AlfalfaGEDB | Msa0719000

M. sativa cultivar zhongmu-4 / Msa0719000

KEGG: K01177
GO: GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719000	XP_003612541.1	99.265	136	1	0	104	239	515	650	3.18e-91	292

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719000	sp\|Q9FH80\|BAM8_ARATH	60.902	133	51	1	104	235	552	684	2.95e-49	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719000	G7K5E9	99.265	136	1	0	104	239	515	650	1.52e-91	292

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008410	Msa0719000	0.815290	9.970090e-52	-8.615850e-47
Msa0044020	Msa0719000	0.802662	5.044147e-49	-8.615850e-47
Msa0057140	Msa0719000	0.818362	2.039534e-52	-8.615850e-47
Msa0211860	Msa0719000	0.801096	1.057624e-48	-8.615850e-47
Msa0363620	Msa0719000	0.832903	7.245823e-56	-8.615850e-47
Msa0600600	Msa0719000	0.808795	2.597820e-50	-8.615850e-47
Msa0641140	Msa0719000	0.813770	2.163512e-51	-8.615850e-47
Msa0687630	Msa0719000	0.802190	6.309351e-49	-8.615850e-47
Msa0719000	Msa0749760	0.804688	1.915790e-49	-8.615850e-47
Msa0719000	Msa1081560	0.809611	1.736700e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719000	MtrunA17_Chr5g0408851	99.265	136	1	0	104	239	515	650	2.93e-95	292
Msa0719000	MtrunA17_Chr5g0408401	79.167	120	24	1	1	120	561	679	7.08e-58	196
Msa0719000	MtrunA17_Chr3g0113221	62.687	134	47	2	1	134	787	917	3.80e-47	167
Msa0719000	MtrunA17_Chr5g0408821	59.504	121	47	2	1	120	190	309	5.86e-39	139
Msa0719000	MtrunA17_Chr8g0366461	55.862	145	59	3	1	141	791	934	1.06e-38	142
Msa0719000	MtrunA17_Chr5g0408611	57.895	133	52	3	1	132	784	913	6.58e-38	140
Msa0719000	MtrunA17_Chr6g0472051	59.504	121	47	2	1	120	1	120	6.64e-38	131
Msa0719000	MtrunA17_Chr5g0408571	66.346	104	34	1	1	103	275	378	3.62e-37	136
Msa0719000	MtrunA17_Chr5g0409241	61.667	120	42	2	1	120	477	592	4.10e-37	137
Msa0719000	MtrunA17_Chr5g0419221	57.851	121	49	2	1	120	796	915	6.45e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719000	AT5G45300.2	60.902	133	51	1	104	235	550	682	2.66e-50	174
Msa0719000	AT5G45300.1	60.902	133	51	1	104	235	552	684	3.00e-50	174
Msa0719000	AT5G45300.3	60.902	133	51	1	104	235	566	698	3.57e-50	174
Msa0719000	AT4G00490.1	43.571	140	74	3	104	239	392	530	2.92e-33	126
Msa0719000	AT2G45880.1	41.007	139	77	3	104	238	545	682	9.17e-30	117
Msa0719000	AT3G47570.1	48.551	138	64	4	1	134	784	918	1.05e-28	114
Msa0719000	AT3G47090.1	47.826	138	65	4	1	134	783	917	3.75e-28	112
Msa0719000	AT3G47580.1	48.529	136	63	4	3	134	787	919	5.40e-28	112
Msa0719000	AT3G47110.1	47.581	124	60	3	1	120	801	923	2.44e-26	107
Msa0719000	AT5G39390.1	47.101	138	66	5	1	134	291	425	9.83e-26	105

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Find 64 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGAATGAAAAGTGC+CGG	0.559419	5_1:+13479510	None:intergenic
AAAGTTGTAAAATTATGTCG+AGG	0.624306	5_1:+13479101	None:intergenic
AAATGTTTGCCTGTCAGAAT+TGG	0.351900	5_1:-13479462	Msa0719000:CDS
AAATTATGTCGAGGTTGTTA+TGG	0.369192	5_1:+13479110	None:intergenic
AAGTCTATTGAAGTTGAAGT+TGG	0.454770	5_1:-13478952	Msa0719000:three_prime_UTR
AATCATTGACTCTTGAGGAA+AGG	0.578966	5_1:-13485436	Msa0719000:CDS
AATGAAAAGTGCCGGTGATC+AGG	0.403522	5_1:+13479518	None:intergenic
ACACAAATCATTGACTCTTG+AGG	0.591222	5_1:-13485441	Msa0719000:CDS
ACAGGCATTAAACTCAGCTT+GGG	0.520272	5_1:-13479636	Msa0719000:intron
ACATTTCCCTGAAGCAAAGA+TGG	0.448478	5_1:+13479479	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATGGAAACTTAGAAAGT+TGG	-	chr5_1:13478949-13478968	Msa0719000:three_prime_UTR	30.0%
TCATTAAGAAGAACATTTGC+AGG	+	chr5_1:13479116-13479135	None:intergenic	30.0%
TGTTCTTCTTAATGACTTCA+TGG	-	chr5_1:13479121-13479140	Msa0719000:three_prime_UTR	30.0%
ACTAGCACAATTGGAATAAA+GGG	-	chr5_1:13479209-13479228	Msa0719000:three_prime_UTR	30.0%
ACAATATGGAAAAGGTTATC+TGG	+	chr5_1:13479540-13479559	None:intergenic	30.0%
ACCAAAGGAAAGAATGAATA+TGG	-	chr5_1:13479686-13479705	Msa0719000:intron	30.0%
ACCATATTCATTCTTTCCTT+TGG	+	chr5_1:13479690-13479709	None:intergenic	30.0%
ATGATTATCTGACATCATGT+TGG	-	chr5_1:13479945-13479964	Msa0719000:CDS	30.0%
TGATTATCTGACATCATGTT+GGG	-	chr5_1:13479946-13479965	Msa0719000:CDS	30.0%
TTAACTTCATGTATCACATG+AGG	-	chr5_1:13480202-13480221	Msa0719000:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	13478945	13485519	13478945	ID=Msa0719000;Name=Msa0719000
chr5_1	mRNA	13478945	13485519	13478945	ID=Msa0719000-mRNA-1;Parent=Msa0719000;Name=Msa0719000-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0.66\|0.5\|1\|1\|1\|4\|363\|239
chr5_1	exon	13478945	13479330	13478945	ID=Msa0719000-mRNA-1:exon:5508;Parent=Msa0719000-mRNA-1
chr5_1	exon	13479438	13479654	13479438	ID=Msa0719000-mRNA-1:exon:5507;Parent=Msa0719000-mRNA-1
chr5_1	exon	13479823	13479992	13479823	ID=Msa0719000-mRNA-1:exon:5506;Parent=Msa0719000-mRNA-1
chr5_1	exon	13485210	13485519	13485210	ID=Msa0719000-mRNA-1:exon:5505;Parent=Msa0719000-mRNA-1
chr5_1	CDS	13485210	13485519	13485210	ID=Msa0719000-mRNA-1:cds;Parent=Msa0719000-mRNA-1
chr5_1	CDS	13479823	13479992	13479823	ID=Msa0719000-mRNA-1:cds;Parent=Msa0719000-mRNA-1
chr5_1	CDS	13479438	13479654	13479438	ID=Msa0719000-mRNA-1:cds;Parent=Msa0719000-mRNA-1
chr5_1	CDS	13479308	13479330	13479308	ID=Msa0719000-mRNA-1:cds;Parent=Msa0719000-mRNA-1
chr5_1	three_prime_UTR	13478945	13479307	13478945	ID=Msa0719000-mRNA-1:three_prime_utr;Parent=Msa0719000-mRNA-1

Gene Sequence

>Msa0719000

ATGAGAAATGGAAACTTAGAAAGTTGGTTGCATCCAACACCTGAAATTACAGATCAACACAAATCATTGACTCTTGAGGAAAGGTTAAATATTATTGCTGATGTTGCGTCAGCATTTTGTTATCTTCACTACGAATGCGAGCAGCCTGTCATTCATTGTGATTTAAAGCCTGCAAATGTTCTTCTTAATGACTTCATGGTAGCTCAAGTGAGTGATTTTGGGTTAGCAAAGTTGCTCTCAAGTGTTGGAGTCTCTCTGATGCAGACTAGCACAATTGGAATAAAGGGGACAGTCGGCTATGCACCCCCAGCAGAATTGACTGCAGGATATCACAATCCCACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAAAAAACACGCTGTCACCATGAAATTTGTCTGCTTAGGATTTAATCCTTCCAACCAGGAAGCTAATGAGTCATTGGTTGATCCAGATGGCCTGAGTTGGCAGGCATTAAACTCAGCTTGGGAACGAGGGTTGATCACTTCTGGAGAGAATGCAATCTTTTGCTATGATAGAGAAAGGTACGAGAGATTGATTGAGATGGCAAAGCCCAGAAATGATCCTGATCACCGGCACTTTTCATTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGCCTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGGAATCTTTAA

Protein sequence

>Msa0719000

MRNGNLESWLHPTPEITDQHKSLTLEERLNIIADVASAFCYLHYECEQPVIHCDLKPANVLLNDFMVAQVSDFGLAKLLSSVGVSLMQTSTIGIKGTVGYAPPAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFNPSNQEANESLVDPDGLSWQALNSAWERGLITSGENAIFCYDRERYERLIEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGNL*