AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518380 MtrunA17_Chr3g0130561 100.000 217 0 0 1 217 1 217 3.24e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518380 AT5G09260.1 78.539 219 42 3 1 217 1 216 6.78e-117 332
Msa0518380 AT5G63880.1 74.091 220 53 2 1 217 1 219 5.55e-112 320
Msa0518380 AT5G63880.2 66.803 244 53 3 1 217 1 243 3.35e-106 306

Find 62 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGAGAATTGAAAT+TGG 0.195549 3_4:+70223067 None:intergenic
AGAAGATGAAGAGGAGATTT+TGG 0.201044 3_4:-70221280 Msa0518380:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 3_4:-70221670 Msa0518380:CDS
CTGTTGCCTCATGCAGTTAC+TGG 0.256201 3_4:-70219755 Msa0518380:three_prime_UTR
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 3_4:+70222938 None:intergenic
GTAAAATTGTTTCACTCCTT+TGG 0.289606 3_4:+70219612 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 3_4:+70221626 None:intergenic
AAATATGTGAGGGACAAATA+AGG 0.309245 3_4:+70223174 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 3_4:-70221604 Msa0518380:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 3_4:+70220088 None:intergenic
AAAAGATGAGAATTGAAATT+GGG 0.381225 3_4:+70223068 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 3_4:-70221262 Msa0518380:CDS
CTTTCCATTTCTATTTGATA+AGG 0.391434 3_4:-70219668 Msa0518380:three_prime_UTR
GTCGTTTCCAACAGCAGTTT+CGG 0.399899 3_4:+70223119 None:intergenic
GGTGCCTTGGTTGGAACATC+AGG 0.402386 3_4:+70220037 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 3_4:-70222140 Msa0518380:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 3_4:-70221318 Msa0518380:CDS
CGATCTACGTCCGTTACCTT+AGG 0.414802 3_4:+70222982 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 3_4:+70220016 None:intergenic
GAAACCTTATCAAATAGAAA+TGG 0.429916 3_4:+70219664 None:intergenic
ATGCACACACTATTTATTTG+AGG 0.444815 3_4:-70219528 Msa0518380:three_prime_UTR
AATATGTGAGGGACAAATAA+GGG 0.468508 3_4:+70223175 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 3_4:-70221317 Msa0518380:CDS
AATGTATAATGACTTGAGAA+TGG 0.471290 3_4:-70219556 Msa0518380:three_prime_UTR
TTGCTCAACATTTATAAGCC+AGG 0.478759 3_4:+70222069 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 3_4:+70222939 None:intergenic
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 3_4:-70221666 Msa0518380:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 3_4:-70219873 Msa0518380:intron
GCAAACCAAAGTGTAGCATC+TGG 0.514076 3_4:-70219808 Msa0518380:three_prime_UTR
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 3_4:+70220024 None:intergenic
ATTTACAAATCGAAATCGAT+GGG 0.515535 3_4:-70223024 Msa0518380:exon
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 3_4:-70222150 Msa0518380:CDS
GGGTATTTGTGTAAAGTGAC+AGG 0.521083 3_4:-70223301 None:intergenic
TGACAAGGTTGACGAAAAGT+TGG 0.521454 3_4:-70220065 Msa0518380:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 3_4:-70222926 Msa0518380:intron
ATTATCAGCAGAAGATGAAG+AGG 0.529769 3_4:-70221289 Msa0518380:CDS
AAACAGACCGAAACTGCTGT+TGG 0.545151 3_4:-70223126 Msa0518380:five_prime_UTR
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 3_4:+70220028 None:intergenic
AGTGACAGGAAACAACTCTC+TGG 0.553316 3_4:-70223287 Msa0518380:five_prime_UTR
AGAAAGAGAGAAATATGTGA+GGG 0.553808 3_4:+70223164 None:intergenic
AATTTACAAATCGAAATCGA+TGG 0.565183 3_4:-70223025 Msa0518380:exon
GAAGACCAGATGCTACACTT+TGG 0.566982 3_4:+70219803 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 3_4:+70219857 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 3_4:-70222087 Msa0518380:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 3_4:+70220079 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 3_4:-70221316 Msa0518380:CDS
TATATTCGTGAAGAAACCTA+AGG 0.587486 3_4:-70222998 Msa0518380:CDS
AAGAAAGAGAGAAATATGTG+AGG 0.591113 3_4:+70223163 None:intergenic
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 3_4:-70222149 Msa0518380:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 3_4:+70222126 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 3_4:-70221691 Msa0518380:CDS
TTCGATTTGTAAATTCGATG+AGG 0.607402 3_4:+70223033 None:intergenic
TCCTAGCACAGTTCCTGACA+AGG 0.608316 3_4:-70220080 Msa0518380:CDS
TGAGGCAACAGAATTGATAG+TGG 0.610237 3_4:+70219767 None:intergenic
GTTTGAGAACTTGGAAACCC+AGG 0.622553 3_4:-70221253 Msa0518380:intron
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 3_4:-70222992 Msa0518380:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 3_4:+70220009 None:intergenic
AAAACTCCAGTAACTGCATG+AGG 0.644252 3_4:+70219749 None:intergenic
CCTTCCTGATGTTCCAACCA+AGG 0.677701 3_4:-70220041 Msa0518380:CDS
CCTTGGTTGGAACATCAGGA+AGG 0.680222 3_4:+70220041 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 3_4:-70219882 Msa0518380:intron
TTTACAAATCGAAATCGATG+GGG 0.717126 3_4:-70223023 Msa0518380:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATTTTATTTTCTT+TGG + chr3_4:70222895-70222914 None:intergenic 10.0%
!!! TTTTCTGATAATTACTTATT+AGG - chr3_4:70219979-70219998 Msa0518380:intron 15.0%
!! TTTCTGATAATTACTTATTA+GGG - chr3_4:70219980-70219999 Msa0518380:intron 15.0%
!! TCAAGAATTGTAATAAATAT+CGG - chr3_4:70220230-70220249 Msa0518380:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG + chr3_4:70220310-70220329 None:intergenic 15.0%
!!! TAATATAGTGTTTTAGATTT+TGG - chr3_4:70220521-70220540 Msa0518380:intron 15.0%
!! TTTATATTCATGTTAAAAGA+GGG + chr3_4:70221054-70221073 None:intergenic 15.0%
!! ATTTATATTCATGTTAAAAG+AGG + chr3_4:70221055-70221074 None:intergenic 15.0%
!! GCATATATATATATATATAG+AGG - chr3_4:70221702-70221721 Msa0518380:CDS 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG + chr3_4:70222018-70222037 None:intergenic 15.0%
!!! TTATTTTGAGATTTTTCAAT+CGG + chr3_4:70222074-70222093 None:intergenic 15.0%
!! AAATTAGGAATATGATATAA+AGG - chr3_4:70222612-70222631 Msa0518380:intron 15.0%
!!! TTTTTTAGTTTTTTCTGTTG+AGG + chr3_4:70219733-70219752 None:intergenic 20.0%
!! AAAAGATGAGAATTGAAATT+GGG + chr3_4:70219756-70219775 None:intergenic 20.0%
!! AATAACAGATATGAAATTGA+GGG + chr3_4:70219936-70219955 None:intergenic 20.0%
!! ATGGACTTATATGTATAAAT+AGG - chr3_4:70220116-70220135 Msa0518380:intron 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG - chr3_4:70220822-70220841 Msa0518380:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG + chr3_4:70221085-70221104 None:intergenic 20.0%
!!! GATACTTACATTTATTTTGT+TGG - chr3_4:70221091-70221110 Msa0518380:intron 20.0%
!! TTTAATCATAGTATATGGAA+AGG - chr3_4:70221666-70221685 Msa0518380:CDS 20.0%
!! AACCTTTAGATTAAAATAGA+TGG - chr3_4:70221758-70221777 Msa0518380:intron 20.0%
!! TAACAATGAAAATAAAGATC+TGG + chr3_4:70221910-70221929 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG - chr3_4:70221987-70222006 Msa0518380:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG - chr3_4:70222102-70222121 Msa0518380:CDS 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG + chr3_4:70222132-70222151 None:intergenic 20.0%
!! AAACATTGAATTCAATTGTT+TGG - chr3_4:70222529-70222548 Msa0518380:intron 20.0%
!! GAGGTTATAAATTCAAAATT+AGG - chr3_4:70222597-70222616 Msa0518380:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG - chr3_4:70222829-70222848 Msa0518380:intron 20.0%
! CAAAAGATGAGAATTGAAAT+TGG + chr3_4:70219757-70219776 None:intergenic 25.0%
! AATTTACAAATCGAAATCGA+TGG - chr3_4:70219796-70219815 Msa0518380:three_prime_UTR 25.0%
! ATTTACAAATCGAAATCGAT+GGG - chr3_4:70219797-70219816 Msa0518380:three_prime_UTR 25.0%
! GAATAACAGATATGAAATTG+AGG + chr3_4:70219937-70219956 None:intergenic 25.0%
! TGAACAATTGAACTAAAGTT+TGG - chr3_4:70220014-70220033 Msa0518380:CDS 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG - chr3_4:70220497-70220516 Msa0518380:intron 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG - chr3_4:70220827-70220846 Msa0518380:intron 25.0%
! AATGTTTATCTCACTTTGTA+TGG + chr3_4:70221198-70221217 None:intergenic 25.0%
!! ATTGAGATTTTTGTTCTGTT+GGG - chr3_4:70221399-70221418 Msa0518380:intron 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG - chr3_4:70221484-70221503 Msa0518380:intron 25.0%
! AAGGAAATTAATGCAATACT+TGG - chr3_4:70221503-70221522 Msa0518380:intron 25.0%
! AGGAAATTAATGCAATACTT+GGG - chr3_4:70221504-70221523 Msa0518380:intron 25.0%
!! AATATGAATGGATTTAAGTC+AGG + chr3_4:70221625-70221644 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG + chr3_4:70221763-70221782 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAT+AGG + chr3_4:70221819-70221838 None:intergenic 25.0%
! GTAACATTAAAACAAGATGA+AGG - chr3_4:70221986-70222005 Msa0518380:intron 25.0%
! AACATTAAAACAAGATGAAG+GGG - chr3_4:70221988-70222007 Msa0518380:intron 25.0%
! ATTGTAAAAATAGTGCAACT+AGG - chr3_4:70222025-70222044 Msa0518380:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG - chr3_4:70222145-70222164 Msa0518380:CDS 25.0%
!! TTATGTTTGAGATGTGAATT+GGG + chr3_4:70222211-70222230 None:intergenic 25.0%
!! TTTATGTTTGAGATGTGAAT+TGG + chr3_4:70222212-70222231 None:intergenic 25.0%
! AACATAAAAAGACGTTGTTT+AGG - chr3_4:70222224-70222243 Msa0518380:intron 25.0%
! ACCATCAGATCAAAAATAAA+CGG + chr3_4:70222401-70222420 None:intergenic 25.0%
! ATTGAATTCAATGTTTCGAT+TGG + chr3_4:70222525-70222544 None:intergenic 25.0%
! CTTTCCATTTCTATTTGATA+AGG - chr3_4:70223153-70223172 Msa0518380:five_prime_UTR 25.0%
! GAAACCTTATCAAATAGAAA+TGG + chr3_4:70223160-70223179 None:intergenic 25.0%
! AAAAAACAATAGATGACCAA+AGG - chr3_4:70223193-70223212 Msa0518380:five_prime_UTR 25.0%
!! CAATTTTACTGAACTGTTTT+TGG - chr3_4:70223223-70223242 Msa0518380:five_prime_UTR 25.0%
! AATGTATAATGACTTGAGAA+TGG - chr3_4:70223265-70223284 Msa0518380:five_prime_UTR 25.0%
AATATGTGAGGGACAAATAA+GGG + chr3_4:70219649-70219668 None:intergenic 30.0%
AAATATGTGAGGGACAAATA+AGG + chr3_4:70219650-70219669 None:intergenic 30.0%
AGAAAGAGAGAAATATGTGA+GGG + chr3_4:70219660-70219679 None:intergenic 30.0%
AAGAAAGAGAGAAATATGTG+AGG + chr3_4:70219661-70219680 None:intergenic 30.0%
!!! AGTTTTTTCTGTTGAGGTTT+TGG + chr3_4:70219727-70219746 None:intergenic 30.0%
! TTCGATTTGTAAATTCGATG+AGG + chr3_4:70219791-70219810 None:intergenic 30.0%
TTTACAAATCGAAATCGATG+GGG - chr3_4:70219798-70219817 Msa0518380:three_prime_UTR 30.0%
TATATTCGTGAAGAAACCTA+AGG - chr3_4:70219823-70219842 Msa0518380:three_prime_UTR 30.0%
!! GAAATTGAGGGTATTGAAAA+AGG + chr3_4:70219924-70219943 None:intergenic 30.0%
! CACTACTTCTCATTTTCATA+TGG - chr3_4:70220097-70220116 Msa0518380:CDS 30.0%
AACAACAGTAATCAATACAG+TGG + chr3_4:70220143-70220162 None:intergenic 30.0%
CTAAATTTCCTCTATGCTAT+AGG + chr3_4:70220262-70220281 None:intergenic 30.0%
TGTATGGAAAATGAATTAGC+TGG - chr3_4:70220458-70220477 Msa0518380:intron 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG - chr3_4:70220496-70220515 Msa0518380:intron 30.0%
GAAAGGAAAAAACTCAAGTA+AGG + chr3_4:70220586-70220605 None:intergenic 30.0%
GGAAAATAAAGAACACAGAA+AGG + chr3_4:70220603-70220622 None:intergenic 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG - chr3_4:70220671-70220690 Msa0518380:intron 30.0%
TCGTGAAAAGAAGAAAGATA+GGG - chr3_4:70220672-70220691 Msa0518380:intron 30.0%
AGAGAGTGAGTCATTATTAT+TGG + chr3_4:70220854-70220873 None:intergenic 30.0%
TACCTGTTAGTATCTTTCTA+TGG - chr3_4:70220873-70220892 Msa0518380:intron 30.0%
TGCTAACAAGTAGAGATTAT+CGG + chr3_4:70220933-70220952 None:intergenic 30.0%
! TACTTGTTAGCATCTTTCTA+TGG - chr3_4:70220941-70220960 Msa0518380:intron 30.0%
TGAAGATGTTCAGAAACTTA+TGG - chr3_4:70221217-70221236 Msa0518380:intron 30.0%
AAGTTCAATGAATCTAGATG+TGG + chr3_4:70221328-70221347 None:intergenic 30.0%
! GATTGAGATTTTTGTTCTGT+TGG - chr3_4:70221398-70221417 Msa0518380:intron 30.0%
TGTTGGGCTGTTAATATATT+TGG - chr3_4:70221415-70221434 Msa0518380:intron 30.0%
GGAAATTAATGCAATACTTG+GGG - chr3_4:70221505-70221524 Msa0518380:intron 30.0%
!! CTGGCTTTAATCATAGTATA+TGG - chr3_4:70221661-70221680 Msa0518380:CDS 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG + chr3_4:70221830-70221849 None:intergenic 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG + chr3_4:70221831-70221850 None:intergenic 30.0%
AAAGATCTGGTCATTAACAT+TGG + chr3_4:70221897-70221916 None:intergenic 30.0%
! TATGTTTGAGATGTGAATTG+GGG + chr3_4:70222210-70222229 None:intergenic 30.0%
AAGGATGTATTGCATATACA+TGG + chr3_4:70222640-70222659 None:intergenic 30.0%
CATGCAATAAGAATTTATGG+GGG + chr3_4:70222663-70222682 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG + chr3_4:70222664-70222683 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG + chr3_4:70222665-70222684 None:intergenic 30.0%
TGCCATGCAATAAGAATTTA+TGG + chr3_4:70222666-70222685 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG + chr3_4:70222886-70222905 None:intergenic 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG + chr3_4:70222887-70222906 None:intergenic 30.0%
TATAGAAGTTGACTAACTGA+TGG - chr3_4:70222915-70222934 Msa0518380:intron 30.0%
GTAAAATTGTTTCACTCCTT+TGG + chr3_4:70223212-70223231 None:intergenic 30.0%
ATGCACACACTATTTATTTG+AGG - chr3_4:70223293-70223312 Msa0518380:five_prime_UTR 30.0%
ACTTGCTCAGTATCAACAAA+AGG - chr3_4:70219895-70219914 Msa0518380:intron 35.0%
! TAGCTCAGTGTTGTTAATCT+CGG + chr3_4:70220410-70220429 None:intergenic 35.0%
ACACCAGATACAATCAAAGA+CGG + chr3_4:70220441-70220460 None:intergenic 35.0%
CTTTGATTGTATCTGGTGTA+TGG - chr3_4:70220442-70220461 Msa0518380:intron 35.0%
AAAATGAATTAGCTGGACGT+TGG - chr3_4:70220465-70220484 Msa0518380:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG - chr3_4:70220485-70220504 Msa0518380:intron 35.0%
TTTCTTCTTTAACGCCAACA+AGG + chr3_4:70220698-70220717 None:intergenic 35.0%
TTGCTCAACATTTATAAGCC+AGG + chr3_4:70220755-70220774 None:intergenic 35.0%
AGCCATAGAAAGATACTAAC+AGG + chr3_4:70220878-70220897 None:intergenic 35.0%
CAAGTAGAGATTATCGGAAA+GGG + chr3_4:70220927-70220946 None:intergenic 35.0%
ACAAGTAGAGATTATCGGAA+AGG + chr3_4:70220928-70220947 None:intergenic 35.0%
ATCTCTTCTGAACAGGATAT+CGG + chr3_4:70221013-70221032 None:intergenic 35.0%
CTCAATTATCTCTTCTGAAC+AGG + chr3_4:70221020-70221039 None:intergenic 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG - chr3_4:70221151-70221170 Msa0518380:intron 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG - chr3_4:70221155-70221174 Msa0518380:intron 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG + chr3_4:70221249-70221268 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG - chr3_4:70221341-70221360 Msa0518380:intron 35.0%
! GAACTTGAGTGTACCTTTTT+GGG - chr3_4:70221342-70221361 Msa0518380:intron 35.0%
! AACTTGAGTGTACCTTTTTG+GGG - chr3_4:70221343-70221362 Msa0518380:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG - chr3_4:70221457-70221476 Msa0518380:intron 35.0%
ATTATCAGCAGAAGATGAAG+AGG - chr3_4:70221532-70221551 Msa0518380:intron 35.0%
! AGAAGATGAAGAGGAGATTT+TGG - chr3_4:70221541-70221560 Msa0518380:intron 35.0%
ACTGAAAAATCCATGTACCT+GGG + chr3_4:70221588-70221607 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG + chr3_4:70221589-70221608 None:intergenic 35.0%
ACAGCTGGAACAAATATGAA+TGG + chr3_4:70221637-70221656 None:intergenic 35.0%
AAAGCTGCAGAAAATCTGAA+TGG - chr3_4:70222315-70222334 Msa0518380:intron 35.0%
AAGCTGCAGAAAATCTGAAT+GGG - chr3_4:70222316-70222335 Msa0518380:intron 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG - chr3_4:70222397-70222416 Msa0518380:intron 35.0%
ACATTGCTTAGAGAAGAGAT+GGG + chr3_4:70222555-70222574 None:intergenic 35.0%
AACATTGCTTAGAGAAGAGA+TGG + chr3_4:70222556-70222575 None:intergenic 35.0%
CAATAAGAATTTATGGGGGA+AGG + chr3_4:70222659-70222678 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG - chr3_4:70222661-70222680 Msa0518380:intron 35.0%
CGAAGAAACCAAAAAGCAGT+GGG - chr3_4:70219566-70219585 Msa0518380:three_prime_UTR 40.0%
GAAGAAACCAAAAAGCAGTG+GGG - chr3_4:70219567-70219586 Msa0518380:three_prime_UTR 40.0%
CGTGAAGAAACCTAAGGTAA+CGG - chr3_4:70219829-70219848 Msa0518380:three_prime_UTR 40.0%
TTTGACGTGCACAATGAGAA+TGG + chr3_4:70219959-70219978 None:intergenic 40.0%
GGCATATCGTAGAACAATAG+AGG + chr3_4:70220289-70220308 None:intergenic 40.0%
TCTATGCTACAGTGCTATAG+CGG + chr3_4:70220355-70220374 None:intergenic 40.0%
AGACCGTCTTTGATTGTATC+TGG - chr3_4:70220435-70220454 Msa0518380:intron 40.0%
CTTCAATAACAGCATCAAGC+TGG + chr3_4:70220624-70220643 None:intergenic 40.0%
! TATTGAAGCAAGTTGACACC+TGG - chr3_4:70220734-70220753 Msa0518380:intron 40.0%
ACTCAATGGCTCAATAGACA+AGG + chr3_4:70220979-70220998 None:intergenic 40.0%
CGGAAAGGGAAAATACTCAA+TGG + chr3_4:70220993-70221012 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG + chr3_4:70221007-70221026 None:intergenic 40.0%
TTCTGAACAGGATATCGGAA+AGG + chr3_4:70221008-70221027 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG + chr3_4:70221297-70221316 None:intergenic 40.0%
! ACTTGAGTGTACCTTTTTGG+GGG - chr3_4:70221344-70221363 Msa0518380:intron 40.0%
!! GTTAGGCATTGAAGTTGTAC+TGG - chr3_4:70221372-70221391 Msa0518380:intron 40.0%
TTTGGCAGAGTTTGAGAACT+TGG - chr3_4:70221559-70221578 Msa0518380:intron 40.0%
ATTTGTTCCAGCTGTACTAC+TGG - chr3_4:70221642-70221661 Msa0518380:CDS 40.0%
ATTAAAGCCAGTAGTACAGC+TGG + chr3_4:70221652-70221671 None:intergenic 40.0%
GATCTGGTCATTAACATTGG+TGG + chr3_4:70221894-70221913 None:intergenic 40.0%
GCAGAAAATCTGAATGGGTA+TGG - chr3_4:70222321-70222340 Msa0518380:intron 40.0%
GAAAATCTGAATGGGTATGG+TGG - chr3_4:70222324-70222343 Msa0518380:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG - chr3_4:70222339-70222358 Msa0518380:intron 40.0%
ATAGACTAAGTGAGGCACAT+GGG - chr3_4:70222347-70222366 Msa0518380:intron 40.0%
GAGCTAGTGATTGACTATAG+AGG - chr3_4:70222578-70222597 Msa0518380:intron 40.0%
! AACTTTTCGTCAACCTTGTC+AGG + chr3_4:70222757-70222776 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG - chr3_4:70222756-70222775 Msa0518380:intron 40.0%
TGATGTTGCAACAGTTATGG+AGG - chr3_4:70222939-70222958 Msa0518380:CDS 40.0%
AACAGTTATGGAGGAACCAT+TGG - chr3_4:70222948-70222967 Msa0518380:CDS 40.0%
AATGTTCTTCAAGCTGCCAA+TGG + chr3_4:70222967-70222986 None:intergenic 40.0%
TGAGGCAACAGAATTGATAG+TGG + chr3_4:70223057-70223076 None:intergenic 40.0%
AAAACTCCAGTAACTGCATG+AGG + chr3_4:70223075-70223094 None:intergenic 40.0%
!!! GCAGTTACTGGAGTTTTGAA+TGG - chr3_4:70223078-70223097 Msa0518380:five_prime_UTR 40.0%
AGTGACAGGAAACAACTCTC+TGG - chr3_4:70219534-70219553 Msa0518380:three_prime_UTR 45.0%
!!! CTGCTTTTTGGTTTCTTCGC+TGG + chr3_4:70219565-70219584 None:intergenic 45.0%
GCGAAGAAACCAAAAAGCAG+TGG - chr3_4:70219565-70219584 Msa0518380:three_prime_UTR 45.0%
!! CTATGAACCCCACTGCTTTT+TGG + chr3_4:70219577-70219596 None:intergenic 45.0%
CAAAAAGCAGTGGGGTTCAT+AGG - chr3_4:70219575-70219594 Msa0518380:three_prime_UTR 45.0%
AAACAGACCGAAACTGCTGT+TGG - chr3_4:70219695-70219714 Msa0518380:three_prime_UTR 45.0%
GTCGTTTCCAACAGCAGTTT+CGG + chr3_4:70219705-70219724 None:intergenic 45.0%
GGCTATAGCCTATAGCATAG+AGG - chr3_4:70220251-70220270 Msa0518380:intron 45.0%
GCTATAGCACTGTAGCATAG+AGG - chr3_4:70220354-70220373 Msa0518380:intron 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG - chr3_4:70220681-70220700 Msa0518380:intron 45.0%
TGAACTGACAAGCAAGCAGA+AGG - chr3_4:70221130-70221149 Msa0518380:intron 45.0%
GTTTGAGAACTTGGAAACCC+AGG - chr3_4:70221568-70221587 Msa0518380:intron 45.0%
AACTTGGAAACCCAGGTACA+TGG - chr3_4:70221575-70221594 Msa0518380:CDS 45.0%
TGAAAATGGGGGAGTGGAAT+TGG + chr3_4:70221864-70221883 None:intergenic 45.0%
!! TGGTGGTGGTGGTTGAAAAT+GGG + chr3_4:70221877-70221896 None:intergenic 45.0%
!! TTGGTGGTGGTGGTTGAAAA+TGG + chr3_4:70221878-70221897 None:intergenic 45.0%
!! GTCATTAACATTGGTGGTGG+TGG + chr3_4:70221888-70221907 None:intergenic 45.0%
CTGGTCATTAACATTGGTGG+TGG + chr3_4:70221891-70221910 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG - chr3_4:70222346-70222365 Msa0518380:intron 45.0%
TATGCAGCTAACTGAGAGAG+AGG + chr3_4:70222477-70222496 None:intergenic 45.0%
GATCTTCGACTGCAAACTGT+TGG + chr3_4:70222711-70222730 None:intergenic 45.0%
TACTTCAGCATCACTCGTAG+TGG + chr3_4:70222815-70222834 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG + chr3_4:70222882-70222901 None:intergenic 45.0%
GGCTGATGTTGCAACAGTTA+TGG - chr3_4:70222936-70222955 Msa0518380:CDS 45.0%
GCAAACCAAAGTGTAGCATC+TGG - chr3_4:70223013-70223032 Msa0518380:exon 45.0%
GAAGACCAGATGCTACACTT+TGG + chr3_4:70223021-70223040 None:intergenic 45.0%
!!! TTTTTTATTTTATTTTCTTT+GGG + chr3_4:70222894-70222913 None:intergenic 5.0%
CGATCTACGTCCGTTACCTT+AGG + chr3_4:70219842-70219861 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG + chr3_4:70219885-70219904 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG + chr3_4:70219886-70219905 None:intergenic 50.0%
!! GAGTGTACCTTTTTGGGGGA+CGG - chr3_4:70221348-70221367 Msa0518380:intron 50.0%
!! AGTGTACCTTTTTGGGGGAC+GGG - chr3_4:70221349-70221368 Msa0518380:intron 50.0%
GAATTGGAGGCTGGAGAAGA+AGG + chr3_4:70221848-70221867 None:intergenic 50.0%
AAATGGGGGAGTGGAATTGG+AGG + chr3_4:70221861-70221880 None:intergenic 50.0%
!! GTGGTGGTGGTTGAAAATGG+GGG + chr3_4:70221875-70221894 None:intergenic 50.0%
!! GGTGGTGGTGGTTGAAAATG+GGG + chr3_4:70221876-70221895 None:intergenic 50.0%
AGCTGCATAATGTGACTGCC+TGG - chr3_4:70222488-70222507 Msa0518380:intron 50.0%
CGATTGGCAGCATAACTACC+AGG + chr3_4:70222509-70222528 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG - chr3_4:70222741-70222760 Msa0518380:intron 50.0%
ACCTTGTCAGGAACTGTGCT+AGG + chr3_4:70222745-70222764 None:intergenic 50.0%
CCTTGGTTGGAACATCAGGA+AGG + chr3_4:70222783-70222802 None:intergenic 50.0%
CCTTCCTGATGTTCCAACCA+AGG - chr3_4:70222780-70222799 Msa0518380:intron 50.0%
GCATCACTCGTAGTGGTAAC+TGG + chr3_4:70222808-70222827 None:intergenic 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG + chr3_4:70222881-70222900 None:intergenic 50.0%
CTGTTGCCTCATGCAGTTAC+TGG - chr3_4:70223066-70223085 Msa0518380:five_prime_UTR 50.0%
!! GTGTACCTTTTTGGGGGACG+GGG - chr3_4:70221350-70221369 Msa0518380:intron 55.0%
GGTGGTTGAAAATGGGGGAG+TGG + chr3_4:70221870-70221889 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG + chr3_4:70222736-70222755 None:intergenic 55.0%
GGTGCCTTGGTTGGAACATC+AGG + chr3_4:70222787-70222806 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG + chr3_4:70222796-70222815 None:intergenic 55.0%
CGTAGTGGTAACTGGTGCCT+TGG + chr3_4:70222800-70222819 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG + chr3_4:70222880-70222899 None:intergenic 55.0%
GTGCTATAGCGGTGCAGCAG+CGG + chr3_4:70220344-70220363 None:intergenic 60.0%
CCTAACCCCGTCCCCCAAAA+AGG + chr3_4:70221358-70221377 None:intergenic 60.0%
!! CCTTTTTGGGGGACGGGGTT+AGG - chr3_4:70221355-70221374 Msa0518380:intron 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG + chr3_4:70222879-70222898 None:intergenic 60.0%
TATAGCGGTGCAGCAGCGGC+TGG + chr3_4:70220340-70220359 None:intergenic 65.0%
GGGGGAGTGGAATTGGAGGC+TGG + chr3_4:70221857-70221876 None:intergenic 65.0%
! GGGGTGGGTTCAGAGGGATG+AGG + chr3_4:70222860-70222879 None:intergenic 65.0%
! GGGACGGGGGTGGGTTCAGA+GGG + chr3_4:70222866-70222885 None:intergenic 70.0%
! AGGGACGGGGGTGGGTTCAG+AGG + chr3_4:70222867-70222886 None:intergenic 70.0%
TGGGAGAGAGGGACGGGGGT+GGG + chr3_4:70222875-70222894 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG + chr3_4:70222876-70222895 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70219526 70223317 70219526 ID=Msa0518380;Name=Msa0518380
chr3_4 mRNA 70219526 70223317 70219526 ID=Msa0518380-mRNA-1;Parent=Msa0518380;Name=Msa0518380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=289|1|1|1|1|1|6|339|217
chr3_4 exon 70219526 70219890 70219526 ID=Msa0518380-mRNA-1:exon:18939;Parent=Msa0518380-mRNA-1
chr3_4 exon 70219993 70220128 70219993 ID=Msa0518380-mRNA-1:exon:18938;Parent=Msa0518380-mRNA-1
chr3_4 exon 70221254 70221337 70221254 ID=Msa0518380-mRNA-1:exon:18937;Parent=Msa0518380-mRNA-1
chr3_4 exon 70221572 70221724 70221572 ID=Msa0518380-mRNA-1:exon:18936;Parent=Msa0518380-mRNA-1
chr3_4 exon 70222066 70222218 70222066 ID=Msa0518380-mRNA-1:exon:18935;Parent=Msa0518380-mRNA-1
chr3_4 exon 70222927 70223317 70222927 ID=Msa0518380-mRNA-1:exon:18934;Parent=Msa0518380-mRNA-1
chr3_4 five_prime_UTR 70223029 70223317 70223029 ID=Msa0518380-mRNA-1:five_prime_utr;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70222927 70223028 70222927 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70222066 70222218 70222066 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70221572 70221724 70221572 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70221254 70221337 70221254 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70219993 70220128 70219993 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 CDS 70219865 70219890 70219865 ID=Msa0518380-mRNA-1:cds;Parent=Msa0518380-mRNA-1
chr3_4 three_prime_UTR 70219526 70219864 70219526 ID=Msa0518380-mRNA-1:three_prime_utr;Parent=Msa0518380-mRNA-1
Gene Sequence

>Msa0518380

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCCTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>Msa0518380

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA*