AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044260 MtrunA17_Chr1g0210871 91.176 34 3 0 7 40 456 489 1.80e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 205 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGAACATGCTTAA+AGG 0.183373 1_1:+75763533 None:intergenic
CAATATTCACAGATTCATTT+TGG 0.183660 1_1:+75761070 None:intergenic
TATTGCGATGTTGACGAAAA+TGG 0.184170 1_1:-75762617 Msa0044260:three_prime_UTR
TATTGGTATATGGTACTTAA+TGG 0.201910 1_1:-75762284 Msa0044260:three_prime_UTR
TATTGGTATATGGTACTTAA+TGG 0.201910 1_1:-75769307 Msa0044260:five_prime_UTR
TCGGAAGCAGCATAAATTTC+AGG 0.217736 1_1:+75763708 None:intergenic
AATGAAATTAAATTACATTT+AGG 0.218634 1_1:-75763618 Msa0044260:three_prime_UTR
CATTTAGGAGTTGAAATAAA+TGG 0.220622 1_1:-75763603 Msa0044260:three_prime_UTR
TGTATTTAGATATTCCTTAA+TGG 0.224199 1_1:-75760877 Msa0044260:three_prime_UTR
CACCGATGTATAAATAAATA+AGG 0.239204 1_1:+75762757 None:intergenic
CTGTGAATATTGTTAGTTCT+TGG 0.239953 1_1:-75761059 Msa0044260:three_prime_UTR
ACAATAGTTAAATCTTAAAT+AGG 0.244234 1_1:-75760915 Msa0044260:three_prime_UTR
GGATGGATGGTTTCATCTTC+TGG 0.257804 1_1:-75762213 Msa0044260:three_prime_UTR
GGATGGATGGTTTCATCTTC+TGG 0.257804 1_1:-75769249 Msa0044260:five_prime_UTR
TTCAAAATCATTATGATTGC+AGG 0.266216 1_1:+75763500 None:intergenic
ATAAATAAATAAGGGGAAAA+AGG 0.282916 1_1:+75762766 None:intergenic
TTTGATCACACAAGATGATT+TGG 0.289503 1_1:+75761181 None:intergenic
GCATATAATGAAATTGTATA+TGG 0.291709 1_1:-75763399 Msa0044260:three_prime_UTR
CCATTCTTAAATAAAATAAT+TGG 0.292958 1_1:+75762921 None:intergenic
TTGAAACTAATAACAAATTC+TGG 0.295864 1_1:+75762425 None:intergenic
CTTATTATAATATTGGTATA+TGG 0.296291 1_1:-75762294 Msa0044260:three_prime_UTR
CTTATTATAATATTGGTATA+TGG 0.296291 1_1:-75769317 Msa0044260:five_prime_UTR
AATAACTAGCACTGTAAATA+AGG 0.297620 1_1:+75762636 None:intergenic
TCCACAGGATGCTGTTGATT+TGG 0.304882 1_1:-75763886 Msa0044260:three_prime_UTR
TGATAGACCATCAAACGTTC+TGG 0.312618 1_1:+75763930 None:intergenic
TTCTAGATTATTCGTTGTAA+TGG 0.313222 1_1:-75762680 Msa0044260:three_prime_UTR
ATCATCTTGTGTGATCAAAA+TGG 0.313574 1_1:-75761177 Msa0044260:three_prime_UTR
TGTATATGGAAAGTTGGATT+TGG 0.313935 1_1:-75763385 Msa0044260:three_prime_UTR
CCGTGTAATAATGGGGAATA+TGG 0.323010 1_1:-75762573 Msa0044260:three_prime_UTR
TGTGCAAAAGATGTTTCTTA+AGG 0.323221 1_1:-75763358 Msa0044260:three_prime_UTR
ATGATTCGGTTCACTCCATT+TGG 0.337845 1_1:-75762234 Msa0044260:three_prime_UTR
ATGATTCGGTTCACTCCATT+TGG 0.337845 1_1:-75769270 Msa0044260:five_prime_UTR
AAATGTAATTTAATTTCATT+AGG 0.344899 1_1:+75763621 None:intergenic
TGTTTGACAACCTTGTTTCT+TGG 0.346772 1_1:+75764053 None:intergenic
ATATGTACCATCTGCACTTC+AGG 0.348991 1_1:-75761596 Msa0044260:three_prime_UTR
ACCGATGTATAAATAAATAA+GGG 0.357930 1_1:+75762758 None:intergenic
GTGCAAAAGATGTTTCTTAA+GGG 0.359591 1_1:-75763357 Msa0044260:three_prime_UTR
CCTTTACACTTCAAACTTTG+CGG 0.363885 1_1:-75761117 Msa0044260:three_prime_UTR
TATCAGATGAATTTGAAATC+TGG 0.365305 1_1:-75763780 Msa0044260:three_prime_UTR
CTCCACCGCCTCTTCTAACT+AGG 0.367579 1_1:-75765076 Msa0044260:CDS
ATTGGTATATGGTACTTAAT+GGG 0.368612 1_1:-75769306 Msa0044260:five_prime_UTR
ATATGACTCTCTGATTTCAT+TGG 0.368978 1_1:+75764002 None:intergenic
ATTGGTATATGGTACTTAAT+GGG 0.371112 1_1:-75762283 Msa0044260:three_prime_UTR
CGAGGGGATGTTGAAGCTTC+AGG 0.375057 1_1:+75761687 None:intergenic
AGAATTTGTTATTAGTTTCA+AGG 0.376305 1_1:-75762423 Msa0044260:three_prime_UTR
GATGGTTTCATCTTCTGGTT+GGG 0.377466 1_1:-75762208 Msa0044260:three_prime_UTR
GATGGTTTCATCTTCTGGTT+GGG 0.377466 1_1:-75769244 Msa0044260:five_prime_UTR
CTTAAGGGAACTGGTAGTTT+TGG 0.384074 1_1:-75763342 Msa0044260:three_prime_UTR
TTGCTTCCATGTTTATCTAC+TGG 0.384316 1_1:+75764198 None:intergenic
TGTGAATATTGTTAGTTCTT+GGG 0.387596 1_1:-75761058 Msa0044260:three_prime_UTR
TGAAATTGTATATGGAAAGT+TGG 0.390031 1_1:-75763391 Msa0044260:three_prime_UTR
CGTTTGATGGTCTATCAAAA+TGG 0.393202 1_1:-75763924 Msa0044260:three_prime_UTR
ATTGCGATGTTGACGAAAAT+GGG 0.394816 1_1:-75762616 Msa0044260:three_prime_UTR
TCTAGATTATTCGTTGTAAT+GGG 0.399771 1_1:-75762679 Msa0044260:three_prime_UTR
CATAGTAGGTAACTCTCCTT+TGG 0.401981 1_1:+75763182 None:intergenic
TAATATTATAGAACATTTCA+AGG 0.407584 1_1:+75762820 None:intergenic
TTTGTGAGTGCCGTTCCTTT+TGG 0.409100 1_1:-75762125 Msa0044260:three_prime_UTR
TTTGTGAGTGCCGTTCCTTT+TGG 0.409100 1_1:-75769161 Msa0044260:five_prime_UTR
GGAGTAGGTGCATCCAAGTT+GGG 0.410633 1_1:-75763582 Msa0044260:three_prime_UTR
ACAACGGAAAGGCGTCTAAC+AGG 0.411555 1_1:-75764175 Msa0044260:exon
ATGAAATCAGAGAGTCATAT+TGG 0.412100 1_1:-75763999 Msa0044260:three_prime_UTR
GTTGAGCAAAATAAAAGTAT+AGG 0.412784 1_1:-75763429 Msa0044260:three_prime_UTR
GGATGGTTTCATCTTCTGGT+TGG 0.415807 1_1:-75762209 Msa0044260:three_prime_UTR
GGATGGTTTCATCTTCTGGT+TGG 0.415807 1_1:-75769245 Msa0044260:five_prime_UTR
AGCAGTAATAACATGGGAAA+TGG 0.415932 1_1:-75763468 Msa0044260:three_prime_UTR
AAGATGTTTCTTAAGGGAAC+TGG 0.416920 1_1:-75763351 Msa0044260:three_prime_UTR
TTCGTTGTAATGGGTAGAAA+AGG 0.427139 1_1:-75762670 Msa0044260:three_prime_UTR
ACCATGACATCAAGAATGTT+TGG 0.429215 1_1:+75764327 None:intergenic
GCCTTATGATCTCTGCAATC+AGG 0.430030 1_1:-75763679 Msa0044260:three_prime_UTR
GTTCTAGTTGATATATGATT+CGG 0.438673 1_1:-75769284 Msa0044260:five_prime_UTR
GATAGACCATCAAACGTTCT+GGG 0.444240 1_1:+75763931 None:intergenic
TAACTAGTTGATATATGATT+CGG 0.444395 1_1:-75762248 Msa0044260:three_prime_UTR
TCCTGATTGCAGAGATCATA+AGG 0.444505 1_1:+75763678 None:intergenic
TACCTACTATGATGAATTGT+GGG 0.444859 1_1:-75763170 Msa0044260:three_prime_UTR
TACATCGGTGCAGTCGCGAT+TGG 0.445376 1_1:-75763283 Msa0044260:three_prime_UTR
ATTTAATTTCATTAGGACCT+TGG 0.447429 1_1:+75763628 None:intergenic
ATTTATGCTGCTTCCGATGA+AGG 0.448045 1_1:-75763702 Msa0044260:three_prime_UTR
TAAAGGACCAGAGTTCTGTT+TGG 0.448794 1_1:-75764269 Msa0044260:CDS
AATATTGTTGAAGTTATCCT+AGG 0.451341 1_1:-75763010 Msa0044260:three_prime_UTR
TTAAGATTTAACTATTGTGC+TGG 0.452841 1_1:+75760920 None:intergenic
GTTTGCAACAACCTATTGCT+TGG 0.460581 1_1:-75763758 Msa0044260:three_prime_UTR
AGGATGCTGTTGATTTGGTT+AGG 0.460743 1_1:-75763881 Msa0044260:three_prime_UTR
GTTCACTCCATTTGGATGGA+TGG 0.462886 1_1:-75762226 Msa0044260:three_prime_UTR
GTTCACTCCATTTGGATGGA+TGG 0.462886 1_1:-75769262 Msa0044260:five_prime_UTR
TGAAGTGCAGATGGTACATA+TGG 0.467187 1_1:+75761598 None:intergenic
CCGCAAAGTTTGAAGTGTAA+AGG 0.468426 1_1:+75761117 None:intergenic
CGGAAGCCCAGAACGTTTGA+TGG 0.469515 1_1:-75763937 Msa0044260:three_prime_UTR
TAGAAATTCAACCTGGCAAA+AGG 0.470103 1_1:+75763075 None:intergenic
TGCAATCAGGACAGCAGAAA+AGG 0.471869 1_1:-75763666 Msa0044260:three_prime_UTR
GTCAAACATATGAGATTGAA+AGG 0.473888 1_1:-75764038 Msa0044260:three_prime_UTR
GTCTCATCAATCCAAGCAAT+AGG 0.480763 1_1:+75763747 None:intergenic
CTCTTGCGAGCTACATTACC+TGG 0.482989 1_1:-75761421 Msa0044260:three_prime_UTR
ATATTGGACGATCGTTGGTT+AGG 0.486121 1_1:-75763983 Msa0044260:three_prime_UTR
CCCCTTATTTATTTATACAT+CGG 0.486377 1_1:-75762759 Msa0044260:three_prime_UTR
ACTATCATAGTCACTACTAC+TGG 0.487570 1_1:+75762517 None:intergenic
ATGCTAATGTTCGATATGCT+TGG 0.490597 1_1:-75763215 Msa0044260:three_prime_UTR
GATGAAACCATCCATCCAAA+TGG 0.493626 1_1:+75762219 None:intergenic
GATGAAACCATCCATCCAAA+TGG 0.493626 1_1:+75769255 None:intergenic
CGGAAGCAGCATAAATTTCA+GGG 0.494199 1_1:+75763709 None:intergenic
AGTAGTAGTGACTATGATAG+TGG 0.498552 1_1:-75762515 Msa0044260:three_prime_UTR
TTCGGTTCACTCCATTTGGA+TGG 0.501456 1_1:-75762230 Msa0044260:three_prime_UTR
TTCGGTTCACTCCATTTGGA+TGG 0.501456 1_1:-75769266 Msa0044260:five_prime_UTR
AATATGGAGCTTCTCCATCC+TGG 0.503567 1_1:-75762557 Msa0044260:three_prime_UTR
AGTTTATTTGAAACTTCTAA+AGG 0.504612 1_1:-75764286 Msa0044260:CDS
GCTTGGCTTGCTTCTTCCAA+AGG 0.505689 1_1:-75763198 Msa0044260:three_prime_UTR
TGGAGTAGGTGCATCCAAGT+TGG 0.506701 1_1:-75763583 Msa0044260:three_prime_UTR
GAAAGAAACAAGTTTCCAAA+AGG 0.508616 1_1:+75762110 None:intergenic
GAAAGAAACAAGTTTCCAAA+AGG 0.508616 1_1:+75769146 None:intergenic
TCAAAACAAAATTTAAAAGC+AGG 0.510392 1_1:+75761028 None:intergenic
TCCAAACATTCTTGATGTCA+TGG 0.510629 1_1:-75764328 Msa0044260:CDS
ATACCTCAGGGAATTCCAAC+TGG 0.510962 1_1:-75761714 Msa0044260:intron
TATGTACCATCTGCACTTCA+GGG 0.512959 1_1:-75761595 Msa0044260:intron
GCTGTGGAGGTAGAGTTAAA+TGG 0.513139 1_1:-75763834 Msa0044260:three_prime_UTR
AACATGGGAAATGGAAGTGT+TGG 0.515790 1_1:-75763459 Msa0044260:three_prime_UTR
GGAGTTGAAATAAATGGAGT+AGG 0.517207 1_1:-75763597 Msa0044260:three_prime_UTR
AACATGCTTAAAGGTGACAT+TGG 0.523449 1_1:+75763542 None:intergenic
GGTCATGAATCTTTGTTCCA+AGG 0.527808 1_1:-75763645 Msa0044260:three_prime_UTR
AAAAGTCCAGCACAAGATGA+TGG 0.528460 1_1:+75763811 None:intergenic
TCCACTCACATCCCAAAAGA+AGG 0.531626 1_1:+75762053 None:intergenic
TAACAAATTCTGGATAGATG+TGG 0.531780 1_1:+75762435 None:intergenic
AAACTGTACCAGTGAGGGTG+TGG 0.533415 1_1:+75764304 None:intergenic
GGGGTTAATTCAGCTAGCCA+TGG 0.534332 1_1:-75762016 Msa0044260:three_prime_UTR
GGGGTTAATTCAGCTAGCCA+TGG 0.534332 1_1:-75769052 Msa0044260:CDS
TCCACTCACATCCCAAAAGA+AGG 0.536769 1_1:+75769089 None:intergenic
ACTATGATGAATTGTGGGCT+TGG 0.536837 1_1:-75763165 Msa0044260:three_prime_UTR
AACACGACAAATTCAAGCCT+AGG 0.540566 1_1:+75762993 None:intergenic
GTCATGGTCCACACCCTCAC+TGG 0.541537 1_1:-75764312 Msa0044260:CDS
ATTCAACCTGGCAAAAGGAC+AGG 0.542093 1_1:+75763080 None:intergenic
ATAAGTTTCATATCCTCTGC+AGG 0.543701 1_1:+75761621 None:intergenic
GATGTACATTGAGGTAATAC+TGG 0.544556 1_1:+75764086 None:intergenic
CTATCAAAATGGTGGATGGA+AGG 0.546660 1_1:-75763913 Msa0044260:three_prime_UTR
GTAGTAGTGACTATGATAGT+GGG 0.547301 1_1:-75762514 Msa0044260:three_prime_UTR
GGACGGTACTGTCTAGTGCC+AGG 0.550759 1_1:+75762539 None:intergenic
TCCACCGCCTCTTCTAACTA+GGG 0.551254 1_1:-75765075 Msa0044260:intron
AACAAATTCTGGATAGATGT+GGG 0.554025 1_1:+75762436 None:intergenic
AAATGGCCATCATCTTGTGC+TGG 0.555550 1_1:-75763817 Msa0044260:three_prime_UTR
TGATGATTAGAAATTCAACC+TGG 0.557653 1_1:+75763068 None:intergenic
CTATCATAGTCACTACTACT+GGG 0.559417 1_1:+75762518 None:intergenic
ACCCTAGTTAGAAGAGGCGG+TGG 0.560788 1_1:+75765074 None:intergenic
CTGCACCGATGTACTTGAGA+AGG 0.562181 1_1:+75763293 None:intergenic
GAGTAGGTGCATCCAAGTTG+GGG 0.564548 1_1:-75763581 Msa0044260:three_prime_UTR
AGCCCACAATTCATCATAGT+AGG 0.565165 1_1:+75763168 None:intergenic
TTTATGCTGCTTCCGATGAA+GGG 0.565221 1_1:-75763701 Msa0044260:three_prime_UTR
TTACCTACTATGATGAATTG+TGG 0.569110 1_1:-75763171 Msa0044260:three_prime_UTR
AAGGTCTCTTCTGATGCTGA+AGG 0.569414 1_1:-75762404 Msa0044260:three_prime_UTR
ATTGCTTGGATTGATGAGAC+AGG 0.571658 1_1:-75763744 Msa0044260:three_prime_UTR
TGAAGATAGCAGTAATAACA+TGG 0.572879 1_1:-75763475 Msa0044260:three_prime_UTR
AATTTGATAGTTGTGTTGCA+TGG 0.574679 1_1:-75762795 Msa0044260:three_prime_UTR
CGTTCAGAGTCTTCGAGAGT+AGG 0.575834 1_1:-75761977 Msa0044260:three_prime_UTR
CGTTCAGAGTCTTCGAGAGT+AGG 0.575834 1_1:-75769013 Msa0044260:CDS
TCTAAATGCATGCATGGCAT+TGG 0.576632 1_1:-75763123 Msa0044260:three_prime_UTR
TGCACCGATGTACTTGAGAA+GGG 0.577902 1_1:+75763294 None:intergenic
ACCTTGTGTTGAAGAAGACC+AGG 0.580336 1_1:+75761403 None:intergenic
CATAAACAAGGTTCCTGCAG+AGG 0.585357 1_1:-75761634 Msa0044260:three_prime_UTR
CCATATTCCCCATTATTACA+CGG 0.586757 1_1:+75762573 None:intergenic
AAGAGGCGGTGGAGACAAAG+AGG 0.587317 1_1:+75765085 None:intergenic
TCTGCATCTAAATGCATGCA+TGG 0.588450 1_1:-75763129 Msa0044260:three_prime_UTR
CTGAAGCTTCAACATCCCCT+CGG 0.589448 1_1:-75761686 Msa0044260:three_prime_UTR
GGTACTGTCTAGTGCCAGGA+TGG 0.592202 1_1:+75762543 None:intergenic
TCAAACATATGAGATTGAAA+GGG 0.594105 1_1:-75764037 Msa0044260:three_prime_UTR
TACATACCCTGAAGTGCAGA+TGG 0.595712 1_1:+75761589 None:intergenic
TACTAATATATCTCTCTGCA+TGG 0.596190 1_1:-75762893 Msa0044260:three_prime_UTR
GAGACAAAGAGGACGACTGA+AGG 0.596610 1_1:+75765096 None:intergenic
CAAATAAACTGTACCAGTGA+GGG 0.596715 1_1:+75764299 None:intergenic
GAGATCATAAGGCCCTTCAT+CGG 0.599029 1_1:+75763689 None:intergenic
GAAGCTTCAGGCGAACCAGT+TGG 0.600300 1_1:+75761699 None:intergenic
GCAGCAACCAAACAGAACTC+TGG 0.605242 1_1:+75764262 None:intergenic
TGAAGTGACAGATTAATTTG+AGG 0.605937 1_1:+75760846 None:intergenic
GTACTTAATGGGTTGATCAG+AGG 0.607843 1_1:-75762272 Msa0044260:three_prime_UTR
TGGTCTATCAAAATGGTGGA+TGG 0.608244 1_1:-75763917 Msa0044260:three_prime_UTR
TATATGAATTATAAGAAGAG+CGG 0.609096 1_1:-75763957 Msa0044260:three_prime_UTR
TGATGTAAAGAAAGCAGCTG+TGG 0.610026 1_1:-75763850 Msa0044260:three_prime_UTR
GAGTCATATTGGACGATCGT+TGG 0.611529 1_1:-75763988 Msa0044260:three_prime_UTR
ACCTGGTCTTCTTCAACACA+AGG 0.612227 1_1:-75761404 Msa0044260:intron
TTGCGATGTTGACGAAAATG+GGG 0.614839 1_1:-75762615 Msa0044260:three_prime_UTR
CCGATGTATAAATAAATAAG+GGG 0.615516 1_1:+75762759 None:intergenic
ACTAATAACACCAAGAAACA+AGG 0.615567 1_1:-75764063 Msa0044260:three_prime_UTR
GGAATGTGCTTAATCTGAAG+CGG 0.619402 1_1:-75764154 Msa0044260:three_prime_UTR
ATAATTGGTCTAGAAATCAA+AGG 0.620545 1_1:+75762936 None:intergenic
TGTAAAGAAAGCAGCTGTGG+AGG 0.623964 1_1:-75763847 Msa0044260:three_prime_UTR
TGGATGGAAGGACTTTCCAC+AGG 0.627657 1_1:-75763901 Msa0044260:three_prime_UTR
CATAGTCACTACTACTGGGA+CGG 0.629627 1_1:+75762522 None:intergenic
TTGGTCTAGAAATCAAAGGA+AGG 0.633222 1_1:+75762940 None:intergenic
ACACAAACCCTAGTTAGAAG+AGG 0.633716 1_1:+75765068 None:intergenic
AAACAAGTTTCCAAAAGGAA+CGG 0.638549 1_1:+75762115 None:intergenic
AAACAAGTTTCCAAAAGGAA+CGG 0.638549 1_1:+75769151 None:intergenic
ACCAAATCAACAGCATCCTG+TGG 0.639973 1_1:+75763885 None:intergenic
GAAGATAGCAGTAATAACAT+GGG 0.640382 1_1:-75763474 Msa0044260:three_prime_UTR
GTTATTAGTGATGTACATTG+AGG 0.640455 1_1:+75764077 None:intergenic
TCAAATAAACTGTACCAGTG+AGG 0.646982 1_1:+75764298 None:intergenic
GCACCGATGTACTTGAGAAG+GGG 0.647364 1_1:+75763295 None:intergenic
TTACCCCTTCTCAAGTACAT+CGG 0.652782 1_1:-75763298 Msa0044260:three_prime_UTR
TGCATGCATTTAGATGCAGA+TGG 0.653425 1_1:+75763132 None:intergenic
TTGCTTGGATTGATGAGACA+GGG 0.654779 1_1:-75763743 Msa0044260:three_prime_UTR
CATGGAAGCAAACAACGGAA+AGG 0.655703 1_1:-75764186 Msa0044260:CDS
GTGATCAAAATGGAATCTTG+AGG 0.658713 1_1:-75761167 Msa0044260:three_prime_UTR
TAGTGACTATGATAGTGGGG+TGG 0.665276 1_1:-75762510 Msa0044260:three_prime_UTR
TTGATGGTCTATCAAAATGG+TGG 0.667750 1_1:-75763921 Msa0044260:three_prime_UTR
ATTGTTCCAGTAGATAAACA+TGG 0.675260 1_1:-75764204 Msa0044260:CDS
TAGTAGTGACTATGATAGTG+GGG 0.676289 1_1:-75762513 Msa0044260:three_prime_UTR
CAAACCCTAGTTAGAAGAGG+CGG 0.693958 1_1:+75765071 None:intergenic
ATAAACATGGAAGCAAACAA+CGG 0.703722 1_1:-75764191 Msa0044260:CDS
AGTAGGTGCATCCAAGTTGG+GGG 0.717707 1_1:-75763580 Msa0044260:three_prime_UTR
ACTCTCGAAGACTCTGAACG+TGG 0.722742 1_1:+75761980 None:intergenic
ACTCTCGAAGACTCTGAACG+TGG 0.722742 1_1:+75769016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAATTTAATATT+TGG - chr1_1:75763293-75763312 Msa0044260:three_prime_UTR 0.0%
!!! ATTATAAGGATAATAAATTT+TGG + chr1_1:75763485-75763504 None:intergenic 10.0%
!! ATCTTTATAACATAAATATT+TGG - chr1_1:75764007-75764026 Msa0044260:three_prime_UTR 10.0%
!! TTAAACATAAAGAAAAAAAA+TGG + chr1_1:75764335-75764354 None:intergenic 10.0%
!!! AAATGTAATTTAATTTCATT+AGG + chr1_1:75766589-75766608 None:intergenic 10.0%
!! AATGAAATTAAATTACATTT+AGG - chr1_1:75766589-75766608 Msa0044260:intron 10.0%
!! CTTATTATAATATTGGTATA+TGG - chr1_1:75760890-75760909 Msa0044260:three_prime_UTR 15.0%
!!! TTTTTTACTGTTTTTTTATC+TGG - chr1_1:75761359-75761378 Msa0044260:intron 15.0%
!! ATATGTTCTAATTGTTTAAA+TGG - chr1_1:75761956-75761975 Msa0044260:intron 15.0%
!! ACAATAGTTAAATCTTAAAT+AGG - chr1_1:75762262-75762281 Msa0044260:three_prime_UTR 15.0%
!!! ATAAACTCAATAATAAGTTT+TGG + chr1_1:75762720-75762739 None:intergenic 15.0%
!!! GTATTTATGCTTTTATTATA+AGG + chr1_1:75763499-75763518 None:intergenic 15.0%
!! AAATAAAATAGTATATCAAG+TGG - chr1_1:75763587-75763606 Msa0044260:three_prime_UTR 15.0%
!! AATAAAATAGTATATCAAGT+GGG - chr1_1:75763588-75763607 Msa0044260:three_prime_UTR 15.0%
!!! ATTATGTAATTATTTGGTTT+GGG + chr1_1:75763930-75763949 None:intergenic 15.0%
!! TATTATGTAATTATTTGGTT+TGG + chr1_1:75763931-75763950 None:intergenic 15.0%
!! AAAATTCATTCAAATTACAA+AGG + chr1_1:75764114-75764133 None:intergenic 15.0%
!!! TTTTTTTCTTTCAAATTACA+AGG - chr1_1:75764192-75764211 Msa0044260:CDS 15.0%
!! CTTAAAATTTATAGGATTAA+TGG + chr1_1:75764281-75764300 None:intergenic 15.0%
!!! CATTAATCCTATAAATTTTA+AGG - chr1_1:75764279-75764298 Msa0044260:CDS 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_1:75764903-75764922 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_1:75764902-75764921 Msa0044260:intron 15.0%
!!! AAATATTTTTCTTATCTTCT+TGG - chr1_1:75765679-75765698 Msa0044260:intron 15.0%
!! CCATTCTTAAATAAAATAAT+TGG + chr1_1:75767289-75767308 None:intergenic 15.0%
!!! CCAATTATTTTATTTAAGAA+TGG - chr1_1:75767286-75767305 Msa0044260:intron 15.0%
!! TAATATTATAGAACATTTCA+AGG + chr1_1:75767390-75767409 None:intergenic 15.0%
!!! TACATTTTCTTAACAAAAAA+AGG - chr1_1:75767868-75767887 Msa0044260:intron 15.0%
!! CTTATTATAATATTGGTATA+TGG - chr1_1:75760890-75760909 Msa0044260:three_prime_UTR 15.0%
!!! TTTTTTACTGTTTTTTTATC+TGG - chr1_1:75761359-75761378 Msa0044260:intron 15.0%
!! ACAATAGTTAAATCTTAAAT+AGG - chr1_1:75762262-75762281 Msa0044260:three_prime_UTR 15.0%
!! AAGAAAAAAATGGATAGAAT+AGG + chr1_1:75760873-75760892 None:intergenic 20.0%
!!! AGTGGAAGAATAATATTTTT+GGG - chr1_1:75761135-75761154 Msa0044260:three_prime_UTR 20.0%
!!! ATGATTTTTTGAAAAAGTTG+AGG - chr1_1:75761709-75761728 Msa0044260:intron 20.0%
!! TCAAAACAAAATTTAAAAGC+AGG + chr1_1:75762152-75762171 None:intergenic 20.0%
!!! AAATCTTAAATAGGCTTTTA+TGG - chr1_1:75762271-75762290 Msa0044260:three_prime_UTR 20.0%
!! TGTATTTAGATATTCCTTAA+TGG - chr1_1:75762300-75762319 Msa0044260:three_prime_UTR 20.0%
!! TTGCGTAAGAAAAAAAAATT+GGG - chr1_1:75762462-75762481 Msa0044260:three_prime_UTR 20.0%
!!! GAAATTTTGTATCTATAAGA+TGG - chr1_1:75762533-75762552 Msa0044260:three_prime_UTR 20.0%
!!! AATAATAAGTTTTGGTATGT+TGG + chr1_1:75762712-75762731 None:intergenic 20.0%
!! ATTCTTGATATTATTCATCA+TGG + chr1_1:75762903-75762922 None:intergenic 20.0%
!! TGAATAATATCAAGAATAGA+TGG - chr1_1:75762906-75762925 Msa0044260:three_prime_UTR 20.0%
!! CAAATTCAATTCAAAGTTAA+AGG - chr1_1:75762937-75762956 Msa0044260:three_prime_UTR 20.0%
!! AAAATTATTCAAATAGAGAG+TGG - chr1_1:75763527-75763546 Msa0044260:three_prime_UTR 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1_1:75764816-75764835 None:intergenic 20.0%
!!! TAGTTTTAAAGGTAATACTT+TGG + chr1_1:75764879-75764898 None:intergenic 20.0%
!!! TAACTATTGGTTAGTTTTAA+AGG + chr1_1:75764890-75764909 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_1:75764893-75764912 Msa0044260:intron 20.0%
!! TCTTAGATTCATTTAATAGT+TGG + chr1_1:75765007-75765026 None:intergenic 20.0%
!! TTAATCGTTGTTTATAACAT+CGG - chr1_1:75765030-75765049 Msa0044260:intron 20.0%
!!! GATAATAAATTGTTTTTGAG+AGG - chr1_1:75765228-75765247 Msa0044260:intron 20.0%
!! TATTGATCTGTTGATATATA+TGG - chr1_1:75765311-75765330 Msa0044260:intron 20.0%
!!! TGTTTTAGTTTTTTTCTGAT+TGG - chr1_1:75765360-75765379 Msa0044260:intron 20.0%
!!! ACAATCAATCTAAAATAGTT+TGG + chr1_1:75765736-75765755 None:intergenic 20.0%
!! AGAATAGGTAACTAATATAT+AGG + chr1_1:75765834-75765853 None:intergenic 20.0%
!!! AGTTTATTTGAAACTTCTAA+AGG - chr1_1:75765921-75765940 Msa0044260:intron 20.0%
!! TATATGAATTATAAGAAGAG+CGG - chr1_1:75766250-75766269 Msa0044260:intron 20.0%
!!! TATACTTTTATTTTGCTCAA+CGG + chr1_1:75766779-75766798 None:intergenic 20.0%
!! GCATATAATGAAATTGTATA+TGG - chr1_1:75766808-75766827 Msa0044260:intron 20.0%
!! ATAAATAAATAAGGGGAAAA+AGG + chr1_1:75767444-75767463 None:intergenic 20.0%
!! ACCGATGTATAAATAAATAA+GGG + chr1_1:75767452-75767471 None:intergenic 20.0%
!! TTGAAACTAATAACAAATTC+TGG + chr1_1:75767785-75767804 None:intergenic 20.0%
!!! AGAATTTGTTATTAGTTTCA+AGG - chr1_1:75767784-75767803 Msa0044260:intron 20.0%
!! AAGAAAAAAATGGATAGAAT+AGG + chr1_1:75760873-75760892 None:intergenic 20.0%
!!! TAACTAGTTGATATATGATT+CGG - chr1_1:75767959-75767978 Msa0044260:intron 20.0%
!!! AGTGGAAGAATAATATTTTT+GGG - chr1_1:75761135-75761154 Msa0044260:three_prime_UTR 20.0%
!!! ATGATTTTTTGAAAAAGTTG+AGG - chr1_1:75761709-75761728 Msa0044260:intron 20.0%
!! ATATGTCCTAATTGTTTAAA+TGG - chr1_1:75768986-75769005 Msa0044260:intron 20.0%
!! TCAAAACAAAATTTAAAAGC+AGG + chr1_1:75762152-75762171 None:intergenic 20.0%
!!! AAATCTTAAATAGGCTTTTA+TGG - chr1_1:75762271-75762290 Msa0044260:three_prime_UTR 20.0%
!! TGTATTTAGATATTCCTTAA+TGG - chr1_1:75762300-75762319 Msa0044260:three_prime_UTR 20.0%
! TATTGGTATATGGTACTTAA+TGG - chr1_1:75760900-75760919 Msa0044260:three_prime_UTR 25.0%
! ATTGGTATATGGTACTTAAT+GGG - chr1_1:75760901-75760920 Msa0044260:three_prime_UTR 25.0%
!! GTTCTAGTTGATATATGATT+CGG - chr1_1:75760923-75760942 Msa0044260:three_prime_UTR 25.0%
!!! TTTTTTTACAGACCTTCTTT+TGG - chr1_1:75761106-75761125 Msa0044260:three_prime_UTR 25.0%
!!! TTTTTTACAGACCTTCTTTT+GGG - chr1_1:75761107-75761126 Msa0044260:three_prime_UTR 25.0%
!! GAGTGGAAGAATAATATTTT+TGG - chr1_1:75761134-75761153 Msa0044260:three_prime_UTR 25.0%
!!! GTGGAAGAATAATATTTTTG+GGG - chr1_1:75761136-75761155 Msa0044260:three_prime_UTR 25.0%
!!! TGTTTTTTTATCTGGAGTTT+TGG - chr1_1:75761367-75761386 Msa0044260:intron 25.0%
!! TCCAATCAGTTTTTGAATTA+TGG - chr1_1:75761433-75761452 Msa0044260:three_prime_UTR 25.0%
!! CCAATCAGTTTTTGAATTAT+GGG - chr1_1:75761434-75761453 Msa0044260:three_prime_UTR 25.0%
!!! ATTGTTTTATGTTAATCACC+AGG - chr1_1:75761668-75761687 Msa0044260:three_prime_UTR 25.0%
!! CAATATTCACAGATTCATTT+TGG + chr1_1:75762110-75762129 None:intergenic 25.0%
!! TGTGAATATTGTTAGTTCTT+GGG - chr1_1:75762119-75762138 Msa0044260:three_prime_UTR 25.0%
! TTAAGATTTAACTATTGTGC+TGG + chr1_1:75762260-75762279 None:intergenic 25.0%
!! ATTTAGAACCAATTCATTGT+CGG + chr1_1:75762389-75762408 None:intergenic 25.0%
! CTTGCGTAAGAAAAAAAAAT+TGG - chr1_1:75762461-75762480 Msa0044260:three_prime_UTR 25.0%
! TAAGAAAAAAAAATTGGGAG+TGG - chr1_1:75762467-75762486 Msa0044260:three_prime_UTR 25.0%
! ATTACTCAAGCTAAAAAAGA+TGG + chr1_1:75762645-75762664 None:intergenic 25.0%
!!! TTTTAGCTTGAGTAATGTAA+TGG - chr1_1:75762649-75762668 Msa0044260:three_prime_UTR 25.0%
!!! AGTATTGATGTGTTCTTTTT+TGG + chr1_1:75763120-75763139 None:intergenic 25.0%
! TTTAATATTTGGATACTCTC+CGG - chr1_1:75763304-75763323 Msa0044260:three_prime_UTR 25.0%
! GTATAAAAACTTGATATCAG+TGG - chr1_1:75763434-75763453 Msa0044260:three_prime_UTR 25.0%
!! AGAAAATGCTGAATTTTCTA+GGG + chr1_1:75763681-75763700 None:intergenic 25.0%
!! AAGAAAATGCTGAATTTTCT+AGG + chr1_1:75763682-75763701 None:intergenic 25.0%
! CATAGAGCCTTAAAATTTAT+AGG + chr1_1:75764289-75764308 None:intergenic 25.0%
!!! CTATAAATTTTAAGGCTCTA+TGG - chr1_1:75764287-75764306 Msa0044260:CDS 25.0%
! ATTTGTCTCTTAAACTAAGA+TGG - chr1_1:75764454-75764473 Msa0044260:intron 25.0%
! TATTCTTTATAACAGTGATC+AGG + chr1_1:75764645-75764664 None:intergenic 25.0%
! TATTCTCATAACTTAACTTC+TGG - chr1_1:75765176-75765195 Msa0044260:intron 25.0%
! TCAATACAGTCAAAAAAGTT+GGG + chr1_1:75765297-75765316 None:intergenic 25.0%
! ATCAATACAGTCAAAAAAGT+TGG + chr1_1:75765298-75765317 None:intergenic 25.0%
!!! GCATTTCTTGATTTTTAGTT+TGG - chr1_1:75765543-75765562 Msa0044260:intron 25.0%
! TAGCAGTTTAAAGAAAAAAG+CGG + chr1_1:75765598-75765617 None:intergenic 25.0%
! TTCTTTAAACTGCTAATGTT+AGG - chr1_1:75765603-75765622 Msa0044260:intron 25.0%
!!! ATCTAAAATAGTTTGGCTTT+CGG + chr1_1:75765729-75765748 None:intergenic 25.0%
! TCAAACATATGAGATTGAAA+GGG - chr1_1:75766170-75766189 Msa0044260:intron 25.0%
!! TATCAGATGAATTTGAAATC+TGG - chr1_1:75766427-75766446 Msa0044260:intron 25.0%
!! ATTTAATTTCATTAGGACCT+TGG + chr1_1:75766582-75766601 None:intergenic 25.0%
! CATTTAGGAGTTGAAATAAA+TGG - chr1_1:75766604-75766623 Msa0044260:intron 25.0%
! ATCAATTTGAACATGCTTAA+AGG + chr1_1:75766677-75766696 None:intergenic 25.0%
! TTCAAAATCATTATGATTGC+AGG + chr1_1:75766710-75766729 None:intergenic 25.0%
!! GTTGAGCAAAATAAAAGTAT+AGG - chr1_1:75766778-75766797 Msa0044260:intron 25.0%
! TGAAATTGTATATGGAAAGT+TGG - chr1_1:75766816-75766835 Msa0044260:intron 25.0%
! CTGAAATTACCAAAAATTGT+CGG - chr1_1:75766965-75766984 Msa0044260:intron 25.0%
! TGAAATTACCAAAAATTGTC+GGG - chr1_1:75766966-75766985 Msa0044260:intron 25.0%
! AATATTGTTGAAGTTATCCT+AGG - chr1_1:75767197-75767216 Msa0044260:intron 25.0%
!! ATAATTGGTCTAGAAATCAA+AGG + chr1_1:75767274-75767293 None:intergenic 25.0%
! CCGATGTATAAATAAATAAG+GGG + chr1_1:75767451-75767470 None:intergenic 25.0%
!! CCCCTTATTTATTTATACAT+CGG - chr1_1:75767448-75767467 Msa0044260:intron 25.0%
! CACCGATGTATAAATAAATA+AGG + chr1_1:75767453-75767472 None:intergenic 25.0%
! TTCTAGATTATTCGTTGTAA+TGG - chr1_1:75767527-75767546 Msa0044260:intron 25.0%
! TCTAGATTATTCGTTGTAAT+GGG - chr1_1:75767528-75767547 Msa0044260:intron 25.0%
! AATAACTAGCACTGTAAATA+AGG + chr1_1:75767574-75767593 None:intergenic 25.0%
!!! ATCCAAGAAACTTTTTAGTA+TGG - chr1_1:75767732-75767751 Msa0044260:intron 25.0%
! TTCCATACTAAAAAGTTTCT+TGG + chr1_1:75767737-75767756 None:intergenic 25.0%
! TATTGGTATATGGTACTTAA+TGG - chr1_1:75760900-75760919 Msa0044260:three_prime_UTR 25.0%
! ATTGGTATATGGTACTTAAT+GGG - chr1_1:75760901-75760920 Msa0044260:three_prime_UTR 25.0%
!!! TATATCATGCGTTTTTTTAC+AGG - chr1_1:75761095-75761114 Msa0044260:three_prime_UTR 25.0%
!! GAGTGGAAGAATAATATTTT+TGG - chr1_1:75761134-75761153 Msa0044260:three_prime_UTR 25.0%
!!! GTGGAAGAATAATATTTTTG+GGG - chr1_1:75761136-75761155 Msa0044260:three_prime_UTR 25.0%
!!! TGTTTTTTTATCTGGAGTTT+TGG - chr1_1:75761367-75761386 Msa0044260:intron 25.0%
!! TCCAATCAGTTTTTGAATTA+TGG - chr1_1:75761433-75761452 Msa0044260:three_prime_UTR 25.0%
!! CCAATCAGTTTTTGAATTAT+GGG - chr1_1:75761434-75761453 Msa0044260:three_prime_UTR 25.0%
!!! ATTGTTTTATGTTAATCACC+AGG - chr1_1:75761668-75761687 Msa0044260:three_prime_UTR 25.0%
! ATGAAGCCATTTAAACAATT+AGG + chr1_1:75761965-75761984 None:intergenic 25.0%
!! CAATATTCACAGATTCATTT+TGG + chr1_1:75762110-75762129 None:intergenic 25.0%
!! TGTGAATATTGTTAGTTCTT+GGG - chr1_1:75762119-75762138 Msa0044260:three_prime_UTR 25.0%
! TTAAGATTTAACTATTGTGC+TGG + chr1_1:75762260-75762279 None:intergenic 25.0%
AAACAAGTTTCCAAAAGGAA+CGG + chr1_1:75761059-75761078 None:intergenic 30.0%
GAAAGAAACAAGTTTCCAAA+AGG + chr1_1:75761064-75761083 None:intergenic 30.0%
! GAAATTTGGTATTGGAACTT+GGG + chr1_1:75761253-75761272 None:intergenic 30.0%
TCACAAAGGAAATTTGGTAT+TGG + chr1_1:75761261-75761280 None:intergenic 30.0%
TACCAAATTTCCTTTGTGAA+AGG - chr1_1:75761262-75761281 Msa0044260:intron 30.0%
CCCATAATTCAAAAACTGAT+TGG + chr1_1:75761437-75761456 None:intergenic 30.0%
! TTTTGCTGCTATCATAAACA+AGG - chr1_1:75761525-75761544 Msa0044260:intron 30.0%
TTTGATCACACAAGATGATT+TGG + chr1_1:75761999-75762018 None:intergenic 30.0%
ATCATCTTGTGTGATCAAAA+TGG - chr1_1:75762000-75762019 Msa0044260:three_prime_UTR 30.0%
!!! GAGGCTTACTTTATTTTGTA+CGG - chr1_1:75762029-75762048 Msa0044260:three_prime_UTR 30.0%
!!! AGGCTTACTTTATTTTGTAC+GGG - chr1_1:75762030-75762049 Msa0044260:three_prime_UTR 30.0%
! CTGTGAATATTGTTAGTTCT+TGG - chr1_1:75762118-75762137 Msa0044260:three_prime_UTR 30.0%
! TGAAGTGACAGATTAATTTG+AGG + chr1_1:75762334-75762353 None:intergenic 30.0%
! TTTTTCTTTCCAACAATCCA+CGG + chr1_1:75762359-75762378 None:intergenic 30.0%
ATTTACTACCGACAATGAAT+TGG - chr1_1:75762378-75762397 Msa0044260:three_prime_UTR 30.0%
!! GACAATGAATTGGTTCTAAA+TGG - chr1_1:75762388-75762407 Msa0044260:three_prime_UTR 30.0%
!! GAAAAGAAAAAGTTGATGTG+TGG - chr1_1:75762567-75762586 Msa0044260:three_prime_UTR 30.0%
!! TGAATGCTAGATTAGTTTCT+TGG + chr1_1:75762747-75762766 None:intergenic 30.0%
!!! ATTGGTTTTGCTATAGTAAC+AGG + chr1_1:75762811-75762830 None:intergenic 30.0%
TACTATAGCAAAACCAATTC+AGG - chr1_1:75762813-75762832 Msa0044260:three_prime_UTR 30.0%
ATATCAAGAATAGATGGTCA+TGG - chr1_1:75762912-75762931 Msa0044260:three_prime_UTR 30.0%
AATGCTACACTATATCCAAA+AGG - chr1_1:75763042-75763061 Msa0044260:three_prime_UTR 30.0%
! AACACTAACAATGTTCCTTT+TGG + chr1_1:75763060-75763079 None:intergenic 30.0%
!!! TGGATATAGTGCTTCTTTTT+TGG + chr1_1:75763100-75763119 None:intergenic 30.0%
! CAAAATAGATGATTTGGCAA+GGG + chr1_1:75764144-75764163 None:intergenic 30.0%
! ACAAAATAGATGATTTGGCA+AGG + chr1_1:75764145-75764164 None:intergenic 30.0%
! GCCAAATCATCTATTTTGTA+CGG - chr1_1:75764146-75764165 Msa0044260:three_prime_UTR 30.0%
ACCGTACAAAATAGATGATT+TGG + chr1_1:75764150-75764169 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_1:75764751-75764770 None:intergenic 30.0%
TGTGCAAAATATCAATTGGA+AGG + chr1_1:75764850-75764869 None:intergenic 30.0%
GTAGTGTGCAAAATATCAAT+TGG + chr1_1:75764854-75764873 None:intergenic 30.0%
!! ACATGACACTCATTTTGAAA+CGG - chr1_1:75764969-75764988 Msa0044260:intron 30.0%
!!! CACTGGTTTTGCTTATATAT+TGG - chr1_1:75765066-75765085 Msa0044260:intron 30.0%
!! TGGTTTTGCTTATATATTGG+AGG - chr1_1:75765069-75765088 Msa0044260:intron 30.0%
!!! AAATTGTTTTTGAGAGGAAG+AGG - chr1_1:75765234-75765253 Msa0044260:intron 30.0%
TTGGGGTAAAATCGAAAAAT+CGG + chr1_1:75765279-75765298 None:intergenic 30.0%
CAATACAGTCAAAAAAGTTG+GGG + chr1_1:75765296-75765315 None:intergenic 30.0%
GATTCTATGATCGTGATTAT+AGG - chr1_1:75765396-75765415 Msa0044260:intron 30.0%
TTTATGCCAGAAAAACATTC+CGG + chr1_1:75765662-75765681 None:intergenic 30.0%
!! TCTAAAATAGTTTGGCTTTC+GGG + chr1_1:75765728-75765747 None:intergenic 30.0%
!! ATTGATTGTTTTATCACGCA+TGG - chr1_1:75765747-75765766 Msa0044260:intron 30.0%
ATTGTTCCAGTAGATAAACA+TGG - chr1_1:75766003-75766022 Msa0044260:intron 30.0%
ATAAACATGGAAGCAAACAA+CGG - chr1_1:75766016-75766035 Msa0044260:intron 30.0%
GTTATTAGTGATGTACATTG+AGG + chr1_1:75766133-75766152 None:intergenic 30.0%
ACTAATAACACCAAGAAACA+AGG - chr1_1:75766144-75766163 Msa0044260:intron 30.0%
GTCAAACATATGAGATTGAA+AGG - chr1_1:75766169-75766188 Msa0044260:intron 30.0%
ATATGACTCTCTGATTTCAT+TGG + chr1_1:75766208-75766227 None:intergenic 30.0%
ATGAAATCAGAGAGTCATAT+TGG - chr1_1:75766208-75766227 Msa0044260:intron 30.0%
TGAAGATAGCAGTAATAACA+TGG - chr1_1:75766732-75766751 Msa0044260:intron 30.0%
GAAGATAGCAGTAATAACAT+GGG - chr1_1:75766733-75766752 Msa0044260:intron 30.0%
TGTATATGGAAAGTTGGATT+TGG - chr1_1:75766822-75766841 Msa0044260:intron 30.0%
TGTGCAAAAGATGTTTCTTA+AGG - chr1_1:75766849-75766868 Msa0044260:intron 30.0%
GTGCAAAAGATGTTTCTTAA+GGG - chr1_1:75766850-75766869 Msa0044260:intron 30.0%
GAAATTACCAAAAATTGTCG+GGG - chr1_1:75766967-75766986 Msa0044260:intron 30.0%
AAATTACCAAAAATTGTCGG+GGG - chr1_1:75766968-75766987 Msa0044260:intron 30.0%
TTACCTACTATGATGAATTG+TGG - chr1_1:75767036-75767055 Msa0044260:intron 30.0%
TACCTACTATGATGAATTGT+GGG - chr1_1:75767037-75767056 Msa0044260:intron 30.0%
TGATGATTAGAAATTCAACC+TGG + chr1_1:75767142-75767161 None:intergenic 30.0%
TACTAATATATCTCTCTGCA+TGG - chr1_1:75767314-75767333 Msa0044260:intron 30.0%
! AATTTGATAGTTGTGTTGCA+TGG - chr1_1:75767412-75767431 Msa0044260:intron 30.0%
CTAAAAAGTTTCTTGGATTG+TGG + chr1_1:75767730-75767749 None:intergenic 30.0%
AACAAATTCTGGATAGATGT+GGG + chr1_1:75767774-75767793 None:intergenic 30.0%
TAACAAATTCTGGATAGATG+TGG + chr1_1:75767775-75767794 None:intergenic 30.0%
AAACAAGTTTCCAAAAGGAA+CGG + chr1_1:75761059-75761078 None:intergenic 30.0%
GAAAGAAACAAGTTTCCAAA+AGG + chr1_1:75761064-75761083 None:intergenic 30.0%
!!! TTTTTTTACAGGCCTTCTTT+TGG - chr1_1:75768142-75768161 Msa0044260:intron 30.0%
!!! TTTTTTACAGGCCTTCTTTT+GGG - chr1_1:75768143-75768162 Msa0044260:intron 30.0%
! GAAATTTGGTATTGGAACTT+GGG + chr1_1:75761253-75761272 None:intergenic 30.0%
TCACAAAGGAAATTTGGTAT+TGG + chr1_1:75761261-75761280 None:intergenic 30.0%
TACCAAATTTCCTTTGTGAA+AGG - chr1_1:75761262-75761281 Msa0044260:intron 30.0%
CCCATAATTCAAAAACTGAT+TGG + chr1_1:75761437-75761456 None:intergenic 30.0%
! TTTTGCTGCTATCATAAACA+AGG - chr1_1:75761525-75761544 Msa0044260:intron 30.0%
TTTGATCACACAAGATGATT+TGG + chr1_1:75761999-75762018 None:intergenic 30.0%
ATCATCTTGTGTGATCAAAA+TGG - chr1_1:75762000-75762019 Msa0044260:three_prime_UTR 30.0%
!!! GAGGCTTACTTTATTTTGTA+CGG - chr1_1:75762029-75762048 Msa0044260:three_prime_UTR 30.0%
!!! AGGCTTACTTTATTTTGTAC+GGG - chr1_1:75762030-75762049 Msa0044260:three_prime_UTR 30.0%
! CTGTGAATATTGTTAGTTCT+TGG - chr1_1:75762118-75762137 Msa0044260:three_prime_UTR 30.0%
! GGAAATTTGGTATTGGAACT+TGG + chr1_1:75761254-75761273 None:intergenic 35.0%
TGCCTTTCACAAAGGAAATT+TGG + chr1_1:75761267-75761286 None:intergenic 35.0%
AAATACACTGCCTTTCACAA+AGG + chr1_1:75761275-75761294 None:intergenic 35.0%
TTTGAATTATGGGATACCTC+AGG - chr1_1:75761444-75761463 Msa0044260:three_prime_UTR 35.0%
TTGAATTATGGGATACCTCA+GGG - chr1_1:75761445-75761464 Msa0044260:three_prime_UTR 35.0%
ATAAGTTTCATATCCTCTGC+AGG + chr1_1:75761553-75761572 None:intergenic 35.0%
!! GTAATGTAAACTAGCTTTGC+TGG - chr1_1:75761602-75761621 Msa0044260:three_prime_UTR 35.0%
GATATCAATTAAGACCGAGA+GGG + chr1_1:75761632-75761651 None:intergenic 35.0%
AGATATCAATTAAGACCGAG+AGG + chr1_1:75761633-75761652 None:intergenic 35.0%
AAAAAGTTGAGGTCAGTTGT+GGG - chr1_1:75761720-75761739 Msa0044260:intron 35.0%
!! AACACAAGGTACTTTTCTCA+AGG - chr1_1:75761781-75761800 Msa0044260:intron 35.0%
!!! AGGCTTTGATTTTTTCTGCA+AGG - chr1_1:75761801-75761820 Msa0044260:intron 35.0%
TTAAATAGAGGGGGAAACTT+TGG + chr1_1:75761892-75761911 None:intergenic 35.0%
GTGATCAAAATGGAATCTTG+AGG - chr1_1:75762010-75762029 Msa0044260:three_prime_UTR 35.0%
!!! GGCTTACTTTATTTTGTACG+GGG - chr1_1:75762031-75762050 Msa0044260:three_prime_UTR 35.0%
!!! TTACTTTATTTTGTACGGGG+AGG - chr1_1:75762034-75762053 Msa0044260:three_prime_UTR 35.0%
CCTTTACACTTCAAACTTTG+CGG - chr1_1:75762060-75762079 Msa0044260:three_prime_UTR 35.0%
GTATGTTCCATGTCAAAAAC+AGG + chr1_1:75762181-75762200 None:intergenic 35.0%
TTGAGGTGCAAAAACCATTA+AGG + chr1_1:75762317-75762336 None:intergenic 35.0%
!! GAATTGGTTCTAAATGGCAA+CGG - chr1_1:75762394-75762413 Msa0044260:three_prime_UTR 35.0%
AGTCATGACCACTTGTTTAA+GGG + chr1_1:75762428-75762447 None:intergenic 35.0%
AAGTCATGACCACTTGTTTA+AGG + chr1_1:75762429-75762448 None:intergenic 35.0%
!! AAAAGTTGATGTGTGGTTTG+AGG - chr1_1:75762574-75762593 Msa0044260:three_prime_UTR 35.0%
ACTCAAGCTAAAAAAGATGG+TGG + chr1_1:75762642-75762661 None:intergenic 35.0%
TTCTAACAAACCTTGTTGGT+TGG + chr1_1:75762675-75762694 None:intergenic 35.0%
!! AAGTTTTGGTATGTTGGCAT+TGG + chr1_1:75762706-75762725 None:intergenic 35.0%
! GCATTGATGTATAACACTGA+TGG + chr1_1:75763027-75763046 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr1_1:75763384-75763403 Msa0044260:three_prime_UTR 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG - chr1_1:75763385-75763404 Msa0044260:three_prime_UTR 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG - chr1_1:75763386-75763405 Msa0044260:three_prime_UTR 35.0%
AACTCGCTCAAATTGATAGA+GGG + chr1_1:75763980-75763999 None:intergenic 35.0%
AAACTCGCTCAAATTGATAG+AGG + chr1_1:75763981-75764000 None:intergenic 35.0%
! CTATCAATTTGAGCGAGTTT+TGG - chr1_1:75763981-75764000 Msa0044260:three_prime_UTR 35.0%
TTTACCACTTGCATCGTTTA+GGG + chr1_1:75764256-75764275 None:intergenic 35.0%
TCTTTATAACAGTGATCAGG+TGG + chr1_1:75764642-75764661 None:intergenic 35.0%
TCGGAGAGTAATTAAAACAC+TGG - chr1_1:75765049-75765068 Msa0044260:intron 35.0%
TGGGGTAAAATCGAAAAATC+GGG + chr1_1:75765278-75765297 None:intergenic 35.0%
AGAGAAGAGAATGTACAACA+TGG - chr1_1:75765425-75765444 Msa0044260:intron 35.0%
TCCAAACATTCTTGATGTCA+TGG - chr1_1:75765879-75765898 Msa0044260:intron 35.0%
ACCATGACATCAAGAATGTT+TGG + chr1_1:75765883-75765902 None:intergenic 35.0%
CAAATAAACTGTACCAGTGA+GGG + chr1_1:75765911-75765930 None:intergenic 35.0%
TCAAATAAACTGTACCAGTG+AGG + chr1_1:75765912-75765931 None:intergenic 35.0%
TTGCTTCCATGTTTATCTAC+TGG + chr1_1:75766012-75766031 None:intergenic 35.0%
GATGTACATTGAGGTAATAC+TGG + chr1_1:75766124-75766143 None:intergenic 35.0%
! TGTTTGACAACCTTGTTTCT+TGG + chr1_1:75766157-75766176 None:intergenic 35.0%
! CGTTTGATGGTCTATCAAAA+TGG - chr1_1:75766283-75766302 Msa0044260:intron 35.0%
! TTGATGGTCTATCAAAATGG+TGG - chr1_1:75766286-75766305 Msa0044260:intron 35.0%
GGAGTTGAAATAAATGGAGT+AGG - chr1_1:75766610-75766629 Msa0044260:intron 35.0%
AACATGCTTAAAGGTGACAT+TGG + chr1_1:75766668-75766687 None:intergenic 35.0%
AGCAGTAATAACATGGGAAA+TGG - chr1_1:75766739-75766758 Msa0044260:intron 35.0%
AAGATGTTTCTTAAGGGAAC+TGG - chr1_1:75766856-75766875 Msa0044260:intron 35.0%
AATTACCAAAAATTGTCGGG+GGG - chr1_1:75766969-75766988 Msa0044260:intron 35.0%
ATGCTAATGTTCGATATGCT+TGG - chr1_1:75766992-75767011 Msa0044260:intron 35.0%
TAGAAATTCAACCTGGCAAA+AGG + chr1_1:75767135-75767154 None:intergenic 35.0%
TTGGTCTAGAAATCAAAGGA+AGG + chr1_1:75767270-75767289 None:intergenic 35.0%
AAATAAGGGGAAAAAGGTTC+TGG + chr1_1:75767438-75767457 None:intergenic 35.0%
!! TTCGTTGTAATGGGTAGAAA+AGG - chr1_1:75767537-75767556 Msa0044260:intron 35.0%
TATTGCGATGTTGACGAAAA+TGG - chr1_1:75767590-75767609 Msa0044260:intron 35.0%
ATTGCGATGTTGACGAAAAT+GGG - chr1_1:75767591-75767610 Msa0044260:intron 35.0%
! GTCTTTTGCCGTGTAATAAT+GGG - chr1_1:75767626-75767645 Msa0044260:intron 35.0%
! TCTTTTGCCGTGTAATAATG+GGG - chr1_1:75767627-75767646 Msa0044260:intron 35.0%
CCATATTCCCCATTATTACA+CGG + chr1_1:75767637-75767656 None:intergenic 35.0%
CTATCATAGTCACTACTACT+GGG + chr1_1:75767692-75767711 None:intergenic 35.0%
ACTATCATAGTCACTACTAC+TGG + chr1_1:75767693-75767712 None:intergenic 35.0%
AGTAGTAGTGACTATGATAG+TGG - chr1_1:75767692-75767711 Msa0044260:intron 35.0%
GTAGTAGTGACTATGATAGT+GGG - chr1_1:75767693-75767712 Msa0044260:intron 35.0%
! TAGTAGTGACTATGATAGTG+GGG - chr1_1:75767694-75767713 Msa0044260:intron 35.0%
! GGAAATTTGGTATTGGAACT+TGG + chr1_1:75761254-75761273 None:intergenic 35.0%
TGCCTTTCACAAAGGAAATT+TGG + chr1_1:75761267-75761286 None:intergenic 35.0%
AAATACACTGCCTTTCACAA+AGG + chr1_1:75761275-75761294 None:intergenic 35.0%
TTTGAATTATGGGATACCTC+AGG - chr1_1:75761444-75761463 Msa0044260:three_prime_UTR 35.0%
TTGAATTATGGGATACCTCA+GGG - chr1_1:75761445-75761464 Msa0044260:three_prime_UTR 35.0%
ATAAGTTTCATATCCTCTGC+AGG + chr1_1:75761553-75761572 None:intergenic 35.0%
!! GTAATGTAAACTAGCTTTGC+TGG - chr1_1:75761602-75761621 Msa0044260:three_prime_UTR 35.0%
GATATCAATTAAGACCGAGA+GGG + chr1_1:75761632-75761651 None:intergenic 35.0%
AGATATCAATTAAGACCGAG+AGG + chr1_1:75761633-75761652 None:intergenic 35.0%
AAAAAGTTGAGGTCAGTTGT+GGG - chr1_1:75761720-75761739 Msa0044260:intron 35.0%
!! AACACAAGGTACTTTTCTCA+AGG - chr1_1:75761781-75761800 Msa0044260:intron 35.0%
!!! AGGCTTTGATTTTTTCTGCA+AGG - chr1_1:75761801-75761820 Msa0044260:intron 35.0%
TTAAATAGAGGGGGAAACTT+TGG + chr1_1:75761892-75761911 None:intergenic 35.0%
GTGATCAAAATGGAATCTTG+AGG - chr1_1:75762010-75762029 Msa0044260:three_prime_UTR 35.0%
!!! GGCTTACTTTATTTTGTACG+GGG - chr1_1:75762031-75762050 Msa0044260:three_prime_UTR 35.0%
!!! TTACTTTATTTTGTACGGGG+AGG - chr1_1:75762034-75762053 Msa0044260:three_prime_UTR 35.0%
CCTTTACACTTCAAACTTTG+CGG - chr1_1:75762060-75762079 Msa0044260:three_prime_UTR 35.0%
GTATGTTCCATGTCAAAAAC+AGG + chr1_1:75762181-75762200 None:intergenic 35.0%
TTGAGGTGCAAAAACCATTA+AGG + chr1_1:75762317-75762336 None:intergenic 35.0%
!! ATGATTCGGTTCACTCCATT+TGG - chr1_1:75760937-75760956 Msa0044260:three_prime_UTR 40.0%
GATGAAACCATCCATCCAAA+TGG + chr1_1:75760955-75760974 None:intergenic 40.0%
! GATGGTTTCATCTTCTGGTT+GGG - chr1_1:75760963-75760982 Msa0044260:three_prime_UTR 40.0%
! TCTGAACGTGGCAAGATTTT+AGG + chr1_1:75761182-75761201 None:intergenic 40.0%
! AGTAGGCACTGTAAGTTCTT+TGG - chr1_1:75761211-75761230 Msa0044260:intron 40.0%
! GCAGCAAAAAGCGTAGAAAA+AGG + chr1_1:75761514-75761533 None:intergenic 40.0%
TGAAGTGCAGATGGTACATA+TGG + chr1_1:75761576-75761595 None:intergenic 40.0%
ATATGTACCATCTGCACTTC+AGG - chr1_1:75761575-75761594 Msa0044260:intron 40.0%
TATGTACCATCTGCACTTCA+GGG - chr1_1:75761576-75761595 Msa0044260:intron 40.0%
GAAAAAGTTGAGGTCAGTTG+TGG - chr1_1:75761719-75761738 Msa0044260:intron 40.0%
! AAACAGCAAGTATTGCCTCA+AGG + chr1_1:75761849-75761868 None:intergenic 40.0%
AGAGTCCAGCGTTAAATAGA+GGG + chr1_1:75761903-75761922 None:intergenic 40.0%
TAGAGTCCAGCGTTAAATAG+AGG + chr1_1:75761904-75761923 None:intergenic 40.0%
! CCGCAAAGTTTGAAGTGTAA+AGG + chr1_1:75762063-75762082 None:intergenic 40.0%
!!! ATCGCATCCTGTTTTTGACA+TGG - chr1_1:75762171-75762190 Msa0044260:three_prime_UTR 40.0%
ATTCGAGTCCCTTAAACAAG+TGG - chr1_1:75762417-75762436 Msa0044260:three_prime_UTR 40.0%
! TTTTTCTTACGCAAGAGCCA+TGG + chr1_1:75762456-75762475 None:intergenic 40.0%
AATGTAATGGCCAACCAACA+AGG - chr1_1:75762662-75762681 Msa0044260:three_prime_UTR 40.0%
GTCGTTCTAACAAACCTTGT+TGG + chr1_1:75762679-75762698 None:intergenic 40.0%
ACCAATTCAGGTGCTTCTAA+TGG - chr1_1:75762825-75762844 Msa0044260:three_prime_UTR 40.0%
!! TCCATTAGAAGCACCTGAAT+TGG + chr1_1:75762829-75762848 None:intergenic 40.0%
! AGTTGAGGTGTCTAGAAGAA+AGG + chr1_1:75762869-75762888 None:intergenic 40.0%
TAGACACCTCAACTTAACAG+TGG - chr1_1:75762875-75762894 Msa0044260:three_prime_UTR 40.0%
AGACACCTCAACTTAACAGT+GGG - chr1_1:75762876-75762895 Msa0044260:three_prime_UTR 40.0%
!! AACACTGATGGTGCTCTTTT+TGG + chr1_1:75763015-75763034 None:intergenic 40.0%
ACACAAGTATCCGTGAGTAT+CGG - chr1_1:75763236-75763255 Msa0044260:three_prime_UTR 40.0%
GATACTTTCCGATACGTATC+CGG + chr1_1:75763326-75763345 None:intergenic 40.0%
!! GGAAAGTATCGAGCAGATAT+CGG - chr1_1:75763336-75763355 Msa0044260:three_prime_UTR 40.0%
AAAACCCTAAACGATGCAAG+TGG - chr1_1:75764249-75764268 Msa0044260:CDS 40.0%
GTTTACCACTTGCATCGTTT+AGG + chr1_1:75764257-75764276 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_1:75764973-75764992 None:intergenic 40.0%
ACACAAACCCTAGTTAGAAG+AGG + chr1_1:75765142-75765161 None:intergenic 40.0%
AGAAAAACATTCCGGCTTTC+AGG + chr1_1:75765654-75765673 None:intergenic 40.0%
! TGAAAGCCGGAATGTTTTTC+TGG - chr1_1:75765653-75765672 Msa0044260:intron 40.0%
TAAAGGACCAGAGTTCTGTT+TGG - chr1_1:75765938-75765957 Msa0044260:intron 40.0%
GGAATGTGCTTAATCTGAAG+CGG - chr1_1:75766053-75766072 Msa0044260:intron 40.0%
! ATATTGGACGATCGTTGGTT+AGG - chr1_1:75766224-75766243 Msa0044260:intron 40.0%
GATAGACCATCAAACGTTCT+GGG + chr1_1:75766279-75766298 None:intergenic 40.0%
TGATAGACCATCAAACGTTC+TGG + chr1_1:75766280-75766299 None:intergenic 40.0%
! TGGTCTATCAAAATGGTGGA+TGG - chr1_1:75766290-75766309 Msa0044260:intron 40.0%
!! CTATCAAAATGGTGGATGGA+AGG - chr1_1:75766294-75766313 Msa0044260:intron 40.0%
!! AGGATGCTGTTGATTTGGTT+AGG - chr1_1:75766326-75766345 Msa0044260:intron 40.0%
TGATGTAAAGAAAGCAGCTG+TGG - chr1_1:75766357-75766376 Msa0044260:intron 40.0%
AAAAGTCCAGCACAAGATGA+TGG + chr1_1:75766399-75766418 None:intergenic 40.0%
GTTTGCAACAACCTATTGCT+TGG - chr1_1:75766449-75766468 Msa0044260:intron 40.0%
GTCTCATCAATCCAAGCAAT+AGG + chr1_1:75766463-75766482 None:intergenic 40.0%
ATTGCTTGGATTGATGAGAC+AGG - chr1_1:75766463-75766482 Msa0044260:intron 40.0%
TTGCTTGGATTGATGAGACA+GGG - chr1_1:75766464-75766483 Msa0044260:intron 40.0%
CGGAAGCAGCATAAATTTCA+GGG + chr1_1:75766501-75766520 None:intergenic 40.0%
TCGGAAGCAGCATAAATTTC+AGG + chr1_1:75766502-75766521 None:intergenic 40.0%
! ATTTATGCTGCTTCCGATGA+AGG - chr1_1:75766505-75766524 Msa0044260:intron 40.0%
! TTTATGCTGCTTCCGATGAA+GGG - chr1_1:75766506-75766525 Msa0044260:intron 40.0%
TCCTGATTGCAGAGATCATA+AGG + chr1_1:75766532-75766551 None:intergenic 40.0%
GGTCATGAATCTTTGTTCCA+AGG - chr1_1:75766562-75766581 Msa0044260:intron 40.0%
! AACATGGGAAATGGAAGTGT+TGG - chr1_1:75766748-75766767 Msa0044260:intron 40.0%
! CTTAAGGGAACTGGTAGTTT+TGG - chr1_1:75766865-75766884 Msa0044260:intron 40.0%
TTACCCCTTCTCAAGTACAT+CGG - chr1_1:75766909-75766928 Msa0044260:intron 40.0%
CATAGTAGGTAACTCTCCTT+TGG + chr1_1:75767028-75767047 None:intergenic 40.0%
AGCCCACAATTCATCATAGT+AGG + chr1_1:75767042-75767061 None:intergenic 40.0%
ACTATGATGAATTGTGGGCT+TGG - chr1_1:75767042-75767061 Msa0044260:intron 40.0%
TGCATGCATTTAGATGCAGA+TGG + chr1_1:75767078-75767097 None:intergenic 40.0%
TCTGCATCTAAATGCATGCA+TGG - chr1_1:75767078-75767097 Msa0044260:intron 40.0%
TCTAAATGCATGCATGGCAT+TGG - chr1_1:75767084-75767103 Msa0044260:intron 40.0%
AACACGACAAATTCAAGCCT+AGG + chr1_1:75767217-75767236 None:intergenic 40.0%
TTGCGATGTTGACGAAAATG+GGG - chr1_1:75767592-75767611 Msa0044260:intron 40.0%
! CGTCTTTTGCCGTGTAATAA+TGG - chr1_1:75767625-75767644 Msa0044260:intron 40.0%
! CCGTGTAATAATGGGGAATA+TGG - chr1_1:75767634-75767653 Msa0044260:intron 40.0%
!! GTACTTAATGGGTTGATCAG+AGG - chr1_1:75767935-75767954 Msa0044260:intron 40.0%
!! ATGATTCGGTTCACTCCATT+TGG - chr1_1:75760937-75760956 Msa0044260:three_prime_UTR 40.0%
GATGAAACCATCCATCCAAA+TGG + chr1_1:75760955-75760974 None:intergenic 40.0%
! GATGGTTTCATCTTCTGGTT+GGG - chr1_1:75760963-75760982 Msa0044260:three_prime_UTR 40.0%
! TCTGAACGTGGCAAGATTTT+AGG + chr1_1:75761182-75761201 None:intergenic 40.0%
! AGTAGGCACTGTAAGTTCTT+TGG - chr1_1:75761211-75761230 Msa0044260:intron 40.0%
! GCAGCAAAAAGCGTAGAAAA+AGG + chr1_1:75761514-75761533 None:intergenic 40.0%
TGAAGTGCAGATGGTACATA+TGG + chr1_1:75761576-75761595 None:intergenic 40.0%
ATATGTACCATCTGCACTTC+AGG - chr1_1:75761575-75761594 Msa0044260:intron 40.0%
TATGTACCATCTGCACTTCA+GGG - chr1_1:75761576-75761595 Msa0044260:intron 40.0%
GAAAAAGTTGAGGTCAGTTG+TGG - chr1_1:75761719-75761738 Msa0044260:intron 40.0%
! AAACAGCAAGTATTGCCTCA+AGG + chr1_1:75761849-75761868 None:intergenic 40.0%
AGAGTCCAGCGTTAAATAGA+GGG + chr1_1:75761903-75761922 None:intergenic 40.0%
TAGAGTCCAGCGTTAAATAG+AGG + chr1_1:75761904-75761923 None:intergenic 40.0%
! CCGCAAAGTTTGAAGTGTAA+AGG + chr1_1:75762063-75762082 None:intergenic 40.0%
!!! ATCGCATCCTGTTTTTGACA+TGG - chr1_1:75762171-75762190 Msa0044260:three_prime_UTR 40.0%
TTCGGTTCACTCCATTTGGA+TGG - chr1_1:75760941-75760960 Msa0044260:three_prime_UTR 45.0%
GTTCACTCCATTTGGATGGA+TGG - chr1_1:75760945-75760964 Msa0044260:three_prime_UTR 45.0%
GGATGGATGGTTTCATCTTC+TGG - chr1_1:75760958-75760977 Msa0044260:three_prime_UTR 45.0%
GGATGGTTTCATCTTCTGGT+TGG - chr1_1:75760962-75760981 Msa0044260:three_prime_UTR 45.0%
!! TTTGTGAGTGCCGTTCCTTT+TGG - chr1_1:75761046-75761065 Msa0044260:three_prime_UTR 45.0%
!!! ACCTTCTTTTGGGATGTGAG+TGG - chr1_1:75761117-75761136 Msa0044260:three_prime_UTR 45.0%
TCCACTCACATCCCAAAAGA+AGG + chr1_1:75761121-75761140 None:intergenic 45.0%
!!! GTGGCAAGATTTTAGGACCA+TGG + chr1_1:75761175-75761194 None:intergenic 45.0%
ATACCTCAGGGAATTCCAAC+TGG - chr1_1:75761457-75761476 Msa0044260:three_prime_UTR 45.0%
CATAAACAAGGTTCCTGCAG+AGG - chr1_1:75761537-75761556 Msa0044260:intron 45.0%
TACATACCCTGAAGTGCAGA+TGG + chr1_1:75761585-75761604 None:intergenic 45.0%
!!! CACGAGTCATCTTTTTTGCC+TGG + chr1_1:75761689-75761708 None:intergenic 45.0%
! ACCTGGTCTTCTTCAACACA+AGG - chr1_1:75761767-75761786 Msa0044260:intron 45.0%
ACCTTGTGTTGAAGAAGACC+AGG + chr1_1:75761771-75761790 None:intergenic 45.0%
CTGCGGTTATTTATGCCTTG+AGG - chr1_1:75761831-75761850 Msa0044260:intron 45.0%
TTTCCCCCTCTATTTAACGC+TGG - chr1_1:75761895-75761914 Msa0044260:intron 45.0%
AGTCCAGCGTTAAATAGAGG+GGG + chr1_1:75761901-75761920 None:intergenic 45.0%
GAGTCCAGCGTTAAATAGAG+GGG + chr1_1:75761902-75761921 None:intergenic 45.0%
TTAACGCTGGACTCTAGTGA+AGG - chr1_1:75761908-75761927 Msa0044260:intron 45.0%
TAACGCTGGACTCTAGTGAA+GGG - chr1_1:75761909-75761928 Msa0044260:intron 45.0%
TGAAGGGTTTATCTGCTGTG+TGG - chr1_1:75761925-75761944 Msa0044260:intron 45.0%
! TAATCTGTCACTTCACACCG+TGG - chr1_1:75762339-75762358 Msa0044260:three_prime_UTR 45.0%
GTGGTCATGACTTTGTTCCA+TGG - chr1_1:75762436-75762455 Msa0044260:three_prime_UTR 45.0%
TTCCACTGTAGAACACCAGT+GGG + chr1_1:75762509-75762528 None:intergenic 45.0%
TTTCCACTGTAGAACACCAG+TGG + chr1_1:75762510-75762529 None:intergenic 45.0%
! GCTAAAAAAGATGGTGGCCT+TGG + chr1_1:75762636-75762655 None:intergenic 45.0%
!! CAAGGTTTGTTAGAACGACG+AGG - chr1_1:75762680-75762699 Msa0044260:three_prime_UTR 45.0%
! ATGGACCCACTGTTAAGTTG+AGG + chr1_1:75762884-75762903 None:intergenic 45.0%
CACAAGTATCCGTGAGTATC+GGG - chr1_1:75763237-75763256 Msa0044260:three_prime_UTR 45.0%
GATACTCTCCGGATACGTAT+CGG - chr1_1:75763315-75763334 Msa0044260:three_prime_UTR 45.0%
GAAGCCCCGATACTTCAAAA+TGG + chr1_1:75763393-75763412 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1_1:75764748-75764767 None:intergenic 45.0%
CAAACCCTAGTTAGAAGAGG+CGG + chr1_1:75765139-75765158 None:intergenic 45.0%
!! TGGACGTTAACAGAAGTGCT+TGG - chr1_1:75765445-75765464 Msa0044260:intron 45.0%
AGCATGTTTCACCTGAAAGC+CGG - chr1_1:75765640-75765659 Msa0044260:intron 45.0%
CATGGAAGCAAACAACGGAA+AGG - chr1_1:75766021-75766040 Msa0044260:intron 45.0%
GAGTCATATTGGACGATCGT+TGG - chr1_1:75766219-75766238 Msa0044260:intron 45.0%
! TCCACAGGATGCTGTTGATT+TGG - chr1_1:75766321-75766340 Msa0044260:intron 45.0%
ACCAAATCAACAGCATCCTG+TGG + chr1_1:75766325-75766344 None:intergenic 45.0%
TGTAAAGAAAGCAGCTGTGG+AGG - chr1_1:75766360-75766379 Msa0044260:intron 45.0%
GCTGTGGAGGTAGAGTTAAA+TGG - chr1_1:75766373-75766392 Msa0044260:intron 45.0%
AAATGGCCATCATCTTGTGC+TGG - chr1_1:75766390-75766409 Msa0044260:intron 45.0%
GAGATCATAAGGCCCTTCAT+CGG + chr1_1:75766521-75766540 None:intergenic 45.0%
GCCTTATGATCTCTGCAATC+AGG - chr1_1:75766528-75766547 Msa0044260:intron 45.0%
TGCAATCAGGACAGCAGAAA+AGG - chr1_1:75766541-75766560 Msa0044260:intron 45.0%
! TGCACCGATGTACTTGAGAA+GGG + chr1_1:75766916-75766935 None:intergenic 45.0%
ATTCAACCTGGCAAAAGGAC+AGG + chr1_1:75767130-75767149 None:intergenic 45.0%
AATATGGAGCTTCTCCATCC+TGG - chr1_1:75767650-75767669 Msa0044260:intron 45.0%
CATAGTCACTACTACTGGGA+CGG + chr1_1:75767688-75767707 None:intergenic 45.0%
!! TAGTGACTATGATAGTGGGG+TGG - chr1_1:75767697-75767716 Msa0044260:intron 45.0%
AAGGTCTCTTCTGATGCTGA+AGG - chr1_1:75767803-75767822 Msa0044260:intron 45.0%
TTCGGTTCACTCCATTTGGA+TGG - chr1_1:75760941-75760960 Msa0044260:three_prime_UTR 45.0%
GTTCACTCCATTTGGATGGA+TGG - chr1_1:75760945-75760964 Msa0044260:three_prime_UTR 45.0%
GGATGGATGGTTTCATCTTC+TGG - chr1_1:75760958-75760977 Msa0044260:three_prime_UTR 45.0%
GGATGGTTTCATCTTCTGGT+TGG - chr1_1:75760962-75760981 Msa0044260:three_prime_UTR 45.0%
!! TTTGTGAGTGCCGTTCCTTT+TGG - chr1_1:75761046-75761065 Msa0044260:three_prime_UTR 45.0%
TCCACTCACATCCCAAAAGA+AGG + chr1_1:75761121-75761140 None:intergenic 45.0%
!!! GTGGCAAGATTTTAGGACCA+TGG + chr1_1:75761175-75761194 None:intergenic 45.0%
ATACCTCAGGGAATTCCAAC+TGG - chr1_1:75761457-75761476 Msa0044260:three_prime_UTR 45.0%
CATAAACAAGGTTCCTGCAG+AGG - chr1_1:75761537-75761556 Msa0044260:intron 45.0%
TACATACCCTGAAGTGCAGA+TGG + chr1_1:75761585-75761604 None:intergenic 45.0%
!!! CACGAGTCATCTTTTTTGCC+TGG + chr1_1:75761689-75761708 None:intergenic 45.0%
! ACCTGGTCTTCTTCAACACA+AGG - chr1_1:75761767-75761786 Msa0044260:intron 45.0%
ACCTTGTGTTGAAGAAGACC+AGG + chr1_1:75761771-75761790 None:intergenic 45.0%
CTGCGGTTATTTATGCCTTG+AGG - chr1_1:75761831-75761850 Msa0044260:intron 45.0%
TTTCCCCCTCTATTTAACGC+TGG - chr1_1:75761895-75761914 Msa0044260:intron 45.0%
AGTCCAGCGTTAAATAGAGG+GGG + chr1_1:75761901-75761920 None:intergenic 45.0%
GAGTCCAGCGTTAAATAGAG+GGG + chr1_1:75761902-75761921 None:intergenic 45.0%
TTAACGCTGGACTCTAGTGA+AGG - chr1_1:75761908-75761927 Msa0044260:intron 45.0%
TAACGCTGGACTCTAGTGAA+GGG - chr1_1:75761909-75761928 Msa0044260:intron 45.0%
TGAAGGGTTTATCTGCTGTG+TGG - chr1_1:75761925-75761944 Msa0044260:intron 45.0%
!! ATATTATAATAAGAAAAAAA+TGG + chr1_1:75760883-75760902 None:intergenic 5.0%
!!! TTTTTTTCTTATTATAATAT+TGG - chr1_1:75760883-75760902 Msa0044260:three_prime_UTR 5.0%
!! TTTATTATTATTACTATTAA+TGG - chr1_1:75762974-75762993 Msa0044260:three_prime_UTR 5.0%
!! TATATTATTATGTAATTATT+TGG + chr1_1:75763936-75763955 None:intergenic 5.0%
!!! ATTACATAATAATATATTTT+AGG - chr1_1:75763940-75763959 Msa0044260:three_prime_UTR 5.0%
!! ATATTATAATAAGAAAAAAA+TGG + chr1_1:75760883-75760902 None:intergenic 5.0%
!!! TTTTTTTCTTATTATAATAT+TGG - chr1_1:75760883-75760902 Msa0044260:three_prime_UTR 5.0%
GGGGTTAATTCAGCTAGCCA+TGG - chr1_1:75761155-75761174 Msa0044260:three_prime_UTR 50.0%
ACTCTCGAAGACTCTGAACG+TGG + chr1_1:75761194-75761213 None:intergenic 50.0%
CGTTCAGAGTCTTCGAGAGT+AGG - chr1_1:75761194-75761213 Msa0044260:intron 50.0%
GAACCAGTTGGAATTCCCTG+AGG + chr1_1:75761463-75761482 None:intergenic 50.0%
CTGAAGCTTCAACATCCCCT+CGG - chr1_1:75761485-75761504 Msa0044260:intron 50.0%
CGTAGAAAAAGGCAACCGAG+GGG + chr1_1:75761503-75761522 None:intergenic 50.0%
GCGTAGAAAAAGGCAACCGA+GGG + chr1_1:75761504-75761523 None:intergenic 50.0%
AGCGTAGAAAAAGGCAACCG+AGG + chr1_1:75761505-75761524 None:intergenic 50.0%
CTCTTGCGAGCTACATTACC+TGG - chr1_1:75761750-75761769 Msa0044260:intron 50.0%
TTCTGCAAGGTCTTCTGCTG+CGG - chr1_1:75761814-75761833 Msa0044260:intron 50.0%
! CACTTCACACCGTGGATTGT+TGG - chr1_1:75762347-75762366 Msa0044260:three_prime_UTR 50.0%
TCCACTGTAGAACACCAGTG+GGG + chr1_1:75762508-75762527 None:intergenic 50.0%
CTCTAGCAACTATCACGCCA+AGG - chr1_1:75762616-75762635 Msa0044260:three_prime_UTR 50.0%
! CGGGACGTATCGGAAAGTAT+CGG - chr1_1:75763256-75763275 Msa0044260:three_prime_UTR 50.0%
TATCGAGCAGATATCGGTGC+AGG - chr1_1:75763342-75763361 Msa0044260:three_prime_UTR 50.0%
ATATCGGTGCAGGATACGCA+GGG - chr1_1:75763352-75763371 Msa0044260:three_prime_UTR 50.0%
CGGGGCTTCACAGATAATGA+AGG - chr1_1:75763404-75763423 Msa0044260:three_prime_UTR 50.0%
GAGACAAAGAGGACGACTGA+AGG + chr1_1:75765114-75765133 None:intergenic 50.0%
TCCACCGCCTCTTCTAACTA+GGG - chr1_1:75765132-75765151 Msa0044260:intron 50.0%
AAACTGTACCAGTGAGGGTG+TGG + chr1_1:75765906-75765925 None:intergenic 50.0%
GCAGCAACCAAACAGAACTC+TGG + chr1_1:75765948-75765967 None:intergenic 50.0%
!! ACAACGGAAAGGCGTCTAAC+AGG - chr1_1:75766032-75766051 Msa0044260:intron 50.0%
TGGATGGAAGGACTTTCCAC+AGG - chr1_1:75766306-75766325 Msa0044260:intron 50.0%
TGGAGTAGGTGCATCCAAGT+TGG - chr1_1:75766624-75766643 Msa0044260:intron 50.0%
GGAGTAGGTGCATCCAAGTT+GGG - chr1_1:75766625-75766644 Msa0044260:intron 50.0%
GAGTAGGTGCATCCAAGTTG+GGG - chr1_1:75766626-75766645 Msa0044260:intron 50.0%
! AGTAGGTGCATCCAAGTTGG+GGG - chr1_1:75766627-75766646 Msa0044260:intron 50.0%
! TCCAAGTTGGGGGAGTGTAT+TGG - chr1_1:75766637-75766656 Msa0044260:intron 50.0%
! CCAAGTTGGGGGAGTGTATT+GGG - chr1_1:75766638-75766657 Msa0044260:intron 50.0%
! CAAGTTGGGGGAGTGTATTG+GGG - chr1_1:75766639-75766658 Msa0044260:intron 50.0%
! GCACCGATGTACTTGAGAAG+GGG + chr1_1:75766915-75766934 None:intergenic 50.0%
! CTGCACCGATGTACTTGAGA+AGG + chr1_1:75766917-75766936 None:intergenic 50.0%
! AGCATCCCCCCGACAATTTT+TGG + chr1_1:75766977-75766996 None:intergenic 50.0%
!! GCTTGGCTTGCTTCTTCCAA+AGG - chr1_1:75767009-75767028 Msa0044260:intron 50.0%
!!! GCCTTCTTTTGGGATGTGAG+TGG - chr1_1:75768153-75768172 Msa0044260:intron 50.0%
GGGGTTAATTCAGCTAGCCA+TGG - chr1_1:75761155-75761174 Msa0044260:three_prime_UTR 50.0%
ACTCTCGAAGACTCTGAACG+TGG + chr1_1:75761194-75761213 None:intergenic 50.0%
CGTTCAGAGTCTTCGAGAGT+AGG - chr1_1:75761194-75761213 Msa0044260:intron 50.0%
GAACCAGTTGGAATTCCCTG+AGG + chr1_1:75761463-75761482 None:intergenic 50.0%
CTGAAGCTTCAACATCCCCT+CGG - chr1_1:75761485-75761504 Msa0044260:intron 50.0%
CGTAGAAAAAGGCAACCGAG+GGG + chr1_1:75761503-75761522 None:intergenic 50.0%
GCGTAGAAAAAGGCAACCGA+GGG + chr1_1:75761504-75761523 None:intergenic 50.0%
AGCGTAGAAAAAGGCAACCG+AGG + chr1_1:75761505-75761524 None:intergenic 50.0%
CTCTTGCGAGCTACATTACC+TGG - chr1_1:75761750-75761769 Msa0044260:intron 50.0%
TTCTGCAAGGTCTTCTGCTG+CGG - chr1_1:75761814-75761833 Msa0044260:intron 50.0%
GAAGCTTCAGGCGAACCAGT+TGG + chr1_1:75761475-75761494 None:intergenic 55.0%
CGAGGGGATGTTGAAGCTTC+AGG + chr1_1:75761487-75761506 None:intergenic 55.0%
GCTTTGCTGGATGTCCCTCT+CGG - chr1_1:75761615-75761634 Msa0044260:three_prime_UTR 55.0%
AAACCCTGTGTGTACCCCAC+TGG - chr1_1:75762491-75762510 Msa0044260:three_prime_UTR 55.0%
ACACCAGTGGGGTACACACA+GGG + chr1_1:75762497-75762516 None:intergenic 55.0%
AACACCAGTGGGGTACACAC+AGG + chr1_1:75762498-75762517 None:intergenic 55.0%
ACCCCACTGGTGTTCTACAG+TGG - chr1_1:75762504-75762523 Msa0044260:three_prime_UTR 55.0%
CCGATACGTCCCGATACTCA+CGG + chr1_1:75763249-75763268 None:intergenic 55.0%
!! CCGTGAGTATCGGGACGTAT+CGG - chr1_1:75763246-75763265 Msa0044260:three_prime_UTR 55.0%
GATATCGGTGCAGGATACGC+AGG - chr1_1:75763351-75763370 Msa0044260:three_prime_UTR 55.0%
TATCGGTGCAGGATACGCAG+GGG - chr1_1:75763353-75763372 Msa0044260:three_prime_UTR 55.0%
AAGAGGCGGTGGAGACAAAG+AGG + chr1_1:75765125-75765144 None:intergenic 55.0%
CTCCACCGCCTCTTCTAACT+AGG - chr1_1:75765131-75765150 Msa0044260:intron 55.0%
ACCCTAGTTAGAAGAGGCGG+TGG + chr1_1:75765136-75765155 None:intergenic 55.0%
CGGAAGCCCAGAACGTTTGA+TGG - chr1_1:75766270-75766289 Msa0044260:intron 55.0%
CCCAATACACTCCCCCAACT+TGG + chr1_1:75766641-75766660 None:intergenic 55.0%
TACATCGGTGCAGTCGCGAT+TGG - chr1_1:75766924-75766943 Msa0044260:intron 55.0%
! CTGCTACCTGTCCTTTTGCC+AGG - chr1_1:75767121-75767140 Msa0044260:intron 55.0%
GGTACTGTCTAGTGCCAGGA+TGG + chr1_1:75767667-75767686 None:intergenic 55.0%
GAAGCTTCAGGCGAACCAGT+TGG + chr1_1:75761475-75761494 None:intergenic 55.0%
CGAGGGGATGTTGAAGCTTC+AGG + chr1_1:75761487-75761506 None:intergenic 55.0%
GCTTTGCTGGATGTCCCTCT+CGG - chr1_1:75761615-75761634 Msa0044260:three_prime_UTR 55.0%
GTCATGGTCCACACCCTCAC+TGG - chr1_1:75765895-75765914 Msa0044260:intron 60.0%
GGACGGTACTGTCTAGTGCC+AGG + chr1_1:75767671-75767690 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75760859 75769370 75760859 ID=Msa0044260;Name=Msa0044260
chr1_1 mRNA 75760859 75769370 75760859 ID=Msa0044260-mRNA-1;Parent=Msa0044260;Name=Msa0044260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=242|0.6|0.83|1|0.6|0.66|6|2789|119
chr1_1 exon 75760859 75761210 75760859 ID=Msa0044260-mRNA-1:exon:25652;Parent=Msa0044260-mRNA-1
chr1_1 exon 75761405 75761503 75761405 ID=Msa0044260-mRNA-1:exon:25651;Parent=Msa0044260-mRNA-1
chr1_1 exon 75761596 75761727 75761596 ID=Msa0044260-mRNA-1:exon:25650;Parent=Msa0044260-mRNA-1
chr1_1 exon 75761973 75764355 75761973 ID=Msa0044260-mRNA-1:exon:25649;Parent=Msa0044260-mRNA-1
chr1_1 exon 75765076 75765138 75765076 ID=Msa0044260-mRNA-1:exon:25648;Parent=Msa0044260-mRNA-1
chr1_1 exon 75769009 75769370 75769009 ID=Msa0044260-mRNA-1:exon:25647;Parent=Msa0044260-mRNA-1
chr1_1 five_prime_UTR 75769129 75769370 75769129 ID=Msa0044260-mRNA-1:five_prime_utr;Parent=Msa0044260-mRNA-1
chr1_1 CDS 75769009 75769128 75769009 ID=Msa0044260-mRNA-1:cds;Parent=Msa0044260-mRNA-1
chr1_1 CDS 75765076 75765138 75765076 ID=Msa0044260-mRNA-1:cds;Parent=Msa0044260-mRNA-1
chr1_1 CDS 75764179 75764355 75764179 ID=Msa0044260-mRNA-1:cds;Parent=Msa0044260-mRNA-1
chr1_1 three_prime_UTR 75761973 75764178 75761973 ID=Msa0044260-mRNA-1:three_prime_utr;Parent=Msa0044260-mRNA-1
chr1_1 three_prime_UTR 75761596 75761727 75761596 ID=Msa0044260-mRNA-1:three_prime_utr;Parent=Msa0044260-mRNA-1
chr1_1 three_prime_UTR 75761405 75761503 75761405 ID=Msa0044260-mRNA-1:three_prime_utr;Parent=Msa0044260-mRNA-1
chr1_1 three_prime_UTR 75760859 75761210 75760859 ID=Msa0044260-mRNA-1:three_prime_utr;Parent=Msa0044260-mRNA-1
Gene Sequence

>Msa0044260

ATGCGTTTTTTTACAGACCTTCTTTTGGGATGTGAGTGGAAGAATAATATTTTTGGGGTTAATTCAGCTAGCCATGGTCCTAAAATCTTGCCACGTTCAGAGTCTTCGAGAGTAGGCACTGAGTATTTTGACTGCTTTGTCCTTCAGTCGTCCTCTTTGTCTCCACCGCCTCTTCTAACTAGGGGTGTTCCAAACATTCTTGATGTCATGGTCCACACCCTCACTGGTACAGTTTATTTGAAACTTCTAAAGGACCAGAGTTCTGTTTGGTTGCTGCATTCTGAGCTTTTATATTTGAACGTGTTCAAAGATATTGTTCCAGTAGATAAACATGGAAGCAAACAACGGAAAGGCGTCTAA

Protein sequence

>Msa0044260

MRFFTDLLLGCEWKNNIFGVNSASHGPKILPRSESSRVGTEYFDCFVLQSSSLSPPPLLTRGVPNILDVMVHTLTGTVYLKLLKDQSSVWLLHSELLYLNVFKDIVPVDKHGSKQRKGV*