AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605510 MtrunA17_Chr4g0034871 95.631 206 0 1 1 197 1 206 6.87e-145 401
Msa0605510 MtrunA17_Chr4g0004661 84.058 207 23 2 1 197 57 263 3.83e-127 358
Msa0605510 MtrunA17_Chr2g0331691 81.463 205 28 2 3 197 5 209 2.44e-122 344
Msa0605510 MtrunA17_Chr6g0466301 69.082 207 53 3 1 197 1 206 1.04e-100 289
Msa0605510 MtrunA17_Chr6g0465491 69.082 207 53 3 1 197 1 206 1.04e-100 289
Msa0605510 MtrunA17_Chr1g0201121 67.464 209 54 3 1 197 1 207 2.00e-97 281
Msa0605510 MtrunA17_Chr8g0383261 61.576 203 68 2 4 197 8 209 1.64e-89 261
Msa0605510 MtrunA17_Chr6g0466161 55.307 179 79 1 19 197 10 187 1.12e-66 203
Msa0605510 MtrunA17_Chr6g0465471 55.307 179 79 1 19 197 10 187 2.39e-66 202
Msa0605510 MtrunA17_Chr6g0466431 67.327 101 33 0 1 101 1 101 7.82e-48 152
Msa0605510 MtrunA17_Chr6g0465611 67.327 101 33 0 1 101 1 101 7.82e-48 152
Msa0605510 MtrunA17_Chr4g0032201 37.019 208 104 6 8 195 12 212 4.78e-37 128
Msa0605510 MtrunA17_Chr1g0182321 37.931 203 103 8 2 190 5 198 1.30e-35 124
Msa0605510 MtrunA17_Chr2g0276941 36.323 223 102 8 1 190 1 216 1.54e-35 124
Msa0605510 MtrunA17_Chr1g0182301 37.438 203 104 8 2 190 5 198 4.57e-35 123
Msa0605510 MtrunA17_Chr2g0276931 38.690 168 87 4 8 166 9 169 1.94e-34 120
Msa0605510 MtrunA17_Chr7g0263071 38.342 193 100 7 8 190 15 198 2.72e-34 120
Msa0605510 MtrunA17_Chr1g0212521 38.144 194 95 7 8 192 15 192 4.49e-34 120
Msa0605510 MtrunA17_Chr4g0030911 37.563 197 104 7 8 194 15 202 5.66e-34 120
Msa0605510 MtrunA17_Chr5g0400131 36.364 209 100 7 10 197 11 207 6.31e-34 119
Msa0605510 MtrunA17_Chr2g0283131 35.714 210 105 8 8 195 13 214 1.46e-33 119
Msa0605510 MtrunA17_Chr2g0327911 39.286 168 88 5 8 166 15 177 2.48e-33 118
Msa0605510 MtrunA17_Chr4g0055081 35.577 208 102 7 10 197 11 206 1.26e-32 116
Msa0605510 MtrunA17_Chr7g0250531 35.500 200 109 6 8 195 8 199 2.21e-32 115
Msa0605510 MtrunA17_Chr3g0112681 38.095 168 88 4 8 166 12 172 2.30e-32 116
Msa0605510 MtrunA17_Chr4g0055651 38.095 168 88 4 8 166 8 168 2.57e-32 115
Msa0605510 MtrunA17_Chr8g0335471 35.000 200 111 5 8 195 8 200 3.35e-32 115
Msa0605510 MtrunA17_Chr4g0046261 34.286 210 108 8 8 195 13 214 3.61e-32 115
Msa0605510 MtrunA17_Chr8g0382221 36.585 205 105 7 10 197 11 207 2.07e-31 113
Msa0605510 MtrunA17_Chr3g0123971 35.784 204 107 5 10 197 11 206 5.52e-31 112
Msa0605510 MtrunA17_Chr4g0040781 33.333 210 110 8 8 195 13 214 8.08e-31 112
Msa0605510 MtrunA17_Chr1g0174281 35.829 187 104 4 8 185 15 194 9.72e-30 109
Msa0605510 MtrunA17_Chr6g0458081 36.628 172 93 4 8 170 6 170 1.43e-29 108
Msa0605510 MtrunA17_Chr8g0390561 36.471 170 92 4 10 170 11 173 3.21e-29 107
Msa0605510 MtrunA17_Chr3g0123821 34.184 196 111 5 8 194 16 202 3.97e-29 107
Msa0605510 MtrunA17_Chr8g0351861 38.272 162 84 5 8 160 16 170 1.02e-28 107
Msa0605510 MtrunA17_Chr2g0315551 32.536 209 113 8 8 195 13 214 1.15e-28 106
Msa0605510 MtrunA17_Chr3g0109721 36.364 165 89 4 10 165 12 169 1.98e-28 105
Msa0605510 MtrunA17_Chr7g0214241 33.929 168 95 4 8 166 15 175 3.48e-28 105
Msa0605510 MtrunA17_Chr2g0325091 33.014 209 111 8 8 195 11 211 4.54e-28 105
Msa0605510 MtrunA17_Chr2g0290891 34.171 199 112 5 8 194 6 197 6.40e-28 104
Msa0605510 MtrunA17_Chr5g0433561 35.758 165 90 4 10 165 12 169 8.11e-28 103
Msa0605510 MtrunA17_Chr8g0381841 34.545 165 92 4 8 163 17 174 1.25e-27 103
Msa0605510 MtrunA17_Chr7g0231131 37.576 165 87 4 8 163 15 172 1.38e-27 103
Msa0605510 MtrunA17_Chr1g0189361 33.929 168 95 4 8 166 14 174 4.97e-27 102
Msa0605510 MtrunA17_Chr2g0319951 34.545 165 92 3 8 163 13 170 2.16e-26 100
Msa0605510 MtrunA17_Chr7g0234201 32.738 168 97 4 8 166 13 173 3.36e-26 100
Msa0605510 MtrunA17_Chr8g0346421 33.032 221 117 9 1 197 19 232 3.76e-26 100
Msa0605510 MtrunA17_Chr6g0482721 35.185 162 89 4 8 160 12 166 4.48e-26 99.8
Msa0605510 MtrunA17_Chr8g0349711 32.571 175 102 4 5 170 3 170 1.85e-25 98.2
Msa0605510 MtrunA17_Chr8g0349681 35.673 171 94 4 9 170 176 339 2.06e-25 102
Msa0605510 MtrunA17_Chr8g0349681 33.981 206 113 7 8 197 384 582 8.04e-24 98.2
Msa0605510 MtrunA17_Chr8g0349681 33.136 169 97 4 5 164 10 171 5.51e-22 92.8
Msa0605510 MtrunA17_Chr7g0275991 36.420 162 87 4 8 160 20 174 4.20e-25 97.4
Msa0605510 MtrunA17_Chr6g0465601 57.143 70 30 0 99 168 3 72 4.52e-25 93.2
Msa0605510 MtrunA17_Chr1g0199331 34.132 167 93 5 9 165 32 191 8.74e-25 95.9
Msa0605510 MtrunA17_Chr8g0392931 35.185 162 89 4 8 160 14 168 9.76e-25 96.3
Msa0605510 MtrunA17_Chr6g0466421 59.091 66 27 0 103 168 17 82 4.38e-24 90.9
Msa0605510 MtrunA17_Chr8g0384311 33.140 172 100 5 8 170 13 178 6.06e-24 94.0
Msa0605510 MtrunA17_Chr1g0159481 33.721 172 99 5 8 170 17 182 5.98e-23 91.7
Msa0605510 MtrunA17_Chr7g0265001 34.545 165 92 6 10 164 18 176 1.05e-21 88.2
Msa0605510 MtrunA17_Chr1g0197331 32.990 194 110 6 9 191 16 200 2.07e-21 87.4
Msa0605510 MtrunA17_Chr1g0180291 30.208 192 111 6 9 191 15 192 1.20e-20 85.5
Msa0605510 MtrunA17_Chr3g0130271 31.285 179 107 6 2 170 6 178 1.36e-20 85.1
Msa0605510 MtrunA17_Chr2g0326141 64.912 57 20 0 120 176 299 355 1.28e-17 79.3
Msa0605510 MtrunA17_Chr3g0138121 28.313 166 100 4 9 165 14 169 5.85e-17 75.9
Msa0605510 MtrunA17_Chr3g0138101 29.480 173 89 7 9 165 14 169 5.85e-17 75.9
Msa0605510 MtrunA17_Chr3g0138111 29.480 173 89 7 9 165 14 169 6.49e-17 75.9
Msa0605510 MtrunA17_Chr6g0486041 27.670 206 117 6 8 195 6 197 7.85e-15 70.1
Msa0605510 MtrunA17_Chr2g0325101 26.816 179 107 5 8 168 6 178 2.62e-11 60.1
Msa0605510 MtrunA17_Chr3g0117931 26.425 193 118 5 1 175 1 187 6.28e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605510 AT3G18820.1 88.835 206 14 1 1 197 1 206 1.41e-135 378
Msa0605510 AT1G49300.2 84.951 206 22 1 1 197 1 206 1.99e-129 362
Msa0605510 AT1G49300.1 84.951 206 22 1 1 197 1 206 1.99e-129 362
Msa0605510 AT1G52280.1 79.612 206 33 1 1 197 1 206 1.54e-120 340
Msa0605510 AT3G16100.1 78.155 206 36 1 1 197 1 206 3.82e-120 339
Msa0605510 AT4G09720.1 66.505 206 60 1 1 197 1 206 3.78e-101 291
Msa0605510 AT4G09720.4 64.929 211 60 2 1 197 1 211 8.50e-98 282
Msa0605510 AT4G09720.3 63.134 217 60 2 1 197 1 217 1.63e-97 282
Msa0605510 AT1G22740.1 66.667 207 55 3 1 197 1 203 4.02e-96 278
Msa0605510 AT2G21880.1 60.476 210 65 3 4 197 5 212 1.10e-87 257
Msa0605510 AT4G09720.6 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0605510 AT4G09720.5 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0605510 AT4G09720.2 67.836 171 55 0 27 197 2 172 7.81e-87 253
Msa0605510 AT2G21880.4 61.828 186 62 2 19 197 4 187 6.77e-81 239
Msa0605510 AT2G21880.3 61.828 186 62 2 19 197 4 187 6.77e-81 239
Msa0605510 AT2G21880.2 56.667 210 65 4 4 197 5 204 4.93e-78 232
Msa0605510 AT5G39620.1 55.233 172 68 1 6 168 3 174 1.01e-64 198
Msa0605510 AT5G59840.1 37.563 197 107 6 8 194 15 205 7.17e-36 125
Msa0605510 AT3G53610.2 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0605510 AT3G53610.3 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0605510 AT3G53610.1 38.021 192 103 6 8 189 15 200 4.97e-35 123
Msa0605510 AT3G46060.2 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0605510 AT3G46060.3 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0605510 AT3G46060.1 36.548 197 109 6 8 194 15 205 1.64e-34 122
Msa0605510 AT1G09630.1 38.596 171 89 4 8 169 12 175 3.81e-34 120
Msa0605510 AT1G28550.1 35.533 197 101 6 8 185 13 202 7.07e-34 120
Msa0605510 AT2G33870.1 34.286 210 109 7 8 195 13 215 7.70e-34 120
Msa0605510 AT3G11730.1 38.764 178 93 4 1 169 1 171 4.33e-33 117
Msa0605510 AT2G44610.1 36.190 210 100 7 10 197 11 208 7.28e-33 117
Msa0605510 AT4G18430.1 33.333 210 110 8 8 195 13 214 1.26e-32 117
Msa0605510 AT4G17530.1 35.176 199 111 5 8 195 8 199 1.73e-32 116
Msa0605510 AT5G47200.1 35.176 199 111 5 8 195 8 199 3.40e-32 115
Msa0605510 AT5G60860.1 34.762 210 107 8 8 195 13 214 5.10e-32 115
Msa0605510 AT1G07410.1 34.135 208 109 7 8 195 12 211 5.38e-32 115
Msa0605510 AT5G03520.1 41.341 179 84 8 2 166 5 176 7.63e-32 115
Msa0605510 AT3G15060.1 34.286 210 108 8 8 195 13 214 7.66e-32 115
Msa0605510 AT3G46830.1 38.182 165 86 4 8 163 12 169 9.29e-32 114
Msa0605510 AT3G46830.2 38.182 165 86 4 8 163 12 169 9.29e-32 114
Msa0605510 AT5G45750.1 34.450 209 108 9 8 195 13 213 9.77e-32 114
Msa0605510 AT5G59150.1 36.970 165 88 4 8 163 12 169 1.23e-31 114
Msa0605510 AT3G12160.1 36.842 190 104 4 8 188 15 197 2.27e-31 114
Msa0605510 AT3G09900.1 41.341 179 84 8 2 166 5 176 3.92e-31 113
Msa0605510 AT5G64990.1 36.842 209 100 7 10 197 9 206 8.04e-31 112
Msa0605510 AT1G02130.1 34.000 200 113 6 8 195 8 200 1.96e-30 111
Msa0605510 AT4G35860.1 36.842 171 92 4 8 169 6 169 7.44e-30 109
Msa0605510 AT4G18800.1 34.783 184 94 5 8 173 13 188 1.90e-29 108
Msa0605510 AT1G05810.1 31.776 214 119 6 4 197 8 214 4.34e-29 108
Msa0605510 AT5G47960.1 33.019 212 111 6 8 195 15 219 5.55e-29 107
Msa0605510 AT5G10260.1 34.615 208 105 7 10 197 11 207 1.20e-28 106
Msa0605510 AT1G05810.2 31.776 214 119 6 4 197 54 260 1.31e-28 107
Msa0605510 AT1G16920.1 32.212 208 114 8 8 195 13 213 2.03e-28 106
Msa0605510 AT4G39990.1 32.990 194 109 5 8 192 17 198 2.30e-28 106
Msa0605510 AT5G03520.2 44.697 132 67 4 35 166 41 166 2.84e-28 105
Msa0605510 AT5G65270.1 34.054 185 98 5 8 175 17 194 3.01e-28 105
Msa0605510 AT5G64990.2 35.648 216 100 8 10 197 9 213 4.16e-28 105
Msa0605510 AT2G31680.1 33.333 168 96 4 8 166 12 172 4.50e-28 105
Msa0605510 AT4G17170.1 34.171 199 112 5 8 194 6 197 5.24e-28 105
Msa0605510 AT4G17160.1 36.471 170 92 4 9 169 7 169 5.73e-28 104
Msa0605510 AT1G06400.1 35.152 165 91 4 8 163 13 170 7.07e-28 104
Msa0605510 AT1G73640.1 37.037 162 86 4 8 160 13 167 2.08e-27 103
Msa0605510 AT4G19640.1 33.880 183 102 5 10 180 12 187 4.74e-27 102
Msa0605510 AT5G45130.1 35.152 165 91 4 10 165 12 169 7.58e-27 101
Msa0605510 AT1G18200.1 36.970 165 88 5 8 163 13 170 8.53e-27 102
Msa0605510 AT2G43130.1 33.333 168 96 4 8 166 12 172 1.58e-26 101
Msa0605510 AT4G39890.1 35.152 165 92 3 9 164 10 168 2.11e-26 100
Msa0605510 AT1G01200.1 34.320 169 96 3 1 160 21 183 2.72e-26 101
Msa0605510 AT2G22290.1 32.843 204 112 5 10 197 11 205 6.85e-26 99.4
Msa0605510 AT5G47520.1 33.333 168 96 4 8 166 14 174 9.23e-26 99.4
Msa0605510 AT5G45130.2 34.969 163 90 4 12 165 22 177 1.18e-25 99.0
Msa0605510 AT3G07410.1 32.143 168 98 4 8 166 12 172 2.86e-25 98.2
Msa0605510 AT3G54840.1 32.955 176 100 6 1 165 25 193 3.29e-24 95.1
Msa0605510 AT5G59150.2 39.024 123 68 3 41 163 3 118 7.48e-24 93.2
Msa0605510 AT3G54840.3 33.333 165 93 5 11 165 2 159 1.42e-23 92.4
Msa0605510 AT3G54840.2 32.558 172 98 6 1 161 25 189 4.72e-23 91.7
Msa0605510 AT4G35860.2 40.476 126 67 4 41 165 2 120 5.04e-23 90.9
Msa0605510 AT1G43890.3 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0605510 AT1G43890.1 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0605510 AT1G43890.2 34.302 172 98 6 8 170 13 178 6.33e-23 91.7
Msa0605510 AT4G19640.2 34.307 137 76 3 10 137 12 143 1.59e-21 86.7
Msa0605510 AT5G03530.2 32.461 191 106 7 10 191 15 191 3.11e-21 87.4
Msa0605510 AT5G03530.1 32.461 191 106 7 10 191 15 191 3.11e-21 87.4
Msa0605510 AT4G19640.3 35.833 120 64 2 10 120 12 127 2.59e-20 84.3
Msa0605510 AT3G09910.3 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0605510 AT3G09910.1 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0605510 AT3G09910.2 30.052 193 110 7 9 191 14 191 1.53e-18 80.1
Msa0605510 AT3G09910.5 31.515 165 98 5 9 164 14 172 5.51e-18 78.6
Msa0605510 AT3G09910.4 31.515 165 98 5 9 164 14 172 5.51e-18 78.6
Msa0605510 AT5G55190.1 29.480 173 89 7 9 165 14 169 7.51e-17 75.9
Msa0605510 AT5G20010.1 29.480 173 89 7 9 165 14 169 9.14e-17 75.9
Msa0605510 AT5G20020.1 29.480 173 89 7 9 165 14 169 9.53e-17 75.9
Msa0605510 AT5G55080.1 26.455 189 116 4 9 184 14 192 1.24e-15 72.8
Msa0605510 AT4G28950.1 29.189 185 109 6 8 176 6 184 2.46e-15 71.6
Msa0605510 AT5G62880.1 27.807 187 111 5 1 169 1 181 5.89e-12 62.8
Msa0605510 AT5G45970.1 26.667 180 108 5 8 169 6 179 8.40e-12 62.0
Msa0605510 AT3G48040.1 27.807 187 111 5 1 169 1 181 5.70e-11 59.7

Find 67 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCAGATGTCTCAAAATA+TGG 0.180049 4_2:+51419701 None:intergenic
ATCTTCAAATTGCACTTCTT+TGG 0.266812 4_2:+51421281 None:intergenic
TTCGACATTAATACCTTCTT+TGG 0.296445 4_2:+51419682 None:intergenic
TCTCTCTATCGTAAATCTTA+AGG 0.319379 4_2:+51422549 None:intergenic
GGGCATCCTTTGCTATGGTT+TGG 0.331267 4_2:+51419651 None:intergenic
AAGAAGTGCAATTTGAAGAT+AGG 0.335741 4_2:-51421278 Msa0605510:CDS
CGATTTGTTGGGTGCTTGTT+TGG 0.339053 4_2:-51418931 Msa0605510:three_prime_UTR
ATTCCTCCCTCCAGTTGTTA+AGG 0.391109 4_2:+51420152 None:intergenic
CATTTGACAACCTTAACAAC+TGG 0.410397 4_2:-51420162 Msa0605510:CDS
AGAAAGCAACTCCTAGGCTT+TGG 0.417205 4_2:+51420236 None:intergenic
AGCAATCAGCCAAGGTCATC+AGG 0.423555 4_2:-51419098 Msa0605510:CDS
CTCTTGAAAGTCATCATTCT+CGG 0.427482 4_2:-51422377 Msa0605510:CDS
CTTTCAAGAGCGTTCTTCTA+CGG 0.436158 4_2:+51422390 None:intergenic
GCAAAGGATGCCCTGAAAAG+TGG 0.450910 4_2:-51419641 Msa0605510:CDS
TTGTTTCCTATAACAACAAA+AGG 0.451159 4_2:+51419939 None:intergenic
ACAACAAAAGGAAAATTCTC+TGG 0.451708 4_2:+51419951 None:intergenic
GGATCAAGAGTTAACCGCTT+TGG 0.456479 4_2:+51422431 None:intergenic
TTTCCAACATCAATTGTGTC+TGG 0.462911 4_2:+51419122 None:intergenic
TGCACAGGTTTCAGAAAAGA+AGG 0.467310 4_2:-51419756 Msa0605510:intron
TTTCAGGGCATCCTTTGCTA+TGG 0.470505 4_2:+51419646 None:intergenic
CTAGGCTTTGGAATCTCTCC+TGG 0.472910 4_2:+51420248 None:intergenic
TAGGAGTTGCTTTCTATCGT+GGG 0.475937 4_2:-51420228 Msa0605510:CDS
TGGCAGATGTCTCAAAATAT+GGG 0.483704 4_2:+51419702 None:intergenic
TTTGAGACATCTGCCAAAGA+AGG 0.487428 4_2:-51419695 Msa0605510:CDS
TTTCAAGAGCGTTCTTCTAC+GGG 0.490904 4_2:+51422391 None:intergenic
GGAAAATTCTCTGGATCGGA+AGG 0.495526 4_2:+51419960 None:intergenic
CGGGCATGGTGTGCAGCAAA+AGG 0.496942 4_2:-51419731 Msa0605510:CDS
CAACATCAATTGTGTCTGGC+AGG 0.497094 4_2:+51419126 None:intergenic
CAATGTTGGAATAGCATACA+AGG 0.501772 4_2:+51418878 None:intergenic
TCTAGCCGTTGCTGTCTATG+AGG 0.502452 4_2:-51419000 Msa0605510:three_prime_UTR
TGCCCTGAAAAGTGGGGAAG+AGG 0.506394 4_2:-51419633 Msa0605510:CDS
GGAAACAAGATCGACATTGA+TGG 0.507185 4_2:-51419924 Msa0605510:CDS
GATTTGGGATACAGCTGGCC+AGG 0.507917 4_2:-51420266 Msa0605510:CDS
GGTTAAGAAGTCAGCTCCAA+TGG 0.508254 4_2:+51421302 None:intergenic
TCATCATTCTCGGCGACAGC+GGG 0.509207 4_2:-51422367 Msa0605510:intron
CTAGGAGTTGCTTTCTATCG+TGG 0.516699 4_2:-51420229 Msa0605510:CDS
AATCAGTACAAGGCAACCAT+TGG 0.525698 4_2:-51421318 Msa0605510:CDS
GCACCATTCACAAACCTGTA+AGG 0.531833 4_2:+51421248 None:intergenic
TTGCAGATTTGGGATACAGC+TGG 0.533863 4_2:-51420271 Msa0605510:intron
CAAAGGATGCCCTGAAAAGT+GGG 0.534379 4_2:-51419640 Msa0605510:CDS
AGGTTTCAGAAAAGAAGGCT+CGG 0.540140 4_2:-51419751 Msa0605510:CDS
AAAAGGAAAATTCTCTGGAT+CGG 0.543661 4_2:+51419956 None:intergenic
CTGCCAGACACAATTGATGT+TGG 0.557538 4_2:-51419125 Msa0605510:CDS
GGTTTCAGAAAAGAAGGCTC+GGG 0.559631 4_2:-51419750 Msa0605510:CDS
CACTCACATCCTGATGACCT+TGG 0.564551 4_2:+51419089 None:intergenic
CACGATAGAAAGCAACTCCT+AGG 0.569261 4_2:+51420230 None:intergenic
TGCATAGAAAGTTAGAGAGA+GGG 0.573221 4_2:-51422517 Msa0605510:five_prime_UTR
TTGACAACCTTAACAACTGG+AGG 0.575421 4_2:-51420159 Msa0605510:CDS
CAGGAGAGATTCCAAAGCCT+AGG 0.576665 4_2:-51420247 Msa0605510:CDS
AACAAGATCGACATTGATGG+TGG 0.578098 4_2:-51419921 Msa0605510:CDS
AAGAGCGTTCTTCTACGGGA+AGG 0.590281 4_2:+51422395 None:intergenic
AGCATTCCAAACCATAGCAA+AGG 0.595720 4_2:-51419657 Msa0605510:CDS
CAGAAAAGAAGGCTCGGGCA+TGG 0.609079 4_2:-51419745 Msa0605510:CDS
CGGGAAGGCATCGTTCAGAT+CGG 0.609490 4_2:+51422410 None:intergenic
GTCATCATTCTCGGCGACAG+CGG 0.612250 4_2:-51422368 Msa0605510:CDS
AGGAGTTGCTTTCTATCGTG+GGG 0.614079 4_2:-51420227 Msa0605510:CDS
GAAGTTTAGTAATCAGTACA+AGG 0.614358 4_2:-51421328 Msa0605510:CDS
CTGCATAGAAAGTTAGAGAG+AGG 0.614439 4_2:-51422518 Msa0605510:five_prime_UTR
GAGGGAAACAGAGTTGAAGA+CGG 0.638749 4_2:-51422499 Msa0605510:five_prime_UTR
TTGGAAACAGCAATCAGCCA+AGG 0.645424 4_2:-51419106 Msa0605510:CDS
ACAAGATCGACATTGATGGT+GGG 0.651715 4_2:-51419920 Msa0605510:CDS
TGACAACCTTAACAACTGGA+GGG 0.655521 4_2:-51420158 Msa0605510:CDS
TGATGGTGGGAACAGTAGAG+TGG 0.665695 4_2:-51419907 Msa0605510:intron
TGAAACCTCATAGACAGCAA+CGG 0.678649 4_2:+51418995 None:intergenic
CAACCTTAACAACTGGAGGG+AGG 0.688480 4_2:-51420155 Msa0605510:CDS
TCACAAAACACATACCAAAG+CGG 0.704022 4_2:-51422445 Msa0605510:five_prime_UTR
AAAGGATGCCCTGAAAAGTG+GGG 0.713593 4_2:-51419639 Msa0605510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATAATTATGATTAT+CGG + chr4_2:51419039-51419058 None:intergenic 10.0%
!! ACTTAATTTAAAAAATTGTT+TGG - chr4_2:51419509-51419528 Msa0605510:intron 10.0%
!!! TATTGAAATTTAAGTTAATA+TGG - chr4_2:51421008-51421027 Msa0605510:intron 10.0%
!!! ATATTATTTTAAAATCACTT+TGG - chr4_2:51422320-51422339 Msa0605510:intron 10.0%
!!! TTCACATATCTAAAATATAT+AGG + chr4_2:51419996-51420015 None:intergenic 15.0%
!!! GTACAAAATAATTTTTGTAT+GGG + chr4_2:51422551-51422570 None:intergenic 15.0%
!!! TGTACAAAATAATTTTTGTA+TGG + chr4_2:51422552-51422571 None:intergenic 15.0%
!! CTATAAGTAACTTAATTTAC+AGG - chr4_2:51419202-51419221 Msa0605510:intron 20.0%
!! AAATCAACTTAACATTAACA+TGG + chr4_2:51419545-51419564 None:intergenic 20.0%
!! AGATAAACATTCCAAAAAAA+GGG + chr4_2:51420215-51420234 None:intergenic 20.0%
!! AAGATAAACATTCCAAAAAA+AGG + chr4_2:51420216-51420235 None:intergenic 20.0%
!! ACATATAGATTGAATCAAAT+GGG - chr4_2:51420728-51420747 Msa0605510:intron 20.0%
!!! AATTTTCCTTTTGTTGTTAT+AGG - chr4_2:51421402-51421421 Msa0605510:intron 20.0%
!! CTTCATAAAAAATGCATTAA+GGG - chr4_2:51421786-51421805 Msa0605510:intron 20.0%
!! CAAAAAGATTCATAATCTAT+GGG + chr4_2:51422106-51422125 None:intergenic 20.0%
!!! ATCTTTTTGCTATTTGATAA+TGG - chr4_2:51422117-51422136 Msa0605510:intron 20.0%
!!! TCTTTTTGCTATTTGATAAT+GGG - chr4_2:51422118-51422137 Msa0605510:intron 20.0%
! GAAGAATAAAAATAAGCAGA+AGG + chr4_2:51419087-51419106 None:intergenic 25.0%
!!! TCATTTTTCTTATTCTTGTC+TGG - chr4_2:51419163-51419182 Msa0605510:intron 25.0%
!!! GAATTATTTGTTGTATCTAC+AGG - chr4_2:51419572-51419591 Msa0605510:intron 25.0%
! TTTGTACTAAATAGCTATTG+AGG + chr4_2:51419778-51419797 None:intergenic 25.0%
! TACAAAATACTGTGAAATAG+CGG - chr4_2:51419792-51419811 Msa0605510:intron 25.0%
!!! TGAGGTTTTAGTATTGTATA+GGG - chr4_2:51419931-51419950 Msa0605510:CDS 25.0%
!!! GGTAATGCTTTAAAAATATG+CGG - chr4_2:51419952-51419971 Msa0605510:CDS 25.0%
! TCAAAATCAAATTATGCACA+AGG + chr4_2:51420127-51420146 None:intergenic 25.0%
!!! AAATTACCAAACCCTTTTTT+TGG - chr4_2:51420201-51420220 Msa0605510:CDS 25.0%
! TCTTTCTGATATTACATAGA+TGG - chr4_2:51420232-51420251 Msa0605510:CDS 25.0%
! GATATTACATAGATGGTTTA+TGG - chr4_2:51420239-51420258 Msa0605510:CDS 25.0%
! GATTTAATTGAAGAATTCGT+AGG - chr4_2:51420360-51420379 Msa0605510:intron 25.0%
!!! ATCCTAAAGTTTGCATTTTT+TGG - chr4_2:51420517-51420536 Msa0605510:intron 25.0%
! TTCCAAAAAATGCAAACTTT+AGG + chr4_2:51420522-51420541 None:intergenic 25.0%
!!! AAGTTTGCATTTTTTGGAAA+CGG - chr4_2:51420523-51420542 Msa0605510:intron 25.0%
! AACAATTTCTCAAAAATGAC+AGG + chr4_2:51420587-51420606 None:intergenic 25.0%
! GACATATAGATTGAATCAAA+TGG - chr4_2:51420727-51420746 Msa0605510:intron 25.0%
! CATATAGATTGAATCAAATG+GGG - chr4_2:51420729-51420748 Msa0605510:intron 25.0%
!!! TGTTAGGCTGTTTAATTTTT+TGG - chr4_2:51420852-51420871 Msa0605510:intron 25.0%
! ATTCTAAATCTTGCAGATTT+GGG - chr4_2:51421066-51421085 Msa0605510:intron 25.0%
! TTGTTTCCTATAACAACAAA+AGG + chr4_2:51421411-51421430 None:intergenic 25.0%
! AAACATGTTAGATAGCAAAA+GGG + chr4_2:51421478-51421497 None:intergenic 25.0%
! GCTTCATAAAAAATGCATTA+AGG - chr4_2:51421785-51421804 Msa0605510:intron 25.0%
! ATAGGATTGATGTTTAATGA+TGG - chr4_2:51421911-51421930 Msa0605510:intron 25.0%
! ATTAAACATCAATCCTAACA+TGG + chr4_2:51421957-51421976 None:intergenic 25.0%
! TTAGGATTGATGTTTAATGA+TGG - chr4_2:51421959-51421978 Msa0605510:intron 25.0%
! TCAATCTTTGCATTATAACA+TGG + chr4_2:51422005-51422024 None:intergenic 25.0%
! TAATGCAAAGATTGATATGT+TGG - chr4_2:51422010-51422029 Msa0605510:intron 25.0%
! GCAAAAAGATTCATAATCTA+TGG + chr4_2:51422107-51422126 None:intergenic 25.0%
! AAACATAACATCAGTAACAT+TGG + chr4_2:51422158-51422177 None:intergenic 25.0%
!! ATGTTACTGATGTTATGTTT+TGG - chr4_2:51422158-51422177 Msa0605510:intron 25.0%
!! TGTTACTGATGTTATGTTTT+GGG - chr4_2:51422159-51422178 Msa0605510:intron 25.0%
!!! CTGTTTTTTTTTCACAATGT+TGG + chr4_2:51422486-51422505 None:intergenic 25.0%
! TTGTGAAAAAAAAACAGCAA+AGG - chr4_2:51422489-51422508 Msa0605510:five_prime_UTR 25.0%
TCTCTCTATCGTAAATCTTA+AGG + chr4_2:51418801-51418820 None:intergenic 30.0%
TAGATAACAAGAGTCATATC+TGG - chr4_2:51419244-51419263 Msa0605510:intron 30.0%
TATAGAGTAGCTTAATGCAT+AGG - chr4_2:51419437-51419456 Msa0605510:intron 30.0%
! GTATCCTTCGATTTTTGTAT+AGG - chr4_2:51419677-51419696 Msa0605510:CDS 30.0%
ACTTCCTATACAAAAATCGA+AGG + chr4_2:51419684-51419703 None:intergenic 30.0%
! ATTTTCACTGCAATTTTCTG+AGG - chr4_2:51419913-51419932 Msa0605510:CDS 30.0%
!! CTGAGGTTTTAGTATTGTAT+AGG - chr4_2:51419930-51419949 Msa0605510:CDS 30.0%
GAAGTTTAGTAATCAGTACA+AGG - chr4_2:51420019-51420038 Msa0605510:intron 30.0%
ATCTTCAAATTGCACTTCTT+TGG + chr4_2:51420069-51420088 None:intergenic 30.0%
! AAGAAGTGCAATTTGAAGAT+AGG - chr4_2:51420069-51420088 Msa0605510:intron 30.0%
! GGTTTGGTAATTTGTAAATC+TGG + chr4_2:51420194-51420213 None:intergenic 30.0%
AACATTCCAAAAAAAGGGTT+TGG + chr4_2:51420210-51420229 None:intergenic 30.0%
ATGTTCAACCTTCATTTAAG+AGG + chr4_2:51420392-51420411 None:intergenic 30.0%
ACTTAATACAGTAAACTACC+AGG + chr4_2:51420459-51420478 None:intergenic 30.0%
!!! AGTTTGCATTTTTTGGAAAC+GGG - chr4_2:51420524-51420543 Msa0605510:intron 30.0%
!! TATATTTTTGACGATTGCCT+TGG - chr4_2:51420610-51420629 Msa0605510:intron 30.0%
TACATACATGTGCAAACTAA+CGG + chr4_2:51420671-51420690 None:intergenic 30.0%
TAACAATCCTTAACCGAAAA+AGG + chr4_2:51420837-51420856 None:intergenic 30.0%
!! TTTTTCGGTTAAGGATTGTT+AGG - chr4_2:51420836-51420855 Msa0605510:intron 30.0%
!!! ATTTTTTGGACAGTACACTT+TGG - chr4_2:51420866-51420885 Msa0605510:intron 30.0%
TTTCCACAAGAAACAAAACA+TGG + chr4_2:51420943-51420962 None:intergenic 30.0%
CATTCTAAATCTTGCAGATT+TGG - chr4_2:51421065-51421084 Msa0605510:intron 30.0%
AAAAGGAAAATTCTCTGGAT+CGG + chr4_2:51421394-51421413 None:intergenic 30.0%
ACAACAAAAGGAAAATTCTC+TGG + chr4_2:51421399-51421418 None:intergenic 30.0%
GAAACATGTTAGATAGCAAA+AGG + chr4_2:51421479-51421498 None:intergenic 30.0%
CTGTTTAGCAGTACATATTT+AGG + chr4_2:51421550-51421569 None:intergenic 30.0%
TTCGACATTAATACCTTCTT+TGG + chr4_2:51421668-51421687 None:intergenic 30.0%
TCTTGGAAACAAATGCATAT+AGG - chr4_2:51421893-51421912 Msa0605510:intron 30.0%
TTGCATTATAACATGGCAAA+TGG + chr4_2:51421998-51422017 None:intergenic 30.0%
!! TTGGTTTGTCCATATAATAG+TGG - chr4_2:51422029-51422048 Msa0605510:intron 30.0%
!!! ATTGTTTTAGTGCGATTTGT+TGG - chr4_2:51422404-51422423 Msa0605510:exon 30.0%
!!! TTGTTTTAGTGCGATTTGTT+GGG - chr4_2:51422405-51422424 Msa0605510:exon 30.0%
TGCATAGAAAGTTAGAGAGA+GGG - chr4_2:51418830-51418849 Msa0605510:three_prime_UTR 35.0%
TCACAAAACACATACCAAAG+CGG - chr4_2:51418902-51418921 Msa0605510:three_prime_UTR 35.0%
CTCTTGAAAGTCATCATTCT+CGG - chr4_2:51418970-51418989 Msa0605510:three_prime_UTR 35.0%
TCTCGAACTCTTCAATTCTA+GGG - chr4_2:51419009-51419028 Msa0605510:three_prime_UTR 35.0%
TTGACATGCAAGCTCAAAAT+TGG - chr4_2:51419129-51419148 Msa0605510:CDS 35.0%
!! TAGTGTTGTTGATGATTTGC+AGG - chr4_2:51419628-51419647 Msa0605510:CDS 35.0%
!! AGTGTTGTTGATGATTTGCA+GGG - chr4_2:51419629-51419648 Msa0605510:CDS 35.0%
AGGAAGTCAGTATTATGTTC+AGG - chr4_2:51419697-51419716 Msa0605510:CDS 35.0%
GGAAGTCAGTATTATGTTCA+GGG - chr4_2:51419698-51419717 Msa0605510:CDS 35.0%
CGAATAGTACTATTGCATAG+CGG - chr4_2:51419729-51419748 Msa0605510:CDS 35.0%
! GCTATAACACTTTTGCATAG+CGG - chr4_2:51419825-51419844 Msa0605510:intron 35.0%
! AATCTGGCCTTTCATTTACA+AGG + chr4_2:51420178-51420197 None:intergenic 35.0%
! AAGCCTTTTCCAACTAAATG+GGG + chr4_2:51420288-51420307 None:intergenic 35.0%
! CAAGCCTTTTCCAACTAAAT+GGG + chr4_2:51420289-51420308 None:intergenic 35.0%
!! AAATGCAAACTTTAGGATGC+TGG + chr4_2:51420515-51420534 None:intergenic 35.0%
!!! CATTTTAAAGTCATGTGCCA+AGG + chr4_2:51420630-51420649 None:intergenic 35.0%
! CTAATACTGAAAGAGCATGA+CGG + chr4_2:51420916-51420935 None:intergenic 35.0%
!!! CATCCATGTTTTGTTTCTTG+TGG - chr4_2:51420937-51420956 Msa0605510:intron 35.0%
CATTTGACAACCTTAACAAC+TGG - chr4_2:51421185-51421204 Msa0605510:intron 35.0%
AACTTTATGATCACTGCATC+AGG - chr4_2:51421359-51421378 Msa0605510:intron 35.0%
AGGTGTTTCATGAATGTATC+TGG + chr4_2:51421530-51421549 None:intergenic 35.0%
TGGCAGATGTCTCAAAATAT+GGG + chr4_2:51421648-51421667 None:intergenic 35.0%
TTGGCAGATGTCTCAAAATA+TGG + chr4_2:51421649-51421668 None:intergenic 35.0%
GGGTATATCTGATTATGAGA+TGG - chr4_2:51421806-51421825 Msa0605510:intron 35.0%
GATTATGAGATGGTGTTCAT+TGG - chr4_2:51421816-51421835 Msa0605510:intron 35.0%
AGTGAACTAAAACAACTAGC+AGG + chr4_2:51421862-51421881 None:intergenic 35.0%
TTCACTATATCCATGTCTCT+TGG - chr4_2:51421876-51421895 Msa0605510:intron 35.0%
ATCAATCCTAACATGGCAAA+TGG + chr4_2:51421950-51421969 None:intergenic 35.0%
TTTCCAACATCAATTGTGTC+TGG + chr4_2:51422228-51422247 None:intergenic 35.0%
CAATGTTGGAATAGCATACA+AGG + chr4_2:51422472-51422491 None:intergenic 35.0%
CTGCATAGAAAGTTAGAGAG+AGG - chr4_2:51418829-51418848 Msa0605510:three_prime_UTR 40.0%
!! TTTCAAGAGCGTTCTTCTAC+GGG + chr4_2:51418959-51418978 None:intergenic 40.0%
!! CTTTCAAGAGCGTTCTTCTA+CGG + chr4_2:51418960-51418979 None:intergenic 40.0%
CTCTCGAACTCTTCAATTCT+AGG - chr4_2:51419008-51419027 Msa0605510:three_prime_UTR 40.0%
ACATCTTCGGTCAAAAGTCT+CGG - chr4_2:51419402-51419421 Msa0605510:intron 40.0%
!! TTGTTGATGATTTGCAGGGT+GGG - chr4_2:51419633-51419652 Msa0605510:CDS 40.0%
ATACTGTGAAATAGCGGCTA+TGG - chr4_2:51419798-51419817 Msa0605510:intron 40.0%
AATCAGTACAAGGCAACCAT+TGG - chr4_2:51420029-51420048 Msa0605510:intron 40.0%
! AGATAGGCTTTTCACCTTAC+AGG - chr4_2:51420085-51420104 Msa0605510:intron 40.0%
TCACCTTACAGGTTTGTGAA+TGG - chr4_2:51420096-51420115 Msa0605510:intron 40.0%
! TTTACAAGGCTTGGTCATGA+AGG + chr4_2:51420164-51420183 None:intergenic 40.0%
! GACCAAGCCTTGTAAATGAA+AGG - chr4_2:51420168-51420187 Msa0605510:CDS 40.0%
! CTTTTCCAACTAAATGGGGT+CGG + chr4_2:51420284-51420303 None:intergenic 40.0%
! CCAAGCCTTTTCCAACTAAA+TGG + chr4_2:51420290-51420309 None:intergenic 40.0%
CCATTTAGTTGGAAAAGGCT+TGG - chr4_2:51420287-51420306 Msa0605510:intron 40.0%
GGTCACAACCTCTTAAATGA+AGG - chr4_2:51420381-51420400 Msa0605510:intron 40.0%
ACATGTGCAAACTAACGGTT+AGG + chr4_2:51420666-51420685 None:intergenic 40.0%
! AGTTTTTCCGTTGCACTCTT+AGG - chr4_2:51420809-51420828 Msa0605510:intron 40.0%
!!! TTAGGAGCCTTTTTCGGTTA+AGG - chr4_2:51420827-51420846 Msa0605510:intron 40.0%
! TTTTGGACAGTACACTTTGG+TGG - chr4_2:51420869-51420888 Msa0605510:intron 40.0%
TTTGGACAGTACACTTTGGT+GGG - chr4_2:51420870-51420889 Msa0605510:intron 40.0%
! TAGGAGTTGCTTTCTATCGT+GGG - chr4_2:51421119-51421138 Msa0605510:intron 40.0%
TTGACAACCTTAACAACTGG+AGG - chr4_2:51421188-51421207 Msa0605510:intron 40.0%
TGACAACCTTAACAACTGGA+GGG - chr4_2:51421189-51421208 Msa0605510:intron 40.0%
GGAAACAAGATCGACATTGA+TGG - chr4_2:51421423-51421442 Msa0605510:intron 40.0%
AACAAGATCGACATTGATGG+TGG - chr4_2:51421426-51421445 Msa0605510:intron 40.0%
! ACAAGATCGACATTGATGGT+GGG - chr4_2:51421427-51421446 Msa0605510:intron 40.0%
CATGTTAGATAGCAAAAGGG+AGG + chr4_2:51421475-51421494 None:intergenic 40.0%
ACACATAAGTTCTTGTGCAC+AGG - chr4_2:51421576-51421595 Msa0605510:intron 40.0%
TGCACAGGTTTCAGAAAAGA+AGG - chr4_2:51421591-51421610 Msa0605510:intron 40.0%
AGGTTTCAGAAAAGAAGGCT+CGG - chr4_2:51421596-51421615 Msa0605510:intron 40.0%
! TTTGAGACATCTGCCAAAGA+AGG - chr4_2:51421652-51421671 Msa0605510:intron 40.0%
AGCATTCCAAACCATAGCAA+AGG - chr4_2:51421690-51421709 Msa0605510:intron 40.0%
GCATTTGTTTCCAAGAGACA+TGG + chr4_2:51421889-51421908 None:intergenic 40.0%
CATGAACCATTTGCCATGTT+AGG - chr4_2:51421941-51421960 Msa0605510:intron 40.0%
CTTTGCACGCCACTATTATA+TGG + chr4_2:51422041-51422060 None:intergenic 40.0%
! TTTGGGATTTGTTCTCCATG+TGG - chr4_2:51422176-51422195 Msa0605510:intron 40.0%
AACAAGCACGAATTTCCACA+TGG + chr4_2:51422194-51422213 None:intergenic 40.0%
TGAAACCTCATAGACAGCAA+CGG + chr4_2:51422355-51422374 None:intergenic 40.0%
GAGGGAAACAGAGTTGAAGA+CGG - chr4_2:51418848-51418867 Msa0605510:three_prime_UTR 45.0%
GGATCAAGAGTTAACCGCTT+TGG + chr4_2:51418919-51418938 None:intergenic 45.0%
TCTGACACTGACACATGTGT+AGG + chr4_2:51419331-51419350 None:intergenic 45.0%
ATGTGTCAGTGTCAGACATG+CGG - chr4_2:51419335-51419354 Msa0605510:intron 45.0%
TTGGTCACTGGACACATCTT+CGG - chr4_2:51419389-51419408 Msa0605510:intron 45.0%
!! GTTGTTGATGATTTGCAGGG+TGG - chr4_2:51419632-51419651 Msa0605510:CDS 45.0%
!! TGTTGATGATTTGCAGGGTG+GGG - chr4_2:51419634-51419653 Msa0605510:CDS 45.0%
GGTTAAGAAGTCAGCTCCAA+TGG + chr4_2:51420048-51420067 None:intergenic 45.0%
GCACCATTCACAAACCTGTA+AGG + chr4_2:51420102-51420121 None:intergenic 45.0%
GGCCTTTCATTTACAAGGCT+TGG + chr4_2:51420173-51420192 None:intergenic 45.0%
ACTAAATGGGGTCGGATACA+TGG + chr4_2:51420276-51420295 None:intergenic 45.0%
TGTATCCGACCCCATTTAGT+TGG - chr4_2:51420276-51420295 Msa0605510:intron 45.0%
CGACCCCATTTAGTTGGAAA+AGG - chr4_2:51420282-51420301 Msa0605510:intron 45.0%
GGCGTGTTTAATGTACACAC+AGG + chr4_2:51420438-51420457 None:intergenic 45.0%
GTGTGTACATTAAACACGCC+TGG - chr4_2:51420438-51420457 Msa0605510:intron 45.0%
! TTTGGAAACGGGCTTGTGTA+TGG - chr4_2:51420535-51420554 Msa0605510:intron 45.0%
! TTGGAAACGGGCTTGTGTAT+GGG - chr4_2:51420536-51420555 Msa0605510:intron 45.0%
! AAAGGCTCCTAAGAGTGCAA+CGG + chr4_2:51420819-51420838 None:intergenic 45.0%
! GCACTCTTAGGAGCCTTTTT+CGG - chr4_2:51420821-51420840 Msa0605510:intron 45.0%
TTGGACAGTACACTTTGGTG+GGG - chr4_2:51420871-51420890 Msa0605510:intron 45.0%
! TTGCAGATTTGGGATACAGC+TGG - chr4_2:51421076-51421095 Msa0605510:intron 45.0%
AGAAAGCAACTCCTAGGCTT+TGG + chr4_2:51421114-51421133 None:intergenic 45.0%
CACGATAGAAAGCAACTCCT+AGG + chr4_2:51421120-51421139 None:intergenic 45.0%
! CTAGGAGTTGCTTTCTATCG+TGG - chr4_2:51421118-51421137 Msa0605510:intron 45.0%
! AGGAGTTGCTTTCTATCGTG+GGG - chr4_2:51421120-51421139 Msa0605510:intron 45.0%
ATTCCTCCCTCCAGTTGTTA+AGG + chr4_2:51421198-51421217 None:intergenic 45.0%
GGAAAATTCTCTGGATCGGA+AGG + chr4_2:51421390-51421409 None:intergenic 45.0%
GGTTTCAGAAAAGAAGGCTC+GGG - chr4_2:51421597-51421616 Msa0605510:intron 45.0%
! TTTCAGGGCATCCTTTGCTA+TGG + chr4_2:51421704-51421723 None:intergenic 45.0%
CAAAGGATGCCCTGAAAAGT+GGG - chr4_2:51421707-51421726 Msa0605510:intron 45.0%
AAAGGATGCCCTGAAAAGTG+GGG - chr4_2:51421708-51421727 Msa0605510:intron 45.0%
!! TTCCTCTTCCCCACTTTTCA+GGG + chr4_2:51421719-51421738 None:intergenic 45.0%
ATGAGATGGTGTTCATTGGC+TGG - chr4_2:51421820-51421839 Msa0605510:intron 45.0%
! TGAGATGGTGTTCATTGGCT+GGG - chr4_2:51421821-51421840 Msa0605510:intron 45.0%
CAACATCAATTGTGTCTGGC+AGG + chr4_2:51422224-51422243 None:intergenic 45.0%
CTGCCAGACACAATTGATGT+TGG - chr4_2:51422222-51422241 Msa0605510:intron 45.0%
TTGGAAACAGCAATCAGCCA+AGG - chr4_2:51422241-51422260 Msa0605510:intron 45.0%
!! CGATTTGTTGGGTGCTTGTT+TGG - chr4_2:51422416-51422435 Msa0605510:exon 45.0%
!! AAGAGCGTTCTTCTACGGGA+AGG + chr4_2:51418955-51418974 None:intergenic 50.0%
TGTGTCAGTGTCAGACATGC+GGG - chr4_2:51419336-51419355 Msa0605510:intron 50.0%
AGACATGCGGGACATTGTGT+AGG - chr4_2:51419348-51419367 Msa0605510:intron 50.0%
ACACGACACATGTTGGTCAC+TGG - chr4_2:51419377-51419396 Msa0605510:intron 50.0%
CTGTGAAATAGCGGCTATGG+CGG - chr4_2:51419801-51419820 Msa0605510:intron 50.0%
CGGGCTTGTGTATGGGATTT+AGG - chr4_2:51420543-51420562 Msa0605510:intron 50.0%
!! CTAGGCTTTGGAATCTCTCC+TGG + chr4_2:51421102-51421121 None:intergenic 50.0%
CAGGAGAGATTCCAAAGCCT+AGG - chr4_2:51421100-51421119 Msa0605510:intron 50.0%
CAACCTTAACAACTGGAGGG+AGG - chr4_2:51421192-51421211 Msa0605510:intron 50.0%
!! TGATGGTGGGAACAGTAGAG+TGG - chr4_2:51421440-51421459 Msa0605510:intron 50.0%
! GGGCATCCTTTGCTATGGTT+TGG + chr4_2:51421699-51421718 None:intergenic 50.0%
GCAAAGGATGCCCTGAAAAG+TGG - chr4_2:51421706-51421725 Msa0605510:intron 50.0%
!! CTTCCTCTTCCCCACTTTTC+AGG + chr4_2:51421720-51421739 None:intergenic 50.0%
! GAGATGGTGTTCATTGGCTG+GGG - chr4_2:51421822-51421841 Msa0605510:intron 50.0%
! AGATGGTGTTCATTGGCTGG+GGG - chr4_2:51421823-51421842 Msa0605510:intron 50.0%
!! TTGGCTGGGGGAGCATATTT+TGG - chr4_2:51421835-51421854 Msa0605510:intron 50.0%
AGCAATCAGCCAAGGTCATC+AGG - chr4_2:51422249-51422268 Msa0605510:intron 50.0%
CACTCACATCCTGATGACCT+TGG + chr4_2:51422261-51422280 None:intergenic 50.0%
TCTAGCCGTTGCTGTCTATG+AGG - chr4_2:51422347-51422366 Msa0605510:intron 50.0%
!! CGGGAAGGCATCGTTCAGAT+CGG + chr4_2:51418940-51418959 None:intergenic 55.0%
GTCATCATTCTCGGCGACAG+CGG - chr4_2:51418979-51418998 Msa0605510:three_prime_UTR 55.0%
TCATCATTCTCGGCGACAGC+GGG - chr4_2:51418980-51418999 Msa0605510:three_prime_UTR 55.0%
GACAGCGACACGACACATGT+TGG - chr4_2:51419370-51419389 Msa0605510:intron 55.0%
! GATTTGGGATACAGCTGGCC+AGG - chr4_2:51421081-51421100 Msa0605510:intron 55.0%
CAGAAAAGAAGGCTCGGGCA+TGG - chr4_2:51421602-51421621 Msa0605510:intron 55.0%
TGCCCTGAAAAGTGGGGAAG+AGG - chr4_2:51421714-51421733 Msa0605510:intron 55.0%
CGGGCATGGTGTGCAGCAAA+AGG - chr4_2:51421616-51421635 Msa0605510:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 51418790 51422579 51418790 ID=Msa0605510;Name=Msa0605510
chr4_2 mRNA 51418790 51422579 51418790 ID=Msa0605510-mRNA-1;Parent=Msa0605510;Name=Msa0605510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=159|0.8|1|1|1|1|6|295|197
chr4_2 exon 51418790 51419151 51418790 ID=Msa0605510-mRNA-1:exon:12305;Parent=Msa0605510-mRNA-1
chr4_2 exon 51419626 51419771 51419626 ID=Msa0605510-mRNA-1:exon:12304;Parent=Msa0605510-mRNA-1
chr4_2 exon 51419908 51419988 51419908 ID=Msa0605510-mRNA-1:exon:12303;Parent=Msa0605510-mRNA-1
chr4_2 exon 51420141 51420287 51420141 ID=Msa0605510-mRNA-1:exon:12302;Parent=Msa0605510-mRNA-1
chr4_2 exon 51421263 51421362 51421263 ID=Msa0605510-mRNA-1:exon:12301;Parent=Msa0605510-mRNA-1
chr4_2 exon 51422368 51422579 51422368 ID=Msa0605510-mRNA-1:exon:12300;Parent=Msa0605510-mRNA-1
chr4_2 five_prime_UTR 51422421 51422579 51422421 ID=Msa0605510-mRNA-1:five_prime_utr;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51422368 51422420 51422368 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51421263 51421362 51421263 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51420141 51420287 51420141 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51419908 51419988 51419908 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51419626 51419771 51419626 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 CDS 51419085 51419151 51419085 ID=Msa0605510-mRNA-1:cds;Parent=Msa0605510-mRNA-1
chr4_2 three_prime_UTR 51418790 51419084 51418790 ID=Msa0605510-mRNA-1:three_prime_utr;Parent=Msa0605510-mRNA-1
Gene Sequence

>Msa0605510

ATGCCTTCCCGTAGAAGAACGCTCTTGAAAGTCATCATTCTCGGCGACAGCGGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCTGACTTCTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAGGAGAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGGGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGCAAATCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATCGACATTGATGGTGGGAACAGTAGAGTGGTTTCAGAAAAGAAGGCTCGGGCATGGTGTGCAGCAAAAGGAAATATCCCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTCGAAGAAGCATTCCAAACCATAGCAAAGGATGCCCTGAAAAGTGGGGAAGAGGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAATCAGCCAAGGTCATCAGGATGTGAGTGCTGA
Protein sequence

>Msa0605510

MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSNQPRSSGCEC*