AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0518440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518440 MtrunA17_Chr3g0130561 99.539 217 1 0 1 217 1 217 1.56e-150 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0518440 AT5G09260.1 78.082 219 43 3 1 217 1 216 3.39e-115 327
Msa0518440 AT5G63880.1 73.636 220 54 2 1 217 1 219 2.87e-110 315
Msa0518440 AT5G63880.2 66.393 244 54 3 1 217 1 243 1.48e-104 301

Find 62 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGAGAATTGAAAT+TGG 0.195549 3_4:+70279147 None:intergenic
AGAAGATGAAGAGGAGATTT+TGG 0.201044 3_4:-70277349 Msa0518440:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 3_4:-70277739 Msa0518440:CDS
CTGTTGCCTCATGCAGTTAC+TGG 0.256201 3_4:-70275483 Msa0518440:three_prime_UTR
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 3_4:+70279018 None:intergenic
GTAAAATTGTTTCACTCCTT+TGG 0.289606 3_4:+70275340 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 3_4:+70277695 None:intergenic
AAATATGTGAGGGACAAATA+AGG 0.309245 3_4:+70279254 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 3_4:-70277673 Msa0518440:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 3_4:+70275816 None:intergenic
AAAAGATGAGAATTGAAATT+GGG 0.381225 3_4:+70279148 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 3_4:-70277331 Msa0518440:CDS
CTTTCCATTTCTATTTGATA+AGG 0.391434 3_4:-70275396 Msa0518440:three_prime_UTR
GTCGTTTCCAACAGCAGTTT+CGG 0.399899 3_4:+70279199 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 3_4:-70278221 Msa0518440:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 3_4:-70277387 Msa0518440:CDS
CGATCTACGTCCGTTACCTT+AGG 0.414802 3_4:+70279062 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 3_4:+70275744 None:intergenic
GAAACCTTATCAAATAGAAA+TGG 0.429916 3_4:+70275392 None:intergenic
ATGCACACACTATTTATTTG+AGG 0.444815 3_4:-70275246 Msa0518440:three_prime_UTR
AATATGTGAGGGACAAATAA+GGG 0.468508 3_4:+70279255 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 3_4:-70277386 Msa0518440:CDS
TTGCTCAACATTTATAAGCC+AGG 0.478759 3_4:+70278150 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 3_4:+70279019 None:intergenic
GAGGTATAATGACTTGAGAA+TGG 0.487312 3_4:-70275274 Msa0518440:three_prime_UTR
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 3_4:-70277735 Msa0518440:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 3_4:-70275601 Msa0518440:intron
GCAAACCAAAGTGTAGCATC+TGG 0.514076 3_4:-70275536 Msa0518440:three_prime_UTR
ATTGTTATAAATGTATAATG+AGG 0.515076 3_4:-70275293 Msa0518440:three_prime_UTR
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 3_4:+70275752 None:intergenic
ATTTACAAATCGAAATCGAT+GGG 0.515535 3_4:-70279104 Msa0518440:exon
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 3_4:-70278231 Msa0518440:CDS
GGGTATTTGTGTAAAGTGAC+AGG 0.521083 3_4:-70279381 None:intergenic
TGACAAGGTTGACGAAAAGT+TGG 0.521454 3_4:-70275793 Msa0518440:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 3_4:-70279006 Msa0518440:intron
ATTATCAGCAGAAGATGAAG+AGG 0.529769 3_4:-70277358 Msa0518440:CDS
AAACAGACCGAAACTGCTGT+TGG 0.545151 3_4:-70279206 Msa0518440:five_prime_UTR
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 3_4:+70275756 None:intergenic
AGTGACAGGAAACAACTCTC+TGG 0.553316 3_4:-70279367 Msa0518440:five_prime_UTR
AGAAAGAGAGAAATATGTGA+GGG 0.553808 3_4:+70279244 None:intergenic
AATTTACAAATCGAAATCGA+TGG 0.565183 3_4:-70279105 Msa0518440:exon
GAAGACCAGATGCTACACTT+TGG 0.566982 3_4:+70275531 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 3_4:+70275585 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 3_4:-70278168 Msa0518440:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 3_4:+70275807 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 3_4:-70277385 Msa0518440:CDS
TATATTCGTGAAGAAACCTA+AGG 0.587486 3_4:-70279078 Msa0518440:CDS
AAGAAAGAGAGAAATATGTG+AGG 0.591113 3_4:+70279243 None:intergenic
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 3_4:-70278230 Msa0518440:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 3_4:+70278207 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 3_4:-70277760 Msa0518440:CDS
TTCGATTTGTAAATTCGATG+AGG 0.607402 3_4:+70279113 None:intergenic
TCCTAGCACAGTTCCTGACA+AGG 0.608316 3_4:-70275808 Msa0518440:CDS
TGAGGCAACAGAATTGATAG+TGG 0.610237 3_4:+70275495 None:intergenic
GTTTGAGAACTTGGAAACCC+AGG 0.622553 3_4:-70277322 Msa0518440:intron
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 3_4:-70279072 Msa0518440:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 3_4:+70275737 None:intergenic
AAAACTCCAGTAACTGCATG+AGG 0.644252 3_4:+70275477 None:intergenic
CCTTCTTGATGTTCCAACCA+AGG 0.644842 3_4:-70275769 Msa0518440:CDS
CCTTGGTTGGAACATCAAGA+AGG 0.649857 3_4:+70275769 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 3_4:-70275610 Msa0518440:intron
TTTACAAATCGAAATCGATG+GGG 0.717126 3_4:-70279103 Msa0518440:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGAAATTTTTCAAT+CGG + chr3_4:70277876-70277895 None:intergenic 10.0%
!!! CTTTTTTATTTTATTTTCTT+TGG + chr3_4:70278965-70278984 None:intergenic 10.0%
!!! TTTTCTGATAATTACTTATT+AGG - chr3_4:70275697-70275716 Msa0518440:intron 15.0%
!! TTTCTGATAATTACTTATTA+GGG - chr3_4:70275698-70275717 Msa0518440:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG + chr3_4:70276028-70276047 None:intergenic 15.0%
!! TTTATATTCATGTTAAAAGA+GGG + chr3_4:70276783-70276802 None:intergenic 15.0%
!! ATTTATATTCATGTTAAAAG+AGG + chr3_4:70276784-70276803 None:intergenic 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG + chr3_4:70277820-70277839 None:intergenic 15.0%
!! AAATTAGGAATATGATATAA+AGG - chr3_4:70278682-70278701 Msa0518440:intron 15.0%
!! ATTGTTATAAATGTATAATG+AGG - chr3_4:70279326-70279345 Msa0518440:five_prime_UTR 15.0%
!!! TTTTTTAGTTTTTTCTGTTG+AGG + chr3_4:70275451-70275470 None:intergenic 20.0%
!! AAAAGATGAGAATTGAAATT+GGG + chr3_4:70275474-70275493 None:intergenic 20.0%
!! AATAACAGATATGAAATTGA+GGG + chr3_4:70275654-70275673 None:intergenic 20.0%
!! ATGGACTTATATGTATAAAT+AGG - chr3_4:70275834-70275853 Msa0518440:CDS 20.0%
!! TCAAGAACTGTAATAAATAT+CGG - chr3_4:70275948-70275967 Msa0518440:intron 20.0%
!!! TAATATAGCGTTTTAGATTT+TGG - chr3_4:70276239-70276258 Msa0518440:intron 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG - chr3_4:70276539-70276558 Msa0518440:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG + chr3_4:70276814-70276833 None:intergenic 20.0%
!!! GATACTTACATTTATTTTGT+TGG - chr3_4:70276820-70276839 Msa0518440:intron 20.0%
!! TTTAATCATAGTATATGGAA+AGG - chr3_4:70277397-70277416 Msa0518440:intron 20.0%
!! AACCTTTAGATTAAAATAGA+TGG - chr3_4:70277556-70277575 Msa0518440:intron 20.0%
!! TAACAATGAAAATAAAGATC+TGG + chr3_4:70277708-70277727 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG - chr3_4:70277789-70277808 Msa0518440:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG - chr3_4:70277904-70277923 Msa0518440:intron 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG + chr3_4:70277934-70277953 None:intergenic 20.0%
!! AAACATTGAATTCAATTGTT+TGG - chr3_4:70278599-70278618 Msa0518440:intron 20.0%
!! GAGGTTATAAATTCAAAATT+AGG - chr3_4:70278667-70278686 Msa0518440:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG - chr3_4:70278899-70278918 Msa0518440:intron 20.0%
! CAAAAGATGAGAATTGAAAT+TGG + chr3_4:70275475-70275494 None:intergenic 25.0%
! AATTTACAAATCGAAATCGA+TGG - chr3_4:70275514-70275533 Msa0518440:three_prime_UTR 25.0%
! ATTTACAAATCGAAATCGAT+GGG - chr3_4:70275515-70275534 Msa0518440:three_prime_UTR 25.0%
! GAATAACAGATATGAAATTG+AGG + chr3_4:70275655-70275674 None:intergenic 25.0%
! TGAACAATTGAACTAAAGTT+TGG - chr3_4:70275732-70275751 Msa0518440:CDS 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG - chr3_4:70276215-70276234 Msa0518440:intron 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG - chr3_4:70276544-70276563 Msa0518440:intron 25.0%
! AATGTTTATCTCACTTTGTA+TGG + chr3_4:70276927-70276946 None:intergenic 25.0%
!! ATTGAGATTTTTGTTCTGTT+GGG - chr3_4:70277128-70277147 Msa0518440:intron 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG - chr3_4:70277213-70277232 Msa0518440:intron 25.0%
! AAGGAAATTAATGCAATACT+TGG - chr3_4:70277232-70277251 Msa0518440:intron 25.0%
! AGGAAATTAATGCAATACTT+GGG - chr3_4:70277233-70277252 Msa0518440:intron 25.0%
!! TATGAATGGATTTATAAGTC+AGG + chr3_4:70277354-70277373 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG + chr3_4:70277561-70277580 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAA+AGG + chr3_4:70277617-70277636 None:intergenic 25.0%
! GTAACATTAAAACAAGATGA+AGG - chr3_4:70277788-70277807 Msa0518440:intron 25.0%
! AACATTAAAACAAGATGAAG+GGG - chr3_4:70277790-70277809 Msa0518440:intron 25.0%
! ATTGTAAAAATAGTGCAACT+AGG - chr3_4:70277827-70277846 Msa0518440:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG - chr3_4:70277947-70277966 Msa0518440:intron 25.0%
!! TTATGTTTGAGATGTGAATT+GGG + chr3_4:70278013-70278032 None:intergenic 25.0%
!! TTTATGTTTGAGATGTGAAT+TGG + chr3_4:70278014-70278033 None:intergenic 25.0%
! AACATAAAAAGACGTTGTTT+AGG - chr3_4:70278026-70278045 Msa0518440:intron 25.0%
! ACCATCAGATCAAAAATAAA+CGG + chr3_4:70278203-70278222 None:intergenic 25.0%
! ATGACATCTAGCATAAAAAA+TGG - chr3_4:70278523-70278542 Msa0518440:intron 25.0%
! ATTGAATTCAATGTTTCGAT+TGG + chr3_4:70278595-70278614 None:intergenic 25.0%
! CTTTCCATTTCTATTTGATA+AGG - chr3_4:70279223-70279242 Msa0518440:five_prime_UTR 25.0%
! GAAACCTTATCAAATAGAAA+TGG + chr3_4:70279230-70279249 None:intergenic 25.0%
! AAAAAACAATAGATGACCAA+AGG - chr3_4:70279263-70279282 Msa0518440:five_prime_UTR 25.0%
!! CAATTTTACTGAACTGTTTT+TGG - chr3_4:70279293-70279312 Msa0518440:five_prime_UTR 25.0%
AATATGTGAGGGACAAATAA+GGG + chr3_4:70275367-70275386 None:intergenic 30.0%
AAATATGTGAGGGACAAATA+AGG + chr3_4:70275368-70275387 None:intergenic 30.0%
AGAAAGAGAGAAATATGTGA+GGG + chr3_4:70275378-70275397 None:intergenic 30.0%
AAGAAAGAGAGAAATATGTG+AGG + chr3_4:70275379-70275398 None:intergenic 30.0%
!!! AGTTTTTTCTGTTGAGGTTT+TGG + chr3_4:70275445-70275464 None:intergenic 30.0%
! TTCGATTTGTAAATTCGATG+AGG + chr3_4:70275509-70275528 None:intergenic 30.0%
TTTACAAATCGAAATCGATG+GGG - chr3_4:70275516-70275535 Msa0518440:three_prime_UTR 30.0%
TATATTCGTGAAGAAACCTA+AGG - chr3_4:70275541-70275560 Msa0518440:three_prime_UTR 30.0%
!! GAAATTGAGGGTATTGAAAA+AGG + chr3_4:70275642-70275661 None:intergenic 30.0%
! CACTACTTCTCATTTTCATA+TGG - chr3_4:70275815-70275834 Msa0518440:CDS 30.0%
AACAACAGTAATCAATACAG+TGG + chr3_4:70275861-70275880 None:intergenic 30.0%
! TAACTCAGTGTTGTTAATCT+CGG + chr3_4:70276128-70276147 None:intergenic 30.0%
TGTATGGAAAATGAATTAGC+TGG - chr3_4:70276176-70276195 Msa0518440:intron 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG - chr3_4:70276214-70276233 Msa0518440:intron 30.0%
GAAAGGAAAAAACTCAAGTA+AGG + chr3_4:70276304-70276323 None:intergenic 30.0%
TGGAAAATAAGAACACAGAA+AGG + chr3_4:70276321-70276340 None:intergenic 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG - chr3_4:70276388-70276407 Msa0518440:intron 30.0%
TCGTGAAAAGAAGAAAGATA+GGG - chr3_4:70276389-70276408 Msa0518440:intron 30.0%
AGAGAGTGAGTCATTATTAT+TGG + chr3_4:70276571-70276590 None:intergenic 30.0%
TACCTGTTAGTATCTTTCTA+TGG - chr3_4:70276590-70276609 Msa0518440:intron 30.0%
TGAAGATGTTCAGAAACTTA+TGG - chr3_4:70276946-70276965 Msa0518440:intron 30.0%
AAGTTCAATGAATCTAGATG+TGG + chr3_4:70277057-70277076 None:intergenic 30.0%
! GATTGAGATTTTTGTTCTGT+TGG - chr3_4:70277127-70277146 Msa0518440:intron 30.0%
TGTTGGGCTGTTAATATATT+TGG - chr3_4:70277144-70277163 Msa0518440:intron 30.0%
GGAAATTAATGCAATACTTG+GGG - chr3_4:70277234-70277253 Msa0518440:intron 30.0%
!! CTGGCTTTAATCATAGTATA+TGG - chr3_4:70277392-70277411 Msa0518440:intron 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG + chr3_4:70277628-70277647 None:intergenic 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG + chr3_4:70277629-70277648 None:intergenic 30.0%
AAAGATCTGGTCATTAACAT+TGG + chr3_4:70277695-70277714 None:intergenic 30.0%
! TATGTTTGAGATGTGAATTG+GGG + chr3_4:70278012-70278031 None:intergenic 30.0%
! TAATGGAGGTTCTTTATTTG+TGG - chr3_4:70278444-70278463 Msa0518440:intron 30.0%
! AATGGAGGTTCTTTATTTGT+GGG - chr3_4:70278445-70278464 Msa0518440:intron 30.0%
CATGCAATAAGAATTTATGG+GGG + chr3_4:70278733-70278752 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG + chr3_4:70278734-70278753 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG + chr3_4:70278735-70278754 None:intergenic 30.0%
TGCCATGCAATAAGAATTTA+TGG + chr3_4:70278736-70278755 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG + chr3_4:70278956-70278975 None:intergenic 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG + chr3_4:70278957-70278976 None:intergenic 30.0%
TATAGAAGTTGACTAACTGA+TGG - chr3_4:70278985-70279004 Msa0518440:intron 30.0%
GTAAAATTGTTTCACTCCTT+TGG + chr3_4:70279282-70279301 None:intergenic 30.0%
ATGCACACACTATTTATTTG+AGG - chr3_4:70279373-70279392 Msa0518440:five_prime_UTR 30.0%
ACTTGCTCAGTATCAACAAA+AGG - chr3_4:70275613-70275632 Msa0518440:intron 35.0%
CTAAATTTCCTCTATGCTAC+AGG + chr3_4:70275980-70275999 None:intergenic 35.0%
GGCATATCGTAGAACAATAT+AGG + chr3_4:70276007-70276026 None:intergenic 35.0%
ACACCAGATACAATCAAAGA+CGG + chr3_4:70276159-70276178 None:intergenic 35.0%
CTTTGATTGTATCTGGTGTA+TGG - chr3_4:70276160-70276179 Msa0518440:intron 35.0%
AAAATGAATTAGCTGGACGT+TGG - chr3_4:70276183-70276202 Msa0518440:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG - chr3_4:70276203-70276222 Msa0518440:intron 35.0%
TTTCTTCTTTAACGCCAACA+AGG + chr3_4:70276415-70276434 None:intergenic 35.0%
TTGCTCAACATTTATAAGCC+AGG + chr3_4:70276472-70276491 None:intergenic 35.0%
AGCCATAGAAAGATACTAAC+AGG + chr3_4:70276595-70276614 None:intergenic 35.0%
TGCTAACAGGTAGAGATTAT+CGG + chr3_4:70276662-70276681 None:intergenic 35.0%
TACCTGTTAGCATCTTTCTA+TGG - chr3_4:70276670-70276689 Msa0518440:intron 35.0%
ATCTCTTCTGAACAGGATAT+CGG + chr3_4:70276742-70276761 None:intergenic 35.0%
CTCAATTATCTCTTCTGAAC+AGG + chr3_4:70276749-70276768 None:intergenic 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG - chr3_4:70276880-70276899 Msa0518440:intron 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG - chr3_4:70276884-70276903 Msa0518440:intron 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG + chr3_4:70276978-70276997 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG - chr3_4:70277070-70277089 Msa0518440:intron 35.0%
! GAACTTGAGTGTACCTTTTT+GGG - chr3_4:70277071-70277090 Msa0518440:intron 35.0%
! AACTTGAGTGTACCTTTTTG+GGG - chr3_4:70277072-70277091 Msa0518440:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG - chr3_4:70277186-70277205 Msa0518440:intron 35.0%
ATTATCAGCAGAAGATGAAG+AGG - chr3_4:70277261-70277280 Msa0518440:intron 35.0%
! AGAAGATGAAGAGGAGATTT+TGG - chr3_4:70277270-70277289 Msa0518440:intron 35.0%
ACTGAAAAATCCATGTACCT+GGG + chr3_4:70277317-70277336 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG + chr3_4:70277318-70277337 None:intergenic 35.0%
ACAGCTGGAACAAATATGAA+TGG + chr3_4:70277368-70277387 None:intergenic 35.0%
AAAGCTGCAGAAAATCTGAA+TGG - chr3_4:70278117-70278136 Msa0518440:intron 35.0%
AAGCTGCAGAAAATCTGAAT+GGG - chr3_4:70278118-70278137 Msa0518440:intron 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG - chr3_4:70278199-70278218 Msa0518440:CDS 35.0%
TATCAGCCGAGACTAATTAA+TGG - chr3_4:70278427-70278446 Msa0518440:intron 35.0%
! GAACCTCCATTAATTAGTCT+CGG + chr3_4:70278436-70278455 None:intergenic 35.0%
ACTCATACCACAAGTAACTT+GGG + chr3_4:70278503-70278522 None:intergenic 35.0%
TACTCATACCACAAGTAACT+TGG + chr3_4:70278504-70278523 None:intergenic 35.0%
ACATTGCTTAGAGAAGAGAT+GGG + chr3_4:70278625-70278644 None:intergenic 35.0%
AACATTGCTTAGAGAAGAGA+TGG + chr3_4:70278626-70278645 None:intergenic 35.0%
CAATAAGAATTTATGGGGGA+AGG + chr3_4:70278729-70278748 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG - chr3_4:70278731-70278750 Msa0518440:intron 35.0%
GAGGTATAATGACTTGAGAA+TGG - chr3_4:70279345-70279364 Msa0518440:five_prime_UTR 35.0%
CGAAGAAACCAAAAAGCAGT+GGG - chr3_4:70275284-70275303 Msa0518440:three_prime_UTR 40.0%
GAAGAAACCAAAAAGCAGTG+GGG - chr3_4:70275285-70275304 Msa0518440:three_prime_UTR 40.0%
CGTGAAGAAACCTAAGGTAA+CGG - chr3_4:70275547-70275566 Msa0518440:three_prime_UTR 40.0%
TTTGACGTGCACAATGAGAA+TGG + chr3_4:70275677-70275696 None:intergenic 40.0%
TCTATGCTACAGTGCTATAG+AGG + chr3_4:70276073-70276092 None:intergenic 40.0%
TCTATAGCACTGTAGCATAG+AGG - chr3_4:70276072-70276091 Msa0518440:intron 40.0%
AGACCGTCTTTGATTGTATC+TGG - chr3_4:70276153-70276172 Msa0518440:intron 40.0%
CTTCAATAACAGCATCAAGC+TGG + chr3_4:70276341-70276360 None:intergenic 40.0%
! TATTGAAGCAAGTTGACACC+TGG - chr3_4:70276451-70276470 Msa0518440:intron 40.0%
CAGGTAGAGATTATCGGAAA+GGG + chr3_4:70276656-70276675 None:intergenic 40.0%
ACAGGTAGAGATTATCGGAA+AGG + chr3_4:70276657-70276676 None:intergenic 40.0%
AGCCATAGAAAGATGCTAAC+AGG + chr3_4:70276675-70276694 None:intergenic 40.0%
ACTCAATGGCTCAATAGACA+AGG + chr3_4:70276708-70276727 None:intergenic 40.0%
CGGAAAGGGAAAATACTCAA+TGG + chr3_4:70276722-70276741 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG + chr3_4:70276736-70276755 None:intergenic 40.0%
TTCTGAACAGGATATCGGAA+AGG + chr3_4:70276737-70276756 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG + chr3_4:70277026-70277045 None:intergenic 40.0%
! ACTTGAGTGTACCTTTTTGG+GGG - chr3_4:70277073-70277092 Msa0518440:intron 40.0%
!! GTTAGGCATTGAAGTTGTAC+TGG - chr3_4:70277101-70277120 Msa0518440:intron 40.0%
TTTGGCAGAGTTTGAGAACT+TGG - chr3_4:70277288-70277307 Msa0518440:intron 40.0%
ATTTGTTCCAGCTGTACTAC+TGG - chr3_4:70277373-70277392 Msa0518440:CDS 40.0%
ATTAAAGCCAGTAGTACAGC+TGG + chr3_4:70277383-70277402 None:intergenic 40.0%
GATCTGGTCATTAACATTGG+TGG + chr3_4:70277692-70277711 None:intergenic 40.0%
GCAGAAAATCTGAATGGGTA+TGG - chr3_4:70278123-70278142 Msa0518440:intron 40.0%
GAAAATCTGAATGGGTATGG+TGG - chr3_4:70278126-70278145 Msa0518440:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG - chr3_4:70278141-70278160 Msa0518440:intron 40.0%
ATAGACTAAGTGAGGCACAT+GGG - chr3_4:70278149-70278168 Msa0518440:CDS 40.0%
TACCACAAGTAACTTGGGTT+CGG + chr3_4:70278498-70278517 None:intergenic 40.0%
GAGCTAGTGATTGACTATAG+AGG - chr3_4:70278648-70278667 Msa0518440:intron 40.0%
! AACTTTTCGTCAACCTTGTC+AGG + chr3_4:70278827-70278846 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG - chr3_4:70278826-70278845 Msa0518440:intron 40.0%
TGATGTTGCAACAGTTATGG+AGG - chr3_4:70279009-70279028 Msa0518440:CDS 40.0%
AACAGTTATGGAGGAACCAT+TGG - chr3_4:70279018-70279037 Msa0518440:CDS 40.0%
AATGTTCTTCAAGCTGCCAA+TGG + chr3_4:70279037-70279056 None:intergenic 40.0%
TGAGGCAACAGAATTGATAG+TGG + chr3_4:70279127-70279146 None:intergenic 40.0%
AAAACTCCAGTAACTGCATG+AGG + chr3_4:70279145-70279164 None:intergenic 40.0%
!!! GCAGTTACTGGAGTTTTGAA+TGG - chr3_4:70279148-70279167 Msa0518440:five_prime_UTR 40.0%
AGTGACAGGAAACAACTCTC+TGG - chr3_4:70275252-70275271 Msa0518440:three_prime_UTR 45.0%
!!! CTGCTTTTTGGTTTCTTCGC+TGG + chr3_4:70275283-70275302 None:intergenic 45.0%
GCGAAGAAACCAAAAAGCAG+TGG - chr3_4:70275283-70275302 Msa0518440:three_prime_UTR 45.0%
!! CTATGAACCCCACTGCTTTT+TGG + chr3_4:70275295-70275314 None:intergenic 45.0%
CAAAAAGCAGTGGGGTTCAT+AGG - chr3_4:70275293-70275312 Msa0518440:three_prime_UTR 45.0%
AAACAGACCGAAACTGCTGT+TGG - chr3_4:70275413-70275432 Msa0518440:three_prime_UTR 45.0%
GTCGTTTCCAACAGCAGTTT+CGG + chr3_4:70275423-70275442 None:intergenic 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG - chr3_4:70276398-70276417 Msa0518440:intron 45.0%
!! CGGAAAGGGAAAGTACTCAA+TGG + chr3_4:70276642-70276661 None:intergenic 45.0%
TGAACTGACAAGCAAGCAGA+AGG - chr3_4:70276859-70276878 Msa0518440:intron 45.0%
GTTTGAGAACTTGGAAACCC+AGG - chr3_4:70277297-70277316 Msa0518440:intron 45.0%
AACTTGGAAACCCAGGTACA+TGG - chr3_4:70277304-70277323 Msa0518440:intron 45.0%
GAATTGGAGGTTGGAGAAGA+AGG + chr3_4:70277646-70277665 None:intergenic 45.0%
TGAAAATGGGGGAGTGGAAT+TGG + chr3_4:70277662-70277681 None:intergenic 45.0%
!! TGGTGGTGGTGGTTGAAAAT+GGG + chr3_4:70277675-70277694 None:intergenic 45.0%
!! TTGGTGGTGGTGGTTGAAAA+TGG + chr3_4:70277676-70277695 None:intergenic 45.0%
!! GTCATTAACATTGGTGGTGG+TGG + chr3_4:70277686-70277705 None:intergenic 45.0%
CTGGTCATTAACATTGGTGG+TGG + chr3_4:70277689-70277708 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG - chr3_4:70278148-70278167 Msa0518440:CDS 45.0%
! GTGTCATTCCTCTAGCAACA+AGG + chr3_4:70278403-70278422 None:intergenic 45.0%
CAGCCGAGACTAATTAATGG+AGG - chr3_4:70278430-70278449 Msa0518440:intron 45.0%
GATCTTCGACTGCAAACTGT+TGG + chr3_4:70278781-70278800 None:intergenic 45.0%
CCTTGGTTGGAACATCAAGA+AGG + chr3_4:70278853-70278872 None:intergenic 45.0%
CCTTCTTGATGTTCCAACCA+AGG - chr3_4:70278850-70278869 Msa0518440:intron 45.0%
TACTTCAGCATCACTCGTAG+TGG + chr3_4:70278885-70278904 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG + chr3_4:70278952-70278971 None:intergenic 45.0%
GGCTGATGTTGCAACAGTTA+TGG - chr3_4:70279006-70279025 Msa0518440:intron 45.0%
GCAAACCAAAGTGTAGCATC+TGG - chr3_4:70279083-70279102 Msa0518440:CDS 45.0%
GAAGACCAGATGCTACACTT+TGG + chr3_4:70279091-70279110 None:intergenic 45.0%
!! ATATATATATATATATATAG+AGG - chr3_4:70277481-70277500 Msa0518440:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr3_4:70277481-70277500 None:intergenic 5.0%
!!! TTTTTTATTTTATTTTCTTT+GGG + chr3_4:70278964-70278983 None:intergenic 5.0%
CGATCTACGTCCGTTACCTT+AGG + chr3_4:70275560-70275579 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG + chr3_4:70275603-70275622 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG + chr3_4:70275604-70275623 None:intergenic 50.0%
!! GAGTGTACCTTTTTGGGGGA+CGG - chr3_4:70277077-70277096 Msa0518440:intron 50.0%
!! AGTGTACCTTTTTGGGGGAC+GGG - chr3_4:70277078-70277097 Msa0518440:intron 50.0%
AAATGGGGGAGTGGAATTGG+AGG + chr3_4:70277659-70277678 None:intergenic 50.0%
!! GTGGTGGTGGTTGAAAATGG+GGG + chr3_4:70277673-70277692 None:intergenic 50.0%
!! GGTGGTGGTGGTTGAAAATG+GGG + chr3_4:70277674-70277693 None:intergenic 50.0%
GAGAGACACCTTGTTGCTAG+AGG - chr3_4:70278392-70278411 Msa0518440:intron 50.0%
CACCGAACCCAAGTTACTTG+TGG - chr3_4:70278493-70278512 Msa0518440:intron 50.0%
AGCTGCATAATGTGACTGCC+TGG - chr3_4:70278558-70278577 Msa0518440:intron 50.0%
CGATTGGCAGCATAACTACC+AGG + chr3_4:70278579-70278598 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG - chr3_4:70278811-70278830 Msa0518440:intron 50.0%
ACCTTGTCAGGAACTGTGCT+AGG + chr3_4:70278815-70278834 None:intergenic 50.0%
GCATCACTCGTAGTGGTAAC+TGG + chr3_4:70278878-70278897 None:intergenic 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG + chr3_4:70278951-70278970 None:intergenic 50.0%
CTGTTGCCTCATGCAGTTAC+TGG - chr3_4:70279136-70279155 Msa0518440:five_prime_UTR 50.0%
GGCTGTAGCCTGTAGCATAG+AGG - chr3_4:70275969-70275988 Msa0518440:intron 55.0%
! GTGCTATAGAGGTGCAGCAG+CGG + chr3_4:70276062-70276081 None:intergenic 55.0%
!! GTGTACCTTTTTGGGGGACG+GGG - chr3_4:70277079-70277098 Msa0518440:intron 55.0%
GGTGGTTGAAAATGGGGGAG+TGG + chr3_4:70277668-70277687 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG + chr3_4:70278806-70278825 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG + chr3_4:70278866-70278885 None:intergenic 55.0%
CGTAGTGGTAACTGGTGCCT+TGG + chr3_4:70278870-70278889 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG + chr3_4:70278950-70278969 None:intergenic 55.0%
! TATAGAGGTGCAGCAGCGGC+TGG + chr3_4:70276058-70276077 None:intergenic 60.0%
CCTAACCCCGTCCCCCAAAA+AGG + chr3_4:70277087-70277106 None:intergenic 60.0%
!! CCTTTTTGGGGGACGGGGTT+AGG - chr3_4:70277084-70277103 Msa0518440:intron 60.0%
GGGGGAGTGGAATTGGAGGT+TGG + chr3_4:70277655-70277674 None:intergenic 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG + chr3_4:70278949-70278968 None:intergenic 60.0%
! GGGGTGGGTTCAGAGGGATG+AGG + chr3_4:70278930-70278949 None:intergenic 65.0%
! GGGACGGGGGTGGGTTCAGA+GGG + chr3_4:70278936-70278955 None:intergenic 70.0%
! AGGGACGGGGGTGGGTTCAG+AGG + chr3_4:70278937-70278956 None:intergenic 70.0%
TGGGAGAGAGGGACGGGGGT+GGG + chr3_4:70278945-70278964 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG + chr3_4:70278946-70278965 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70275244 70279397 70275244 ID=Msa0518440;Name=Msa0518440
chr3_4 mRNA 70275244 70279397 70275244 ID=Msa0518440-mRNA-1;Parent=Msa0518440;Name=Msa0518440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=289|1|1|1|1|1|6|349|217
chr3_4 exon 70275244 70275618 70275244 ID=Msa0518440-mRNA-1:exon:18975;Parent=Msa0518440-mRNA-1
chr3_4 exon 70275721 70275856 70275721 ID=Msa0518440-mRNA-1:exon:18974;Parent=Msa0518440-mRNA-1
chr3_4 exon 70277323 70277406 70277323 ID=Msa0518440-mRNA-1:exon:18973;Parent=Msa0518440-mRNA-1
chr3_4 exon 70277641 70277793 70277641 ID=Msa0518440-mRNA-1:exon:18972;Parent=Msa0518440-mRNA-1
chr3_4 exon 70278147 70278299 70278147 ID=Msa0518440-mRNA-1:exon:18971;Parent=Msa0518440-mRNA-1
chr3_4 exon 70279007 70279397 70279007 ID=Msa0518440-mRNA-1:exon:18970;Parent=Msa0518440-mRNA-1
chr3_4 five_prime_UTR 70279109 70279397 70279109 ID=Msa0518440-mRNA-1:five_prime_utr;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70279007 70279108 70279007 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70278147 70278299 70278147 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70277641 70277793 70277641 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70277323 70277406 70277323 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70275721 70275856 70275721 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 CDS 70275593 70275618 70275593 ID=Msa0518440-mRNA-1:cds;Parent=Msa0518440-mRNA-1
chr3_4 three_prime_UTR 70275244 70275592 70275244 ID=Msa0518440-mRNA-1:three_prime_utr;Parent=Msa0518440-mRNA-1
Gene Sequence

>Msa0518440

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCTTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>Msa0518440

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLLDVPTKAPVTTTSDAEVSIKRKVMEEPLAA*