGCGCGT+TGG | 0.561690 | 4_4:+62288640 | None:intergenic |
| ATCAATTGTGAACCAAGCAA+TGG | 0.562941 | 4_4:+62285121 | None:intergenic |
| ACTCACAAGCGAACGTGCCA+TGG | 0.569511 | 4_4:-62288516 | Msa0693370:CDS |
| CACCGGAGTAACGGTATGAT+CGG | 0.570614 | 4_4:+62288358 | None:intergenic |
| CTGAGAGCGATTGCTAGGAA+GGG | 0.570973 | 4_4:-62287227 | Msa0693370:CDS |
| AACTCTTTGAATCAAATATG+CGG | 0.573333 | 4_4:-62285269 | Msa0693370:three_prime_UTR |
| CTTCTGTTGAATCTGATGGA+AGG | 0.575113 | 4_4:-62288316 | Msa0693370:intron |
| CGATCATACCGTTACTCCGG+TGG | 0.575290 | 4_4:-62288357 | Msa0693370:CDS |
| GATCAAGAAAGCAGAAGCAA+TGG | 0.576120 | 4_4:-62285673 | Msa0693370:CDS |
| TGCTAGGAAGGGGATCGGTA+AGG | 0.577965 | 4_4:-62287216 | Msa0693370:CDS |
| TTAACTCAACAGCTGAAATG+TGG | 0.580778 | 4_4:-62285394 | Msa0693370:three_prime_UTR |
| CAGAAGCAATGGGAAAGCCT+GGG | 0.582279 | 4_4:-62285662 | Msa0693370:CDS |
| ATGGCACGTTCGCTTGTGAG+TGG | 0.583334 | 4_4:+62288518 | None:intergenic |
| GAGTTCATCGCTCACAGACT+CGG | 0.584109 | 4_4:-62288548 | Msa0693370:CDS |
| AGGAACATCCACCGGAGTAA+CGG | 0.584181 | 4_4:+62288349 | None:intergenic |
| ACCTGGTTTGCTAGAAACAG+TGG | 0.591272 | 4_4:-62285299 | Msa0693370:three_prime_UTR |
| ACAAGGTCGATGGCGATGGT+AGG | 0.593898 | 4_4:+62288605 | None:intergenic |
| GATGAACTCGTCGTTCAGAA+CGG | 0.596567 | 4_4:+62288562 | None:intergenic |
| CGTGACTGTGATGCTTGTGA+TGG | 0.599792 | 4_4:-62288479 | Msa0693370:CDS |
| GATGATCAATTTGGTGAGCT+GGG | 0.599917 | 4_4:-62285489 | Msa0693370:CDS |
| ACCACTGTTTCTAGCAAACC+AGG | 0.604249 | 4_4:+62285298 | None:intergenic |
| GATGGCGATGGTAGGAACTT+CGG | 0.612991 | 4_4:+62288613 | None:intergenic |
| CATCATAACTATATGCCTCA+GGG | 0.615098 | 4_4:+62285703 | None:intergenic |
| TCAACAGAAGCATCACCACC+AGG | 0.615579 | 4_4:+62288329 | None:intergenic |
| TGTGATGCTTGTGATGGTGA+TGG | 0.622311 | 4_4:-62288473 | Msa0693370:CDS |
| CTCCGATCATACCGTTACTC+CGG | 0.622448 | 4_4:-62288360 | Msa0693370:CDS |
| TCACCACCAGGAACATCCAC+CGG | 0.625792 | 4_4:+62288341 | None:intergenic |
| GCGATTGCTAGGAAGGGGAT+CGG | 0.627906 | 4_4:-62287221 | Msa0693370:CDS |
| ATCATTGTGAAGTTGAGGAG+AGG | 0.635073 | 4_4:-62287263 | Msa0693370:CDS |
| ACAGTGAACTATTACATTGG+GGG | 0.642840 | 4_4:-62288824 | None:intergenic |
| ATGAAAGTAACAGTTGCTGC+TGG | 0.644886 | 4_4:+62287176 | None:intergenic |
| GGCATATAGTTATGATGATG+AGG | 0.651134 | 4_4:-62285697 | Msa0693370:CDS |
| ACAGTCACGTGAGAAGCGCA+TGG | 0.655640 | 4_4:+62288493 | None:intergenic |
| CTTCGGAAATCATCACGCGC+CGG | 0.659935 | 4_4:+62288630 | None:intergenic |
| AGTTCACTTCGATTTCAACA+AGG | 0.663781 | 4_4:+62288588 | None:intergenic |
| TGAGCATCTTAGGTTCAAAG+AGG | 0.670782 | 4_4:+62285365 | None:intergenic |
| TGAATGCTGAGAAGAAATGT+GGG | 0.674752 | 4_4:+62288778 | None:intergenic |
| AGCAGAAGCTGGATGCTGTG+AGG | 0.686847 | 4_4:-62285536 | Msa0693370:CDS |
| ACCAGACATTCACATCAATG+AGG | 0.691647 | 4_4:-62287147 | Msa0693370:CDS |
| GGTGGTGGTAGTTGACCCTG+AGG | 0.702152 | 4_4:-62285718 | Msa0693370:CDS |
| GTGTATAACGGATCAGACGT+TGG | 0.703684 | 4_4:-62288408 | Msa0693370:CDS |
| GAGCTGGGTGCACATATGCG+AGG | 0.705973 | 4_4:-62285474 | Msa0693370:CDS |
| CTGGGTGCACATATGCGAGG+AGG | 0.741311 | 4_4:-62285471 | Msa0693370:CDS |
| TGTGAGGCTATCTGAAGACA+CGG | 0.745035 | 4_4:-62285520 | Msa0693370:CDS |
| ACTCCGGTGGATGTTCCTGG+TGG | 0.749174 | 4_4:-62288344 | Msa0693370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATCAGTTTTTTATAA+TGG | - | chr4_4:62285652-62285671 | Msa0693370:CDS | 10.0% |
| !! | ATGAAAATACCAAAAAATTA+AGG | - | chr4_4:62287441-62287460 | Msa0693370:intron | 15.0% |
| !! | GTAAATATGATATTAATATC+TGG | - | chr4_4:62287746-62287765 | Msa0693370:intron | 15.0% |
| !!! | AAGTAACAATGAATTTTTTA+AGG | + | chr4_4:62288110-62288129 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTCTTCTCATTA+GGG | + | chr4_4:62285641-62285660 | None:intergenic | 20.0% |
| !!! | TATAAGCTATTTCTATAACA+AGG | - | chr4_4:62285827-62285846 | Msa0693370:intron | 20.0% |
| !!! | TTTGGTTTTATGTTTTCAAA+TGG | - | chr4_4:62286021-62286040 | Msa0693370:intron | 20.0% |
| !!! | TTGGTTTTATGTTTTCAAAT+GGG | - | chr4_4:62286022-62286041 | Msa0693370:intron | 20.0% |
| !! | GAATCTATAATTAGACATAA+TGG | + | chr4_4:62287384-62287403 | None:intergenic | 20.0% |
| !!! | GTGATTTTTTTGTATTGATT+AGG | - | chr4_4:62288159-62288178 | Msa0693370:intron | 20.0% |
| !!! | ATTTTTTTGTATTGATTAGG+TGG | - | chr4_4:62288162-62288181 | Msa0693370:intron | 20.0% |
| !!! | AATTGATTAGAATATGCTTT+TGG | - | chr4_4:62288793-62288812 | Msa0693370:five_prime_UTR | 20.0% |
| !!! | CTGATTTTTTTCTTCTCATT+AGG | + | chr4_4:62285642-62285661 | None:intergenic | 25.0% |
| ! | TAAAACCAAAATGAGAACAA+GGG | + | chr4_4:62286011-62286030 | None:intergenic | 25.0% |
| ! | ATAAAACCAAAATGAGAACA+AGG | + | chr4_4:62286012-62286031 | None:intergenic | 25.0% |
| ! | AATTAAGCTGTTTACCTATA+GGG | + | chr4_4:62286202-62286221 | None:intergenic | 25.0% |
| ! | AAATTAAGCTGTTTACCTAT+AGG | + | chr4_4:62286203-62286222 | None:intergenic | 25.0% |
| ! | TAAGCTATGTCTATAACAAA+AGG | - | chr4_4:62286322-62286341 | Msa0693370:intron | 25.0% |
| !! | AATGAGATTAAAGGTATGTT+TGG | + | chr4_4:62286509-62286528 | None:intergenic | 25.0% |
| ! | TACCTTTAATCTCATTTAGA+TGG | - | chr4_4:62286513-62286532 | Msa0693370:intron | 25.0% |
| ! | AACCATCTAAATGAGATTAA+AGG | + | chr4_4:62286518-62286537 | None:intergenic | 25.0% |
| !!! | GTTTTAATGTTGGGTTTATT+CGG | - | chr4_4:62286570-62286589 | Msa0693370:intron | 25.0% |
| !!! | TTTTTGTTTATGCTGAATGT+AGG | - | chr4_4:62286606-62286625 | Msa0693370:intron | 25.0% |
| !!! | TTTTGTTTATGCTGAATGTA+GGG | - | chr4_4:62286607-62286626 | Msa0693370:intron | 25.0% |
| !! | CTTTCGATTTTGTGTTTAAA+TGG | - | chr4_4:62287006-62287025 | Msa0693370:intron | 25.0% |
| ! | AAGATCATATCAGAAAGTAA+AGG | + | chr4_4:62287263-62287282 | None:intergenic | 25.0% |
| ! | TTACAAACAATCACAAATAG+AGG | - | chr4_4:62287311-62287330 | Msa0693370:intron | 25.0% |
| ! | TACCAAAAAATTAAGGTTGT+TGG | - | chr4_4:62287448-62287467 | Msa0693370:intron | 25.0% |
| !!! | TTCCAACAACCTTAATTTTT+TGG | + | chr4_4:62287453-62287472 | None:intergenic | 25.0% |
| ! | TTGTTGGAAAAATAGAAAGT+GGG | - | chr4_4:62287464-62287483 | Msa0693370:intron | 25.0% |
| ! | TTGATCTTAGAACAAATGTT+GGG | - | chr4_4:62287653-62287672 | Msa0693370:intron | 25.0% |
| ! | CCTAAGAATCATTATCAAAT+TGG | + | chr4_4:62287709-62287728 | None:intergenic | 25.0% |
| !!! | CCAATTTGATAATGATTCTT+AGG | - | chr4_4:62287706-62287725 | Msa0693370:intron | 25.0% |
| !! | TAATGATTCTTAGGCTTTAA+AGG | - | chr4_4:62287715-62287734 | Msa0693370:intron | 25.0% |
| !! | ATTTAAAATCCTGCTTATGA+TGG | - | chr4_4:62287769-62287788 | Msa0693370:intron | 25.0% |
| !! | ATAAGAGTATGTAAAACACT+TGG | + | chr4_4:62287913-62287932 | None:intergenic | 25.0% |
| !! | TCGTACTTCAAATTCATTTT+AGG | - | chr4_4:62287954-62287973 | Msa0693370:intron | 25.0% |
| ! | TTTATTACTATGAATCCACT+AGG | - | chr4_4:62287987-62288006 | Msa0693370:intron | 25.0% |
| !!! | TTTTAAGGAACAATACATCA+AGG | + | chr4_4:62288095-62288114 | None:intergenic | 25.0% |
| ! | GTACAATAAATTACCTTAAG+CGG | + | chr4_4:62288135-62288154 | None:intergenic | 25.0% |
| ! | AACTCTTTGAATCAAATATG+CGG | - | chr4_4:62288629-62288648 | Msa0693370:CDS | 25.0% |
| TTCATCTTTCTCCTTAACAA+TGG | - | chr4_4:62285139-62285158 | Msa0693370:three_prime_UTR | 30.0% | |
| TTCAGTTGAGTTTCATCTTA+GGG | - | chr4_4:62285463-62285482 | Msa0693370:exon | 30.0% | |
| TCTTAGGGTTAAGTGTATAA+CGG | - | chr4_4:62285478-62285497 | Msa0693370:CDS | 30.0% | |
| ! | GCTTTTCTTAGATTTCAACT+GGG | - | chr4_4:62285674-62285693 | Msa0693370:CDS | 30.0% |
| TTTGAATGTGATTGTGTGTA+TGG | - | chr4_4:62285726-62285745 | Msa0693370:intron | 30.0% | |
| TTGAATGTGATTGTGTGTAT+GGG | - | chr4_4:62285727-62285746 | Msa0693370:intron | 30.0% | |
| !!! | AGAACGAACAGTTTTGTTTT+AGG | - | chr4_4:62285770-62285789 | Msa0693370:intron | 30.0% |
| ! | TTTTCAAATGTGACATGCAT+GGG | - | chr4_4:62286054-62286073 | Msa0693370:intron | 30.0% |
| AGAACAAACAGTTATGTTGT+AGG | - | chr4_4:62286103-62286122 | Msa0693370:intron | 30.0% | |
| AGTTATGTTGTAGGATCTTT+GGG | - | chr4_4:62286112-62286131 | Msa0693370:intron | 30.0% | |
| TATACGCATAGCTTATTCAT+AGG | + | chr4_4:62286244-62286263 | None:intergenic | 30.0% | |
| AATAAGCTATGCGTATAACA+AGG | - | chr4_4:62286247-62286266 | Msa0693370:intron | 30.0% | |
| ! | GATTAAAGGTATGTTTGGAT+TGG | + | chr4_4:62286504-62286523 | None:intergenic | 30.0% |
| TTTGTTTATGCTGAATGTAG+GGG | - | chr4_4:62286608-62286627 | Msa0693370:intron | 30.0% | |
| !! | ATGTTTTGAATAGATCGTGT+GGG | - | chr4_4:62287230-62287249 | Msa0693370:CDS | 30.0% |
| TTACTTCACACTTTCATTCT+AGG | - | chr4_4:62287282-62287301 | Msa0693370:intron | 30.0% | |
| ! | ATCCTGATGTAGTGTTTTAT+GGG | + | chr4_4:62287351-62287370 | None:intergenic | 30.0% |
| ! | TATCCTGATGTAGTGTTTTA+TGG | + | chr4_4:62287352-62287371 | None:intergenic | 30.0% |
| GTTGTTGGAAAAATAGAAAG+TGG | - | chr4_4:62287463-62287482 | Msa0693370:intron | 30.0% | |
| TGTTGGAAAAATAGAAAGTG+GGG | - | chr4_4:62287465-62287484 | Msa0693370:intron | 30.0% | |
| CTTGATCTTAGAACAAATGT+TGG | - | chr4_4:62287652-62287671 | Msa0693370:intron | 30.0% | |
| TGATCTTAGAACAAATGTTG+GGG | - | chr4_4:62287654-62287673 | Msa0693370:intron | 30.0% | |
| ! | CATTATCAAATTGGTAGCTT+GGG | + | chr4_4:62287700-62287719 | None:intergenic | 30.0% |
| ! | TCATTATCAAATTGGTAGCT+TGG | + | chr4_4:62287701-62287720 | None:intergenic | 30.0% |
| TTACATACTCTTATCTTGTG+TGG | - | chr4_4:62287919-62287938 | Msa0693370:intron | 30.0% | |
| ATTCTTGATCAATGCTAAGT+CGG | - | chr4_4:62288028-62288047 | Msa0693370:intron | 30.0% | |
| !!! | TTTTTGTATTGATTAGGTGG+TGG | - | chr4_4:62288165-62288184 | Msa0693370:intron | 30.0% |
| TGCTCAGTTACTACTATATT+AGG | - | chr4_4:62288550-62288569 | Msa0693370:CDS | 30.0% | |
| ACAACTAGATTTATGTTACC+TGG | - | chr4_4:62288582-62288601 | Msa0693370:CDS | 30.0% | |
| !! | TCAAGATTAAGTTGAAGCTT+TGG | - | chr4_4:62288679-62288698 | Msa0693370:CDS | 30.0% |
| !! | CAAGATTAAGTTGAAGCTTT+GGG | - | chr4_4:62288680-62288699 | Msa0693370:CDS | 30.0% |
| TGAATGCTGAGAAGAAATGT+GGG | + | chr4_4:62285123-62285142 | None:intergenic | 35.0% | |
| ATGAATGCTGAGAAGAAATG+TGG | + | chr4_4:62285124-62285143 | None:intergenic | 35.0% | |
| TCTTTCTCCTTAACAATGGA+AGG | - | chr4_4:62285143-62285162 | Msa0693370:three_prime_UTR | 35.0% | |
| AGTTCACTTCGATTTCAACA+AGG | + | chr4_4:62285313-62285332 | None:intergenic | 35.0% | |
| GTTCAGTTGAGTTTCATCTT+AGG | - | chr4_4:62285462-62285481 | Msa0693370:exon | 35.0% | |
| ! | GGCTTTTCTTAGATTTCAAC+TGG | - | chr4_4:62285673-62285692 | Msa0693370:CDS | 35.0% |
| TGATTGTGTGTATGGGTTTA+GGG | - | chr4_4:62285734-62285753 | Msa0693370:intron | 35.0% | |
| !!! | AGAGAGTTTTGGAAATAAGC+TGG | - | chr4_4:62285895-62285914 | Msa0693370:intron | 35.0% |
| ! | GTTTTCAAATGTGACATGCA+TGG | - | chr4_4:62286053-62286072 | Msa0693370:intron | 35.0% |
| CAGTTATGTTGTAGGATCTT+TGG | - | chr4_4:62286111-62286130 | Msa0693370:intron | 35.0% | |
| AACTAGGATGTTTACCCAAA+GGG | + | chr4_4:62286273-62286292 | None:intergenic | 35.0% | |
| TAACTAGGATGTTTACCCAA+AGG | + | chr4_4:62286274-62286293 | None:intergenic | 35.0% | |
| TTGCTATAAAGCTCGTAACT+AGG | + | chr4_4:62286289-62286308 | None:intergenic | 35.0% | |
| GAAAACAGCTTACAGCTTAA+TGG | + | chr4_4:62286369-62286388 | None:intergenic | 35.0% | |
| TCACTCAGCATCAATGAAAA+TGG | + | chr4_4:62286550-62286569 | None:intergenic | 35.0% | |
| !! | TGCTGAGTGAGTTTTAATGT+TGG | - | chr4_4:62286560-62286579 | Msa0693370:intron | 35.0% |
| !! | GCTGAGTGAGTTTTAATGTT+GGG | - | chr4_4:62286561-62286580 | Msa0693370:intron | 35.0% |
| TTAATGTTGGGTTTATTCGG+AGG | - | chr4_4:62286573-62286592 | Msa0693370:intron | 35.0% | |
| TTGTTTATGCTGAATGTAGG+GGG | - | chr4_4:62286609-62286628 | Msa0693370:intron | 35.0% | |
| GGATTATCATTGTGAAGTTG+AGG | - | chr4_4:62286630-62286649 | Msa0693370:intron | 35.0% | |
| TCACATCAATGAGGATTTGA+TGG | - | chr4_4:62286760-62286779 | Msa0693370:intron | 35.0% | |
| TTTGACACTTGAGGAGAAAA+AGG | - | chr4_4:62286787-62286806 | Msa0693370:intron | 35.0% | |
| TCAATATCAAAGACACGAGT+AGG | + | chr4_4:62286830-62286849 | None:intergenic | 35.0% | |
| CTAAGGAAGCGAATAAGAAT+AGG | + | chr4_4:62286874-62286893 | None:intergenic | 35.0% | |
| CTATTCTTATTCGCTTCCTT+AGG | - | chr4_4:62286872-62286891 | Msa0693370:intron | 35.0% | |
| ! | TATTCGCTTCCTTAGGATTT+TGG | - | chr4_4:62286879-62286898 | Msa0693370:intron | 35.0% |
| ! | ACTGATTTCACATGTAATGC+TGG | - | chr4_4:62286915-62286934 | Msa0693370:intron | 35.0% |
| ATGATACTTAGTTGTGCACT+TGG | - | chr4_4:62286950-62286969 | Msa0693370:intron | 35.0% | |
| AAGACAGAAAGGCAAGTATT+TGG | + | chr4_4:62286989-62287008 | None:intergenic | 35.0% | |
| CACAAAATCGAAAGACAGAA+AGG | + | chr4_4:62287000-62287019 | None:intergenic | 35.0% | |
| AGAGTGGAAAATGCAATTAG+AGG | - | chr4_4:62287163-62287182 | Msa0693370:CDS | 35.0% | |
| !! | GATGTTTTGAATAGATCGTG+TGG | - | chr4_4:62287229-62287248 | Msa0693370:CDS | 35.0% |
| AAAACACTACATCAGGATAG+TGG | - | chr4_4:62287353-62287372 | Msa0693370:intron | 35.0% | |
| AAACACTACATCAGGATAGT+GGG | - | chr4_4:62287354-62287373 | Msa0693370:intron | 35.0% | |
| GTTGGAAAAATAGAAAGTGG+GGG | - | chr4_4:62287466-62287485 | Msa0693370:intron | 35.0% | |
| TTGGAAAAATAGAAAGTGGG+GGG | - | chr4_4:62287467-62287486 | Msa0693370:intron | 35.0% | |
| AGATCAAGCAATTACTAACC+AGG | + | chr4_4:62287640-62287659 | None:intergenic | 35.0% | |
| !! | CACAAGATAAAAGTACCTAG+TGG | + | chr4_4:62288005-62288024 | None:intergenic | 35.0% |
| AAGGAACAATACATCAAGGA+AGG | + | chr4_4:62288091-62288110 | None:intergenic | 35.0% | |
| CATCATAACTATATGCCTCA+GGG | + | chr4_4:62288198-62288217 | None:intergenic | 35.0% | |
| TCATCATAACTATATGCCTC+AGG | + | chr4_4:62288199-62288218 | None:intergenic | 35.0% | |
| ! | GGCATATAGTTATGATGATG+AGG | - | chr4_4:62288201-62288220 | Msa0693370:intron | 35.0% |
| ATCAAGAAAGCAGAAGCAAT+GGG | - | chr4_4:62288226-62288245 | Msa0693370:intron | 35.0% | |
| ! | GCAAGATAGCTTCATTTTCA+CGG | - | chr4_4:62288279-62288298 | Msa0693370:intron | 35.0% |
| ! | ATTTTCACGGTTGAATCAAC+CGG | - | chr4_4:62288292-62288311 | Msa0693370:intron | 35.0% |
| CTTCTGCTTGAGAATTTCAA+TGG | + | chr4_4:62288350-62288369 | None:intergenic | 35.0% | |
| GTTGAAGCTGATGATCAATT+TGG | - | chr4_4:62288400-62288419 | Msa0693370:CDS | 35.0% | |
| !! | GGATGATTTTGAAGGATTTC+AGG | - | chr4_4:62288448-62288467 | Msa0693370:CDS | 35.0% |
| TTAACTCAACAGCTGAAATG+TGG | - | chr4_4:62288504-62288523 | Msa0693370:CDS | 35.0% | |
| TAGTAGTAACTGAGCATCTT+AGG | + | chr4_4:62288546-62288565 | None:intergenic | 35.0% | |
| ATCAATTGTGAACCAAGCAA+TGG | + | chr4_4:62288780-62288799 | None:intergenic | 35.0% | |
| ! | TGTAGTCGTCTTTGAGTTCA+CGG | + | chr4_4:62285202-62285221 | None:intergenic | 40.0% |
| TTCGATTTCAACAAGGTCGA+TGG | + | chr4_4:62285306-62285325 | None:intergenic | 40.0% | |
| GACGTTGGATGTTAGTAGTA+AGG | - | chr4_4:62285505-62285524 | Msa0693370:CDS | 40.0% | |
| GATGCTTCTGTTGAATCTGA+TGG | - | chr4_4:62285578-62285597 | Msa0693370:CDS | 40.0% | |
| CTTCTGTTGAATCTGATGGA+AGG | - | chr4_4:62285582-62285601 | Msa0693370:CDS | 40.0% | |
| GTTGAATCTGATGGAAGGTT+CGG | - | chr4_4:62285587-62285606 | Msa0693370:CDS | 40.0% | |
| GTGATTGTGTGTATGGGTTT+AGG | - | chr4_4:62285733-62285752 | Msa0693370:intron | 40.0% | |
| !!! | CAGTTTTGTTTTAGGCCCTT+TGG | - | chr4_4:62285778-62285797 | Msa0693370:intron | 40.0% |
| ATGCTACAAGCACTTCCAAA+GGG | + | chr4_4:62285796-62285815 | None:intergenic | 40.0% | |
| TATGCTACAAGCACTTCCAA+AGG | + | chr4_4:62285797-62285816 | None:intergenic | 40.0% | |
| ! | GAAGCTATCGTAGAGAGTTT+TGG | - | chr4_4:62285884-62285903 | Msa0693370:intron | 40.0% |
| AATAAGCTGGAAACAGCTTG+TGG | - | chr4_4:62285908-62285927 | Msa0693370:intron | 40.0% | |
| TACCAAGCTAAGCATTTCTG+AGG | + | chr4_4:62285959-62285978 | None:intergenic | 40.0% | |
| AGAACAAGGGCTGTTTGTAT+TGG | + | chr4_4:62285998-62286017 | None:intergenic | 40.0% | |
| ! | AACAGCCCTTGTTCTCATTT+TGG | - | chr4_4:62286003-62286022 | Msa0693370:intron | 40.0% |
| TTGTAGGATCTTTGGGTGAA+CGG | - | chr4_4:62286119-62286138 | Msa0693370:intron | 40.0% | |
| GTCTGTGAAAAAGACCCTAT+AGG | - | chr4_4:62286185-62286204 | Msa0693370:intron | 40.0% | |
| CTACCATGAAAAGATACCCT+GGG | - | chr4_4:62286394-62286413 | Msa0693370:intron | 40.0% | |
| ATCATTGTGAAGTTGAGGAG+AGG | - | chr4_4:62286635-62286654 | Msa0693370:intron | 40.0% | |
| ATGAAAGTAACAGTTGCTGC+TGG | + | chr4_4:62286725-62286744 | None:intergenic | 40.0% | |
| ACCAGACATTCACATCAATG+AGG | - | chr4_4:62286751-62286770 | Msa0693370:intron | 40.0% | |
| TCCTCATTGATGTGAATGTC+TGG | + | chr4_4:62286755-62286774 | None:intergenic | 40.0% | |
| ACTTGAGGAGAAAAAGGAGT+GGG | - | chr4_4:62286793-62286812 | Msa0693370:intron | 40.0% | |
| !!! | GCTTCCTTAGGATTTTGGTT+AGG | - | chr4_4:62286884-62286903 | Msa0693370:intron | 40.0% |
| TGTGCCTAACCAAAATCCTA+AGG | + | chr4_4:62286891-62286910 | None:intergenic | 40.0% | |
| CCACTCTACTTCAACTCAAA+AGG | + | chr4_4:62287150-62287169 | None:intergenic | 40.0% | |
| !!! | CCTTTTGAGTTGAAGTAGAG+TGG | - | chr4_4:62287147-62287166 | Msa0693370:CDS | 40.0% |
| CTTCACACTTTCATTCTAGG+AGG | - | chr4_4:62287285-62287304 | Msa0693370:intron | 40.0% | |
| AACAATCACAAATAGAGGCG+TGG | - | chr4_4:62287316-62287335 | Msa0693370:intron | 40.0% | |
| TTTGACTGCAAACCGTAGTA+TGG | - | chr4_4:62287549-62287568 | Msa0693370:intron | 40.0% | |
| TTGACTGCAAACCGTAGTAT+GGG | - | chr4_4:62287550-62287569 | Msa0693370:intron | 40.0% | |
| TTTGAGTCATGCCCATACTA+CGG | + | chr4_4:62287564-62287583 | None:intergenic | 40.0% | |
| AACATTCCATGGCCAAAGTT+TGG | - | chr4_4:62287582-62287601 | Msa0693370:intron | 40.0% | |
| TTACTAACCAGGCACTACAA+AGG | + | chr4_4:62287629-62287648 | None:intergenic | 40.0% | |
| !! | TGTTGGGGATTTGCTATACT+TGG | - | chr4_4:62287669-62287688 | Msa0693370:intron | 40.0% |
| GGTAAACAACCATCATAAGC+AGG | + | chr4_4:62287781-62287800 | None:intergenic | 40.0% | |
| ! | TATTCTGCAGATGATGATGC+TGG | + | chr4_4:62287808-62287827 | None:intergenic | 40.0% |
| CTGCTGAAGCAATGCTTATA+AGG | - | chr4_4:62287843-62287862 | Msa0693370:intron | 40.0% | |
| ACAAGTCAAACAGAACCTAG+TGG | + | chr4_4:62288058-62288077 | None:intergenic | 40.0% | |
| ! | CATTGTTACTTGACCGCTTA+AGG | - | chr4_4:62288119-62288138 | Msa0693370:intron | 40.0% |
| GATCAAGAAAGCAGAAGCAA+TGG | - | chr4_4:62288225-62288244 | Msa0693370:intron | 40.0% | |
| !! | GCAGTTATTTCTATAAGCCC+AGG | + | chr4_4:62288256-62288275 | None:intergenic | 40.0% |
| TGAAATTCTCAAGCAGAAGC+TGG | - | chr4_4:62288351-62288370 | Msa0693370:CDS | 40.0% | |
| ! | TGATGATCAATTTGGTGAGC+TGG | - | chr4_4:62288408-62288427 | Msa0693370:CDS | 40.0% |
| ! | GATGATCAATTTGGTGAGCT+GGG | - | chr4_4:62288409-62288428 | Msa0693370:CDS | 40.0% |
| TGAGCATCTTAGGTTCAAAG+AGG | + | chr4_4:62288536-62288555 | None:intergenic | 40.0% | |
| GATGAACTCGTCGTTCAGAA+CGG | + | chr4_4:62285339-62285358 | None:intergenic | 45.0% | |
| ! | TGTGATGCTTGTGATGGTGA+TGG | - | chr4_4:62285425-62285444 | Msa0693370:three_prime_UTR | 45.0% |
| !! | GTGTATAACGGATCAGACGT+TGG | - | chr4_4:62285490-62285509 | Msa0693370:CDS | 45.0% |
| AGCCTCAGAAATGCTTAGCT+TGG | - | chr4_4:62285954-62285973 | Msa0693370:intron | 45.0% | |
| !!! | GACATGCATGGGTTTTGTTC+TGG | - | chr4_4:62286065-62286084 | Msa0693370:intron | 45.0% |
| ATGCGTATAACAAGGCCCTT+TGG | - | chr4_4:62286255-62286274 | Msa0693370:intron | 45.0% | |
| TGCGTATAACAAGGCCCTTT+GGG | - | chr4_4:62286256-62286275 | Msa0693370:intron | 45.0% | |
| GCTACCATGAAAAGATACCC+TGG | - | chr4_4:62286393-62286412 | Msa0693370:intron | 45.0% | |
| !! | CTTCCCAGGGTATCTTTTCA+TGG | + | chr4_4:62286400-62286419 | None:intergenic | 45.0% |
| TCGGTAAGGATCATGCCAAA+TGG | - | chr4_4:62286696-62286715 | Msa0693370:intron | 45.0% | |
| GATGGAGTCTTTGACACTTG+AGG | - | chr4_4:62286778-62286797 | Msa0693370:intron | 45.0% | |
| CACTTGAGGAGAAAAAGGAG+TGG | - | chr4_4:62286792-62286811 | Msa0693370:intron | 45.0% | |
| TATTGATCCTGTCACACAGC+AGG | - | chr4_4:62286844-62286863 | Msa0693370:intron | 45.0% | |
| CCATCATTGACCACAGAAAG+AGG | + | chr4_4:62287196-62287215 | None:intergenic | 45.0% | |
| CCTCTTTCTGTGGTCAATGA+TGG | - | chr4_4:62287193-62287212 | Msa0693370:CDS | 45.0% | |
| ! | TCACAAATAGAGGCGTGGAA+CGG | - | chr4_4:62287321-62287340 | Msa0693370:intron | 45.0% |
| GGCCCATAAAACACTACATC+AGG | - | chr4_4:62287346-62287365 | Msa0693370:intron | 45.0% | |
| !! | ACTACATCAGGATAGTGGGA+TGG | - | chr4_4:62287358-62287377 | Msa0693370:intron | 45.0% |
| GGCATGACTCAAACATTCCA+TGG | - | chr4_4:62287571-62287590 | Msa0693370:intron | 45.0% | |
| TGGTGACCACTACCAAACTT+TGG | + | chr4_4:62287597-62287616 | None:intergenic | 45.0% | |
| !! | GGGATTTGCTATACTTGGCA+TGG | - | chr4_4:62287674-62287693 | Msa0693370:intron | 45.0% |
| GCATTGCTTCAGCAGAAATG+AGG | + | chr4_4:62287838-62287857 | None:intergenic | 45.0% | |
| TTGAGATGCTTTGACTGCTC+CGG | + | chr4_4:62288314-62288333 | None:intergenic | 45.0% | |
| TGTGAGGCTATCTGAAGACA+CGG | - | chr4_4:62288378-62288397 | Msa0693370:CDS | 45.0% | |
| ! | TGCGAGGAGGATGATTTTGA+AGG | - | chr4_4:62288440-62288459 | Msa0693370:CDS | 45.0% |
| !! | ACCTGGTTTGCTAGAAACAG+TGG | - | chr4_4:62288599-62288618 | Msa0693370:CDS | 45.0% |
| !! | ACCACTGTTTCTAGCAAACC+AGG | + | chr4_4:62288603-62288622 | None:intergenic | 45.0% |
| CTAAGAGCAACTCCATTGCT+TGG | - | chr4_4:62288765-62288784 | Msa0693370:five_prime_UTR | 45.0% | |
| ! | AGTTCACGGATTTTCACGCG+CGG | + | chr4_4:62285188-62285207 | None:intergenic | 50.0% |
| GATGGCGATGGTAGGAACTT+CGG | + | chr4_4:62285288-62285307 | None:intergenic | 50.0% | |
| TTCAACAAGGTCGATGGCGA+TGG | + | chr4_4:62285300-62285319 | None:intergenic | 50.0% | |
| GAGTTCATCGCTCACAGACT+CGG | - | chr4_4:62285350-62285369 | Msa0693370:three_prime_UTR | 50.0% | |
| CGTGACTGTGATGCTTGTGA+TGG | - | chr4_4:62285419-62285438 | Msa0693370:three_prime_UTR | 50.0% | |
| CTCCGATCATACCGTTACTC+CGG | - | chr4_4:62285538-62285557 | Msa0693370:CDS | 50.0% | |
| CACCGGAGTAACGGTATGAT+CGG | + | chr4_4:62285543-62285562 | None:intergenic | 50.0% | |
| AGGAACATCCACCGGAGTAA+CGG | + | chr4_4:62285552-62285571 | None:intergenic | 50.0% | |
| !! | TCAACAGAAGCATCACCACC+AGG | + | chr4_4:62285572-62285591 | None:intergenic | 50.0% |
| ! | AAGATACCCTGGGAAGCGTA+TGG | - | chr4_4:62286404-62286423 | Msa0693370:intron | 50.0% |
| AGCTTTCCATACGCTTCCCA+GGG | + | chr4_4:62286413-62286432 | None:intergenic | 50.0% | |
| AAGCTTTCCATACGCTTCCC+AGG | + | chr4_4:62286414-62286433 | None:intergenic | 50.0% | |
| TGTGAAGTTGAGGAGAGGTC+AGG | - | chr4_4:62286640-62286659 | Msa0693370:intron | 50.0% | |
| TGAGACTGAGAGCGATTGCT+AGG | - | chr4_4:62286666-62286685 | Msa0693370:intron | 50.0% | |
| ACTGAGAGCGATTGCTAGGA+AGG | - | chr4_4:62286670-62286689 | Msa0693370:intron | 50.0% | |
| CTGAGAGCGATTGCTAGGAA+GGG | - | chr4_4:62286671-62286690 | Msa0693370:intron | 50.0% | |
| TGAGAGCGATTGCTAGGAAG+GGG | - | chr4_4:62286672-62286691 | Msa0693370:intron | 50.0% | |
| AGTTGCTGCTGGTGACCATT+TGG | + | chr4_4:62286714-62286733 | None:intergenic | 50.0% | |
| TGAGGAGAAAAAGGAGTGGG+TGG | - | chr4_4:62286796-62286815 | Msa0693370:intron | 50.0% | |
| AGGTGCTTGTCCTCTTTCTG+TGG | - | chr4_4:62287183-62287202 | Msa0693370:CDS | 50.0% | |
| ! | CACAAATAGAGGCGTGGAAC+GGG | - | chr4_4:62287322-62287341 | Msa0693370:intron | 50.0% |
| ATAGAAAGTGGGGGGCAAAG+TGG | - | chr4_4:62287475-62287494 | Msa0693370:intron | 50.0% | |
| TAGAAAGTGGGGGGCAAAGT+GGG | - | chr4_4:62287476-62287495 | Msa0693370:intron | 50.0% | |
| CCACTACCAAACTTTGGCCA+TGG | + | chr4_4:62287591-62287610 | None:intergenic | 50.0% | |
| CCATGGCCAAAGTTTGGTAG+TGG | - | chr4_4:62287588-62287607 | Msa0693370:intron | 50.0% | |
| !! | CAGGCACTACAAAGGTGTTG+CGG | + | chr4_4:62287621-62287640 | None:intergenic | 50.0% |
| ! | GCAGATGATGATGCTGGACA+TGG | + | chr4_4:62287802-62287821 | None:intergenic | 50.0% |
| CAGAAGCAATGGGAAAGCCT+GGG | - | chr4_4:62288236-62288255 | Msa0693370:intron | 50.0% | |
| CGACGCGCCTTCCATTGTTA+AGG | + | chr4_4:62285153-62285172 | None:intergenic | 55.0% | |
| CTTCGGAAATCATCACGCGC+CGG | + | chr4_4:62285271-62285290 | None:intergenic | 55.0% | |
| ACAAGGTCGATGGCGATGGT+AGG | + | chr4_4:62285296-62285315 | None:intergenic | 55.0% | |
| ATGGCACGTTCGCTTGTGAG+TGG | + | chr4_4:62285383-62285402 | None:intergenic | 55.0% | |
| ACTCACAAGCGAACGTGCCA+TGG | - | chr4_4:62285382-62285401 | Msa0693370:three_prime_UTR | 55.0% | |
| ! | ACAGTCACGTGAGAAGCGCA+TGG | + | chr4_4:62285408-62285427 | None:intergenic | 55.0% |
| CGATCATACCGTTACTCCGG+TGG | - | chr4_4:62285541-62285560 | Msa0693370:CDS | 55.0% | |
| GTTACTCCGGTGGATGTTCC+TGG | - | chr4_4:62285551-62285570 | Msa0693370:CDS | 55.0% | |
| TCACCACCAGGAACATCCAC+CGG | + | chr4_4:62285560-62285579 | None:intergenic | 55.0% | |
| GCGATTGCTAGGAAGGGGAT+CGG | - | chr4_4:62286677-62286696 | Msa0693370:intron | 55.0% | |
| TGCTAGGAAGGGGATCGGTA+AGG | - | chr4_4:62286682-62286701 | Msa0693370:intron | 55.0% | |
| AGGCAAACCTGCTGTGTGAC+AGG | + | chr4_4:62286854-62286873 | None:intergenic | 55.0% | |
| ! | AAATAGAGGCGTGGAACGGG+TGG | - | chr4_4:62287325-62287344 | Msa0693370:intron | 55.0% |
| !! | CACTACAAAGGTGTTGCGGC+TGG | + | chr4_4:62287617-62287636 | None:intergenic | 55.0% |
| CGCAACACCTTTGTAGTGCC+TGG | - | chr4_4:62287619-62287638 | Msa0693370:intron | 55.0% | |
| TGCTAAGTCGGTCAGCCACT+AGG | - | chr4_4:62288040-62288059 | Msa0693370:intron | 55.0% | |
| GCAGAAGCAATGGGAAAGCC+TGG | - | chr4_4:62288235-62288254 | Msa0693370:intron | 55.0% | |
| AGCAGAAGCTGGATGCTGTG+AGG | - | chr4_4:62288362-62288381 | Msa0693370:CDS | 55.0% | |
| ! | ACGTGAGAAGCGCATGGCCA+TGG | + | chr4_4:62285402-62285421 | None:intergenic | 60.0% |
| ACTCCGGTGGATGTTCCTGG+TGG | - | chr4_4:62285554-62285573 | Msa0693370:CDS | 60.0% | |
| ! | GGTGGTGGTAGTTGACCCTG+AGG | - | chr4_4:62288180-62288199 | Msa0693370:intron | 60.0% |
| GAGCTGGGTGCACATATGCG+AGG | - | chr4_4:62288424-62288443 | Msa0693370:CDS | 60.0% | |
| CTGGGTGCACATATGCGAGG+AGG | - | chr4_4:62288427-62288446 | Msa0693370:CDS | 60.0% | |
| ! | CGCGTTGGCGACGCTAGCGT+CGG | + | chr4_4:62285246-62285265 | None:intergenic | 70.0% |
| CTAGCGTCGCCAACGCGCTC+CGG | - | chr4_4:62285249-62285268 | Msa0693370:three_prime_UTR | 70.0% | |
| CATCACGCGCCGGAGCGCGT+TGG | + | chr4_4:62285261-62285280 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62285089 | 62288831 | 62285089 | ID=Msa0693370;Name=Msa0693370 |
| chr4_4 | mRNA | 62285089 | 62288831 | 62285089 | ID=Msa0693370-mRNA-1;Parent=Msa0693370;Name=Msa0693370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|1|1|1|1|1|3|378|318 |
| chr4_4 | exon | 62285089 | 62285739 | 62285089 | ID=Msa0693370-mRNA-1:exon:17398;Parent=Msa0693370-mRNA-1 |
| chr4_4 | exon | 62287055 | 62287292 | 62287055 | ID=Msa0693370-mRNA-1:exon:17397;Parent=Msa0693370-mRNA-1 |
| chr4_4 | exon | 62288317 | 62288831 | 62288317 | ID=Msa0693370-mRNA-1:exon:17396;Parent=Msa0693370-mRNA-1 |
| chr4_4 | five_prime_UTR | 62288763 | 62288831 | 62288763 | ID=Msa0693370-mRNA-1:five_prime_utr;Parent=Msa0693370-mRNA-1 |
| chr4_4 | CDS | 62288317 | 62288762 | 62288317 | ID=Msa0693370-mRNA-1:cds;Parent=Msa0693370-mRNA-1 |
| chr4_4 | CDS | 62287055 | 62287292 | 62287055 | ID=Msa0693370-mRNA-1:cds;Parent=Msa0693370-mRNA-1 |
| chr4_4 | CDS | 62285467 | 62285739 | 62285467 | ID=Msa0693370-mRNA-1:cds;Parent=Msa0693370-mRNA-1 |
| chr4_4 | three_prime_UTR | 62285089 | 62285466 | 62285089 | ID=Msa0693370-mRNA-1:three_prime_utr;Parent=Msa0693370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
