AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1305350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305350 MtrunA17_Chr8g0374151 77.720 193 2 1 1 152 1 193 1.05e-102 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305350 AT5G66930.2 57.732 194 36 5 1 152 1 190 7.24e-66 200
Msa1305350 AT5G66930.3 71.831 142 35 4 12 152 89 226 1.88e-65 200
Msa1305350 AT5G66930.1 55.319 141 20 3 1 99 1 140 1.04e-41 137

Find 73 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATCAACTTGTATAATTT+TGG 0.124407 8_3:-68772421 Msa1305350:three_prime_UTR
TGATAGTAATTTAGTGTAAT+TGG 0.217983 8_3:-68774680 Msa1305350:five_prime_UTR
CGATGTGTTGTTGTCTTTAA+AGG 0.223217 8_3:-68772465 Msa1305350:three_prime_UTR
CAAACTTCACAGTTCATAAT+TGG 0.236403 8_3:+68774462 None:intergenic
CAAAGTGCCGATTACTTCTA+TGG 0.281070 8_3:+68774613 None:intergenic
AGGCATCTTGGTTCAGTAAC+AGG 0.296164 8_3:-68773006 Msa1305350:CDS
ACAAGTTAATACAAATTAAA+TGG 0.300895 8_3:+68774657 None:intergenic
CAGGATTGAACGTTTGTATT+GGG 0.340721 8_3:-68772987 Msa1305350:CDS
TTATTTGGTTTGCACTTGAA+TGG 0.357360 8_3:+68772253 None:intergenic
GGATGAAACCCTAGGTTGAT+TGG 0.361003 8_3:+68774483 None:intergenic
GAAATAGCACCCTCTAGATT+TGG 0.369910 8_3:+68772639 None:intergenic
GGATGACTGTTCTGCTTTGT+TGG 0.374728 8_3:-68772504 Msa1305350:three_prime_UTR
GATGAAACCCTAGGTTGATT+GGG 0.376517 8_3:+68774484 None:intergenic
GAGAACTGTACGAAACTATT+AGG 0.382655 8_3:-68772306 Msa1305350:three_prime_UTR
AGTTCTCCTTTATGTTTGAT+AGG 0.386226 8_3:+68772322 None:intergenic
AATTGAGCAGTTTATTTGTT+GGG 0.392401 8_3:-68773902 Msa1305350:CDS
GTGCGTGTGAAGGGTTTAGA+AGG 0.402131 8_3:+68774554 None:intergenic
CATTCTAAATTTGTTGATCC+AGG 0.409933 8_3:-68772902 Msa1305350:CDS
TTCTTTGGGAAATCAGATAT+AGG 0.412917 8_3:-68772385 Msa1305350:three_prime_UTR
TAATTACAACGGGATATGAT+TGG 0.415458 8_3:+68772569 None:intergenic
ACAGGATTGAACGTTTGTAT+TGG 0.421210 8_3:-68772988 Msa1305350:CDS
GGCAATATAAACTACAATAT+AGG 0.425910 8_3:+68772275 None:intergenic
AATGTATGAGAGAAAATTAG+AGG 0.433111 8_3:-68772160 Msa1305350:three_prime_UTR
CCCTCTAGATTTGGTATTGG+CGG 0.433639 8_3:+68772648 None:intergenic
TAAACATACCTAGGACAGTT+TGG 0.434428 8_3:-68772124 Msa1305350:three_prime_UTR
TATTTGGTTTGCACTTGAAT+GGG 0.453048 8_3:+68772254 None:intergenic
ATTCATGACCAAACTGTCCT+AGG 0.460668 8_3:+68772116 None:intergenic
CTAGGTATTGTAATTTCATA+CGG 0.474349 8_3:+68772612 None:intergenic
GCACCCTCTAGATTTGGTAT+TGG 0.474637 8_3:+68772645 None:intergenic
AAATTGAGCAGTTTATTTGT+TGG 0.479900 8_3:-68773903 Msa1305350:CDS
ATGAGATGCATAATTACAAC+GGG 0.480053 8_3:+68772559 None:intergenic
GAAATCAGATATAGGATTCA+AGG 0.482038 8_3:-68772377 Msa1305350:three_prime_UTR
ATTGCAACCATAGAAGTAAT+CGG 0.484851 8_3:-68774620 Msa1305350:five_prime_UTR
TAGAATGCGATTTCAACTGC+TGG 0.486426 8_3:+68772936 None:intergenic
GATTTGCCTATCAAACATAA+AGG 0.487879 8_3:-68772328 Msa1305350:three_prime_UTR
AACGTTTGTATTGGGAGCAA+TGG 0.491465 8_3:-68772979 Msa1305350:CDS
AAATTATACAAGTTGATGTA+TGG 0.495983 8_3:+68772424 None:intergenic
TATATCTGATTTCCCAAAGA+AGG 0.496986 8_3:+68772387 None:intergenic
AATTACAACGGGATATGATT+GGG 0.497946 8_3:+68772570 None:intergenic
TAAATTCGTCAACGAGAAGA+AGG 0.500734 8_3:-68772679 Msa1305350:CDS
GATATGCTTATCTTTCTATG+AGG 0.522607 8_3:-68773041 Msa1305350:CDS
GGTGCAATGTGGAGAGGTGG+AGG 0.545332 8_3:-68773947 Msa1305350:CDS
AGGAATAGCGTGCGTGTGAA+GGG 0.547622 8_3:+68774545 None:intergenic
GAGGAATAGCGTGCGTGTGA+AGG 0.552519 8_3:+68774544 None:intergenic
TGAGCAGTTTATTTGTTGGG+TGG 0.552749 8_3:-68773899 Msa1305350:CDS
ATGAAACCCTAGGTTGATTG+GGG 0.564707 8_3:+68774485 None:intergenic
TCATAATTGGATGAAACCCT+AGG 0.567267 8_3:+68774475 None:intergenic
CGTGTGGATCGGAGAAGAAG+AGG 0.567756 8_3:+68774525 None:intergenic
CTTATTGAGTAAACATACCT+AGG 0.570266 8_3:-68772133 Msa1305350:three_prime_UTR
ACTTCTATGGTTGCAATCAG+AGG 0.571707 8_3:+68774626 None:intergenic
AGTTATATACGAGTTCTTTG+AGG 0.572020 8_3:+68774436 None:intergenic
CTCATGAGTAGATGGAACAT+TGG 0.573528 8_3:-68772766 Msa1305350:intron
ATGAGTAGATGGAACATTGG+AGG 0.574356 8_3:-68772763 Msa1305350:intron
TGGATATGAGAATGCTAAGG+TGG 0.575908 8_3:-68772221 Msa1305350:three_prime_UTR
TATATACGAGTTCTTTGAGG+TGG 0.577021 8_3:+68774439 None:intergenic
GGAGGAGTGATCGTGTGGAT+CGG 0.578711 8_3:+68774514 None:intergenic
GAAGAGGAGGAGTGATCGTG+TGG 0.585535 8_3:+68774509 None:intergenic
AGAATGCGATTTCAACTGCT+GGG 0.602143 8_3:+68772937 None:intergenic
TTTGTTGTGTAGGTGCAATG+TGG 0.609270 8_3:-68773958 Msa1305350:intron
TCTAAATTTGTTGATCCAGG+AGG 0.611659 8_3:-68772899 Msa1305350:intron
CGTATGAAATTACAATACCT+AGG 0.614228 8_3:-68772611 Msa1305350:CDS
TGTGTAGGTGCAATGTGGAG+AGG 0.615453 8_3:-68773953 Msa1305350:intron
GTAGGTGCAATGTGGAGAGG+TGG 0.624583 8_3:-68773950 Msa1305350:intron
TCCGCCAATACCAAATCTAG+AGG 0.635248 8_3:-68772649 Msa1305350:CDS
TAGTGGATATGAGAATGCTA+AGG 0.642903 8_3:-68772224 Msa1305350:three_prime_UTR
TATGAGATGCATAATTACAA+CGG 0.645493 8_3:+68772558 None:intergenic
ACTTGAAGTAGCACTTCGTG+AGG 0.649855 8_3:-68772718 Msa1305350:CDS
CCGCCAATACCAAATCTAGA+GGG 0.660550 8_3:-68772648 Msa1305350:CDS
AGAGTATACAGATCTTACCT+AGG 0.671659 8_3:+68772594 None:intergenic
GTGGATGAACAAATTGCTTG+TGG 0.682888 8_3:-68772355 Msa1305350:three_prime_UTR
GAAACCCTAGGTTGATTGGG+GGG 0.698746 8_3:+68774487 None:intergenic
ATCAGATATAGGATTCAAGG+TGG 0.706606 8_3:-68772374 Msa1305350:three_prime_UTR
TGAAACCCTAGGTTGATTGG+GGG 0.712352 8_3:+68774486 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGACAAAATAAATAAATAA+TGG + chr8_3:68773093-68773112 None:intergenic 10.0%
!! AATTTAAGTATAAAATCATA+CGG - chr8_3:68773219-68773238 Msa1305350:intron 10.0%
!! ACAAGTTAATACAAATTAAA+TGG + chr8_3:68772162-68772181 None:intergenic 15.0%
!! AAATTGAAAAATGATTAAGA+AGG + chr8_3:68772454-68772473 None:intergenic 15.0%
!!! ATATTTTGATATCTTTGATT+CGG - chr8_3:68774291-68774310 Msa1305350:intron 15.0%
!! TGATAGTAATTTAGTGTAAT+TGG - chr8_3:68772136-68772155 Msa1305350:three_prime_UTR 20.0%
!!! TAATCATTTTTCAATTTTGC+AGG - chr8_3:68772457-68772476 Msa1305350:three_prime_UTR 20.0%
!! TTGAAATAAAAAACGTACAT+AGG + chr8_3:68772600-68772619 None:intergenic 20.0%
!!! TTTGTCTAAATACATCATTT+TGG - chr8_3:68773105-68773124 Msa1305350:intron 20.0%
!!! CATTTTTTATATCTTTGAGT+CGG - chr8_3:68773132-68773151 Msa1305350:intron 20.0%
!! AATGTTGATGTAAAATAAAC+AGG - chr8_3:68773683-68773702 Msa1305350:intron 20.0%
!! TGTAAAATAAACAGGAATAT+AGG - chr8_3:68773691-68773710 Msa1305350:intron 20.0%
!! GTAAAATAAACAGGAATATA+GGG - chr8_3:68773692-68773711 Msa1305350:intron 20.0%
!!! TTGTAATCAAGTTTTCTTAT+TGG - chr8_3:68773732-68773751 Msa1305350:intron 20.0%
!!! TGTAATCAAGTTTTCTTATT+GGG - chr8_3:68773733-68773752 Msa1305350:intron 20.0%
!!! AAATTATACAAGTTGATGTA+TGG + chr8_3:68774395-68774414 None:intergenic 20.0%
!!! TACATCAACTTGTATAATTT+TGG - chr8_3:68774395-68774414 Msa1305350:intron 20.0%
!!! TCCAAGAAAATATTAGTTTT+TGG - chr8_3:68774629-68774648 Msa1305350:five_prime_UTR 20.0%
!!! TCCAAAAACTAATATTTTCT+TGG + chr8_3:68774633-68774652 None:intergenic 20.0%
! TTGAATGTAATCACATTTGT+CGG - chr8_3:68772727-68772746 Msa1305350:CDS 25.0%
!!! CATTTCAATTTCCAGTTTTT+TGG - chr8_3:68772818-68772837 Msa1305350:intron 25.0%
! AAATTGAGCAGTTTATTTGT+TGG - chr8_3:68772913-68772932 Msa1305350:CDS 25.0%
! AATTGAGCAGTTTATTTGTT+GGG - chr8_3:68772914-68772933 Msa1305350:CDS 25.0%
! TGTATGATCTTCTTTAAACA+TGG + chr8_3:68773274-68773293 None:intergenic 25.0%
!! GATTTGCTTATCAAACATAA+AGG - chr8_3:68773332-68773351 Msa1305350:intron 25.0%
!! AGAATTTAGTTTATCGAACA+AGG + chr8_3:68773955-68773974 None:intergenic 25.0%
!! CTAGGTATTGTAATTTCATA+CGG + chr8_3:68774207-68774226 None:intergenic 25.0%
! TATGAGATGCATAATTACAA+CGG + chr8_3:68774261-68774280 None:intergenic 25.0%
! GGCAATATAAACTACAATAT+AGG + chr8_3:68774544-68774563 None:intergenic 25.0%
!! AAACCAAATAAAAAGTGTAG+TGG - chr8_3:68774575-68774594 Msa1305350:five_prime_UTR 25.0%
!!! TATCCACTACACTTTTTATT+TGG + chr8_3:68774581-68774600 None:intergenic 25.0%
! AATGTATGAGAGAAAATTAG+AGG - chr8_3:68774656-68774675 Msa1305350:five_prime_UTR 25.0%
ATTGCAACCATAGAAGTAAT+CGG - chr8_3:68772196-68772215 Msa1305350:three_prime_UTR 30.0%
CAAACTTCACAGTTCATAAT+TGG + chr8_3:68772357-68772376 None:intergenic 30.0%
AGTTATATACGAGTTCTTTG+AGG + chr8_3:68772383-68772402 None:intergenic 30.0%
GAAAAATGATTAAGAAGGAG+AGG + chr8_3:68772449-68772468 None:intergenic 30.0%
TAATGGTGTGCAATATACAT+CGG + chr8_3:68772514-68772533 None:intergenic 30.0%
AGCACAATTTACCAAAAAAC+TGG + chr8_3:68772832-68772851 None:intergenic 30.0%
!!! TGCTAAGTTTTTTGTTGTGT+AGG - chr8_3:68772848-68772867 Msa1305350:intron 30.0%
!! ATTTAGTGTCAGTTCTAGAT+TGG - chr8_3:68773029-68773048 Msa1305350:CDS 30.0%
TACGGCAAGTTGTATAATTA+TGG - chr8_3:68773237-68773256 Msa1305350:intron 30.0%
ATCATACATGTGATTCAAGA+TGG - chr8_3:68773286-68773305 Msa1305350:intron 30.0%
GATTTGCCTATCAAACATAA+AGG - chr8_3:68773367-68773386 Msa1305350:intron 30.0%
ACTTCTCCTTTATGTTTGAT+AGG + chr8_3:68773341-68773360 None:intergenic 30.0%
AAAGATGTGAAAAATCACCT+AGG - chr8_3:68773531-68773550 Msa1305350:intron 30.0%
TAACATGACTAAATCATCCT+AGG + chr8_3:68773551-68773570 None:intergenic 30.0%
GATATGCTTATCTTTCTATG+AGG - chr8_3:68773775-68773794 Msa1305350:intron 30.0%
CTATGAGGTTAAAAACAAAC+AGG - chr8_3:68773790-68773809 Msa1305350:intron 30.0%
TTAAAAACAAACAGGCATCT+TGG - chr8_3:68773798-68773817 Msa1305350:intron 30.0%
!! CATTCTAAATTTGTTGATCC+AGG - chr8_3:68773914-68773933 Msa1305350:CDS 30.0%
AAGTGACAAATAAAGAGTGA+GGG + chr8_3:68774019-68774038 None:intergenic 30.0%
AAAGTGACAAATAAAGAGTG+AGG + chr8_3:68774020-68774039 None:intergenic 30.0%
CGTATGAAATTACAATACCT+AGG - chr8_3:68774205-68774224 Msa1305350:intron 30.0%
AATTACAACGGGATATGATT+GGG + chr8_3:68774249-68774268 None:intergenic 30.0%
TAATTACAACGGGATATGAT+TGG + chr8_3:68774250-68774269 None:intergenic 30.0%
ATGAGATGCATAATTACAAC+GGG + chr8_3:68774260-68774279 None:intergenic 30.0%
! GTATCTTTTGATCCTTCTTT+GGG - chr8_3:68774417-68774436 Msa1305350:intron 30.0%
TATATCTGATTTCCCAAAGA+AGG + chr8_3:68774432-68774451 None:intergenic 30.0%
! TTCTTTGGGAAATCAGATAT+AGG - chr8_3:68774431-68774450 Msa1305350:intron 30.0%
GAAATCAGATATAGGATTCA+AGG - chr8_3:68774439-68774458 Msa1305350:intron 30.0%
GATTTGCCTATCAAACATAA+AGG - chr8_3:68773367-68773386 Msa1305350:intron 30.0%
AGTTCTCCTTTATGTTTGAT+AGG + chr8_3:68774497-68774516 None:intergenic 30.0%
!! TATTTGGTTTGCACTTGAAT+GGG + chr8_3:68774565-68774584 None:intergenic 30.0%
!! TTATTTGGTTTGCACTTGAA+TGG + chr8_3:68774566-68774585 None:intergenic 30.0%
CTTATTGAGTAAACATACCT+AGG - chr8_3:68774683-68774702 Msa1305350:five_prime_UTR 30.0%
TCATAATTGGATGAAACCCT+AGG + chr8_3:68772344-68772363 None:intergenic 35.0%
! TATATACGAGTTCTTTGAGG+TGG + chr8_3:68772380-68772399 None:intergenic 35.0%
TGCGAATAGTAGAAAAAAGG+GGG + chr8_3:68772426-68772445 None:intergenic 35.0%
GTGCGAATAGTAGAAAAAAG+GGG + chr8_3:68772427-68772446 None:intergenic 35.0%
GGTGCGAATAGTAGAAAAAA+GGG + chr8_3:68772428-68772447 None:intergenic 35.0%
AGGTGCGAATAGTAGAAAAA+AGG + chr8_3:68772429-68772448 None:intergenic 35.0%
TAACGCACGATGGAAAATAA+TGG + chr8_3:68772531-68772550 None:intergenic 35.0%
! ATTATTTTCCATCGTGCGTT+AGG - chr8_3:68772530-68772549 Msa1305350:three_prime_UTR 35.0%
AGTTCCAAGTCTACATCTTT+GGG + chr8_3:68772566-68772585 None:intergenic 35.0%
ACATCCAAACAAAAAGAGTC+AGG - chr8_3:68772944-68772963 Msa1305350:CDS 35.0%
! CTAACCTGACTCTTTTTGTT+TGG + chr8_3:68772951-68772970 None:intergenic 35.0%
TCAGGTTAGATATTTGCTTG+TGG - chr8_3:68772962-68772981 Msa1305350:CDS 35.0%
! TGCTTGTGGATTTTTACTCT+TGG - chr8_3:68772976-68772995 Msa1305350:CDS 35.0%
! GCTTGTGGATTTTTACTCTT+GGG - chr8_3:68772977-68772996 Msa1305350:CDS 35.0%
CGATGTGATGTTGTCTATAA+AGG - chr8_3:68773193-68773212 Msa1305350:intron 35.0%
!! GCAAATCAAATAAAGTGCTG+TGG - chr8_3:68773412-68773431 Msa1305350:intron 35.0%
!! AGTCCAATGGCTTTAATGAA+AGG - chr8_3:68773573-68773592 Msa1305350:intron 35.0%
ACTCCTTTCATTAAAGCCAT+TGG + chr8_3:68773579-68773598 None:intergenic 35.0%
!! AATGGCTTTAATGAAAGGAG+TGG - chr8_3:68773578-68773597 Msa1305350:intron 35.0%
AATAAACAGGAATATAGGGC+AGG - chr8_3:68773696-68773715 Msa1305350:intron 35.0%
ATAAACAGGAATATAGGGCA+GGG - chr8_3:68773697-68773716 Msa1305350:intron 35.0%
ACAGGATTGAACGTTTGTAT+TGG - chr8_3:68773828-68773847 Msa1305350:intron 35.0%
CAGGATTGAACGTTTGTATT+GGG - chr8_3:68773829-68773848 Msa1305350:intron 35.0%
!! TCTAAATTTGTTGATCCAGG+AGG - chr8_3:68773917-68773936 Msa1305350:CDS 35.0%
TCGTATTTCTCATGAGTAGA+TGG - chr8_3:68774042-68774061 Msa1305350:intron 35.0%
TAAATTCGTCAACGAGAAGA+AGG - chr8_3:68774137-68774156 Msa1305350:intron 35.0%
AGAGTATACAGATCTTACCT+AGG + chr8_3:68774225-68774244 None:intergenic 35.0%
! CGATGTGTTGTTGTCTTTAA+AGG - chr8_3:68774351-68774370 Msa1305350:intron 35.0%
! GGTATCTTTTGATCCTTCTT+TGG - chr8_3:68774416-68774435 Msa1305350:intron 35.0%
ATCAGATATAGGATTCAAGG+TGG - chr8_3:68774442-68774461 Msa1305350:intron 35.0%
GAGAACTGTACGAAACTATT+AGG - chr8_3:68774510-68774529 Msa1305350:five_prime_UTR 35.0%
! TAGTGGATATGAGAATGCTA+AGG - chr8_3:68774592-68774611 Msa1305350:five_prime_UTR 35.0%
TAAACATACCTAGGACAGTT+TGG - chr8_3:68774692-68774711 Msa1305350:five_prime_UTR 35.0%
ACTTCTATGGTTGCAATCAG+AGG + chr8_3:68772193-68772212 None:intergenic 40.0%
!! CAAAGTGCCGATTACTTCTA+TGG + chr8_3:68772206-68772225 None:intergenic 40.0%
!! ATGAAACCCTAGGTTGATTG+GGG + chr8_3:68772334-68772353 None:intergenic 40.0%
!! GATGAAACCCTAGGTTGATT+GGG + chr8_3:68772335-68772354 None:intergenic 40.0%
GCGAATAGTAGAAAAAAGGG+GGG + chr8_3:68772425-68772444 None:intergenic 40.0%
GAGTTCCAAGTCTACATCTT+TGG + chr8_3:68772567-68772586 None:intergenic 40.0%
! GGTGCTACAAAGATTGTGAT+AGG + chr8_3:68772631-68772650 None:intergenic 40.0%
! ACACTTTCGATCAGAAGTGT+CGG + chr8_3:68772652-68772671 None:intergenic 40.0%
! ACACTTCTGATCGAAAGTGT+CGG - chr8_3:68772652-68772671 Msa1305350:CDS 40.0%
TTGTACCACCTTATGATCGA+AGG + chr8_3:68772777-68772796 None:intergenic 40.0%
! TTTGTTGTGTAGGTGCAATG+TGG - chr8_3:68772858-68772877 Msa1305350:intron 40.0%
! TGAGCAGTTTATTTGTTGGG+TGG - chr8_3:68772917-68772936 Msa1305350:CDS 40.0%
CTGTGGATATGAGAATGCTA+AGG - chr8_3:68773429-68773448 Msa1305350:intron 40.0%
TGGATATGAGAATGCTAAGG+TGG - chr8_3:68773432-68773451 Msa1305350:intron 40.0%
TAGTCATGTTAGCAGTCCAA+TGG - chr8_3:68773560-68773579 Msa1305350:intron 40.0%
!! GGAGTGGAGTACTCTTTTAT+TGG - chr8_3:68773594-68773613 Msa1305350:intron 40.0%
AACGTTTGTATTGGGAGCAA+TGG - chr8_3:68773837-68773856 Msa1305350:intron 40.0%
AGAATGCGATTTCAACTGCT+GGG + chr8_3:68773882-68773901 None:intergenic 40.0%
TAGAATGCGATTTCAACTGC+TGG + chr8_3:68773883-68773902 None:intergenic 40.0%
CTCATGAGTAGATGGAACAT+TGG - chr8_3:68774050-68774069 Msa1305350:intron 40.0%
ATGAGTAGATGGAACATTGG+AGG - chr8_3:68774053-68774072 Msa1305350:intron 40.0%
GAAATAGCACCCTCTAGATT+TGG + chr8_3:68774180-68774199 None:intergenic 40.0%
GTGGATGAACAAATTGCTTG+TGG - chr8_3:68774461-68774480 Msa1305350:exon 40.0%
TGGATATGAGAATGCTAAGG+TGG - chr8_3:68773432-68773451 Msa1305350:intron 40.0%
ATTCATGACCAAACTGTCCT+AGG + chr8_3:68774703-68774722 None:intergenic 40.0%
!! TGAAACCCTAGGTTGATTGG+GGG + chr8_3:68772333-68772352 None:intergenic 45.0%
!! GGATGAAACCCTAGGTTGAT+TGG + chr8_3:68772336-68772355 None:intergenic 45.0%
ACATTTGTCGGTCTCCAACA+CGG - chr8_3:68772739-68772758 Msa1305350:CDS 45.0%
CCCTAACTATGTGAACACAG+CGG + chr8_3:68773005-68773024 None:intergenic 45.0%
CCGCTGTGTTCACATAGTTA+GGG - chr8_3:68773002-68773021 Msa1305350:CDS 45.0%
GAATGATCGTTCTGCTTGGT+TGG - chr8_3:68773154-68773173 Msa1305350:intron 45.0%
AGGCATCTTGGTTCAGTAAC+AGG - chr8_3:68773810-68773829 Msa1305350:intron 45.0%
AGGAAAGAAACTTCACCTCC+TGG + chr8_3:68773935-68773954 None:intergenic 45.0%
ACTGTGCAAGTAGTTCCTTC+TGG - chr8_3:68773991-68774010 Msa1305350:intron 45.0%
ACTTGAAGTAGCACTTCGTG+AGG - chr8_3:68774098-68774117 Msa1305350:intron 45.0%
TCCGCCAATACCAAATCTAG+AGG - chr8_3:68774167-68774186 Msa1305350:intron 45.0%
! CCCTCTAGATTTGGTATTGG+CGG + chr8_3:68774171-68774190 None:intergenic 45.0%
CCGCCAATACCAAATCTAGA+GGG - chr8_3:68774168-68774187 Msa1305350:intron 45.0%
! GCACCCTCTAGATTTGGTAT+TGG + chr8_3:68774174-68774193 None:intergenic 45.0%
GGATGACTGTTCTGCTTTGT+TGG - chr8_3:68774312-68774331 Msa1305350:intron 45.0%
GTGCGTGTGAAGGGTTTAGA+AGG + chr8_3:68772265-68772284 None:intergenic 50.0%
AGGAATAGCGTGCGTGTGAA+GGG + chr8_3:68772274-68772293 None:intergenic 50.0%
TCTTCCCCCCAATCAACCTA+GGG - chr8_3:68772325-68772344 Msa1305350:three_prime_UTR 50.0%
!! GAAACCCTAGGTTGATTGGG+GGG + chr8_3:68772332-68772351 None:intergenic 50.0%
GTAGAAAAAAGGGGGGTGAG+AGG + chr8_3:68772418-68772437 None:intergenic 50.0%
GCGTCCCAAAGATGTAGACT+TGG - chr8_3:68772559-68772578 Msa1305350:three_prime_UTR 50.0%
!! CTGATCGAAAGTGTCGGTGT+TGG - chr8_3:68772658-68772677 Msa1305350:CDS 50.0%
TGGACACGCCTTCGATCATA+AGG - chr8_3:68772766-68772785 Msa1305350:intron 50.0%
ACACGCCTTCGATCATAAGG+TGG - chr8_3:68772769-68772788 Msa1305350:intron 50.0%
TGTGTAGGTGCAATGTGGAG+AGG - chr8_3:68772863-68772882 Msa1305350:intron 50.0%
GCCGCTGTGTTCACATAGTT+AGG - chr8_3:68773001-68773020 Msa1305350:CDS 50.0%
GTCGGAATGATCGTTCTGCT+TGG - chr8_3:68773150-68773169 Msa1305350:intron 50.0%
!! TAAAGAGTGAGGGTGCCAGA+AGG + chr8_3:68774009-68774028 None:intergenic 50.0%
GAGGAATAGCGTGCGTGTGA+AGG + chr8_3:68772275-68772294 None:intergenic 55.0%
CGTGTGGATCGGAGAAGAAG+AGG + chr8_3:68772294-68772313 None:intergenic 55.0%
GGAGGAGTGATCGTGTGGAT+CGG + chr8_3:68772305-68772324 None:intergenic 55.0%
GAAGAGGAGGAGTGATCGTG+TGG + chr8_3:68772310-68772329 None:intergenic 55.0%
!! CTAGGTTGATTGGGGGGAAG+AGG + chr8_3:68772326-68772345 None:intergenic 55.0%
CTCTTCCCCCCAATCAACCT+AGG - chr8_3:68772324-68772343 Msa1305350:three_prime_UTR 55.0%
GCACAAGACCTAACGCACGA+TGG + chr8_3:68772541-68772560 None:intergenic 55.0%
TCGGTCTCCAACACGGATAC+TGG - chr8_3:68772746-68772765 Msa1305350:CDS 55.0%
GTAGGTGCAATGTGGAGAGG+TGG - chr8_3:68772866-68772885 Msa1305350:intron 55.0%
GGTTGATTGGGGGGAAGAGG+AGG + chr8_3:68772323-68772342 None:intergenic 60.0%
GGCGTGTCCAGTATCCGTGT+TGG + chr8_3:68772756-68772775 None:intergenic 60.0%
GGTGCAATGTGGAGAGGTGG+AGG - chr8_3:68772869-68772888 Msa1305350:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 68772102 68774736 68772102 ID=Msa1305350;Name=Msa1305350
chr8_3 mRNA 68772102 68774736 68772102 ID=Msa1305350-mRNA-1;Parent=Msa1305350;Name=Msa1305350-mRNA-1;_AED=0.19;_eAED=0.19;_QI=258|0.66|1|1|0.66|0.75|4|506|153
chr8_3 exon 68772102 68772777 68772102 ID=Msa1305350-mRNA-1:exon:21304;Parent=Msa1305350-mRNA-1
chr8_3 exon 68772900 68773062 68772900 ID=Msa1305350-mRNA-1:exon:21303;Parent=Msa1305350-mRNA-1
chr8_3 exon 68773873 68773968 68773873 ID=Msa1305350-mRNA-1:exon:21302;Parent=Msa1305350-mRNA-1
chr8_3 exon 68774446 68774736 68774446 ID=Msa1305350-mRNA-1:exon:21301;Parent=Msa1305350-mRNA-1
chr8_3 five_prime_UTR 68774479 68774736 68774479 ID=Msa1305350-mRNA-1:five_prime_utr;Parent=Msa1305350-mRNA-1
chr8_3 CDS 68774446 68774478 68774446 ID=Msa1305350-mRNA-1:cds;Parent=Msa1305350-mRNA-1
chr8_3 CDS 68773873 68773968 68773873 ID=Msa1305350-mRNA-1:cds;Parent=Msa1305350-mRNA-1
chr8_3 CDS 68772900 68773062 68772900 ID=Msa1305350-mRNA-1:cds;Parent=Msa1305350-mRNA-1
chr8_3 CDS 68772608 68772777 68772608 ID=Msa1305350-mRNA-1:cds;Parent=Msa1305350-mRNA-1
chr8_3 three_prime_UTR 68772102 68772607 68772102 ID=Msa1305350-mRNA-1:three_prime_utr;Parent=Msa1305350-mRNA-1
Gene Sequence

>Msa1305350

ATGAACTGTGAAGTTTGCCACCTCAAAGAACTCGTGCAATGTGGAGAGGTGGAGGTTGAAAACAAAATAGAAGAGAAAATTGAGCAGTTTATTTGTTGGGTGGAGAAACATCCAAACAAAAAGAGTCAGATATGCTTATCTTTCTATGAGGTTAAAAACAAACAGGCATCTTGGTTCAGTAACAGGATTGAACGTTTGTATTGGGAGCAATGGTATATTAATCTGAATGTAGCCCAGCAGTTGAAATCGCATTCTAGCAAATCTCATCATTCTAAATTTGTTGATCCAGGAGATGGAACATTGGAGGATAGAAATGCTCGAAGTGCAGCACTTGAAGTAGCACTTCGTGAGGTTTTATTTCAAATAATTAAATTCGTCAACGAGAAGAAGGATCATGTTCCGCCAATACCAAATCTAGAGGGTGCTATTTCTTTTCCGTATGAAATTACAATACCTAGGTAA

Protein sequence

>Msa1305350

MNCEVCHLKELVQCGEVEVENKIEEKIEQFICWVEKHPNKKSQICLSFYEVKNKQASWFSNRIERLYWEQWYINLNVAQQLKSHSSKSHHSKFVDPGDGTLEDRNARSAALEVALREVLFQIIKFVNEKKDHVPPIPNLEGAISFPYEITIPR*