AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738030 MtrunA17_Chr5g0436191 98.104 422 8 0 1 422 1 422 0.0 855
Msa0738030 MtrunA17_Chr3g0112781 71.494 435 104 6 1 416 1 434 0.0 624
Msa0738030 MtrunA17_Chr1g0154851 52.604 384 162 9 1 378 1 370 1.22e-135 394
Msa0738030 MtrunA17_Chr3g0141481 52.713 387 159 10 1 378 8 379 6.04e-135 392
Msa0738030 MtrunA17_Chr5g0403841 50.262 382 165 7 1 373 10 375 1.74e-131 383
Msa0738030 MtrunA17_Chr1g0207581 43.382 408 211 7 14 419 74 463 4.60e-112 337
Msa0738030 MtrunA17_Chr1g0152841 47.634 317 158 2 58 374 113 421 3.46e-107 324
Msa0738030 MtrunA17_Chr3g0134521 46.580 307 156 2 68 374 93 391 3.72e-102 309
Msa0738030 MtrunA17_Chr2g0309941 42.742 372 193 5 14 373 17 380 2.42e-100 304
Msa0738030 MtrunA17_Chr1g0176101 41.875 320 166 5 58 376 50 350 5.86e-84 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738030 AT5G05840.1 61.827 427 143 6 1 408 1 426 0.0 516
Msa0738030 AT3G55720.1 53.241 432 178 10 1 409 1 431 2.42e-145 421
Msa0738030 AT1G75160.1 51.621 401 162 8 1 377 3 395 2.87e-131 384
Msa0738030 AT5G66740.1 50.263 380 170 6 1 374 1 367 2.98e-131 382
Msa0738030 AT3G19540.1 49.367 316 151 2 59 374 129 435 3.29e-107 325
Msa0738030 AT1G49840.1 40.821 414 224 6 6 409 78 480 2.55e-106 323
Msa0738030 AT1G27690.1 43.684 380 197 6 6 376 41 412 3.27e-105 318
Msa0738030 AT1G79420.1 38.718 390 207 10 13 376 19 402 2.38e-91 282
Msa0738030 AT5G06610.1 37.466 371 203 9 14 376 4 353 2.03e-78 247

Find 105 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAGAGTTGGTGGTTTC+TGG 0.051533 5_1:-55714989 Msa0738030:CDS
CTGAAACTGAATCCATATTT+TGG 0.075141 5_1:-55713329 Msa0738030:CDS
GATGATCTTGATTCACTATT+TGG 0.153365 5_1:+55715703 None:intergenic
TGTATTTGTTTCCCAAAATA+TGG 0.188883 5_1:+55713317 None:intergenic
GGCATCATTCTCATGCTTCT+AGG 0.228218 5_1:-55714913 Msa0738030:CDS
TTGAAGAGAGATGAAGAAAA+AGG 0.287471 5_1:-55713096 Msa0738030:CDS
GAACCAAAAGTCCCGTTCTT+TGG 0.288761 5_1:+55713388 None:intergenic
CAGCCAAAGAACGGGACTTT+TGG 0.293857 5_1:-55713391 Msa0738030:CDS
CTTCTATACTTACAATGTTA+TGG 0.298201 5_1:+55715563 None:intergenic
ATCATCACTCGGAACATTAA+AGG 0.303398 5_1:-55715586 Msa0738030:CDS
CCATGTGGTTCCACTCTTGT+TGG 0.309635 5_1:+55715750 None:intergenic
TAATATTAAAGGGTTGTCTT+TGG 0.310573 5_1:-55713142 Msa0738030:CDS
TTGTTGGTGAAAATATCTTC+TGG 0.344725 5_1:+55715766 None:intergenic
TAGCACATTGTGGGAAAACT+TGG 0.371373 5_1:-55713251 Msa0738030:CDS
AGAGTTTGTGGTAGGGGAAG+GGG 0.373912 5_1:-55715110 Msa0738030:CDS
CAAGGCCATCCTCATGATAA+AGG 0.376628 5_1:+55715812 None:intergenic
AATAATGAGAATATGTATCT+TGG 0.376796 5_1:+55715908 None:intergenic
CACATCAATAGCAGCTACTT+TGG 0.378200 5_1:+55713005 None:intergenic
GCATCATTCTCATGCTTCTA+GGG 0.380106 5_1:-55714912 Msa0738030:CDS
AGTAGCAACATAGAGATAAT+TGG 0.382458 5_1:-55713435 Msa0738030:CDS
TATCACTAGTTCTGTTGGTT+TGG 0.390856 5_1:-55712919 Msa0738030:three_prime_UTR
AAAAGTTGAATATTTGTGTT+TGG 0.391721 5_1:+55715667 None:intergenic
GTTTAGAGTTGGTGGTTTCT+GGG 0.395885 5_1:-55714988 Msa0738030:CDS
GGTGGATATGAAAGAAGAGT+TGG 0.398116 5_1:-55715050 Msa0738030:CDS
GGCTATTTCAGCCAAAGAAC+GGG 0.399009 5_1:-55713399 Msa0738030:CDS
GCCACTTAAACGTTTACTTC+AGG 0.407710 5_1:-55714879 Msa0738030:intron
CTTGTCCTTGAATGATTCTC+AGG 0.407841 5_1:+55713201 None:intergenic
TGGGTCACTTTATCAAGGTT+TGG 0.410083 5_1:-55713231 Msa0738030:CDS
AACTCTAAACACCACAATTC+TGG 0.410084 5_1:+55715001 None:intergenic
AATAGATTGGCAGTGGACTT+TGG 0.412063 5_1:+55713555 None:intergenic
GGACAAGTATAAATGAGGTT+TGG 0.421027 5_1:-55713185 Msa0738030:CDS
TTTAATGTTCCGAGTGATGA+TGG 0.425423 5_1:+55715588 None:intergenic
GGTTTGTACTCATTAGTGAT+AGG 0.438302 5_1:+55715610 None:intergenic
ACCTGAAGTAAACGTTTAAG+TGG 0.449339 5_1:+55714878 None:intergenic
TGTTGGTGAAAATATCTTCT+GGG 0.457944 5_1:+55715767 None:intergenic
TGTAATATCACTAGTTCTGT+TGG 0.461192 5_1:-55712924 Msa0738030:three_prime_UTR
TACTCATTAGTGATAGGAAA+AGG 0.467257 5_1:+55715616 None:intergenic
GTGATAGGAAAAGGAATCAA+TGG 0.469817 5_1:+55715625 None:intergenic
TGTTGAGTTGTTGAATAGAT+TGG 0.471791 5_1:+55713542 None:intergenic
ATTGTGGTGTTTAGAGTTGG+TGG 0.473766 5_1:-55714996 Msa0738030:CDS
CAGAGTTTGTGGTAGGGGAA+GGG 0.478274 5_1:-55715111 Msa0738030:CDS
ATAATGAGAATATGTATCTT+GGG 0.479240 5_1:+55715909 None:intergenic
AAACTTGGGTCACTTTATCA+AGG 0.484471 5_1:-55713236 Msa0738030:CDS
CATACAAGACTATAGAATAG+TGG 0.484564 5_1:-55713286 Msa0738030:CDS
GCTTCTTGTTTGTAATGAAG+TGG 0.484584 5_1:+55713458 None:intergenic
AATAGGTACCTCAGAGTTTG+TGG 0.486835 5_1:-55715122 Msa0738030:CDS
AAAATTAGTGCAGGGAGTGA+TGG 0.488027 5_1:-55714962 Msa0738030:CDS
GAACTTCTAGCACAGTTTCA+AGG 0.494000 5_1:+55715794 None:intergenic
GATGGTGAAGAAAGTGAAGA+AGG 0.494517 5_1:-55715071 Msa0738030:CDS
AAATGAGGTTTGGAAAATTG+AGG 0.496792 5_1:-55713175 Msa0738030:CDS
GAGTTTGTGGTAGGGGAAGG+GGG 0.497184 5_1:-55715109 Msa0738030:CDS
TGCGTCATCACATCATATTT+AGG 0.501079 5_1:+55716004 None:intergenic
GTGGATATGAAAGAAGAGTT+GGG 0.501576 5_1:-55715049 Msa0738030:CDS
TTCAAGGACAAGTATAAATG+AGG 0.502582 5_1:-55713190 Msa0738030:CDS
TCTGGGTACAAAATTAGTGC+AGG 0.503450 5_1:-55714971 Msa0738030:CDS
TCAGAGTTTGTGGTAGGGGA+AGG 0.507152 5_1:-55715112 Msa0738030:CDS
GCCATCCTCATGATAAAGGT+TGG 0.509678 5_1:+55715816 None:intergenic
TACCTCAGAGTTTGTGGTAG+GGG 0.512855 5_1:-55715116 Msa0738030:CDS
AGTAAACGTTTAAGTGGCCT+AGG 0.518850 5_1:+55714884 None:intergenic
CCATCCTCATGATAAAGGTT+GGG 0.519135 5_1:+55715817 None:intergenic
GTATTCAAATAGCACATTGT+GGG 0.530481 5_1:-55713260 Msa0738030:CDS
AAAACAATATGTTGCAGCTG+TGG 0.532218 5_1:-55715200 Msa0738030:CDS
GTTGAAAGTATGTATGCAAT+GGG 0.538137 5_1:-55715154 Msa0738030:CDS
TTTGTCTAGTTAAGATCGAA+AGG 0.538678 5_1:+55716065 None:intergenic
CCCAACCTTTATCATGAGGA+TGG 0.540030 5_1:-55715817 Msa0738030:CDS
GCAATGGGTGAAGTGAGAAT+AGG 0.542727 5_1:-55715139 Msa0738030:CDS
TTAATGTTCCGAGTGATGAT+GGG 0.547777 5_1:+55715589 None:intergenic
AGGCTATTTCAGCCAAAGAA+CGG 0.548971 5_1:-55713400 Msa0738030:CDS
TGCAGGGAGTGATGGAAAAG+TGG 0.552240 5_1:-55714954 Msa0738030:CDS
GTGATGGAAAAGTGGCTTGG+AGG 0.553808 5_1:-55714946 Msa0738030:CDS
GTGAAAATATCTTCTGGGAT+GGG 0.555387 5_1:+55715772 None:intergenic
AGAATTGTGGTGTTTAGAGT+TGG 0.558165 5_1:-55714999 Msa0738030:CDS
TTGCTTCATGTTCTTCCATG+TGG 0.558177 5_1:+55715735 None:intergenic
GGAGTGATGGAAAAGTGGCT+TGG 0.558565 5_1:-55714949 Msa0738030:CDS
GGTGAAGAAAGTGAAGAAGG+TGG 0.561830 5_1:-55715068 Msa0738030:CDS
GGGTGTGAATAGCAAGAAGA+TGG 0.564348 5_1:-55715089 Msa0738030:CDS
GTTGTTGAATAGATTGGCAG+TGG 0.565381 5_1:+55713548 None:intergenic
CATCATTCTCATGCTTCTAG+GGG 0.571410 5_1:-55714911 Msa0738030:CDS
TTGTCCCAACCTTTATCATG+AGG 0.572543 5_1:-55715821 Msa0738030:CDS
GGTGAAAATATCTTCTGGGA+TGG 0.575300 5_1:+55715771 None:intergenic
AAGGACCTGAGAATCATTCA+AGG 0.576245 5_1:-55713206 Msa0738030:CDS
GGTACCTCAGAGTTTGTGGT+AGG 0.581374 5_1:-55715118 Msa0738030:CDS
AAACAATATGTTGCAGCTGT+GGG 0.581917 5_1:-55715199 Msa0738030:CDS
TGTTGAAAGTATGTATGCAA+TGG 0.588575 5_1:-55715155 Msa0738030:CDS
GGTATTCAAATAGCACATTG+TGG 0.592853 5_1:-55713261 Msa0738030:CDS
TCATCTCTCTTCAAATCACT+AGG 0.595333 5_1:+55713105 None:intergenic
TGGCTTGGAGGCAAACACCT+TGG 0.599300 5_1:-55714934 Msa0738030:CDS
CAAAGTAGCTGCTATTGATG+TGG 0.599483 5_1:-55713004 Msa0738030:CDS
AGCACATTGTGGGAAAACTT+GGG 0.600682 5_1:-55713250 Msa0738030:CDS
ACTTTATCAAGGTTTGGTGA+AGG 0.603544 5_1:-55713225 Msa0738030:CDS
CAATATGTTGCAGCTGTGGG+AGG 0.604968 5_1:-55715196 Msa0738030:CDS
CATGGAAGAACATGAAGCAA+TGG 0.606163 5_1:-55715732 Msa0738030:CDS
GTACCTCAGAGTTTGTGGTA+GGG 0.607485 5_1:-55715117 Msa0738030:CDS
CTGGGTACAAAATTAGTGCA+GGG 0.608598 5_1:-55714970 Msa0738030:CDS
ATGCTTCTAGGGGTCCACCT+AGG 0.608662 5_1:-55714901 Msa0738030:CDS
TTCAACAACTCAACATGCAT+AGG 0.619833 5_1:-55713534 Msa0738030:CDS
CAAGACTATAGAATAGTGGA+TGG 0.626381 5_1:-55713282 Msa0738030:CDS
GAAGCATGAGAATGATGCCA+AGG 0.632801 5_1:+55714917 None:intergenic
CCAACAAGAGTGGAACCACA+TGG 0.640059 5_1:-55715750 Msa0738030:CDS
TCTCTCTTCAAATCACTAGG+AGG 0.655690 5_1:+55713108 None:intergenic
AGTACAAACCCATCATCACT+CGG 0.661995 5_1:-55715597 Msa0738030:CDS
TTCCCCTACCACAAACTCTG+AGG 0.664595 5_1:+55715114 None:intergenic
AAACGTTTAAGTGGCCTAGG+TGG 0.667507 5_1:+55714887 None:intergenic
GATATGAAAGAAGAGTTGGG+AGG 0.679988 5_1:-55715046 Msa0738030:CDS
GGCAAAAGAGACCAGAATTG+TGG 0.686509 5_1:-55715012 Msa0738030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTATTTTTATAACAA+TGG - chr5_1:55714317-55714336 Msa0738030:intron 10.0%
!! TATAACAAAAAATATAAGTT+TGG - chr5_1:55714505-55714524 Msa0738030:intron 10.0%
!!! AAGTTGATTTTAATATTAAA+GGG - chr5_1:55715799-55715818 Msa0738030:CDS 10.0%
!!! TTTTGTCTAATTAAAAATTG+TGG + chr5_1:55713470-55713489 None:intergenic 15.0%
!!! TTCTCAAAATTTTATCTAAA+TGG - chr5_1:55713575-55713594 Msa0738030:intron 15.0%
!!! ATAATTTTTATGTGTTTTGA+AGG - chr5_1:55713703-55713722 Msa0738030:intron 15.0%
!!! GAAGTTGATTTTAATATTAA+AGG - chr5_1:55715798-55715817 Msa0738030:CDS 15.0%
!!! AAGACTTTAGAGATAAAAAA+GGG + chr5_1:55712996-55713015 None:intergenic 20.0%
!!! AAAGACTTTAGAGATAAAAA+AGG + chr5_1:55712997-55713016 None:intergenic 20.0%
!! ATAATGAGAATATGTATCTT+GGG + chr5_1:55713045-55713064 None:intergenic 20.0%
!! AATAATGAGAATATGTATCT+TGG + chr5_1:55713046-55713065 None:intergenic 20.0%
!! AAAAGTTGAATATTTGTGTT+TGG + chr5_1:55713287-55713306 None:intergenic 20.0%
!!! AAACTCATATGTTTTTACTT+AGG - chr5_1:55713487-55713506 Msa0738030:CDS 20.0%
!! CCTTTATGTAAAAAAGATAA+GGG + chr5_1:55714475-55714494 None:intergenic 20.0%
!! ACCTTTATGTAAAAAAGATA+AGG + chr5_1:55714476-55714495 None:intergenic 20.0%
!!! ATTTCCAAATTGTTTTTTCA+TGG - chr5_1:55714624-55714643 Msa0738030:intron 20.0%
!! ATTTCCATGAAAAAACAATT+TGG + chr5_1:55714631-55714650 None:intergenic 20.0%
!!! TAATTTTGTCTAAATTCAAG+TGG + chr5_1:55714973-55714992 None:intergenic 20.0%
!!! GTTTTGAAAATGTTAATATG+AGG - chr5_1:55715072-55715091 Msa0738030:CDS 20.0%
!!! ATGTTAATATGAGGAAATTT+TGG - chr5_1:55715081-55715100 Msa0738030:CDS 20.0%
!!! TGTTAATATGAGGAAATTTT+GGG - chr5_1:55715082-55715101 Msa0738030:CDS 20.0%
!!! ATTATTGTCTTAATTTGAAC+AGG - chr5_1:55715365-55715384 Msa0738030:intron 20.0%
!!! TTATTGTCTTAATTTGAACA+GGG - chr5_1:55715366-55715385 Msa0738030:intron 20.0%
!!! AGATTTTAGTTTAATCAAGT+TGG + chr5_1:55715601-55715620 None:intergenic 20.0%
!! ACAAATATTCAACTTTTGCT+TGG - chr5_1:55713290-55713309 Msa0738030:CDS 25.0%
! CTTCTATACTTACAATGTTA+TGG + chr5_1:55713391-55713410 None:intergenic 25.0%
! TTATGAATTTAAGAAACTCG+TGG + chr5_1:55713553-55713572 None:intergenic 25.0%
!!! ATTTTTATGTGTTTTGAAGG+AGG - chr5_1:55713706-55713725 Msa0738030:intron 25.0%
!!! CCCTTATCTTTTTTACATAA+AGG - chr5_1:55714472-55714491 Msa0738030:intron 25.0%
! ACAATTTAATAGCTAATGCA+AGG - chr5_1:55714701-55714720 Msa0738030:intron 25.0%
! ACTATGATTTAAAGATTGTG+CGG + chr5_1:55714936-55714955 None:intergenic 25.0%
! CTATGATACACTTATTTGAA+TGG + chr5_1:55715004-55715023 None:intergenic 25.0%
!! GTTAATATGAGGAAATTTTG+GGG - chr5_1:55715083-55715102 Msa0738030:CDS 25.0%
!! TTAATATGAGGAAATTTTGG+GGG - chr5_1:55715084-55715103 Msa0738030:CDS 25.0%
!! CTTGTCACATATTTTTCTTT+TGG - chr5_1:55715183-55715202 Msa0738030:CDS 25.0%
!!! ACATATTTTTCTTTTGGCTA+TGG - chr5_1:55715189-55715208 Msa0738030:CDS 25.0%
!!! CATATTTTTCTTTTGGCTAT+GGG - chr5_1:55715190-55715209 Msa0738030:CDS 25.0%
! GTATAATGCATATCAAAAGA+GGG - chr5_1:55715219-55715238 Msa0738030:CDS 25.0%
! TATAATGCATATCAAAAGAG+GGG - chr5_1:55715220-55715239 Msa0738030:CDS 25.0%
!! TGAAACTGAATCCATATTTT+GGG - chr5_1:55715623-55715642 Msa0738030:CDS 25.0%
! TGTATTTGTTTCCCAAAATA+TGG + chr5_1:55715637-55715656 None:intergenic 25.0%
! TAATATTAAAGGGTTGTCTT+TGG - chr5_1:55715809-55715828 Msa0738030:CDS 25.0%
!! GAAGCAGATTGAATTTTATA+TGG + chr5_1:55715909-55715928 None:intergenic 25.0%
TTTGTCTAGTTAAGATCGAA+AGG + chr5_1:55712889-55712908 None:intergenic 30.0%
! TGTTGGTGAAAATATCTTCT+GGG + chr5_1:55713187-55713206 None:intergenic 30.0%
! TTGTTGGTGAAAATATCTTC+TGG + chr5_1:55713188-55713207 None:intergenic 30.0%
GATGATCTTGATTCACTATT+TGG + chr5_1:55713251-55713270 None:intergenic 30.0%
TACTCATTAGTGATAGGAAA+AGG + chr5_1:55713338-55713357 None:intergenic 30.0%
!!! GATTTTTTCGAAGCTTTTTG+TGG - chr5_1:55713597-55713616 Msa0738030:intron 30.0%
! TGTTGAAAGTATGTATGCAA+TGG - chr5_1:55713796-55713815 Msa0738030:intron 30.0%
! GTTGAAAGTATGTATGCAAT+GGG - chr5_1:55713797-55713816 Msa0738030:intron 30.0%
AAGGGAAAACAAAGTGAAAT+GGG + chr5_1:55714457-55714476 None:intergenic 30.0%
TAAGGGAAAACAAAGTGAAA+TGG + chr5_1:55714458-55714477 None:intergenic 30.0%
!!! TGACCTTTTTCAAATGAGAA+GGG + chr5_1:55714604-55714623 None:intergenic 30.0%
!!! TTGACCTTTTTCAAATGAGA+AGG + chr5_1:55714605-55714624 None:intergenic 30.0%
AAATGTAGACCTTCACTTTA+TGG + chr5_1:55714667-55714686 None:intergenic 30.0%
CTATGATTTAAAGATTGTGC+GGG + chr5_1:55714935-55714954 None:intergenic 30.0%
!! ATGTCGATTTATTGTTCAAC+CGG - chr5_1:55715027-55715046 Msa0738030:CDS 30.0%
GGTATAATGCATATCAAAAG+AGG - chr5_1:55715218-55715237 Msa0738030:CDS 30.0%
TCAAAAGAGGGGAATATAAA+AGG - chr5_1:55715231-55715250 Msa0738030:intron 30.0%
! TGTTGAGTTGTTGAATAGAT+TGG + chr5_1:55715412-55715431 None:intergenic 30.0%
AGTAGCAACATAGAGATAAT+TGG - chr5_1:55715516-55715535 Msa0738030:intron 30.0%
! ATAATTGGTCACACAGTTTT+AGG - chr5_1:55715531-55715550 Msa0738030:intron 30.0%
! CTGAAACTGAATCCATATTT+TGG - chr5_1:55715622-55715641 Msa0738030:CDS 30.0%
CATACAAGACTATAGAATAG+TGG - chr5_1:55715665-55715684 Msa0738030:CDS 30.0%
GTATTCAAATAGCACATTGT+GGG - chr5_1:55715691-55715710 Msa0738030:CDS 30.0%
TTCAAGGACAAGTATAAATG+AGG - chr5_1:55715761-55715780 Msa0738030:CDS 30.0%
AAATGAGGTTTGGAAAATTG+AGG - chr5_1:55715776-55715795 Msa0738030:CDS 30.0%
TTGAAGAGAGATGAAGAAAA+AGG - chr5_1:55715855-55715874 Msa0738030:five_prime_UTR 30.0%
!! TGTAATATCACTAGTTCTGT+TGG - chr5_1:55716027-55716046 Msa0738030:five_prime_UTR 30.0%
TGCGTCATCACATCATATTT+AGG + chr5_1:55712950-55712969 None:intergenic 35.0%
!! GTGAAAATATCTTCTGGGAT+GGG + chr5_1:55713182-55713201 None:intergenic 35.0%
! GATATTTTCACCAACAAGAG+TGG - chr5_1:55713191-55713210 Msa0738030:CDS 35.0%
GTGATAGGAAAAGGAATCAA+TGG + chr5_1:55713329-55713348 None:intergenic 35.0%
GGTTTGTACTCATTAGTGAT+AGG + chr5_1:55713344-55713363 None:intergenic 35.0%
TTAATGTTCCGAGTGATGAT+GGG + chr5_1:55713365-55713384 None:intergenic 35.0%
TTTAATGTTCCGAGTGATGA+TGG + chr5_1:55713366-55713385 None:intergenic 35.0%
ATCATCACTCGGAACATTAA+AGG - chr5_1:55713365-55713384 Msa0738030:CDS 35.0%
AAAACAATATGTTGCAGCTG+TGG - chr5_1:55713751-55713770 Msa0738030:intron 35.0%
AAACAATATGTTGCAGCTGT+GGG - chr5_1:55713752-55713771 Msa0738030:intron 35.0%
GTGGATATGAAAGAAGAGTT+GGG - chr5_1:55713902-55713921 Msa0738030:intron 35.0%
AACTCTAAACACCACAATTC+TGG + chr5_1:55713953-55713972 None:intergenic 35.0%
! AGAATTGTGGTGTTTAGAGT+TGG - chr5_1:55713952-55713971 Msa0738030:intron 35.0%
ACCTGAAGTAAACGTTTAAG+TGG + chr5_1:55714076-55714095 None:intergenic 35.0%
CAATTAGGCAATGTTTGGTT+AGG + chr5_1:55714545-55714564 None:intergenic 35.0%
CTAACCAAACATTGCCTAAT+TGG - chr5_1:55714543-55714562 Msa0738030:intron 35.0%
CAAACCAATTAGGCAATGTT+TGG + chr5_1:55714550-55714569 None:intergenic 35.0%
TGGGTAGATTCAAACCAATT+AGG + chr5_1:55714560-55714579 None:intergenic 35.0%
AATCTACCCAACCTAAAACT+AGG - chr5_1:55714570-55714589 Msa0738030:intron 35.0%
TAGACCTTCACTTTATGGTA+GGG + chr5_1:55714662-55714681 None:intergenic 35.0%
AGGCGTCACAACTAATTAAT+TGG + chr5_1:55714755-55714774 None:intergenic 35.0%
! GACAAGCATTGTTGACATTT+AGG + chr5_1:55714775-55714794 None:intergenic 35.0%
! TGGTTTGCAAAATGTTGTGT+TGG - chr5_1:55715109-55715128 Msa0738030:CDS 35.0%
AAAGAGGGGAATATAAAAGG+AGG - chr5_1:55715234-55715253 Msa0738030:intron 35.0%
TTCAACAACTCAACATGCAT+AGG - chr5_1:55715417-55715436 Msa0738030:intron 35.0%
! GCTTCTTGTTTGTAATGAAG+TGG + chr5_1:55715496-55715515 None:intergenic 35.0%
! CAAGACTATAGAATAGTGGA+TGG - chr5_1:55715669-55715688 Msa0738030:CDS 35.0%
GGTATTCAAATAGCACATTG+TGG - chr5_1:55715690-55715709 Msa0738030:CDS 35.0%
! AAACTTGGGTCACTTTATCA+AGG - chr5_1:55715715-55715734 Msa0738030:CDS 35.0%
!! ACTTTATCAAGGTTTGGTGA+AGG - chr5_1:55715726-55715745 Msa0738030:CDS 35.0%
GGACAAGTATAAATGAGGTT+TGG - chr5_1:55715766-55715785 Msa0738030:CDS 35.0%
TCATCTCTCTTCAAATCACT+AGG + chr5_1:55715849-55715868 None:intergenic 35.0%
!! TATCACTAGTTCTGTTGGTT+TGG - chr5_1:55716032-55716051 Msa0738030:five_prime_UTR 35.0%
TTGTCCCAACCTTTATCATG+AGG - chr5_1:55713130-55713149 Msa0738030:CDS 40.0%
CCATCCTCATGATAAAGGTT+GGG + chr5_1:55713137-55713156 None:intergenic 40.0%
GAACTTCTAGCACAGTTTCA+AGG + chr5_1:55713160-55713179 None:intergenic 40.0%
! GGTGAAAATATCTTCTGGGA+TGG + chr5_1:55713183-55713202 None:intergenic 40.0%
TTGCTTCATGTTCTTCCATG+TGG + chr5_1:55713219-55713238 None:intergenic 40.0%
CATGGAAGAACATGAAGCAA+TGG - chr5_1:55713219-55713238 Msa0738030:CDS 40.0%
!!! CAACTTTTGCTTGGTGTTGT+AGG - chr5_1:55713299-55713318 Msa0738030:CDS 40.0%
AGTACAAACCCATCATCACT+CGG - chr5_1:55713354-55713373 Msa0738030:CDS 40.0%
AATAGGTACCTCAGAGTTTG+TGG - chr5_1:55713829-55713848 Msa0738030:intron 40.0%
GATGGTGAAGAAAGTGAAGA+AGG - chr5_1:55713880-55713899 Msa0738030:intron 40.0%
GGTGGATATGAAAGAAGAGT+TGG - chr5_1:55713901-55713920 Msa0738030:intron 40.0%
GATATGAAAGAAGAGTTGGG+AGG - chr5_1:55713905-55713924 Msa0738030:intron 40.0%
! ATTGTGGTGTTTAGAGTTGG+TGG - chr5_1:55713955-55713974 Msa0738030:intron 40.0%
!! TGTTTAGAGTTGGTGGTTTC+TGG - chr5_1:55713962-55713981 Msa0738030:intron 40.0%
!! GTTTAGAGTTGGTGGTTTCT+GGG - chr5_1:55713963-55713982 Msa0738030:intron 40.0%
TCTGGGTACAAAATTAGTGC+AGG - chr5_1:55713980-55713999 Msa0738030:intron 40.0%
CTGGGTACAAAATTAGTGCA+GGG - chr5_1:55713981-55714000 Msa0738030:intron 40.0%
AAAATTAGTGCAGGGAGTGA+TGG - chr5_1:55713989-55714008 Msa0738030:intron 40.0%
GCATCATTCTCATGCTTCTA+GGG - chr5_1:55714039-55714058 Msa0738030:intron 40.0%
CATCATTCTCATGCTTCTAG+GGG - chr5_1:55714040-55714059 Msa0738030:intron 40.0%
AGTAAACGTTTAAGTGGCCT+AGG + chr5_1:55714070-55714089 None:intergenic 40.0%
GCCACTTAAACGTTTACTTC+AGG - chr5_1:55714072-55714091 Msa0738030:intron 40.0%
! TAACAATGGACTCAATCCCA+TGG - chr5_1:55714331-55714350 Msa0738030:intron 40.0%
!!! GAAGCACCTAGTTTTAGGTT+GGG + chr5_1:55714579-55714598 None:intergenic 40.0%
!!! CCTTTTTCAAATGAGAAGGG+AGG + chr5_1:55714601-55714620 None:intergenic 40.0%
CCTCCCTTCTCATTTGAAAA+AGG - chr5_1:55714598-55714617 Msa0738030:intron 40.0%
CTTCACTTTATGGTAGGGAT+AGG + chr5_1:55714657-55714676 None:intergenic 40.0%
CTATCCCTACCATAAAGTGA+AGG - chr5_1:55714655-55714674 Msa0738030:intron 40.0%
GTAGACCTTCACTTTATGGT+AGG + chr5_1:55714663-55714682 None:intergenic 40.0%
CAAAACTAGACCGAACTTCA+TGG + chr5_1:55715058-55715077 None:intergenic 40.0%
!! TTCTTTTGGCTATGGGACAA+CGG - chr5_1:55715197-55715216 Msa0738030:CDS 40.0%
! AATAGATTGGCAGTGGACTT+TGG + chr5_1:55715399-55715418 None:intergenic 40.0%
GTTGTTGAATAGATTGGCAG+TGG + chr5_1:55715406-55715425 None:intergenic 40.0%
! AGGCTATTTCAGCCAAAGAA+CGG - chr5_1:55715551-55715570 Msa0738030:intron 40.0%
TAGCACATTGTGGGAAAACT+TGG - chr5_1:55715700-55715719 Msa0738030:CDS 40.0%
AGCACATTGTGGGAAAACTT+GGG - chr5_1:55715701-55715720 Msa0738030:CDS 40.0%
! TGGGTCACTTTATCAAGGTT+TGG - chr5_1:55715720-55715739 Msa0738030:CDS 40.0%
AAGGACCTGAGAATCATTCA+AGG - chr5_1:55715745-55715764 Msa0738030:CDS 40.0%
CTTGTCCTTGAATGATTCTC+AGG + chr5_1:55715753-55715772 None:intergenic 40.0%
TCTCTCTTCAAATCACTAGG+AGG + chr5_1:55715846-55715865 None:intergenic 40.0%
GAGAGATGAAGAAAAAGGAG+TGG - chr5_1:55715860-55715879 Msa0738030:five_prime_UTR 40.0%
CACATCAATAGCAGCTACTT+TGG + chr5_1:55715949-55715968 None:intergenic 40.0%
CAAAGTAGCTGCTATTGATG+TGG - chr5_1:55715947-55715966 Msa0738030:five_prime_UTR 40.0%
CCCAACCTTTATCATGAGGA+TGG - chr5_1:55713134-55713153 Msa0738030:CDS 45.0%
GCCATCCTCATGATAAAGGT+TGG + chr5_1:55713138-55713157 None:intergenic 45.0%
CAAGGCCATCCTCATGATAA+AGG + chr5_1:55713142-55713161 None:intergenic 45.0%
GCAATGGGTGAAGTGAGAAT+AGG - chr5_1:55713812-55713831 Msa0738030:intron 45.0%
GTACCTCAGAGTTTGTGGTA+GGG - chr5_1:55713834-55713853 Msa0738030:intron 45.0%
TACCTCAGAGTTTGTGGTAG+GGG - chr5_1:55713835-55713854 Msa0738030:intron 45.0%
GGGTGTGAATAGCAAGAAGA+TGG - chr5_1:55713862-55713881 Msa0738030:intron 45.0%
GGTGAAGAAAGTGAAGAAGG+TGG - chr5_1:55713883-55713902 Msa0738030:intron 45.0%
!! AGTTGGGAGGTTTTGTGTTG+TGG - chr5_1:55713918-55713937 Msa0738030:intron 45.0%
GGCAAAAGAGACCAGAATTG+TGG - chr5_1:55713939-55713958 Msa0738030:intron 45.0%
GAAGCATGAGAATGATGCCA+AGG + chr5_1:55714037-55714056 None:intergenic 45.0%
GGCATCATTCTCATGCTTCT+AGG - chr5_1:55714038-55714057 Msa0738030:intron 45.0%
AAACGTTTAAGTGGCCTAGG+TGG + chr5_1:55714067-55714086 None:intergenic 45.0%
!!! GGAAGCACCTAGTTTTAGGT+TGG + chr5_1:55714580-55714599 None:intergenic 45.0%
ATTGTGCGGGTTTGATGCAA+GGG + chr5_1:55714922-55714941 None:intergenic 45.0%
ACCGGTTGAACCATGAAGTT+CGG - chr5_1:55715045-55715064 Msa0738030:CDS 45.0%
ACCGAACTTCATGGTTCAAC+CGG + chr5_1:55715049-55715068 None:intergenic 45.0%
!! ATGAGGAAATTTTGGGGGTG+TGG - chr5_1:55715089-55715108 Msa0738030:CDS 45.0%
! GGCTATTTCAGCCAAAGAAC+GGG - chr5_1:55715552-55715571 Msa0738030:intron 45.0%
GAACCAAAAGTCCCGTTCTT+TGG + chr5_1:55715566-55715585 None:intergenic 45.0%
!! TGTATAAAAAAAAATATTAA+AGG - chr5_1:55713621-55713640 Msa0738030:intron 5.0%
CCATGTGGTTCCACTCTTGT+TGG + chr5_1:55713204-55713223 None:intergenic 50.0%
CCAACAAGAGTGGAACCACA+TGG - chr5_1:55713201-55713220 Msa0738030:CDS 50.0%
!!! TGTTTTGAAGGAGGCGTCGA+TGG - chr5_1:55713715-55713734 Msa0738030:intron 50.0%
CAATATGTTGCAGCTGTGGG+AGG - chr5_1:55713755-55713774 Msa0738030:intron 50.0%
GGTACCTCAGAGTTTGTGGT+AGG - chr5_1:55713833-55713852 Msa0738030:intron 50.0%
TTCCCCTACCACAAACTCTG+AGG + chr5_1:55713840-55713859 None:intergenic 50.0%
TCAGAGTTTGTGGTAGGGGA+AGG - chr5_1:55713839-55713858 Msa0738030:intron 50.0%
CAGAGTTTGTGGTAGGGGAA+GGG - chr5_1:55713840-55713859 Msa0738030:intron 50.0%
AGAGTTTGTGGTAGGGGAAG+GGG - chr5_1:55713841-55713860 Msa0738030:intron 50.0%
! TGCAGGGAGTGATGGAAAAG+TGG - chr5_1:55713997-55714016 Msa0738030:intron 50.0%
! GGAGTGATGGAAAAGTGGCT+TGG - chr5_1:55714002-55714021 Msa0738030:intron 50.0%
! GTGATGGAAAAGTGGCTTGG+AGG - chr5_1:55714005-55714024 Msa0738030:intron 50.0%
! CAATGGACTCAATCCCATGG+TGG - chr5_1:55714334-55714353 Msa0738030:intron 50.0%
!!! GGGAGGAAGCACCTAGTTTT+AGG + chr5_1:55714584-55714603 None:intergenic 50.0%
TTCAAAGGGATTGGAAGGGC+AGG + chr5_1:55714872-55714891 None:intergenic 50.0%
TGCCCTTCCAATCCCTTTGA+AGG - chr5_1:55714871-55714890 Msa0738030:intron 50.0%
GCCCTTCCAATCCCTTTGAA+GGG - chr5_1:55714872-55714891 Msa0738030:intron 50.0%
GCCCTTCAAAGGGATTGGAA+GGG + chr5_1:55714876-55714895 None:intergenic 50.0%
GGACGACTCCAATCATCTCA+CGG + chr5_1:55714901-55714920 None:intergenic 50.0%
GATTGTGCGGGTTTGATGCA+AGG + chr5_1:55714923-55714942 None:intergenic 50.0%
! CAGCCAAAGAACGGGACTTT+TGG - chr5_1:55715560-55715579 Msa0738030:intron 50.0%
GAGTTTGTGGTAGGGGAAGG+GGG - chr5_1:55713842-55713861 Msa0738030:intron 55.0%
! TGGCTTGGAGGCAAACACCT+TGG - chr5_1:55714017-55714036 Msa0738030:intron 55.0%
! ATGCTTCTAGGGGTCCACCT+AGG - chr5_1:55714050-55714069 Msa0738030:intron 55.0%
TGGACTCAATCCCATGGTGG+AGG - chr5_1:55714337-55714356 Msa0738030:intron 55.0%
! GGACTCAATCCCATGGTGGA+GGG - chr5_1:55714338-55714357 Msa0738030:intron 55.0%
ATTTCCCAGCCCTCCACCAT+GGG + chr5_1:55714350-55714369 None:intergenic 55.0%
AATTTCCCAGCCCTCCACCA+TGG + chr5_1:55714351-55714370 None:intergenic 55.0%
GGCCCTTCAAAGGGATTGGA+AGG + chr5_1:55714877-55714896 None:intergenic 55.0%
TCTCACGGTGGCCCTTCAAA+GGG + chr5_1:55714886-55714905 None:intergenic 55.0%
ATCTCACGGTGGCCCTTCAA+AGG + chr5_1:55714887-55714906 None:intergenic 55.0%
AAGGGCCACCGTGAGATGAT+TGG - chr5_1:55714890-55714909 Msa0738030:CDS 55.0%
CGACTCCAATCATCTCACGG+TGG + chr5_1:55714898-55714917 None:intergenic 55.0%
! TCAATCCCATGGTGGAGGGC+TGG - chr5_1:55714342-55714361 Msa0738030:intron 60.0%
! CAATCCCATGGTGGAGGGCT+GGG - chr5_1:55714343-55714362 Msa0738030:intron 60.0%
CGGTGGCCCTTCAAAGGGAT+TGG + chr5_1:55714881-55714900 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 55712876 55716097 55712876 ID=Msa0738030;Name=Msa0738030
chr5_1 mRNA 55712876 55716097 55712876 ID=Msa0738030-mRNA-1;Parent=Msa0738030;Name=Msa0738030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=243|1|1|1|1|1|3|90|422
chr5_1 exon 55712876 55713586 55712876 ID=Msa0738030-mRNA-1:exon:15727;Parent=Msa0738030-mRNA-1
chr5_1 exon 55714880 55715248 55714880 ID=Msa0738030-mRNA-1:exon:15726;Parent=Msa0738030-mRNA-1
chr5_1 exon 55715576 55716097 55715576 ID=Msa0738030-mRNA-1:exon:15725;Parent=Msa0738030-mRNA-1
chr5_1 five_prime_UTR 55715855 55716097 55715855 ID=Msa0738030-mRNA-1:five_prime_utr;Parent=Msa0738030-mRNA-1
chr5_1 CDS 55715576 55715854 55715576 ID=Msa0738030-mRNA-1:cds;Parent=Msa0738030-mRNA-1
chr5_1 CDS 55714880 55715248 55714880 ID=Msa0738030-mRNA-1:cds;Parent=Msa0738030-mRNA-1
chr5_1 CDS 55712966 55713586 55712966 ID=Msa0738030-mRNA-1:cds;Parent=Msa0738030-mRNA-1
chr5_1 three_prime_UTR 55712876 55712965 55712876 ID=Msa0738030-mRNA-1:three_prime_utr;Parent=Msa0738030-mRNA-1
Gene Sequence

>Msa0738030

ATGAAGAAGCTTTGTCCCAACCTTTATCATGAGGATGGCCTTGAAACTGTGCTAGAAGTTCCCATCCCAGAAGATATTTTCACCAACAAGAGTGGAACCACATGGAAGAACATGAAGCAATGGATGAAACCAAATAGTGAATCAAGATCATCACGTTTTGAAGATCCAAACACAAATATTCAACTTTTGCTTGGTGTTGTAGGAGCTCCATTGATTCCTTTTCCTATCACTAATGAGTACAAACCCATCATCACTCGGAACATTAAAGGCCATAACATTGAGGCGTCGATGGCTAAGTATATAGTAAAACAATATGTTGCAGCTGTGGGAGGAGAGAGTGTTTTAAATAATGTTGAAAGTATGTATGCAATGGGTGAAGTGAGAATAGGTACCTCAGAGTTTGTGGTAGGGGAAGGGGGTGTGAATAGCAAGAAGATGGTGAAGAAAGTGAAGAAGGTGGATATGAAAGAAGAGTTGGGAGGTTTTGTGTTGTGGCAAAAGAGACCAGAATTGTGGTGTTTAGAGTTGGTGGTTTCTGGGTACAAAATTAGTGCAGGGAGTGATGGAAAAGTGGCTTGGAGGCAAACACCTTGGCATCATTCTCATGCTTCTAGGGGTCCACCTAGGCCACTTAAACGTTTACTTCAGGGTCTTGATCCAAAGTCCACTGCCAATCTATTCAACAACTCAACATGCATAGGAGAGAAAACAGTAAACAATGTAGAGTGTTTCATTCTAAAACTTGAAGCAGAATCCACTTCATTACAAACAAGAAGCAGTAGCAACATAGAGATAATTGGTCACACAGTTTTAGGCTATTTCAGCCAAAGAACGGGACTTTTGGTTCAATTAGAAGACACCAACTTGATTAAACTAAAATCTTCTGAAACTGAATCCATATTTTGGGAAACAAATACAGAATCTCTCATACAAGACTATAGAATAGTGGATGGTATTCAAATAGCACATTGTGGGAAAACTTGGGTCACTTTATCAAGGTTTGGTGAAGGACCTGAGAATCATTCAAGGACAAGTATAAATGAGGTTTGGAAAATTGAGGAAGTTGATTTTAATATTAAAGGGTTGTCTTTGGATTGTTTTTTACCTCCTAGTGATTTGAAGAGAGATGAAGAAAAAGGAGTGGTTTCTGTTAGTAATGCTAAGTTACCATATAAAATTCAATCTGCTTCTTTTAAGATTAGTGCTTCCAAAGTAGCTGCTATTGATGTGGATGATTCATGTGTTAGTGATAACATTCAAGATATGTAG

Protein sequence

>Msa0738030

MKKLCPNLYHEDGLETVLEVPIPEDIFTNKSGTTWKNMKQWMKPNSESRSSRFEDPNTNIQLLLGVVGAPLIPFPITNEYKPIITRNIKGHNIEASMAKYIVKQYVAAVGGESVLNNVESMYAMGEVRIGTSEFVVGEGGVNSKKMVKKVKKVDMKEELGGFVLWQKRPELWCLELVVSGYKISAGSDGKVAWRQTPWHHSHASRGPPRPLKRLLQGLDPKSTANLFNNSTCIGEKTVNNVECFILKLEAESTSLQTRSSSNIEIIGHTVLGYFSQRTGLLVQLEDTNLIKLKSSETESIFWETNTESLIQDYRIVDGIQIAHCGKTWVTLSRFGEGPENHSRTSINEVWKIEEVDFNIKGLSLDCFLPPSDLKRDEEKGVVSVSNAKLPYKIQSASFKISASKVAAIDVDDSCVSDNIQDM*