AlfalfaGEDB | Msa1375380

M. sativa cultivar zhongmu-4 / Msa1375380

KEGG: K11153|K19329
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375380	KEH21075.1	93.805	113	7	0	1	113	1	113	2.61e-69	217

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375380	sp\|A2RVM0\|TIC32_ARATH	66.372	113	38	0	1	113	1	113	3.12e-51	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375380	A0A072U5E0	93.805	113	7	0	1	113	1	113	1.25e-69	217

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1375380	0.819179	1.330279e-52	-8.615850e-47
Msa0007440	Msa1375380	0.806259	8.972374e-50	-8.615850e-47
Msa0020930	Msa1375380	0.823370	1.436743e-53	-8.615850e-47
Msa0021510	Msa1375380	0.815913	7.246634e-52	-8.615850e-47
Msa0033110	Msa1375380	0.830956	2.193075e-55	-8.615850e-47
Msa0033260	Msa1375380	0.831821	1.343216e-55	-8.615850e-47
Msa0036140	Msa1375380	0.839612	1.427905e-57	-8.615850e-47
Msa0037540	Msa1375380	-0.827985	1.156205e-54	-8.615850e-47
Msa0037570	Msa1375380	-0.832839	7.519370e-56	-8.615850e-47
Msa0037590	Msa1375380	-0.819818	9.509636e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375380	MtrunA17_Chr8g0386971	93.805	113	7	0	1	113	1	113	2.80e-72	217
Msa1375380	MtrunA17_Chr1g0202891	71.681	113	32	0	1	113	1	113	5.48e-51	163
Msa1375380	MtrunA17_Chr1g0202931	69.027	113	35	0	1	113	1	113	7.58e-51	162
Msa1375380	MtrunA17_Chr1g0202871	69.912	113	34	0	1	113	1	113	3.22e-50	161
Msa1375380	MtrunA17_Chr1g0202861	65.487	113	39	0	1	113	42	154	2.64e-47	155
Msa1375380	MtrunA17_Chr6g0470321	66.667	105	35	0	9	113	17	121	9.69e-46	150
Msa1375380	MtrunA17_Chr6g0470501	67.308	104	34	0	10	113	37	140	8.90e-45	148
Msa1375380	MtrunA17_Chr7g0262941	54.128	109	50	0	5	113	10	118	1.55e-36	126
Msa1375380	MtrunA17_Chr1g0182541	53.211	109	51	0	5	113	10	118	3.24e-36	125
Msa1375380	MtrunA17_Chr3g0117241	46.957	115	58	1	2	113	7	121	3.54e-33	113

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375380	AT4G23430.4	66.372	113	38	1	113	1	113	2.04e-52	167
Msa1375380	AT4G23430.3	66.372	113	38	1	113	1	113	2.09e-52	167
Msa1375380	AT4G23430.2	66.372	113	38	1	113	1	113	3.17e-52	167
Msa1375380	AT4G23430.1	66.372	113	38	1	113	1	113	3.58e-52	166
Msa1375380	AT4G23420.5	66.372	113	38	1	113	1	113	4.02e-52	165
Msa1375380	AT4G23420.4	66.372	113	38	1	113	1	113	5.62e-52	164
Msa1375380	AT4G23420.1	66.372	113	38	1	113	1	113	1.88e-51	164
Msa1375380	AT4G23420.2	66.372	113	38	1	113	1	113	1.88e-51	164
Msa1375380	AT4G11410.2	69.027	113	35	1	113	1	113	3.95e-51	162
Msa1375380	AT4G11410.1	69.027	113	35	1	113	1	113	1.15e-50	162

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Find 93 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCAATCTTAGCAGC+TGG	0.481983	tig0019653:-90257	None:intergenic
AAACTGTAAGGGAATGCAAC+CGG	0.434447	tig0019653:+91086	Msa1375380:three_prime_UTR
AAAGGTTTGTCAACAGAAAA+TGG	0.291840	tig0019653:-91045	None:intergenic
AAATTGGTACTTGAAATTGT+CGG	0.527541	tig0019653:+90425	Msa1375380:three_prime_UTR
AACAATTGTACCAGGATGAA+GGG	0.577686	tig0019653:-91788	None:intergenic
AACAATTTCAAGAACCAAGT+TGG	0.449123	tig0019653:+90692	Msa1375380:three_prime_UTR
AACTGTAAGGGAATGCAACC+GGG	0.543989	tig0019653:+91087	Msa1375380:three_prime_UTR
AACTTGGTTCTTGAAATTGT+TGG	0.434767	tig0019653:-90690	None:intergenic
AAGTAACAATGCAGGGACGA+TGG	0.645747	tig0019653:+90830	Msa1375380:three_prime_UTR
AATAAAATCTGTGCATCCAT+TGG	0.433029	tig0019653:+90513	Msa1375380:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTAGTAATAATGTTCCAG+TGG	+	tig0019653:89758-89777	Msa1375380:five_prime_UTR	30.0%
AATTGGTACTTGAAATTGTC+GGG	+	tig0019653:90426-90445	Msa1375380:three_prime_UTR	30.0%
TAAAGATTTCGATAACGCAA+GGG	-	tig0019653:90467-90486	None:intergenic	30.0%
TTAAAGATTTCGATAACGCA+AGG	-	tig0019653:90468-90487	None:intergenic	30.0%
AATAAAATCTGTGCATCCAT+TGG	+	tig0019653:90513-90532	Msa1375380:three_prime_UTR	30.0%
AACAATTTCAAGAACCAAGT+TGG	+	tig0019653:90692-90711	Msa1375380:three_prime_UTR	30.0%
GAGTGAATAAATAACCAACT+TGG	-	tig0019653:90709-90728	None:intergenic	30.0%
AAAGGTTTGTCAACAGAAAA+TGG	-	tig0019653:91048-91067	None:intergenic	30.0%
GATAGTTATTGTATCATCAG+AGG	+	tig0019653:91117-91136	Msa1375380:three_prime_UTR	30.0%
GTATCTGTAAAGAATCAAAC+AGG	-	tig0019653:91348-91367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019653	gene	89726	92971	89726	ID=Msa1375380;Name=Msa1375380
tig0019653	mRNA	89726	92971	89726	ID=Msa1375380-mRNA-1;Parent=Msa1375380;Name=Msa1375380-mRNA-1;_AED=0.11;_eAED=0.11;_QI=221\|1\|1\|1\|1\|0.85\|7\|1411\|113
tig0019653	exon	89726	90052	89726	ID=Msa1375380-mRNA-1:exon:4433;Parent=Msa1375380-mRNA-1
tig0019653	exon	90132	90912	90132	ID=Msa1375380-mRNA-1:exon:4434;Parent=Msa1375380-mRNA-1
tig0019653	exon	91044	91197	91044	ID=Msa1375380-mRNA-1:exon:4435;Parent=Msa1375380-mRNA-1
tig0019653	exon	91364	91442	91364	ID=Msa1375380-mRNA-1:exon:4436;Parent=Msa1375380-mRNA-1
tig0019653	exon	91760	91844	91760	ID=Msa1375380-mRNA-1:exon:4437;Parent=Msa1375380-mRNA-1
tig0019653	exon	92298	92344	92298	ID=Msa1375380-mRNA-1:exon:4438;Parent=Msa1375380-mRNA-1
tig0019653	exon	92471	92971	92471	ID=Msa1375380-mRNA-1:exon:4439;Parent=Msa1375380-mRNA-1
tig0019653	five_prime_UTR	89726	89946	89726	ID=Msa1375380-mRNA-1:five_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	CDS	89947	90052	89947	ID=Msa1375380-mRNA-1:cds;Parent=Msa1375380-mRNA-1
tig0019653	CDS	90132	90367	90132	ID=Msa1375380-mRNA-1:cds;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	90368	90912	90368	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	91044	91197	91044	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	91364	91442	91364	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	91760	91844	91760	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	92298	92344	92298	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1
tig0019653	three_prime_UTR	92471	92971	92471	ID=Msa1375380-mRNA-1:three_prime_utr;Parent=Msa1375380-mRNA-1

Gene Sequence	>Msa1375380 ATGTGGTTTATTGGTTGGAAAGGACCATCTGGATTCTCAGCTTCATCAACTGCCGAACAAGTCACTCATGGAATTGATGGAACCTCTCTCACTGCAATCATCACTGGAGCATCAAGTGGTCTTGGTCTGGAAACAACAAGGATTCTTGCTATGCGTGGTGTACATGTTGTTATGGCAGTTAGGAATGTGAAAAATGGTATAGATATCAAAGAAATGTTACTTAAGGAAATTCCAGCTGCTAAGATTGATGTTTTTGAGTTAGATCTTAGCTCTTTCGCATCTGTTAGGAAATTCGCAGCAGATTTTAATTCCTCTGGTCTTCCACTCAATATTCTAATGTAA
Protein sequence	>Msa1375380 MWFIGWKGPSGFSASSTAEQVTHGIDGTSLTAIITGASSGLGLETTRILAMRGVHVVMAVRNVKNGIDIKEMLLKEIPAAKIDVFELDLSSFASVRKFAADFNSSGLPLNILM*