AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1246510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246510 MtrunA17_Chr2g0318671 72.316 177 46 1 1 177 629 802 1.66e-88 275
Msa1246510 MtrunA17_Chr4g0039491 63.235 68 25 0 112 179 64 131 5.31e-25 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246510 AT3G20630.1 64.407 177 58 1 1 177 625 796 2.97e-74 238

Find 61 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACAGGATATCGACTTAT+TGG 0.246392 8_2:-37867791 Msa1246510:intron
AATTGCTACCTTTGTCTTTG+TGG 0.267191 8_2:-37867504 Msa1246510:three_prime_UTR
GAACCATGGCCTTCAGAAAT+AGG 0.283309 8_2:+37868722 None:intergenic
TGTCTTTGTGGCATGTTAAA+TGG 0.311341 8_2:-37867492 Msa1246510:three_prime_UTR
TGTTAATCCTCCCAAGGAAA+TGG 0.328991 8_2:-37867663 Msa1246510:CDS
TAGAGAGACAATTTCTTCAT+TGG 0.337556 8_2:+37868967 None:intergenic
TGTCTCTCTACTTGTTTCCA+TGG 0.356143 8_2:-37868954 Msa1246510:exon
CAAAGACAAAGGTAGCAATT+TGG 0.372258 8_2:+37867507 None:intergenic
TTGAAGATTATTTAGTCTCT+TGG 0.377062 8_2:-37869046 Msa1246510:five_prime_UTR
CAGGCCAGTGTCAACGGAAA+TGG 0.400338 8_2:+37868119 None:intergenic
GTCTCTCTACTTGTTTCCAT+GGG 0.420502 8_2:-37868953 Msa1246510:exon
TGAGGCATCAGTCTCCAGTA+TGG 0.422118 8_2:-37868166 Msa1246510:CDS
TCACATGTAATGAAGCATTC+TGG 0.425574 8_2:-37867433 Msa1246510:three_prime_UTR
CCTAGACATGTAATTTCTAC+AGG 0.438756 8_2:+37867390 None:intergenic
ACAAAGTTAAAGTTTGACTT+AGG 0.440683 8_2:-37867597 Msa1246510:three_prime_UTR
GTTGATCAGCTAATTACGTT+CGG 0.445072 8_2:-37868668 Msa1246510:CDS
AATACGACTCAGGCCATTAG+AGG 0.446430 8_2:+37867468 None:intergenic
GTTAATCCTCCCAAGGAAAT+GGG 0.449545 8_2:-37867662 Msa1246510:CDS
ATACAGATAACCCATTTCCT+TGG 0.463944 8_2:+37867652 None:intergenic
TACAGATAACCCATTTCCTT+GGG 0.464634 8_2:+37867653 None:intergenic
AACTTACTCCCTCCTCCATC+AGG 0.464709 8_2:+37868096 None:intergenic
TTACATTGATTAGCTGAAAG+AGG 0.473189 8_2:+37869093 None:intergenic
ACTGGCCTGCCTGATGGAGG+AGG 0.483489 8_2:-37868105 Msa1246510:CDS
GACTGGATGCGGCATTGACT+TGG 0.484260 8_2:-37868880 Msa1246510:CDS
CCTGTAGAAATTACATGTCT+AGG 0.488177 8_2:-37867390 Msa1246510:three_prime_UTR
ACATTGAGAAAGCGACAGAT+TGG 0.495965 8_2:-37868203 Msa1246510:CDS
ATTGATTAGCTGAAAGAGGC+AGG 0.496046 8_2:+37869097 None:intergenic
ATTGACATTCCTATTTCTGA+AGG 0.497250 8_2:-37868731 Msa1246510:CDS
GTTGACACTGGCCTGCCTGA+TGG 0.498635 8_2:-37868111 Msa1246510:CDS
ATCAAATGTTGGACTGGATG+CGG 0.504815 8_2:-37868891 Msa1246510:CDS
GCTATAAATACATCAAATGT+TGG 0.506211 8_2:-37868902 Msa1246510:CDS
CAGTTTCACAAGGATGATCC+AGG 0.510435 8_2:-37868854 Msa1246510:intron
AAATACATCAAATGTTGGAC+TGG 0.510805 8_2:-37868897 Msa1246510:CDS
CATGTTAAATGGTCCTCTAA+TGG 0.515926 8_2:-37867481 Msa1246510:three_prime_UTR
TTTCAATGACAACAAGGTTG+GGG 0.523089 8_2:-37867690 Msa1246510:CDS
TGATGTGACAGTATCCATAC+TGG 0.528032 8_2:+37868152 None:intergenic
TACTCCCTCCTCCATCAGGC+AGG 0.532645 8_2:+37868100 None:intergenic
ATTCCTATTTCTGAAGGCCA+TGG 0.532648 8_2:-37868725 Msa1246510:CDS
GACACTGGCCTGCCTGATGG+AGG 0.543208 8_2:-37868108 Msa1246510:CDS
GCATCCATTTCCGTTGACAC+TGG 0.549940 8_2:-37868123 Msa1246510:CDS
ATCAGGCAGGCCAGTGTCAA+CGG 0.551526 8_2:+37868113 None:intergenic
AGATAACCCATTTCCTTGGG+AGG 0.572510 8_2:+37867656 None:intergenic
GGCTTCTGTTAATCCTCCCA+AGG 0.578435 8_2:-37867669 Msa1246510:CDS
CTGGCCTGCCTGATGGAGGA+GGG 0.578722 8_2:-37868104 Msa1246510:CDS
ACAATTTCTTCATTGGCCGA+AGG 0.578908 8_2:+37868974 None:intergenic
GAATATTCTCAACTGTGAAG+TGG 0.586717 8_2:-37867573 Msa1246510:three_prime_UTR
TTATAGCAGCTTTCTGACAA+CGG 0.586766 8_2:+37868918 None:intergenic
TGAGTCTTCCTCATCTGGTG+CGG 0.588907 8_2:+37869003 None:intergenic
ATACTGGAGACTGATGCCTC+AGG 0.590591 8_2:+37868168 None:intergenic
GTTATCTGTATTTCTTCGAG+AGG 0.598528 8_2:-37867640 Msa1246510:CDS
GTGACTTGCCGCACCAGATG+AGG 0.608143 8_2:-37869011 Msa1246510:five_prime_UTR
GACTTGGTTACAGTTTCACA+AGG 0.617561 8_2:-37868864 Msa1246510:CDS
ACGGAGATGATCAAAGCCCA+TGG 0.619505 8_2:+37868937 None:intergenic
ATTGGAGTTGTTAGCCACAG+TGG 0.628087 8_2:-37867773 Msa1246510:CDS
TTGTCAAAGCTTCAGAACCA+TGG 0.631887 8_2:+37868708 None:intergenic
TCTAGGAATTCAAATCACAA+TGG 0.642844 8_2:-37867373 Msa1246510:three_prime_UTR
TTGGATATTTAGCAATCCTG+AGG 0.649412 8_2:-37868184 Msa1246510:CDS
TTAACATGCCACAAAGACAA+AGG 0.654262 8_2:+37867496 None:intergenic
AGTGGAACCTCTACGCTGTG+TGG 0.697486 8_2:-37867755 Msa1246510:CDS
GTAGTGACCACACAGCGTAG+AGG 0.713372 8_2:+37867748 None:intergenic
ACAGCGTAGAGGTTCCACTG+TGG 0.816807 8_2:+37867759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATAAAATAGAAGTATA+TGG - chr8_2:37868003-37868022 Msa1246510:intron 10.0%
!!! ATTTATAAAATAGAAGTATA+TGG - chr8_2:37868003-37868022 Msa1246510:intron 10.0%
!!! TATTTTCTTTTTATTCAATC+TGG + chr8_2:37868528-37868547 None:intergenic 15.0%
!!! ATTATATTCTTTTTTAACAC+AGG - chr8_2:37868652-37868671 Msa1246510:CDS 15.0%
!!! TATTTTCTTTTTATTCAATC+TGG + chr8_2:37868528-37868547 None:intergenic 15.0%
!!! ATTATATTCTTTTTTAACAC+AGG - chr8_2:37868652-37868671 Msa1246510:CDS 15.0%
!! GATATAAAATCATATCTTCT+TGG - chr8_2:37867897-37867916 Msa1246510:intron 20.0%
!! ATTAGTAGAAATAACATTTC+TGG + chr8_2:37867949-37867968 None:intergenic 20.0%
!!! TTTTACATTGGAAGAAAATA+AGG - chr8_2:37868067-37868086 Msa1246510:intron 20.0%
!! TTTACATTGGAAGAAAATAA+GGG - chr8_2:37868068-37868087 Msa1246510:intron 20.0%
!! TTGATTTACAACTTTGATTA+AGG + chr8_2:37868430-37868449 None:intergenic 20.0%
!! GATATAAAATCATATCTTCT+TGG - chr8_2:37867897-37867916 Msa1246510:intron 20.0%
!! ATTAGTAGAAATAACATTTC+TGG + chr8_2:37867949-37867968 None:intergenic 20.0%
!!! TTTTACATTGGAAGAAAATA+AGG - chr8_2:37868067-37868086 Msa1246510:intron 20.0%
!! TTTACATTGGAAGAAAATAA+GGG - chr8_2:37868068-37868087 Msa1246510:intron 20.0%
!! TTGATTTACAACTTTGATTA+AGG + chr8_2:37868430-37868449 None:intergenic 20.0%
! TTGAAGATTATTTAGTCTCT+TGG - chr8_2:37867412-37867431 Msa1246510:three_prime_UTR 25.0%
! GCTATAAATACATCAAATGT+TGG - chr8_2:37867556-37867575 Msa1246510:three_prime_UTR 25.0%
! AAATCATATCTTCTTGGAAA+TGG - chr8_2:37867903-37867922 Msa1246510:intron 25.0%
!!! TTTCTGGTGATTCTATTTTT+TGG + chr8_2:37867933-37867952 None:intergenic 25.0%
!!! GTTATTTCTACTAATGTGTT+TGG - chr8_2:37867954-37867973 Msa1246510:intron 25.0%
!! AGTTGGTTAAGTTTTTACAT+TGG - chr8_2:37868055-37868074 Msa1246510:intron 25.0%
! TTACATTGGAAGAAAATAAG+GGG - chr8_2:37868069-37868088 Msa1246510:intron 25.0%
! AAATCATTGGTGAAATTCTT+GGG - chr8_2:37868092-37868111 Msa1246510:intron 25.0%
! TAAAAAATTTAACGAAGCAC+AGG - chr8_2:37868141-37868160 Msa1246510:CDS 25.0%
!! ACAAAGTTAAAGTTTGACTT+AGG - chr8_2:37868861-37868880 Msa1246510:CDS 25.0%
! TTAGAAAAATAATACGACTC+AGG + chr8_2:37869003-37869022 None:intergenic 25.0%
! TTGAAGATTATTTAGTCTCT+TGG - chr8_2:37867412-37867431 Msa1246510:three_prime_UTR 25.0%
! GCTATAAATACATCAAATGT+TGG - chr8_2:37867556-37867575 Msa1246510:three_prime_UTR 25.0%
! AAATCATATCTTCTTGGAAA+TGG - chr8_2:37867903-37867922 Msa1246510:intron 25.0%
!!! TTTCTGGTGATTCTATTTTT+TGG + chr8_2:37867933-37867952 None:intergenic 25.0%
!!! GTTATTTCTACTAATGTGTT+TGG - chr8_2:37867954-37867973 Msa1246510:intron 25.0%
!! AGTTGGTTAAGTTTTTACAT+TGG - chr8_2:37868055-37868074 Msa1246510:intron 25.0%
! TTACATTGGAAGAAAATAAG+GGG - chr8_2:37868069-37868088 Msa1246510:intron 25.0%
! AAATCATTGGTGAAATTCTT+GGG - chr8_2:37868092-37868111 Msa1246510:intron 25.0%
! TAAAAAATTTAACGAAGCAC+AGG - chr8_2:37868141-37868160 Msa1246510:CDS 25.0%
!! ACAAAGTTAAAGTTTGACTT+AGG - chr8_2:37868861-37868880 Msa1246510:CDS 25.0%
! TTAGAAAAATAATACGACTC+AGG + chr8_2:37869003-37869022 None:intergenic 25.0%
! TTACATTGATTAGCTGAAAG+AGG + chr8_2:37867368-37867387 None:intergenic 30.0%
TAGAGAGACAATTTCTTCAT+TGG + chr8_2:37867494-37867513 None:intergenic 30.0%
AAATACATCAAATGTTGGAC+TGG - chr8_2:37867561-37867580 Msa1246510:three_prime_UTR 30.0%
!! GTAAAGCAAACTTGTTAGAA+AGG - chr8_2:37867653-37867672 Msa1246510:CDS 30.0%
!! ATTGACATTCCTATTTCTGA+AGG - chr8_2:37867727-37867746 Msa1246510:CDS 30.0%
! TTAGCTGATCAACTTTTGAT+TGG + chr8_2:37867783-37867802 None:intergenic 30.0%
AGAAAATAAGGGGAAATCAT+TGG - chr8_2:37868079-37868098 Msa1246510:intron 30.0%
GAAATCATTGGTGAAATTCT+TGG - chr8_2:37868091-37868110 Msa1246510:intron 30.0%
!! AATGTTTTTGATGGTCTAAG+TGG - chr8_2:37868208-37868227 Msa1246510:CDS 30.0%
AGTGGTAATTATTGTTCTGT+AGG - chr8_2:37868226-37868245 Msa1246510:intron 30.0%
GTGGTAATTATTGTTCTGTA+GGG - chr8_2:37868227-37868246 Msa1246510:intron 30.0%
AATCTGGCAAAGTTAAAATG+GGG + chr8_2:37868512-37868531 None:intergenic 30.0%
CAATCTGGCAAAGTTAAAAT+GGG + chr8_2:37868513-37868532 None:intergenic 30.0%
TCAATCTGGCAAAGTTAAAA+TGG + chr8_2:37868514-37868533 None:intergenic 30.0%
! ATGTTTTCAAAGATGGTAGA+TGG - chr8_2:37868740-37868759 Msa1246510:intron 30.0%
! TGTTTTCAAAGATGGTAGAT+GGG - chr8_2:37868741-37868760 Msa1246510:intron 30.0%
! ATTTTCAATGACAACAAGGT+TGG - chr8_2:37868766-37868785 Msa1246510:intron 30.0%
! TTTTCAATGACAACAAGGTT+GGG - chr8_2:37868767-37868786 Msa1246510:intron 30.0%
!!! TGGAAGATGATGTTTTAGAA+GGG - chr8_2:37868905-37868924 Msa1246510:CDS 30.0%
TCTAGGAATTCAAATCACAA+TGG - chr8_2:37869085-37869104 Msa1246510:five_prime_UTR 30.0%
! TTACATTGATTAGCTGAAAG+AGG + chr8_2:37867368-37867387 None:intergenic 30.0%
TAGAGAGACAATTTCTTCAT+TGG + chr8_2:37867494-37867513 None:intergenic 30.0%
AAATACATCAAATGTTGGAC+TGG - chr8_2:37867561-37867580 Msa1246510:three_prime_UTR 30.0%
!! GTAAAGCAAACTTGTTAGAA+AGG - chr8_2:37867653-37867672 Msa1246510:CDS 30.0%
!! ATTGACATTCCTATTTCTGA+AGG - chr8_2:37867727-37867746 Msa1246510:CDS 30.0%
! TTAGCTGATCAACTTTTGAT+TGG + chr8_2:37867783-37867802 None:intergenic 30.0%
AGAAAATAAGGGGAAATCAT+TGG - chr8_2:37868079-37868098 Msa1246510:intron 30.0%
GAAATCATTGGTGAAATTCT+TGG - chr8_2:37868091-37868110 Msa1246510:intron 30.0%
!! AATGTTTTTGATGGTCTAAG+TGG - chr8_2:37868208-37868227 Msa1246510:CDS 30.0%
AGTGGTAATTATTGTTCTGT+AGG - chr8_2:37868226-37868245 Msa1246510:intron 30.0%
GTGGTAATTATTGTTCTGTA+GGG - chr8_2:37868227-37868246 Msa1246510:intron 30.0%
AATCTGGCAAAGTTAAAATG+GGG + chr8_2:37868512-37868531 None:intergenic 30.0%
CAATCTGGCAAAGTTAAAAT+GGG + chr8_2:37868513-37868532 None:intergenic 30.0%
TCAATCTGGCAAAGTTAAAA+TGG + chr8_2:37868514-37868533 None:intergenic 30.0%
! ATGTTTTCAAAGATGGTAGA+TGG - chr8_2:37868740-37868759 Msa1246510:intron 30.0%
! TGTTTTCAAAGATGGTAGAT+GGG - chr8_2:37868741-37868760 Msa1246510:intron 30.0%
! ATTTTCAATGACAACAAGGT+TGG - chr8_2:37868766-37868785 Msa1246510:intron 30.0%
! TTTTCAATGACAACAAGGTT+GGG - chr8_2:37868767-37868786 Msa1246510:intron 30.0%
!!! TGGAAGATGATGTTTTAGAA+GGG - chr8_2:37868905-37868924 Msa1246510:CDS 30.0%
TCTAGGAATTCAAATCACAA+TGG - chr8_2:37869085-37869104 Msa1246510:five_prime_UTR 30.0%
TTATAGCAGCTTTCTGACAA+CGG + chr8_2:37867543-37867562 None:intergenic 35.0%
! ATGATCCAGGTATCTGAAAT+AGG - chr8_2:37867617-37867636 Msa1246510:exon 35.0%
! TGATCCAGGTATCTGAAATA+GGG - chr8_2:37867618-37867637 Msa1246510:exon 35.0%
GTTGATCAGCTAATTACGTT+CGG - chr8_2:37867790-37867809 Msa1246510:intron 35.0%
TACTAATGTGTTTGGTCTGT+AGG - chr8_2:37867962-37867981 Msa1246510:intron 35.0%
GAAGTATATGGTGTGAAACT+AGG - chr8_2:37868015-37868034 Msa1246510:intron 35.0%
TATATGGTGTGAAACTAGGT+GGG - chr8_2:37868019-37868038 Msa1246510:intron 35.0%
ACGACTTATTCAAGATAGTG+AGG + chr8_2:37868183-37868202 None:intergenic 35.0%
GTAATTATTGTTCTGTAGGG+AGG - chr8_2:37868230-37868249 Msa1246510:intron 35.0%
TTGGATATTTAGCAATCCTG+AGG - chr8_2:37868274-37868293 Msa1246510:intron 35.0%
!!! GTAAGTTGCTTTTATTCTCC+TGG - chr8_2:37868378-37868397 Msa1246510:intron 35.0%
GATCACTATAGTTAACAGCA+AGG + chr8_2:37868408-37868427 None:intergenic 35.0%
ATCTGGCAAAGTTAAAATGG+GGG + chr8_2:37868511-37868530 None:intergenic 35.0%
!! AACACAGGATATCGACTTAT+TGG - chr8_2:37868667-37868686 Msa1246510:CDS 35.0%
! GTTGCTCATGTTTTCAAAGA+TGG - chr8_2:37868733-37868752 Msa1246510:CDS 35.0%
! GGCAATTTTCAATGACAACA+AGG - chr8_2:37868762-37868781 Msa1246510:intron 35.0%
TTTCAATGACAACAAGGTTG+GGG - chr8_2:37868768-37868787 Msa1246510:intron 35.0%
TACAGATAACCCATTTCCTT+GGG + chr8_2:37868808-37868827 None:intergenic 35.0%
ATACAGATAACCCATTTCCT+TGG + chr8_2:37868809-37868828 None:intergenic 35.0%
GTTATCTGTATTTCTTCGAG+AGG - chr8_2:37868818-37868837 Msa1246510:intron 35.0%
GAATATTCTCAACTGTGAAG+TGG - chr8_2:37868885-37868904 Msa1246510:CDS 35.0%
!! GTGGAAGATGATGTTTTAGA+AGG - chr8_2:37868904-37868923 Msa1246510:CDS 35.0%
CAAAGACAAAGGTAGCAATT+TGG + chr8_2:37868954-37868973 None:intergenic 35.0%
AATTGCTACCTTTGTCTTTG+TGG - chr8_2:37868954-37868973 Msa1246510:exon 35.0%
TTAACATGCCACAAAGACAA+AGG + chr8_2:37868965-37868984 None:intergenic 35.0%
TGTCTTTGTGGCATGTTAAA+TGG - chr8_2:37868966-37868985 Msa1246510:five_prime_UTR 35.0%
CATGTTAAATGGTCCTCTAA+TGG - chr8_2:37868977-37868996 Msa1246510:five_prime_UTR 35.0%
! TCACATGTAATGAAGCATTC+TGG - chr8_2:37869025-37869044 Msa1246510:five_prime_UTR 35.0%
CCTAGACATGTAATTTCTAC+AGG + chr8_2:37869071-37869090 None:intergenic 35.0%
CCTGTAGAAATTACATGTCT+AGG - chr8_2:37869068-37869087 Msa1246510:five_prime_UTR 35.0%
TTATAGCAGCTTTCTGACAA+CGG + chr8_2:37867543-37867562 None:intergenic 35.0%
! ATGATCCAGGTATCTGAAAT+AGG - chr8_2:37867617-37867636 Msa1246510:exon 35.0%
! TGATCCAGGTATCTGAAATA+GGG - chr8_2:37867618-37867637 Msa1246510:exon 35.0%
GTTGATCAGCTAATTACGTT+CGG - chr8_2:37867790-37867809 Msa1246510:intron 35.0%
TACTAATGTGTTTGGTCTGT+AGG - chr8_2:37867962-37867981 Msa1246510:intron 35.0%
GAAGTATATGGTGTGAAACT+AGG - chr8_2:37868015-37868034 Msa1246510:intron 35.0%
TATATGGTGTGAAACTAGGT+GGG - chr8_2:37868019-37868038 Msa1246510:intron 35.0%
ACGACTTATTCAAGATAGTG+AGG + chr8_2:37868183-37868202 None:intergenic 35.0%
GTAATTATTGTTCTGTAGGG+AGG - chr8_2:37868230-37868249 Msa1246510:intron 35.0%
TTGGATATTTAGCAATCCTG+AGG - chr8_2:37868274-37868293 Msa1246510:intron 35.0%
!!! GTAAGTTGCTTTTATTCTCC+TGG - chr8_2:37868378-37868397 Msa1246510:intron 35.0%
GATCACTATAGTTAACAGCA+AGG + chr8_2:37868408-37868427 None:intergenic 35.0%
ATCTGGCAAAGTTAAAATGG+GGG + chr8_2:37868511-37868530 None:intergenic 35.0%
!! AACACAGGATATCGACTTAT+TGG - chr8_2:37868667-37868686 Msa1246510:CDS 35.0%
! GTTGCTCATGTTTTCAAAGA+TGG - chr8_2:37868733-37868752 Msa1246510:CDS 35.0%
! GGCAATTTTCAATGACAACA+AGG - chr8_2:37868762-37868781 Msa1246510:intron 35.0%
TTTCAATGACAACAAGGTTG+GGG - chr8_2:37868768-37868787 Msa1246510:intron 35.0%
TACAGATAACCCATTTCCTT+GGG + chr8_2:37868808-37868827 None:intergenic 35.0%
ATACAGATAACCCATTTCCT+TGG + chr8_2:37868809-37868828 None:intergenic 35.0%
GTTATCTGTATTTCTTCGAG+AGG - chr8_2:37868818-37868837 Msa1246510:intron 35.0%
GAATATTCTCAACTGTGAAG+TGG - chr8_2:37868885-37868904 Msa1246510:CDS 35.0%
!! GTGGAAGATGATGTTTTAGA+AGG - chr8_2:37868904-37868923 Msa1246510:CDS 35.0%
CAAAGACAAAGGTAGCAATT+TGG + chr8_2:37868954-37868973 None:intergenic 35.0%
AATTGCTACCTTTGTCTTTG+TGG - chr8_2:37868954-37868973 Msa1246510:exon 35.0%
TTAACATGCCACAAAGACAA+AGG + chr8_2:37868965-37868984 None:intergenic 35.0%
TGTCTTTGTGGCATGTTAAA+TGG - chr8_2:37868966-37868985 Msa1246510:five_prime_UTR 35.0%
CATGTTAAATGGTCCTCTAA+TGG - chr8_2:37868977-37868996 Msa1246510:five_prime_UTR 35.0%
! TCACATGTAATGAAGCATTC+TGG - chr8_2:37869025-37869044 Msa1246510:five_prime_UTR 35.0%
CCTAGACATGTAATTTCTAC+AGG + chr8_2:37869071-37869090 None:intergenic 35.0%
CCTGTAGAAATTACATGTCT+AGG - chr8_2:37869068-37869087 Msa1246510:five_prime_UTR 35.0%
! ATTGATTAGCTGAAAGAGGC+AGG + chr8_2:37867364-37867383 None:intergenic 40.0%
! TTTTGTGAGTCTTCCTCATC+TGG + chr8_2:37867463-37867482 None:intergenic 40.0%
GGAAGACTCACAAAAACCTT+CGG - chr8_2:37867468-37867487 Msa1246510:three_prime_UTR 40.0%
ACAATTTCTTCATTGGCCGA+AGG + chr8_2:37867487-37867506 None:intergenic 40.0%
TGTCTCTCTACTTGTTTCCA+TGG - chr8_2:37867504-37867523 Msa1246510:three_prime_UTR 40.0%
GTCTCTCTACTTGTTTCCAT+GGG - chr8_2:37867505-37867524 Msa1246510:three_prime_UTR 40.0%
! ATCAAATGTTGGACTGGATG+CGG - chr8_2:37867567-37867586 Msa1246510:three_prime_UTR 40.0%
! GACTTGGTTACAGTTTCACA+AGG - chr8_2:37867594-37867613 Msa1246510:three_prime_UTR 40.0%
AGAACCCTATTTCAGATACC+TGG + chr8_2:37867625-37867644 None:intergenic 40.0%
!! ATTCCTATTTCTGAAGGCCA+TGG - chr8_2:37867733-37867752 Msa1246510:CDS 40.0%
TTGTCAAAGCTTCAGAACCA+TGG + chr8_2:37867753-37867772 None:intergenic 40.0%
! TCTTTTTACATTTCCCCCTG+TGG - chr8_2:37867861-37867880 Msa1246510:intron 40.0%
! CTTTTTACATTTCCCCCTGT+GGG - chr8_2:37867862-37867881 Msa1246510:intron 40.0%
GTATATGGTGTGAAACTAGG+TGG - chr8_2:37868018-37868037 Msa1246510:intron 40.0%
TGGGAGTGAGAAGTTATAGT+TGG - chr8_2:37868038-37868057 Msa1246510:intron 40.0%
CTATCTTGAATAAGTCGTGC+AGG - chr8_2:37868185-37868204 Msa1246510:CDS 40.0%
!! TCGTGCAGGAATGTTTTTGA+TGG - chr8_2:37868199-37868218 Msa1246510:CDS 40.0%
ACATTGAGAAAGCGACAGAT+TGG - chr8_2:37868255-37868274 Msa1246510:intron 40.0%
TGATGTGACAGTATCCATAC+TGG + chr8_2:37868309-37868328 None:intergenic 40.0%
TCTGGCAAAGTTAAAATGGG+GGG + chr8_2:37868510-37868529 None:intergenic 40.0%
TGTTAATCCTCCCAAGGAAA+TGG - chr8_2:37868795-37868814 Msa1246510:intron 40.0%
GTTAATCCTCCCAAGGAAAT+GGG - chr8_2:37868796-37868815 Msa1246510:intron 40.0%
!!! ATGATGTTTTAGAAGGGCAC+AGG - chr8_2:37868911-37868930 Msa1246510:CDS 40.0%
! ATTGATTAGCTGAAAGAGGC+AGG + chr8_2:37867364-37867383 None:intergenic 40.0%
! TTTTGTGAGTCTTCCTCATC+TGG + chr8_2:37867463-37867482 None:intergenic 40.0%
GGAAGACTCACAAAAACCTT+CGG - chr8_2:37867468-37867487 Msa1246510:three_prime_UTR 40.0%
ACAATTTCTTCATTGGCCGA+AGG + chr8_2:37867487-37867506 None:intergenic 40.0%
TGTCTCTCTACTTGTTTCCA+TGG - chr8_2:37867504-37867523 Msa1246510:three_prime_UTR 40.0%
GTCTCTCTACTTGTTTCCAT+GGG - chr8_2:37867505-37867524 Msa1246510:three_prime_UTR 40.0%
! ATCAAATGTTGGACTGGATG+CGG - chr8_2:37867567-37867586 Msa1246510:three_prime_UTR 40.0%
! GACTTGGTTACAGTTTCACA+AGG - chr8_2:37867594-37867613 Msa1246510:three_prime_UTR 40.0%
AGAACCCTATTTCAGATACC+TGG + chr8_2:37867625-37867644 None:intergenic 40.0%
!! ATTCCTATTTCTGAAGGCCA+TGG - chr8_2:37867733-37867752 Msa1246510:CDS 40.0%
TTGTCAAAGCTTCAGAACCA+TGG + chr8_2:37867753-37867772 None:intergenic 40.0%
! TCTTTTTACATTTCCCCCTG+TGG - chr8_2:37867861-37867880 Msa1246510:intron 40.0%
! CTTTTTACATTTCCCCCTGT+GGG - chr8_2:37867862-37867881 Msa1246510:intron 40.0%
GTATATGGTGTGAAACTAGG+TGG - chr8_2:37868018-37868037 Msa1246510:intron 40.0%
TGGGAGTGAGAAGTTATAGT+TGG - chr8_2:37868038-37868057 Msa1246510:intron 40.0%
CTATCTTGAATAAGTCGTGC+AGG - chr8_2:37868185-37868204 Msa1246510:CDS 40.0%
!! TCGTGCAGGAATGTTTTTGA+TGG - chr8_2:37868199-37868218 Msa1246510:CDS 40.0%
ACATTGAGAAAGCGACAGAT+TGG - chr8_2:37868255-37868274 Msa1246510:intron 40.0%
TGATGTGACAGTATCCATAC+TGG + chr8_2:37868309-37868328 None:intergenic 40.0%
TCTGGCAAAGTTAAAATGGG+GGG + chr8_2:37868510-37868529 None:intergenic 40.0%
TGTTAATCCTCCCAAGGAAA+TGG - chr8_2:37868795-37868814 Msa1246510:intron 40.0%
GTTAATCCTCCCAAGGAAAT+GGG - chr8_2:37868796-37868815 Msa1246510:intron 40.0%
!!! ATGATGTTTTAGAAGGGCAC+AGG - chr8_2:37868911-37868930 Msa1246510:CDS 40.0%
CAGTTTCACAAGGATGATCC+AGG - chr8_2:37867604-37867623 Msa1246510:three_prime_UTR 45.0%
!! AGAAAGGTACCTCGTAATGC+AGG - chr8_2:37867669-37867688 Msa1246510:CDS 45.0%
!! GAAAGGTACCTCGTAATGCA+GGG - chr8_2:37867670-37867689 Msa1246510:CDS 45.0%
!! AAAGGTACCTCGTAATGCAG+GGG - chr8_2:37867671-37867690 Msa1246510:CDS 45.0%
ATTATGACCCCTGCATTACG+AGG + chr8_2:37867681-37867700 None:intergenic 45.0%
GAACCATGGCCTTCAGAAAT+AGG + chr8_2:37867739-37867758 None:intergenic 45.0%
TCATGAAGCAAAAGCCCACA+GGG + chr8_2:37867879-37867898 None:intergenic 45.0%
ATCATGAAGCAAAAGCCCAC+AGG + chr8_2:37867880-37867899 None:intergenic 45.0%
AGTTAACAGCAAGGTACACC+AGG + chr8_2:37868399-37868418 None:intergenic 45.0%
CTATCATGCTCATATCTGCC+AGG - chr8_2:37868559-37868578 Msa1246510:intron 45.0%
!! TTTTCCCTCAAGCATTGTCC+TGG + chr8_2:37868580-37868599 None:intergenic 45.0%
ATTGGAGTTGTTAGCCACAG+TGG - chr8_2:37868685-37868704 Msa1246510:CDS 45.0%
AGATAACCCATTTCCTTGGG+AGG + chr8_2:37868805-37868824 None:intergenic 45.0%
AATACGACTCAGGCCATTAG+AGG + chr8_2:37868993-37869012 None:intergenic 45.0%
CAGTTTCACAAGGATGATCC+AGG - chr8_2:37867604-37867623 Msa1246510:three_prime_UTR 45.0%
!! AGAAAGGTACCTCGTAATGC+AGG - chr8_2:37867669-37867688 Msa1246510:CDS 45.0%
!! GAAAGGTACCTCGTAATGCA+GGG - chr8_2:37867670-37867689 Msa1246510:CDS 45.0%
!! AAAGGTACCTCGTAATGCAG+GGG - chr8_2:37867671-37867690 Msa1246510:CDS 45.0%
ATTATGACCCCTGCATTACG+AGG + chr8_2:37867681-37867700 None:intergenic 45.0%
GAACCATGGCCTTCAGAAAT+AGG + chr8_2:37867739-37867758 None:intergenic 45.0%
TCATGAAGCAAAAGCCCACA+GGG + chr8_2:37867879-37867898 None:intergenic 45.0%
ATCATGAAGCAAAAGCCCAC+AGG + chr8_2:37867880-37867899 None:intergenic 45.0%
AGTTAACAGCAAGGTACACC+AGG + chr8_2:37868399-37868418 None:intergenic 45.0%
CTATCATGCTCATATCTGCC+AGG - chr8_2:37868559-37868578 Msa1246510:intron 45.0%
!! TTTTCCCTCAAGCATTGTCC+TGG + chr8_2:37868580-37868599 None:intergenic 45.0%
ATTGGAGTTGTTAGCCACAG+TGG - chr8_2:37868685-37868704 Msa1246510:CDS 45.0%
AGATAACCCATTTCCTTGGG+AGG + chr8_2:37868805-37868824 None:intergenic 45.0%
AATACGACTCAGGCCATTAG+AGG + chr8_2:37868993-37869012 None:intergenic 45.0%
TGAGTCTTCCTCATCTGGTG+CGG + chr8_2:37867458-37867477 None:intergenic 50.0%
ACGGAGATGATCAAAGCCCA+TGG + chr8_2:37867524-37867543 None:intergenic 50.0%
ATGAAGCAAAAGCCCACAGG+GGG + chr8_2:37867877-37867896 None:intergenic 50.0%
CATGAAGCAAAAGCCCACAG+GGG + chr8_2:37867878-37867897 None:intergenic 50.0%
ATACTGGAGACTGATGCCTC+AGG + chr8_2:37868293-37868312 None:intergenic 50.0%
! TGAGGCATCAGTCTCCAGTA+TGG - chr8_2:37868292-37868311 Msa1246510:intron 50.0%
GCATCCATTTCCGTTGACAC+TGG - chr8_2:37868335-37868354 Msa1246510:intron 50.0%
AACTTACTCCCTCCTCCATC+AGG + chr8_2:37868365-37868384 None:intergenic 50.0%
ATCTGCCAGGACAATGCTTG+AGG - chr8_2:37868572-37868591 Msa1246510:intron 50.0%
TCTGCCAGGACAATGCTTGA+GGG - chr8_2:37868573-37868592 Msa1246510:intron 50.0%
GGCTTCTGTTAATCCTCCCA+AGG - chr8_2:37868789-37868808 Msa1246510:intron 50.0%
TGAGTCTTCCTCATCTGGTG+CGG + chr8_2:37867458-37867477 None:intergenic 50.0%
ACGGAGATGATCAAAGCCCA+TGG + chr8_2:37867524-37867543 None:intergenic 50.0%
ATGAAGCAAAAGCCCACAGG+GGG + chr8_2:37867877-37867896 None:intergenic 50.0%
CATGAAGCAAAAGCCCACAG+GGG + chr8_2:37867878-37867897 None:intergenic 50.0%
ATACTGGAGACTGATGCCTC+AGG + chr8_2:37868293-37868312 None:intergenic 50.0%
! TGAGGCATCAGTCTCCAGTA+TGG - chr8_2:37868292-37868311 Msa1246510:intron 50.0%
GCATCCATTTCCGTTGACAC+TGG - chr8_2:37868335-37868354 Msa1246510:intron 50.0%
AACTTACTCCCTCCTCCATC+AGG + chr8_2:37868365-37868384 None:intergenic 50.0%
ATCTGCCAGGACAATGCTTG+AGG - chr8_2:37868572-37868591 Msa1246510:intron 50.0%
TCTGCCAGGACAATGCTTGA+GGG - chr8_2:37868573-37868592 Msa1246510:intron 50.0%
GGCTTCTGTTAATCCTCCCA+AGG - chr8_2:37868789-37868808 Msa1246510:intron 50.0%
!! GACTGGATGCGGCATTGACT+TGG - chr8_2:37867578-37867597 Msa1246510:three_prime_UTR 55.0%
CAGGCCAGTGTCAACGGAAA+TGG + chr8_2:37868342-37868361 None:intergenic 55.0%
ATCAGGCAGGCCAGTGTCAA+CGG + chr8_2:37868348-37868367 None:intergenic 55.0%
ACAGCGTAGAGGTTCCACTG+TGG + chr8_2:37868702-37868721 None:intergenic 55.0%
AGTGGAACCTCTACGCTGTG+TGG - chr8_2:37868703-37868722 Msa1246510:CDS 55.0%
GTAGTGACCACACAGCGTAG+AGG + chr8_2:37868713-37868732 None:intergenic 55.0%
!! GACTGGATGCGGCATTGACT+TGG - chr8_2:37867578-37867597 Msa1246510:three_prime_UTR 55.0%
CAGGCCAGTGTCAACGGAAA+TGG + chr8_2:37868342-37868361 None:intergenic 55.0%
ATCAGGCAGGCCAGTGTCAA+CGG + chr8_2:37868348-37868367 None:intergenic 55.0%
ACAGCGTAGAGGTTCCACTG+TGG + chr8_2:37868702-37868721 None:intergenic 55.0%
AGTGGAACCTCTACGCTGTG+TGG - chr8_2:37868703-37868722 Msa1246510:CDS 55.0%
GTAGTGACCACACAGCGTAG+AGG + chr8_2:37868713-37868732 None:intergenic 55.0%
! GTGACTTGCCGCACCAGATG+AGG - chr8_2:37867447-37867466 Msa1246510:three_prime_UTR 60.0%
! GTTGACACTGGCCTGCCTGA+TGG - chr8_2:37868347-37868366 Msa1246510:intron 60.0%
TACTCCCTCCTCCATCAGGC+AGG + chr8_2:37868361-37868380 None:intergenic 60.0%
! GTGACTTGCCGCACCAGATG+AGG - chr8_2:37867447-37867466 Msa1246510:three_prime_UTR 60.0%
! GTTGACACTGGCCTGCCTGA+TGG - chr8_2:37868347-37868366 Msa1246510:intron 60.0%
TACTCCCTCCTCCATCAGGC+AGG + chr8_2:37868361-37868380 None:intergenic 60.0%
! GACACTGGCCTGCCTGATGG+AGG - chr8_2:37868350-37868369 Msa1246510:intron 65.0%
! ACTGGCCTGCCTGATGGAGG+AGG - chr8_2:37868353-37868372 Msa1246510:intron 65.0%
CTGGCCTGCCTGATGGAGGA+GGG - chr8_2:37868354-37868373 Msa1246510:intron 65.0%
! GACACTGGCCTGCCTGATGG+AGG - chr8_2:37868350-37868369 Msa1246510:intron 65.0%
! ACTGGCCTGCCTGATGGAGG+AGG - chr8_2:37868353-37868372 Msa1246510:intron 65.0%
CTGGCCTGCCTGATGGAGGA+GGG - chr8_2:37868354-37868373 Msa1246510:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 37867335 37869145 37867335 ID=Msa1246510;Name=Msa1246510
chr8_2 mRNA 37867335 37869145 37867335 ID=Msa1246510-mRNA-1;Parent=Msa1246510;Name=Msa1246510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=188|1|1|1|1|1|4|293|179
chr8_2 exon 37867335 37867806 37867335 ID=Msa1246510-mRNA-1:exon:11881;Parent=Msa1246510-mRNA-1
chr8_2 exon 37868103 37868232 37868103 ID=Msa1246510-mRNA-1:exon:11880;Parent=Msa1246510-mRNA-1
chr8_2 exon 37868628 37868755 37868628 ID=Msa1246510-mRNA-1:exon:11879;Parent=Msa1246510-mRNA-1
chr8_2 exon 37868855 37869145 37868855 ID=Msa1246510-mRNA-1:exon:11878;Parent=Msa1246510-mRNA-1
chr8_2 five_prime_UTR 37868958 37869145 37868958 ID=Msa1246510-mRNA-1:five_prime_utr;Parent=Msa1246510-mRNA-1
chr8_2 CDS 37868855 37868957 37868855 ID=Msa1246510-mRNA-1:cds;Parent=Msa1246510-mRNA-1
chr8_2 CDS 37868628 37868755 37868628 ID=Msa1246510-mRNA-1:cds;Parent=Msa1246510-mRNA-1
chr8_2 CDS 37868103 37868232 37868103 ID=Msa1246510-mRNA-1:cds;Parent=Msa1246510-mRNA-1
chr8_2 CDS 37867628 37867806 37867628 ID=Msa1246510-mRNA-1:cds;Parent=Msa1246510-mRNA-1
chr8_2 three_prime_UTR 37867335 37867627 37867335 ID=Msa1246510-mRNA-1:three_prime_utr;Parent=Msa1246510-mRNA-1
Gene Sequence

>Msa1246510

ATGGGCTTTGATCATCTCCGTTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGACTGGATGCGGCATTGACTTGGTTACAGTTTCACAAGGATGATCCAGATATTGACATTCCTATTTCTGAAGGCCATGGTTCTGAAGCTTTGACAACTCTTGACCAATCAAAAGTTGATCAGCTAATTACGTTCGGATTTCAAGAAGATATTGCTCGAAAAGCTCTGAAAGCATCAGGAGGTGACATTGAGAAAGCGACAGATTGGATATTTAGCAATCCTGAGGCATCAGTCTCCAGTATGGATACTGTCACATCAGACACTGCATCCATTTCCGTTGACACTGGCCTGCCTGATGGAGGAGGGAGATATCGACTTATTGGAGTTGTTAGCCACAGTGGAACCTCTACGCTGTGTGGTCACTACGTTGCTCATGTTTTCAAAGATGGTAGATGGGCAATTTTCAATGACAACAAGGTTGGGGCTTCTGTTAATCCTCCCAAGGAAATGGGTTATCTGTATTTCTTCGAGAGGCTTCATGATTGA

Protein sequence

>Msa1246510

MGFDHLRCQKAAINTSNVGLDAALTWLQFHKDDPDIDIPISEGHGSEALTTLDQSKVDQLITFGFQEDIARKALKASGGDIEKATDWIFSNPEASVSSMDTVTSDTASISVDTGLPDGGGRYRLIGVVSHSGTSTLCGHYVAHVFKDGRWAIFNDNKVGASVNPPKEMGYLYFFERLHD*