AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578860 MtrunA17_Chr4g0044041 93.773 546 29 2 1 541 1 546 0.0 854
Msa0578860 MtrunA17_Chr7g0267611 47.788 113 54 3 29 140 5 113 1.13e-25 102
Msa0578860 MtrunA17_Chr4g0008711 46.903 113 57 3 30 140 1 112 2.14e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578860 AT5G08780.1 34.014 147 66 5 61 197 40 165 4.97e-16 81.3

Find 173 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGAGGTTGTGTGAAAC+TGG 0.245357 4_1:-83537429 Msa0578860:CDS
TGTAGAGAGAGGGATGAATT+TGG 0.250723 4_1:-83537280 Msa0578860:CDS
GGCCTTCCTCTCTTTCTCTT+TGG 0.270119 4_1:+83534659 None:intergenic
GGTGATGATGATTCTATTCC+TGG 0.305283 4_1:+83534854 None:intergenic
CTCCACGGAGGAGGCGATTT+CGG 0.317455 4_1:-83537514 Msa0578860:CDS
TGTTCTACAATTCCCTCTTC+AGG 0.317518 4_1:+83536046 None:intergenic
ACAATGTGAAGAGGAATTAA+AGG 0.320847 4_1:-83534495 Msa0578860:CDS
TATAAATAGCAACTTAAATC+TGG 0.335322 4_1:+83534086 None:intergenic
ACGGAATTGAAAGACAAAAT+AGG 0.341816 4_1:-83537537 Msa0578860:CDS
AAATACACTTGGAAGTAGTT+TGG 0.353541 4_1:-83534041 Msa0578860:three_prime_UTR
ATGGTTGTGGCTTCAGCAGC+TGG 0.368019 4_1:+83534153 None:intergenic
AGGAAGGTGGTAAGGGTAGT+AGG 0.372318 4_1:-83536225 Msa0578860:CDS
GAGAGTGATCATCATTCAAT+TGG 0.384799 4_1:-83537219 Msa0578860:CDS
GGGTTAGAGAAGGGTTGAGT+TGG 0.395498 4_1:+83537777 None:intergenic
TACAATGAAGGAAATACTAA+TGG 0.397587 4_1:-83534734 Msa0578860:CDS
GGAAGAGAAGGAAGGTGGTA+AGG 0.398946 4_1:-83536233 Msa0578860:CDS
AGAAGGGATTGTTCTTCATC+AGG 0.400020 4_1:+83537875 None:intergenic
GGGTGGAAGGGGTTAGAGAA+GGG 0.414522 4_1:+83537768 None:intergenic
CGAGGTCGCGGTCGTGGTCG+AGG 0.415668 4_1:-83534224 Msa0578860:CDS
AGGGTAGTAGGAAGAGGAAG+AGG 0.416755 4_1:-83536213 Msa0578860:CDS
GGTTAGAGAAGGGTTGAGTT+GGG 0.420957 4_1:+83537778 None:intergenic
GAGCGATCGGTTAGGGTGGA+AGG 0.427550 4_1:+83537755 None:intergenic
GTTGTTGTTGATTGCGGAAT+CGG 0.434537 4_1:+83537844 None:intergenic
TTCATTTGTTGCAGATGGTA+AGG 0.435826 4_1:-83534925 Msa0578860:intron
ACTGGAAGAGACACAAATTC+AGG 0.438243 4_1:-83536017 Msa0578860:intron
CCTTGAACTTCACATGGTTG+TGG 0.448036 4_1:+83534140 None:intergenic
GGATGAATTTGGTTAGTGTT+GGG 0.448262 4_1:-83537269 Msa0578860:CDS
AGCGTAAGTGTGGTAGGAAG+AGG 0.450070 4_1:-83537341 Msa0578860:CDS
GGTAATAGAAGGGGTAATCG+TGG 0.452536 4_1:-83537309 Msa0578860:CDS
TGAAGGAAGAGCGATCGGTT+AGG 0.453267 4_1:+83537747 None:intergenic
CGTGAGACCGAAAACCTTTG+AGG 0.454036 4_1:-83537926 Msa0578860:five_prime_UTR
GAAGAGAAGGAAGGTGGTAA+GGG 0.456858 4_1:-83536232 Msa0578860:CDS
GAAGGAAGAGCGATCGGTTA+GGG 0.457840 4_1:+83537748 None:intergenic
ATATCACACACCTTGGCCTT+AGG 0.458811 4_1:+83534194 None:intergenic
AGTGAGAGTGATCGTTCAAT+TGG 0.461186 4_1:-83536097 Msa0578860:CDS
TTGTGTTTGTTAGATAGTGC+TGG 0.461779 4_1:-83536145 Msa0578860:CDS
GGGATGAATTTGGTTAGTGT+TGG 0.471644 4_1:-83537270 Msa0578860:CDS
GGGTAGTAGGAAGAGGAAGA+GGG 0.473741 4_1:-83536212 Msa0578860:CDS
GAAGCCATTGCTGCTTAAGC+GGG 0.474812 4_1:-83534603 Msa0578860:CDS
AATTGTAGAACATACTGAAC+TGG 0.475619 4_1:-83536035 Msa0578860:CDS
CACTCACCCTCCTTACGCCT+TGG 0.475697 4_1:-83537681 Msa0578860:intron
AGGGTGGAAGGGGTTAGAGA+AGG 0.478479 4_1:+83537767 None:intergenic
GATGATAAACAAGGCAATAA+CGG 0.480539 4_1:-83537556 Msa0578860:CDS
CCACAACCATGTGAAGTTCA+AGG 0.481145 4_1:-83534140 Msa0578860:three_prime_UTR
GAGGTCGCGGTCGTGGTCGA+GGG 0.482799 4_1:-83534223 Msa0578860:CDS
CGAGGTCGAGGTCGCAGTCA+AGG 0.482874 4_1:-83534320 Msa0578860:CDS
TGGTCGAGGGAGGCCTCCTA+AGG 0.484961 4_1:-83534210 Msa0578860:CDS
TGTGGTAGGAAGAGGAAGAG+AGG 0.485077 4_1:-83537333 Msa0578860:CDS
AAGTTGCGTGGCTGTGGTCG+AGG 0.485573 4_1:-83534242 Msa0578860:CDS
CGGAATCGGTGTGAAGAAGA+AGG 0.485922 4_1:+83537858 None:intergenic
AGCAGCTGGTTCCTCTGCTA+TGG 0.487094 4_1:+83534167 None:intergenic
GTGGTAGGAAGAGGAAGAGA+GGG 0.489978 4_1:-83537332 Msa0578860:CDS
AGAAGCTGGTGCCTCTGCTA+TGG 0.490222 4_1:+83534277 None:intergenic
AATTAAAGGAGTCAGAAGAA+AGG 0.491234 4_1:-83534481 Msa0578860:CDS
TGTGGTCGAGGTCGCGGTCG+TGG 0.491533 4_1:-83534230 Msa0578860:CDS
CAAGGTCGTGGTCGAGGTCG+AGG 0.495597 4_1:-83534332 Msa0578860:CDS
TGCATAATATCTACAGGTCC+AGG 0.497226 4_1:-83534872 Msa0578860:CDS
GTGGTAAGGGTAGTAGGAAG+AGG 0.497820 4_1:-83536219 Msa0578860:CDS
AAGAAAAGCGTAAGTGTGGT+AGG 0.499659 4_1:-83537347 Msa0578860:CDS
TAAGCAGCAATGGCTTCTCT+TGG 0.500886 4_1:+83534609 None:intergenic
CGTGGAGGAGATGTAGAGAG+AGG 0.502567 4_1:-83537291 Msa0578860:CDS
TTCTCTTCCTCACCATCAGC+CGG 0.502865 4_1:+83536247 None:intergenic
TGAAGAACAGACACAAGTTC+AGG 0.503161 4_1:-83537190 Msa0578860:intron
GCTATGGCATCACACACTTT+AGG 0.503874 4_1:+83534293 None:intergenic
TTAGCTTGATCTTCAGAAGC+TGG 0.503880 4_1:+83534263 None:intergenic
CAAGCTAAGTTGCGTGGCTG+TGG 0.504173 4_1:-83534248 Msa0578860:CDS
AGGCGTAAGGAGGGTGAGTG+GGG 0.506965 4_1:+83537684 None:intergenic
GGAAAGAAGAAGAAAAGTCA+AGG 0.508078 4_1:-83534460 Msa0578860:CDS
GAGATTGTGTGTAATGAGAA+TGG 0.508235 4_1:-83537405 Msa0578860:CDS
ATATGATGACGAGCGTCCTC+AGG 0.508681 4_1:-83534759 Msa0578860:CDS
CGTGGTCAAGGTCGTGGTCG+AGG 0.515259 4_1:-83534338 Msa0578860:CDS
CGTGGCTGTGGTCGAGGTCG+CGG 0.517882 4_1:-83534236 Msa0578860:CDS
CTCTCACTGACCTGTGTCGA+AGG 0.518222 4_1:+83536112 None:intergenic
CCAGAGTGCATAATATCTAC+AGG 0.518764 4_1:-83534878 Msa0578860:CDS
GAGGATTTACCGTGGGCACA+TGG 0.520496 4_1:-83537471 Msa0578860:CDS
AGATTGTGTGTAATGAGAAT+GGG 0.524129 4_1:-83537404 Msa0578860:CDS
AAGGCGTAAGGAGGGTGAGT+GGG 0.524250 4_1:+83537683 None:intergenic
GAGAAAGAAAAGCGTAAGTG+TGG 0.526594 4_1:-83537351 Msa0578860:CDS
AAGTTGCGTGGTCAAGGTCG+TGG 0.529047 4_1:-83534344 Msa0578860:CDS
CAAGCTAAGTTGCGTGGTCA+AGG 0.529296 4_1:-83534350 Msa0578860:CDS
GACCATCAGAGTCAGACATT+GGG 0.529678 4_1:+83534696 None:intergenic
GTGCATACCAAGGCGTAAGG+AGG 0.530586 4_1:+83537674 None:intergenic
GACTGAAGAGCCTTCGACAC+AGG 0.534825 4_1:-83536122 Msa0578860:CDS
AGTCGTGGAGACGGAGAGAG+TGG 0.538707 4_1:-83536175 Msa0578860:CDS
AATGGTCAAACTAGAGGTCG+AGG 0.539978 4_1:-83534548 Msa0578860:CDS
GCGATCGGTTAGGGTGGAAG+GGG 0.540317 4_1:+83537757 None:intergenic
TCAAGAGGTTGTGTGAAACT+GGG 0.540721 4_1:-83537428 Msa0578860:CDS
GGCTGAGTTGTTGTTGATTG+CGG 0.540840 4_1:+83537838 None:intergenic
CCATGTGAAGTTCAAGGTAG+AGG 0.544451 4_1:-83534134 Msa0578860:three_prime_UTR
GGTAGTAGGAAGAGGAAGAG+GGG 0.547007 4_1:-83536211 Msa0578860:CDS
GTGGAGGAGATGTAGAGAGA+GGG 0.548271 4_1:-83537290 Msa0578860:CDS
TGGTAGGAAGAGGAAGAGAG+GGG 0.548459 4_1:-83537331 Msa0578860:CDS
CGTCCTCAGGACTACAATGA+AGG 0.549124 4_1:-83534746 Msa0578860:CDS
AGCGATCGGTTAGGGTGGAA+GGG 0.549296 4_1:+83537756 None:intergenic
CAAAATAGGCTCCACGGAGG+AGG 0.549874 4_1:-83537523 Msa0578860:CDS
GAGGTCGAGGTCGCAGTCAA+GGG 0.552970 4_1:-83534319 Msa0578860:CDS
GGGGTGCATACCAAGGCGTA+AGG 0.554641 4_1:+83537671 None:intergenic
AGACCATCAGAGTCAGACAT+TGG 0.555075 4_1:+83534695 None:intergenic
TCACACACCTTGGCCTTAGG+AGG 0.555381 4_1:+83534197 None:intergenic
AGGTCGAGGGAGGCCTCGTA+AGG 0.558089 4_1:-83534534 Msa0578860:CDS
AATATCGACTGACATTGATA+CGG 0.558289 4_1:-83534813 Msa0578860:CDS
GATGGTGAGGAAGAGAAGGA+AGG 0.560114 4_1:-83536241 Msa0578860:CDS
AGGGAGGCCTCCTAAGGCCA+AGG 0.560781 4_1:-83534204 Msa0578860:CDS
GGCTGATGGTGAGGAAGAGA+AGG 0.561675 4_1:-83536245 Msa0578860:CDS
GACACAAATACAACCTGAAG+AGG 0.561834 4_1:-83536059 Msa0578860:CDS
GCTCCCCGCTTAAGCAGCAA+TGG 0.564948 4_1:+83534599 None:intergenic
CAAGGCGTAAGGAGGGTGAG+TGG 0.569476 4_1:+83537682 None:intergenic
GGTGAGGAAGAGAAGGAAGG+TGG 0.569819 4_1:-83536238 Msa0578860:CDS
CCTCTACCTTGAACTTCACA+TGG 0.571338 4_1:+83534134 None:intergenic
GGAGCGAAATTTATGCAGAA+AGG 0.573082 4_1:-83534904 Msa0578860:CDS
GTCGCGGTCGTGGTCGAGGG+AGG 0.573904 4_1:-83534220 Msa0578860:CDS
ACTGCACTAGTTTGTGCGAA+TGG 0.575058 4_1:-83534782 Msa0578860:CDS
ATTTGATGTGGCACCTGTGT+TGG 0.575188 4_1:+83534833 None:intergenic
GTCTGACTCTGATGGTCTTG+AGG 0.576545 4_1:-83534690 Msa0578860:CDS
AGAGGAAGAGGGGCAACACA+AGG 0.584115 4_1:-83536201 Msa0578860:CDS
TTTCCTTCATTGTAGTCCTG+AGG 0.585221 4_1:+83534743 None:intergenic
ATGCAACCAAAGAGAAAGAG+AGG 0.585795 4_1:-83534665 Msa0578860:CDS
TGTGTTTGTTAGATAGTGCT+GGG 0.586318 4_1:-83536144 Msa0578860:CDS
GAGTAGAAATTAAATACACT+TGG 0.587732 4_1:-83534052 Msa0578860:three_prime_UTR
AACCAAAGAGAAAGAGAGGA+AGG 0.590263 4_1:-83534661 Msa0578860:CDS
AGAAGCCATTGCTGCTTAAG+CGG 0.590614 4_1:-83534604 Msa0578860:CDS
TTGAAGGCGAGATTGAATGA+AGG 0.591874 4_1:+83537730 None:intergenic
ATATCGACTGACATTGATAC+GGG 0.591886 4_1:-83534812 Msa0578860:CDS
AGATACTGAACAATGTGAAG+AGG 0.591955 4_1:-83534504 Msa0578860:CDS
TCGTTCAATTGGAAGTGTTG+AGG 0.595171 4_1:-83536086 Msa0578860:CDS
TGCATACCAAGGCGTAAGGA+GGG 0.595429 4_1:+83537675 None:intergenic
AAGAAGAATAAGGAGCAGAA+TGG 0.598945 4_1:-83534566 Msa0578860:CDS
TTGAATGAAGGAAGAGCGAT+CGG 0.603334 4_1:+83537742 None:intergenic
CCTTTGAGGTATTCTCAACA+TGG 0.604055 4_1:-83537912 Msa0578860:exon
AGGATTTACCGTGGGCACAT+GGG 0.604105 4_1:-83537470 Msa0578860:CDS
GTCGAGGTCGCAGTCAAGGG+AGG 0.604121 4_1:-83534316 Msa0578860:CDS
CTCCGAAATCGCCTCCTCCG+TGG 0.604355 4_1:+83537512 None:intergenic
GGAAGAGCGATCGGTTAGGG+TGG 0.606329 4_1:+83537751 None:intergenic
CCATGTTGAGAATACCTCAA+AGG 0.610534 4_1:+83537912 None:intergenic
AGAATCAAGAGCAACCGCAC+AGG 0.610968 4_1:+83533992 None:intergenic
ACAAGGAGTAGTCGTGGAGA+CGG 0.612539 4_1:-83536184 Msa0578860:CDS
AAAATCTTCCCATGTGCCCA+CGG 0.616052 4_1:+83537462 None:intergenic
GGCAACACAAGGAGTAGTCG+TGG 0.619050 4_1:-83536190 Msa0578860:CDS
GGTAGGAAGAGGAAGAGAGG+GGG 0.619367 4_1:-83537330 Msa0578860:CDS
TGTGAAGTTCAAGGTAGAGG+TGG 0.619648 4_1:-83534131 Msa0578860:three_prime_UTR
AGAATCATCATCACCAACAC+AGG 0.622124 4_1:-83534846 Msa0578860:CDS
GGCGTAAGGAGGGTGAGTGG+GGG 0.625181 4_1:+83537685 None:intergenic
GGAATCGGTGTGAAGAAGAA+GGG 0.630426 4_1:+83537859 None:intergenic
GTATCTTGATTTACCTTACG+AGG 0.632699 4_1:+83534521 None:intergenic
CCTGTAGATATTATGCACTC+TGG 0.633026 4_1:+83534878 None:intergenic
GAAAGACAAAATAGGCTCCA+CGG 0.634693 4_1:-83537529 Msa0578860:CDS
GTCGTGGAGACGGAGAGAGT+GGG 0.635010 4_1:-83536174 Msa0578860:CDS
ATGTCAGTCGATATTTGATG+TGG 0.635873 4_1:+83534821 None:intergenic
ACACAAATACAACCTGAAGA+GGG 0.639932 4_1:-83536058 Msa0578860:CDS
CAAGAGGTTGTGTGAAACTG+GGG 0.643947 4_1:-83537427 Msa0578860:CDS
AACCCAATGTCTGACTCTGA+TGG 0.644248 4_1:-83534698 Msa0578860:CDS
AAAGATCAAGCTAAGTTGCG+TGG 0.646540 4_1:-83534356 Msa0578860:CDS
AGAATACGAGGATTTACCGT+GGG 0.647151 4_1:-83537478 Msa0578860:CDS
AAGCCATTGCTGCTTAAGCG+GGG 0.653882 4_1:-83534602 Msa0578860:CDS
GAAGATCAAGCTAAGTTGCG+TGG 0.658927 4_1:-83534254 Msa0578860:CDS
GAGCAGAATGGTCAAACTAG+AGG 0.663485 4_1:-83534554 Msa0578860:CDS
ATGGTCAAACTAGAGGTCGA+GGG 0.663574 4_1:-83534547 Msa0578860:CDS
TTGTGTGTAATGAGAATGGG+AGG 0.666092 4_1:-83537401 Msa0578860:CDS
GAATCAGATTCTGACTTACG+AGG 0.667216 4_1:+83534638 None:intergenic
TTAGATCAAGCTAAGTTGTG+TGG 0.670763 4_1:-83534401 Msa0578860:CDS
GTCAAACTAGAGGTCGAGGG+AGG 0.671711 4_1:-83534544 Msa0578860:CDS
GTGATATGATACCATAGCAG+AGG 0.675455 4_1:-83534178 Msa0578860:exon
TGAGTCTCTGAGTTGAGACA+TGG 0.677723 4_1:+83537817 None:intergenic
GTTTGTGAAGAGAGAATACG+AGG 0.685145 4_1:-83537490 Msa0578860:CDS
AGTGTGTGATGCCATAGCAG+AGG 0.686518 4_1:-83534288 Msa0578860:CDS
TGGTATCATATCACACACCT+TGG 0.693412 4_1:+83534187 None:intergenic
AATAGAAGGGGTAATCGTGG+AGG 0.703465 4_1:-83537306 Msa0578860:CDS
GATCAAGCTAAGTTGTGTGG+TGG 0.713983 4_1:-83534398 Msa0578860:CDS
TTGAGGTATTCTCAACATGG+CGG 0.723986 4_1:-83537909 Msa0578860:exon
AGTCATACATTATACCTGTG+CGG 0.725687 4_1:-83534006 Msa0578860:three_prime_UTR
GAGAATACGAGGATTTACCG+TGG 0.727570 4_1:-83537479 Msa0578860:CDS
GTGTGTGCAGATGATAAACA+AGG 0.750453 4_1:-83537565 Msa0578860:intron
AGACAAAATAGGCTCCACGG+AGG 0.776587 4_1:-83537526 Msa0578860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCAAAAATAAGATA+CGG + chr4_1:83535357-83535376 None:intergenic 10.0%
!! AAGTAATAATTGTTAAAAAA+TGG + chr4_1:83536703-83536722 None:intergenic 10.0%
!!! AATTATTACTTTAAAGAATT+AGG - chr4_1:83536712-83536731 Msa0578860:intron 10.0%
!!! TTTTTTTATTAATGTCGTAT+TGG + chr4_1:83534899-83534918 None:intergenic 15.0%
!! TAAATATAACAATATTCTAG+TGG + chr4_1:83534994-83535013 None:intergenic 15.0%
!! TGATTAAAAAAACACAAATT+TGG - chr4_1:83535035-83535054 Msa0578860:intron 15.0%
!! GATTAAAAAAACACAAATTT+GGG - chr4_1:83535036-83535055 Msa0578860:intron 15.0%
!!! AATTTTGCATTAATGAAAAA+AGG + chr4_1:83536841-83536860 None:intergenic 15.0%
!! TGAATTGTTGATATCAAATT+AGG + chr4_1:83536266-83536285 None:intergenic 20.0%
!! TAAAACTACGTAATCAAATT+AGG + chr4_1:83536310-83536329 None:intergenic 20.0%
!!! AAGTTTCTTTTGATGAATAT+TGG + chr4_1:83536610-83536629 None:intergenic 20.0%
!! TCTTGAAAGAAAAAAAAGTT+AGG + chr4_1:83536764-83536783 None:intergenic 20.0%
!! ATTACAAACTTGTGATTAAA+GGG + chr4_1:83536893-83536912 None:intergenic 20.0%
!! TATAAATAGCAACTTAAATC+TGG + chr4_1:83537826-83537845 None:intergenic 20.0%
!!! TTTGCTGTTTTGGTAATTTA+TGG - chr4_1:83534745-83534764 Msa0578860:CDS 25.0%
! AAAACTCAAAATGCAGAAAT+TGG - chr4_1:83534915-83534934 Msa0578860:intron 25.0%
! AAACTCAAAATGCAGAAATT+GGG - chr4_1:83534916-83534935 Msa0578860:intron 25.0%
!!! ATGATCTGTTTTGGAATTTT+TGG - chr4_1:83535919-83535938 Msa0578860:intron 25.0%
!!! TTGGAATTTTTGGCATTTAA+TGG - chr4_1:83535929-83535948 Msa0578860:intron 25.0%
!!! GTCTCATTAATTTGTATACA+TGG - chr4_1:83535975-83535994 Msa0578860:intron 25.0%
! TTGTATACATGGAAATATGA+AGG - chr4_1:83535986-83536005 Msa0578860:intron 25.0%
! ATTCACCCAATCAAAAAAAA+AGG - chr4_1:83536281-83536300 Msa0578860:intron 25.0%
!!! ATTACGTAGTTTTAGCTTTT+TGG - chr4_1:83536316-83536335 Msa0578860:intron 25.0%
! CTATACTTTACTGTTAATTG+TGG - chr4_1:83536544-83536563 Msa0578860:intron 25.0%
! GTTTAGAGAACAATTGAATA+AGG + chr4_1:83536588-83536607 None:intergenic 25.0%
! GATTACAAACTTGTGATTAA+AGG + chr4_1:83536894-83536913 None:intergenic 25.0%
!! TAAAATTCATTTGTTGCAGA+TGG - chr4_1:83536979-83536998 Msa0578860:intron 25.0%
! TACAATGAAGGAAATACTAA+TGG - chr4_1:83537175-83537194 Msa0578860:intron 25.0%
!!! AAATCTGGTTTTGATTTAAG+TGG + chr4_1:83537811-83537830 None:intergenic 25.0%
! GAGTAGAAATTAAATACACT+TGG - chr4_1:83537857-83537876 Msa0578860:CDS 25.0%
AAGAATGAAAAAGCTGTTGA+AGG + chr4_1:83534198-83534217 None:intergenic 30.0%
! CTCTATCTACATTACTGATT+TGG - chr4_1:83534273-83534292 Msa0578860:CDS 30.0%
GATGATAAACAAGGCAATAA+CGG - chr4_1:83534353-83534372 Msa0578860:CDS 30.0%
ACGGAATTGAAAGACAAAAT+AGG - chr4_1:83534372-83534391 Msa0578860:CDS 30.0%
AGATTGTGTGTAATGAGAAT+GGG - chr4_1:83534505-83534524 Msa0578860:CDS 30.0%
ACAAATCATATGAATGGTCA+GGG + chr4_1:83535114-83535133 None:intergenic 30.0%
TACAAATCATATGAATGGTC+AGG + chr4_1:83535115-83535134 None:intergenic 30.0%
TCGACTACAAATCATATGAA+TGG + chr4_1:83535120-83535139 None:intergenic 30.0%
TAGAGTTAAAGACGTGTTAA+AGG - chr4_1:83535232-83535251 Msa0578860:intron 30.0%
GAAGCAATGATGATCAATTA+AGG - chr4_1:83535258-83535277 Msa0578860:intron 30.0%
!!! TTTAGCTTTTCAATACCACA+TGG - chr4_1:83535310-83535329 Msa0578860:intron 30.0%
! TAAAACTCATTTGTTGCAGA+TGG - chr4_1:83535625-83535644 Msa0578860:intron 30.0%
! GATGGTAAAGAATTTTTCTC+CGG - chr4_1:83535643-83535662 Msa0578860:intron 30.0%
AATTGTAGAACATACTGAAC+TGG - chr4_1:83535874-83535893 Msa0578860:intron 30.0%
! TCAGGTATTATGATCTGTTT+TGG - chr4_1:83535910-83535929 Msa0578860:intron 30.0%
! ATTTAATGGTGCTTTTGCTA+AGG - chr4_1:83535943-83535962 Msa0578860:intron 30.0%
!! AAACAACTCTAGGATTAGTT+AGG - chr4_1:83536011-83536030 Msa0578860:intron 30.0%
!!! GGTGTCCTTTTTTTTTGATT+GGG + chr4_1:83536289-83536308 None:intergenic 30.0%
!!! AGGTGTCCTTTTTTTTTGAT+TGG + chr4_1:83536290-83536309 None:intergenic 30.0%
!!! TTTAGCTTTTTGGTAGTAGA+TGG - chr4_1:83536326-83536345 Msa0578860:intron 30.0%
TTTACTGTTAATTGTGGCAT+TGG - chr4_1:83536550-83536569 Msa0578860:intron 30.0%
!! ATTTATGCAGATTTTGACGA+CGG - chr4_1:83536649-83536668 Msa0578860:intron 30.0%
GAACAGAAGAAAAGAAACAT+GGG - chr4_1:83536671-83536690 Msa0578860:intron 30.0%
TTTGTAATCTGCATCTGTTT+GGG - chr4_1:83536905-83536924 Msa0578860:intron 30.0%
! AATATCGACTGACATTGATA+CGG - chr4_1:83537096-83537115 Msa0578860:intron 30.0%
GACCAAAAACAAGAAGAATA+AGG - chr4_1:83537333-83537352 Msa0578860:CDS 30.0%
!!! CTCCTTATTCTTCTTGTTTT+TGG + chr4_1:83537338-83537357 None:intergenic 30.0%
ACAATGTGAAGAGGAATTAA+AGG - chr4_1:83537414-83537433 Msa0578860:CDS 30.0%
AATTAAAGGAGTCAGAAGAA+AGG - chr4_1:83537428-83537447 Msa0578860:CDS 30.0%
AAATACACTTGGAAGTAGTT+TGG - chr4_1:83537868-83537887 Msa0578860:CDS 30.0%
! GAGAATACCTCAAAGGTTTT+CGG + chr4_1:83533993-83534012 None:intergenic 35.0%
TAGATAGAGAGAAAGAGAGA+GGG + chr4_1:83534262-83534281 None:intergenic 35.0%
!! TTTTGAGTCTTCATCTCAAG+AGG - chr4_1:83534466-83534485 Msa0578860:CDS 35.0%
GAGATTGTGTGTAATGAGAA+TGG - chr4_1:83534504-83534523 Msa0578860:CDS 35.0%
GGATGAATTTGGTTAGTGTT+GGG - chr4_1:83534640-83534659 Msa0578860:CDS 35.0%
GAGAGTGATCATCATTCAAT+TGG - chr4_1:83534690-83534709 Msa0578860:CDS 35.0%
!!! GTTCAGGTATTTTGCTGTTT+TGG - chr4_1:83534735-83534754 Msa0578860:CDS 35.0%
! ATGGCATTTGATGTTTGCTA+AGG - chr4_1:83534764-83534783 Msa0578860:CDS 35.0%
! ATTAAAGGGGCACAAAATGT+GGG + chr4_1:83535527-83535546 None:intergenic 35.0%
ATCACAGACTGGTGATTAAA+GGG + chr4_1:83535541-83535560 None:intergenic 35.0%
! TTGTGTTTGTTAGATAGTGC+TGG - chr4_1:83535764-83535783 Msa0578860:intron 35.0%
! TGTGTTTGTTAGATAGTGCT+GGG - chr4_1:83535765-83535784 Msa0578860:intron 35.0%
ACACAAATACAACCTGAAGA+GGG - chr4_1:83535851-83535870 Msa0578860:intron 35.0%
TATGAAGGACAAACAACTCT+AGG - chr4_1:83536001-83536020 Msa0578860:intron 35.0%
GTGTCATATGAATACTGCAA+TGG + chr4_1:83536073-83536092 None:intergenic 35.0%
TGAAGCAATGATGATCAATG+AGG - chr4_1:83536229-83536248 Msa0578860:CDS 35.0%
GAAGCAATGATGATCAATGA+GGG - chr4_1:83536230-83536249 Msa0578860:CDS 35.0%
AAGCAATGATGATCAATGAG+GGG - chr4_1:83536231-83536250 Msa0578860:CDS 35.0%
AATGCAGAGCTCAAAAACAT+AGG + chr4_1:83536523-83536542 None:intergenic 35.0%
GGAACAGAAGAAAAGAAACA+TGG - chr4_1:83536670-83536689 Msa0578860:intron 35.0%
AAACTTGTGATTAAAGGGAC+AGG + chr4_1:83536888-83536907 None:intergenic 35.0%
GTTTGTAATCTGCATCTGTT+TGG - chr4_1:83536904-83536923 Msa0578860:intron 35.0%
! TTCATTTGTTGCAGATGGTA+AGG - chr4_1:83536984-83537003 Msa0578860:intron 35.0%
ATGTCAGTCGATATTTGATG+TGG + chr4_1:83537091-83537110 None:intergenic 35.0%
! ATATCGACTGACATTGATAC+GGG - chr4_1:83537097-83537116 Msa0578860:intron 35.0%
AAGAAGAATAAGGAGCAGAA+TGG - chr4_1:83537343-83537362 Msa0578860:CDS 35.0%
GTATCTTGATTTACCTTACG+AGG + chr4_1:83537391-83537410 None:intergenic 35.0%
AGATACTGAACAATGTGAAG+AGG - chr4_1:83537405-83537424 Msa0578860:CDS 35.0%
GGAAAGAAGAAGAAAAGTCA+AGG - chr4_1:83537449-83537468 Msa0578860:CDS 35.0%
TTAGATCAAGCTAAGTTGTG+TGG - chr4_1:83537508-83537527 Msa0578860:CDS 35.0%
AGTCATACATTATACCTGTG+CGG - chr4_1:83537903-83537922 Msa0578860:exon 35.0%
CCATGTTGAGAATACCTCAA+AGG + chr4_1:83534000-83534019 None:intergenic 40.0%
!! CCTTTGAGGTATTCTCAACA+TGG - chr4_1:83533997-83534016 Msa0578860:three_prime_UTR 40.0%
! TTGAGGTATTCTCAACATGG+CGG - chr4_1:83534000-83534019 Msa0578860:three_prime_UTR 40.0%
AGAAGGGATTGTTCTTCATC+AGG + chr4_1:83534037-83534056 None:intergenic 40.0%
! GTTGTTGTTGATTGCGGAAT+CGG + chr4_1:83534068-83534087 None:intergenic 40.0%
TTGAATGAAGGAAGAGCGAT+CGG + chr4_1:83534170-83534189 None:intergenic 40.0%
TTGAAGGCGAGATTGAATGA+AGG + chr4_1:83534182-83534201 None:intergenic 40.0%
AGATAGAGAGAAAGAGAGAG+GGG + chr4_1:83534261-83534280 None:intergenic 40.0%
GTAGATAGAGAGAAAGAGAG+AGG + chr4_1:83534263-83534282 None:intergenic 40.0%
GTGTGTGCAGATGATAAACA+AGG - chr4_1:83534344-83534363 Msa0578860:CDS 40.0%
GAAAGACAAAATAGGCTCCA+CGG - chr4_1:83534380-83534399 Msa0578860:CDS 40.0%
GTTTGTGAAGAGAGAATACG+AGG - chr4_1:83534419-83534438 Msa0578860:CDS 40.0%
AGAATACGAGGATTTACCGT+GGG - chr4_1:83534431-83534450 Msa0578860:CDS 40.0%
TCAAGAGGTTGTGTGAAACT+GGG - chr4_1:83534481-83534500 Msa0578860:CDS 40.0%
TTGTGTGTAATGAGAATGGG+AGG - chr4_1:83534508-83534527 Msa0578860:CDS 40.0%
!! GGAGGTATGTTTTTCCTACT+GGG - chr4_1:83534526-83534545 Msa0578860:CDS 40.0%
! GAGGTATGTTTTTCCTACTG+GGG - chr4_1:83534527-83534546 Msa0578860:CDS 40.0%
! AGGTATGTTTTTCCTACTGG+GGG - chr4_1:83534528-83534547 Msa0578860:CDS 40.0%
! GAGAAAGAAAAGCGTAAGTG+TGG - chr4_1:83534558-83534577 Msa0578860:CDS 40.0%
! AAGAAAAGCGTAAGTGTGGT+AGG - chr4_1:83534562-83534581 Msa0578860:CDS 40.0%
TGTAGAGAGAGGGATGAATT+TGG - chr4_1:83534629-83534648 Msa0578860:CDS 40.0%
GGGATGAATTTGGTTAGTGT+TGG - chr4_1:83534639-83534658 Msa0578860:CDS 40.0%
TGAAGAACAGACACAAGTTC+AGG - chr4_1:83534719-83534738 Msa0578860:CDS 40.0%
GAATATCTCTAGGTCGGATT+AGG - chr4_1:83534834-83534853 Msa0578860:CDS 40.0%
AACACAACACGTGTCGAATA+TGG + chr4_1:83534871-83534890 None:intergenic 40.0%
ATATTCTAGTGGTAGCCTAG+CGG + chr4_1:83534983-83535002 None:intergenic 40.0%
! TTTGGGCCCCAAAAATTTTG+AGG - chr4_1:83535053-83535072 Msa0578860:intron 40.0%
! ACAGGGCCTCAAAATTTTTG+GGG + chr4_1:83535062-83535081 None:intergenic 40.0%
! CACAGGGCCTCAAAATTTTT+GGG + chr4_1:83535063-83535082 None:intergenic 40.0%
TTCACTGTCAATCATCCATG+TGG + chr4_1:83535328-83535347 None:intergenic 40.0%
! TTAAAGGGGCACAAAATGTG+GGG + chr4_1:83535526-83535545 None:intergenic 40.0%
! GATTAAAGGGGCACAAAATG+TGG + chr4_1:83535528-83535547 None:intergenic 40.0%
TCACAGACTGGTGATTAAAG+GGG + chr4_1:83535540-83535559 None:intergenic 40.0%
GATCACAGACTGGTGATTAA+AGG + chr4_1:83535542-83535561 None:intergenic 40.0%
! AAGAATTTTTCTCCGGCTGA+TGG - chr4_1:83535650-83535669 Msa0578860:intron 40.0%
AGTGAGAGTGATCGTTCAAT+TGG - chr4_1:83535812-83535831 Msa0578860:intron 40.0%
!! TCGTTCAATTGGAAGTGTTG+AGG - chr4_1:83535823-83535842 Msa0578860:intron 40.0%
GACACAAATACAACCTGAAG+AGG - chr4_1:83535850-83535869 Msa0578860:intron 40.0%
TGTTCTACAATTCCCTCTTC+AGG + chr4_1:83535866-83535885 None:intergenic 40.0%
ACTGGAAGAGACACAAATTC+AGG - chr4_1:83535892-83535911 Msa0578860:intron 40.0%
! GTGTCTAAAGTGCGTCAAAA+TGG + chr4_1:83536165-83536184 None:intergenic 40.0%
CAACACATCTTTAACTCCAC+AGG + chr4_1:83536211-83536230 None:intergenic 40.0%
!! GCTTTTTGGTAGTAGATGGA+TGG - chr4_1:83536330-83536349 Msa0578860:intron 40.0%
TACATGTCTCCGTATCTTGT+TGG - chr4_1:83536799-83536818 Msa0578860:intron 40.0%
ACATGTCTCCGTATCTTGTT+GGG - chr4_1:83536800-83536819 Msa0578860:intron 40.0%
ATGAAAAAAGGACTCCGACA+CGG + chr4_1:83536829-83536848 None:intergenic 40.0%
GGAGCGAAATTTATGCAGAA+AGG - chr4_1:83537005-83537024 Msa0578860:intron 40.0%
CCTGTAGATATTATGCACTC+TGG + chr4_1:83537034-83537053 None:intergenic 40.0%
CCAGAGTGCATAATATCTAC+AGG - chr4_1:83537031-83537050 Msa0578860:intron 40.0%
TGCATAATATCTACAGGTCC+AGG - chr4_1:83537037-83537056 Msa0578860:intron 40.0%
! GGTGATGATGATTCTATTCC+TGG + chr4_1:83537058-83537077 None:intergenic 40.0%
AGAATCATCATCACCAACAC+AGG - chr4_1:83537063-83537082 Msa0578860:intron 40.0%
TTTCCTTCATTGTAGTCCTG+AGG + chr4_1:83537169-83537188 None:intergenic 40.0%
ATGCAACCAAAGAGAAAGAG+AGG - chr4_1:83537244-83537263 Msa0578860:CDS 40.0%
AACCAAAGAGAAAGAGAGGA+AGG - chr4_1:83537248-83537267 Msa0578860:CDS 40.0%
GAATCAGATTCTGACTTACG+AGG + chr4_1:83537274-83537293 None:intergenic 40.0%
AAAGATCAAGCTAAGTTGCG+TGG - chr4_1:83537553-83537572 Msa0578860:CDS 40.0%
! TTAGCTTGATCTTCAGAAGC+TGG + chr4_1:83537649-83537668 None:intergenic 40.0%
TGGTATCATATCACACACCT+TGG + chr4_1:83537725-83537744 None:intergenic 40.0%
GTGATATGATACCATAGCAG+AGG - chr4_1:83537731-83537750 Msa0578860:CDS 40.0%
! CTCAAAGGTTTTCGGTCTCA+CGG + chr4_1:83533985-83534004 None:intergenic 45.0%
GGAATCGGTGTGAAGAAGAA+GGG + chr4_1:83534053-83534072 None:intergenic 45.0%
! GGCTGAGTTGTTGTTGATTG+CGG + chr4_1:83534074-83534093 None:intergenic 45.0%
! TGAGTCTCTGAGTTGAGACA+TGG + chr4_1:83534095-83534114 None:intergenic 45.0%
GGTTAGAGAAGGGTTGAGTT+GGG + chr4_1:83534134-83534153 None:intergenic 45.0%
GATAGAGAGAAAGAGAGAGG+GGG + chr4_1:83534260-83534279 None:intergenic 45.0%
GAGAATACGAGGATTTACCG+TGG - chr4_1:83534430-83534449 Msa0578860:CDS 45.0%
AAAATCTTCCCATGTGCCCA+CGG + chr4_1:83534450-83534469 None:intergenic 45.0%
CTCAAGAGGTTGTGTGAAAC+TGG - chr4_1:83534480-83534499 Msa0578860:CDS 45.0%
CAAGAGGTTGTGTGAAACTG+GGG - chr4_1:83534482-83534501 Msa0578860:CDS 45.0%
!! GGGAGGTATGTTTTTCCTAC+TGG - chr4_1:83534525-83534544 Msa0578860:CDS 45.0%
GAAGAGAGGGGGTAATAGAA+GGG - chr4_1:83534590-83534609 Msa0578860:CDS 45.0%
AAGAGAGGGGGTAATAGAAG+GGG - chr4_1:83534591-83534610 Msa0578860:CDS 45.0%
GGTAATAGAAGGGGTAATCG+TGG - chr4_1:83534600-83534619 Msa0578860:CDS 45.0%
AATAGAAGGGGTAATCGTGG+AGG - chr4_1:83534603-83534622 Msa0578860:CDS 45.0%
TTAAGCGCGCGAATATCTCT+AGG - chr4_1:83534824-83534843 Msa0578860:CDS 45.0%
! ATCTCTAGGTCGGATTAGGT+AGG - chr4_1:83534838-83534857 Msa0578860:CDS 45.0%
! GCACAGGGCCTCAAAATTTT+TGG + chr4_1:83535064-83535083 None:intergenic 45.0%
ATCATATGAATGGTCAGGGC+CGG + chr4_1:83535110-83535129 None:intergenic 45.0%
ATGTCTCCGATGAGTGTCTA+AGG + chr4_1:83535198-83535217 None:intergenic 45.0%
GAAGAGAAGGAAGGTGGTAA+GGG - chr4_1:83535677-83535696 Msa0578860:intron 45.0%
ACACTGATGCGTGTCGAATA+CGG + chr4_1:83536044-83536063 None:intergenic 45.0%
AGACATCTTAGACACACCTG+TGG - chr4_1:83536192-83536211 Msa0578860:CDS 45.0%
GGTAGTAGATGGATGGTTGA+AGG - chr4_1:83536337-83536356 Msa0578860:intron 45.0%
GATTAAAGGGACAGGAATGC+AGG + chr4_1:83536880-83536899 None:intergenic 45.0%
ATTTGATGTGGCACCTGTGT+TGG + chr4_1:83537079-83537098 None:intergenic 45.0%
! ACTGCACTAGTTTGTGCGAA+TGG - chr4_1:83537127-83537146 Msa0578860:intron 45.0%
AACCCAATGTCTGACTCTGA+TGG - chr4_1:83537211-83537230 Msa0578860:CDS 45.0%
GACCATCAGAGTCAGACATT+GGG + chr4_1:83537216-83537235 None:intergenic 45.0%
AGACCATCAGAGTCAGACAT+TGG + chr4_1:83537217-83537236 None:intergenic 45.0%
TAAGCAGCAATGGCTTCTCT+TGG + chr4_1:83537303-83537322 None:intergenic 45.0%
! AGAAGCCATTGCTGCTTAAG+CGG - chr4_1:83537305-83537324 Msa0578860:CDS 45.0%
GAGCAGAATGGTCAAACTAG+AGG - chr4_1:83537355-83537374 Msa0578860:CDS 45.0%
AATGGTCAAACTAGAGGTCG+AGG - chr4_1:83537361-83537380 Msa0578860:CDS 45.0%
ATGGTCAAACTAGAGGTCGA+GGG - chr4_1:83537362-83537381 Msa0578860:CDS 45.0%
GATCAAGCTAAGTTGTGTGG+TGG - chr4_1:83537511-83537530 Msa0578860:CDS 45.0%
GCTATGGCATCACACACTTT+AGG + chr4_1:83537619-83537638 None:intergenic 45.0%
GAAGATCAAGCTAAGTTGCG+TGG - chr4_1:83537655-83537674 Msa0578860:intron 45.0%
! ATATCACACACCTTGGCCTT+AGG + chr4_1:83537718-83537737 None:intergenic 45.0%
CCTTGAACTTCACATGGTTG+TGG + chr4_1:83537772-83537791 None:intergenic 45.0%
CCACAACCATGTGAAGTTCA+AGG - chr4_1:83537769-83537788 Msa0578860:CDS 45.0%
CCTCTACCTTGAACTTCACA+TGG + chr4_1:83537778-83537797 None:intergenic 45.0%
CCATGTGAAGTTCAAGGTAG+AGG - chr4_1:83537775-83537794 Msa0578860:CDS 45.0%
TGTGAAGTTCAAGGTAGAGG+TGG - chr4_1:83537778-83537797 Msa0578860:CDS 45.0%
CGTGAGACCGAAAACCTTTG+AGG - chr4_1:83533983-83534002 Msa0578860:three_prime_UTR 50.0%
CGGAATCGGTGTGAAGAAGA+AGG + chr4_1:83534054-83534073 None:intergenic 50.0%
GGGTTAGAGAAGGGTTGAGT+TGG + chr4_1:83534135-83534154 None:intergenic 50.0%
GAAGGAAGAGCGATCGGTTA+GGG + chr4_1:83534164-83534183 None:intergenic 50.0%
TGAAGGAAGAGCGATCGGTT+AGG + chr4_1:83534165-83534184 None:intergenic 50.0%
TGCATACCAAGGCGTAAGGA+GGG + chr4_1:83534237-83534256 None:intergenic 50.0%
AGACAAAATAGGCTCCACGG+AGG - chr4_1:83534383-83534402 Msa0578860:CDS 50.0%
AGGATTTACCGTGGGCACAT+GGG - chr4_1:83534439-83534458 Msa0578860:CDS 50.0%
! TGTTTTTCCTACTGGGGGTG+TGG - chr4_1:83534533-83534552 Msa0578860:CDS 50.0%
AGCGTAAGTGTGGTAGGAAG+AGG - chr4_1:83534568-83534587 Msa0578860:CDS 50.0%
TGTGGTAGGAAGAGGAAGAG+AGG - chr4_1:83534576-83534595 Msa0578860:CDS 50.0%
GTGGTAGGAAGAGGAAGAGA+GGG - chr4_1:83534577-83534596 Msa0578860:CDS 50.0%
TGGTAGGAAGAGGAAGAGAG+GGG - chr4_1:83534578-83534597 Msa0578860:CDS 50.0%
GGAAGAGAGGGGGTAATAGA+AGG - chr4_1:83534589-83534608 Msa0578860:CDS 50.0%
GTGGAGGAGATGTAGAGAGA+GGG - chr4_1:83534619-83534638 Msa0578860:CDS 50.0%
! TAGCGGACAAGTCTGTTCGT+CGG + chr4_1:83534966-83534985 None:intergenic 50.0%
!!! AATTTTGAGGCCCTGTGCCA+TGG - chr4_1:83535066-83535085 Msa0578860:intron 50.0%
!!! ATTTTGAGGCCCTGTGCCAT+GGG - chr4_1:83535067-83535086 Msa0578860:intron 50.0%
GACGCACCTTAGACACTCAT+CGG - chr4_1:83535189-83535208 Msa0578860:intron 50.0%
AACAGACGCAGATCACAGAC+TGG + chr4_1:83535552-83535571 None:intergenic 50.0%
GTCTGTGATCTGCGTCTGTT+AGG - chr4_1:83535552-83535571 Msa0578860:intron 50.0%
!! TTTTTCTCCGGCTGATGGTG+AGG - chr4_1:83535655-83535674 Msa0578860:intron 50.0%
TTCTCTTCCTCACCATCAGC+CGG + chr4_1:83535665-83535684 None:intergenic 50.0%
GATGGTGAGGAAGAGAAGGA+AGG - chr4_1:83535668-83535687 Msa0578860:intron 50.0%
GGAAGAGAAGGAAGGTGGTA+AGG - chr4_1:83535676-83535695 Msa0578860:intron 50.0%
AGGAAGGTGGTAAGGGTAGT+AGG - chr4_1:83535684-83535703 Msa0578860:intron 50.0%
GTGGTAAGGGTAGTAGGAAG+AGG - chr4_1:83535690-83535709 Msa0578860:intron 50.0%
AGGGTAGTAGGAAGAGGAAG+AGG - chr4_1:83535696-83535715 Msa0578860:intron 50.0%
GGGTAGTAGGAAGAGGAAGA+GGG - chr4_1:83535697-83535716 Msa0578860:intron 50.0%
GGTAGTAGGAAGAGGAAGAG+GGG - chr4_1:83535698-83535717 Msa0578860:intron 50.0%
ACAAGGAGTAGTCGTGGAGA+CGG - chr4_1:83535725-83535744 Msa0578860:intron 50.0%
CACGGACACCCAACAAGATA+CGG + chr4_1:83536811-83536830 None:intergenic 50.0%
ATCTTGTTGGGTGTCCGTGT+CGG - chr4_1:83536812-83536831 Msa0578860:intron 50.0%
! ATATGATGACGAGCGTCCTC+AGG - chr4_1:83537150-83537169 Msa0578860:intron 50.0%
CGTCCTCAGGACTACAATGA+AGG - chr4_1:83537163-83537182 Msa0578860:intron 50.0%
! GTCTGACTCTGATGGTCTTG+AGG - chr4_1:83537219-83537238 Msa0578860:CDS 50.0%
GGCCTTCCTCTCTTTCTCTT+TGG + chr4_1:83537253-83537272 None:intergenic 50.0%
! GAAGCCATTGCTGCTTAAGC+GGG - chr4_1:83537306-83537325 Msa0578860:CDS 50.0%
! AAGCCATTGCTGCTTAAGCG+GGG - chr4_1:83537307-83537326 Msa0578860:CDS 50.0%
CAAGCTAAGTTGCGTGGTCA+AGG - chr4_1:83537559-83537578 Msa0578860:intron 50.0%
AGTGTGTGATGCCATAGCAG+AGG - chr4_1:83537621-83537640 Msa0578860:intron 50.0%
AGAATCAAGAGCAACCGCAC+AGG + chr4_1:83537920-83537939 None:intergenic 50.0%
GGGTGGAAGGGGTTAGAGAA+GGG + chr4_1:83534144-83534163 None:intergenic 55.0%
AGGGTGGAAGGGGTTAGAGA+AGG + chr4_1:83534145-83534164 None:intergenic 55.0%
AGCGATCGGTTAGGGTGGAA+GGG + chr4_1:83534156-83534175 None:intergenic 55.0%
AAGGCGTAAGGAGGGTGAGT+GGG + chr4_1:83534229-83534248 None:intergenic 55.0%
GTGCATACCAAGGCGTAAGG+AGG + chr4_1:83534238-83534257 None:intergenic 55.0%
CAAAATAGGCTCCACGGAGG+AGG - chr4_1:83534386-83534405 Msa0578860:CDS 55.0%
GAGGATTTACCGTGGGCACA+TGG - chr4_1:83534438-83534457 Msa0578860:CDS 55.0%
TTCTCTTCCACACCCCCAGT+AGG + chr4_1:83534543-83534562 None:intergenic 55.0%
GGTAGGAAGAGGAAGAGAGG+GGG - chr4_1:83534579-83534598 Msa0578860:CDS 55.0%
CGTGGAGGAGATGTAGAGAG+AGG - chr4_1:83534618-83534637 Msa0578860:CDS 55.0%
GCGCGCGAATATCTCTAGGT+CGG - chr4_1:83534828-83534847 Msa0578860:CDS 55.0%
GTCTGTTCGTCGGTAATGCG+TGG + chr4_1:83534956-83534975 None:intergenic 55.0%
GACGAACAGACTTGTCCGCT+AGG - chr4_1:83534965-83534984 Msa0578860:intron 55.0%
! GGCTGATGGTGAGGAAGAGA+AGG - chr4_1:83535664-83535683 Msa0578860:intron 55.0%
GGTGAGGAAGAGAAGGAAGG+TGG - chr4_1:83535671-83535690 Msa0578860:intron 55.0%
AGAGGAAGAGGGGCAACACA+AGG - chr4_1:83535708-83535727 Msa0578860:intron 55.0%
GGCAACACAAGGAGTAGTCG+TGG - chr4_1:83535719-83535738 Msa0578860:intron 55.0%
GACTGAAGAGCCTTCGACAC+AGG - chr4_1:83535787-83535806 Msa0578860:intron 55.0%
CTCTCACTGACCTGTGTCGA+AGG + chr4_1:83535800-83535819 None:intergenic 55.0%
GTCAAACTAGAGGTCGAGGG+AGG - chr4_1:83537365-83537384 Msa0578860:CDS 55.0%
AAGTTGCGTGGTCAAGGTCG+TGG - chr4_1:83537565-83537584 Msa0578860:intron 55.0%
AGAAGCTGGTGCCTCTGCTA+TGG + chr4_1:83537635-83537654 None:intergenic 55.0%
CAAGCTAAGTTGCGTGGCTG+TGG - chr4_1:83537661-83537680 Msa0578860:intron 55.0%
!! TCACACACCTTGGCCTTAGG+AGG + chr4_1:83537715-83537734 None:intergenic 55.0%
! AGCAGCTGGTTCCTCTGCTA+TGG + chr4_1:83537745-83537764 None:intergenic 55.0%
ATGGTTGTGGCTTCAGCAGC+TGG + chr4_1:83537759-83537778 None:intergenic 55.0%
GCGATCGGTTAGGGTGGAAG+GGG + chr4_1:83534155-83534174 None:intergenic 60.0%
GAGCGATCGGTTAGGGTGGA+AGG + chr4_1:83534157-83534176 None:intergenic 60.0%
GGAAGAGCGATCGGTTAGGG+TGG + chr4_1:83534161-83534180 None:intergenic 60.0%
AGGCGTAAGGAGGGTGAGTG+GGG + chr4_1:83534228-83534247 None:intergenic 60.0%
CAAGGCGTAAGGAGGGTGAG+TGG + chr4_1:83534230-83534249 None:intergenic 60.0%
CACTCACCCTCCTTACGCCT+TGG - chr4_1:83534228-83534247 Msa0578860:CDS 60.0%
GGGGTGCATACCAAGGCGTA+AGG + chr4_1:83534241-83534260 None:intergenic 60.0%
! GAGAGAGGGGGTGCATACCA+AGG + chr4_1:83534248-83534267 None:intergenic 60.0%
CTCCACGGAGGAGGCGATTT+CGG - chr4_1:83534395-83534414 Msa0578860:CDS 60.0%
TGAATGGTCAGGGCCGGAGA+GGG + chr4_1:83535104-83535123 None:intergenic 60.0%
ATGAATGGTCAGGGCCGGAG+AGG + chr4_1:83535105-83535124 None:intergenic 60.0%
AGTCGTGGAGACGGAGAGAG+TGG - chr4_1:83535734-83535753 Msa0578860:intron 60.0%
GTCGTGGAGACGGAGAGAGT+GGG - chr4_1:83535735-83535754 Msa0578860:intron 60.0%
GCTCCCCGCTTAAGCAGCAA+TGG + chr4_1:83537313-83537332 None:intergenic 60.0%
GAGGTCGAGGTCGCAGTCAA+GGG - chr4_1:83537590-83537609 Msa0578860:intron 60.0%
AAGTTGCGTGGCTGTGGTCG+AGG - chr4_1:83537667-83537686 Msa0578860:intron 60.0%
GGCGTAAGGAGGGTGAGTGG+GGG + chr4_1:83534227-83534246 None:intergenic 65.0%
CTCCGAAATCGCCTCCTCCG+TGG + chr4_1:83534400-83534419 None:intergenic 65.0%
GCAAGCAGGCCCATGGCACA+GGG + chr4_1:83535079-83535098 None:intergenic 65.0%
TGCAAGCAGGCCCATGGCAC+AGG + chr4_1:83535080-83535099 None:intergenic 65.0%
GAATGGTCAGGGCCGGAGAG+GGG + chr4_1:83535103-83535122 None:intergenic 65.0%
AGGTCGAGGGAGGCCTCGTA+AGG - chr4_1:83537375-83537394 Msa0578860:CDS 65.0%
CGTGGTCAAGGTCGTGGTCG+AGG - chr4_1:83537571-83537590 Msa0578860:intron 65.0%
CAAGGTCGTGGTCGAGGTCG+AGG - chr4_1:83537577-83537596 Msa0578860:intron 65.0%
CGAGGTCGAGGTCGCAGTCA+AGG - chr4_1:83537589-83537608 Msa0578860:intron 65.0%
GTCGAGGTCGCAGTCAAGGG+AGG - chr4_1:83537593-83537612 Msa0578860:intron 65.0%
TGGTCGAGGGAGGCCTCCTA+AGG - chr4_1:83537699-83537718 Msa0578860:CDS 65.0%
AGGGAGGCCTCCTAAGGCCA+AGG - chr4_1:83537705-83537724 Msa0578860:CDS 65.0%
! GAGGGGTGCAAGCAGGCCCA+TGG + chr4_1:83535086-83535105 None:intergenic 70.0%
GGCCTGCTTGCACCCCTCTC+CGG - chr4_1:83535088-83535107 Msa0578860:intron 70.0%
CGTGGCTGTGGTCGAGGTCG+CGG - chr4_1:83537673-83537692 Msa0578860:intron 70.0%
TGTGGTCGAGGTCGCGGTCG+TGG - chr4_1:83537679-83537698 Msa0578860:intron 70.0%
GAGGTCGCGGTCGTGGTCGA+GGG - chr4_1:83537686-83537705 Msa0578860:CDS 70.0%
! GGCCGGAGAGGGGTGCAAGC+AGG + chr4_1:83535093-83535112 None:intergenic 75.0%
CGAGGTCGCGGTCGTGGTCG+AGG - chr4_1:83537685-83537704 Msa0578860:CDS 75.0%
GTCGCGGTCGTGGTCGAGGG+AGG - chr4_1:83537689-83537708 Msa0578860:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83533966 83537965 83533966 ID=Msa0578860;Name=Msa0578860
chr4_1 mRNA 83533966 83537965 83533966 ID=Msa0578860-mRNA-1;Parent=Msa0578860;Name=Msa0578860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=50|1|1|1|1|1|4|218|546
chr4_1 exon 83533966 83534933 83533966 ID=Msa0578860-mRNA-1:exon:30470;Parent=Msa0578860-mRNA-1
chr4_1 exon 83536018 83536287 83536018 ID=Msa0578860-mRNA-1:exon:30469;Parent=Msa0578860-mRNA-1
chr4_1 exon 83537191 83537577 83537191 ID=Msa0578860-mRNA-1:exon:30468;Parent=Msa0578860-mRNA-1
chr4_1 exon 83537682 83537965 83537682 ID=Msa0578860-mRNA-1:exon:30467;Parent=Msa0578860-mRNA-1
chr4_1 five_prime_UTR 83537916 83537965 83537916 ID=Msa0578860-mRNA-1:five_prime_utr;Parent=Msa0578860-mRNA-1
chr4_1 CDS 83537682 83537915 83537682 ID=Msa0578860-mRNA-1:cds;Parent=Msa0578860-mRNA-1
chr4_1 CDS 83537191 83537577 83537191 ID=Msa0578860-mRNA-1:cds;Parent=Msa0578860-mRNA-1
chr4_1 CDS 83536018 83536287 83536018 ID=Msa0578860-mRNA-1:cds;Parent=Msa0578860-mRNA-1
chr4_1 CDS 83534184 83534933 83534184 ID=Msa0578860-mRNA-1:cds;Parent=Msa0578860-mRNA-1
chr4_1 three_prime_UTR 83533966 83534183 83533966 ID=Msa0578860-mRNA-1:three_prime_utr;Parent=Msa0578860-mRNA-1
Gene Sequence

>Msa0578860

ATGGCGGAAAATAACAAACCTGATGAAGAACAATCCCTTCTTCTTCACACCGATTCCGCAATCAACAACAACTCAGCCATGTCTCAACTCAGAGACTCACTTCTCTCTCAACTCACCCAACTCAACCCTTCTCTAACCCCTTCCACCCTAACCGATCGCTCTTCCTTCATTCAATCTCGCCTTCAACAGCTTTTTCATTCTTTTCGCACCCCCACTCACCCTCCTTACGCCTTGATGATAAACAAGGCAATAACGGAATTGAAAGACAAAATAGGCTCCACGGAGGAGGCGATTTCGGAGTTTGTGAAGAGAGAATACGAGGATTTACCGTGGGCACATGGGAAGATTTTGAGTCTTCATCTCAAGAGGTTGTGTGAAACTGGGGAGATTGTGTGTAATGAGAATGGGAGGTATGTTTTTCCTACTGGGGGTGTGGAAGAGAAAGAAAAGCGTAAGTGTGGTAGGAAGAGGAAGAGAGGGGGTAATAGAAGGGGTAATCGTGGAGGAGATGTAGAGAGAGGGATGAATTTGGTTAGTGTTGGGAGTGACGAGACTTCGACGCGAGTTTGTGAGAGTGATCATCATTCAATTGGAAATGTTGAAGAACAGACACAAGTTCAGATGGTAAAGAATTTTTCTCCGGCTGATGGTGAGGAAGAGAAGGAAGGTGGTAAGGGTAGTAGGAAGAGGAAGAGGGGCAACACAAGGAGTAGTCGTGGAGACGGAGAGAGTGGGAATCAATTGTGTTTGTTAGATAGTGCTGGGACTGAAGAGCCTTCGACACAGGTCAGTGAGAGTGATCGTTCAATTGGAAGTGTTGAGGAACAGACACAAATACAACCTGAAGAGGGAATTGTAGAACATACTGAACTGGAAGAGACACAAATTCAGATGGTAAGGAGCGAAATTTATGCAGAAAGGTCACCAGAGTGCATAATATCTACAGGTCCAGGAATAGAATCATCATCACCAACACAGGTGCCACATCAAATATCGACTGACATTGATACGGGTATAACAACTGCACTAGTTTGTGCGAATGGATATGATGACGAGCGTCCTCAGGACTACAATGAAGGAAATACTAATGGAAACTCTGATGAGAACCCAATGTCTGACTCTGATGGTCTTGAGGAGATGCAACCAAAGAGAAAGAGAGGAAGGCCTCGTAAGTCAGAATCTGATTCAAACTGCCAAGAGAAGCCATTGCTGCTTAAGCGGGGAGCGACCAAAAACAAGAAGAATAAGGAGCAGAATGGTCAAACTAGAGGTCGAGGGAGGCCTCGTAAGGTAAATCAAGATACTGAACAATGTGAAGAGGAATTAAAGGAGTCAGAAGAAAGGAAAGAAGAAGAAAAGTCAAGGAAAAAAGAAGAGAAGTTAAAGAAAAAAGAAGAGAAGTTAGATCAAGCTAAGTTGTGTGGTGGTGAAAAGAAATTAAAGATAAAAGATCAAGCTAAGTTGCGTGGTCAAGGTCGTGGTCGAGGTCGAGGTCGCAGTCAAGGGAGGCCTAAAGTGTGTGATGCCATAGCAGAGGCACCAGCTTCTGAAGATCAAGCTAAGTTGCGTGGCTGTGGTCGAGGTCGCGGTCGTGGTCGAGGGAGGCCTCCTAAGGCCAAGGTGTGTGATATGATACCATAG

Protein sequence

>Msa0578860

MAENNKPDEEQSLLLHTDSAINNNSAMSQLRDSLLSQLTQLNPSLTPSTLTDRSSFIQSRLQQLFHSFRTPTHPPYALMINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCETGEIVCNENGRYVFPTGGVEEKEKRKCGRKRKRGGNRRGNRGGDVERGMNLVSVGSDETSTRVCESDHHSIGNVEEQTQVQMVKNFSPADGEEEKEGGKGSRKRKRGNTRSSRGDGESGNQLCLLDSAGTEEPSTQVSESDRSIGSVEEQTQIQPEEGIVEHTELEETQIQMVRSEIYAERSPECIISTGPGIESSSPTQVPHQISTDIDTGITTALVCANGYDDERPQDYNEGNTNGNSDENPMSDSDGLEEMQPKRKRGRPRKSESDSNCQEKPLLLKRGATKNKKNKEQNGQTRGRGRPRKVNQDTEQCEEELKESEERKEEEKSRKKEEKLKKKEEKLDQAKLCGGEKKLKIKDQAKLRGQGRGRGRGRSQGRPKVCDAIAEAPASEDQAKLRGCGRGRGRGRGRPPKAKVCDMIP*