AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127890 MtrunA17_Chr7g0271081 98.413 63 1 0 1 63 1 63 3.75e-39 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127890 AT1G73177.1 71.667 60 17 0 1 60 1 60 4.39e-16 65.5

Find 30 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTCCAAATTTCCAAAA+AGG 0.261906 7_3:+79568119 None:intergenic
TGATAGACATTAAGAAATTT+CGG 0.335030 7_3:-79568325 Msa1127890:three_prime_UTR
TTGTCAACAGTGTTTGGTTT+GGG 0.342904 7_3:-79568182 Msa1127890:three_prime_UTR
TGTTTGGTTTGGGAAATAAA+AGG 0.351855 7_3:-79568172 Msa1127890:three_prime_UTR
TCAGTTGGGCGTTTATATAA+TGG 0.358701 7_3:-79569894 None:intergenic
GGAGGCACAACAAGTTAATA+AGG 0.370280 7_3:-79568451 Msa1127890:CDS
TGCCTCCAACACTGGTTGTT+CGG 0.370391 7_3:-79569020 Msa1127890:CDS
TTTGTCAACAGTGTTTGGTT+TGG 0.401354 7_3:-79568183 Msa1127890:three_prime_UTR
TTTATTGAAACTTCTACTCT+TGG 0.408151 7_3:+79568403 None:intergenic
AAAGGCAACCTTATGCATAA+TGG 0.429348 7_3:-79568242 Msa1127890:three_prime_UTR
GCTTGGCACGATCTTGCCCT+TGG 0.435718 7_3:-79568426 Msa1127890:CDS
AAAATGGCAGAACTGAGTTT+GGG 0.446438 7_3:-79569618 Msa1127890:CDS
TTGACATTGTTGATGAGGAT+TGG 0.447381 7_3:-79569587 Msa1127890:CDS
ACAACCAGTGTTGGAGGCAG+TGG 0.463826 7_3:+79569024 None:intergenic
GTAATCTACCATTATGCATA+AGG 0.482948 7_3:+79568234 None:intergenic
TGTCTATCACATACATAGAA+AGG 0.488465 7_3:+79568339 None:intergenic
TCTTCCACTGCCTCCAACAC+TGG 0.491395 7_3:-79569028 Msa1127890:CDS
GAAACTTCTACTCTTGGCCA+AGG 0.510239 7_3:+79568409 None:intergenic
TCTAATTGACATTGTTGATG+AGG 0.512652 7_3:-79569592 Msa1127890:CDS
AACAAGTTAATAAGGATGCT+TGG 0.520232 7_3:-79568443 Msa1127890:CDS
GTCCGAACAACCAGTGTTGG+AGG 0.546833 7_3:+79569018 None:intergenic
TGTCATGCTTAGTAGTAAGT+AGG 0.548709 7_3:-79568368 Msa1127890:three_prime_UTR
AGAGACATTCTTCCTCAAGA+TGG 0.570997 7_3:-79569561 Msa1127890:intron
TCTGTCCGAACAACCAGTGT+TGG 0.577627 7_3:+79569015 None:intergenic
TATCACATACATAGAAAGGA+AGG 0.591643 7_3:+79568343 None:intergenic
TGGTTTGGGAAATAAAAGGA+TGG 0.592378 7_3:-79568168 Msa1127890:three_prime_UTR
TTGTTGTTAATCAGATCAGG+AGG 0.619606 7_3:-79568469 Msa1127890:intron
AAACTTCTACTCTTGGCCAA+GGG 0.628656 7_3:+79568410 None:intergenic
ATTGTTCTCAATCTGAGTGA+AGG 0.633691 7_3:-79569838 Msa1127890:five_prime_UTR
TGTTCGGACAGATGATACTG+AGG 0.734610 7_3:-79569004 Msa1127890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCAATATACAATAT+AGG + chr7_3:79568765-79568784 None:intergenic 10.0%
!! AATTTATCAATATACAATAT+AGG + chr7_3:79568765-79568784 None:intergenic 10.0%
!! AAAAAAAAAATACCATCTTG+AGG + chr7_3:79568467-79568486 None:intergenic 20.0%
!! TAAAAAACAGTTGCAAAAAA+AGG - chr7_3:79568589-79568608 Msa1127890:intron 20.0%
!!! ACTTCTTATTTCATTTACAA+TGG + chr7_3:79568661-79568680 None:intergenic 20.0%
!! CAAATATAACAAAGTATAGA+TGG - chr7_3:79568830-79568849 Msa1127890:intron 20.0%
!! TTTAAAAGAAAATGTGTTCT+TGG - chr7_3:79569237-79569256 Msa1127890:intron 20.0%
!!! ATGTTTTCAAACTTATATGT+CGG - chr7_3:79569417-79569436 Msa1127890:intron 20.0%
!! TGATAGACATTAAGAAATTT+CGG - chr7_3:79569688-79569707 Msa1127890:intron 20.0%
!! AAAAAAAAAATACCATCTTG+AGG + chr7_3:79568467-79568486 None:intergenic 20.0%
!! TAAAAAACAGTTGCAAAAAA+AGG - chr7_3:79568589-79568608 Msa1127890:intron 20.0%
!!! ACTTCTTATTTCATTTACAA+TGG + chr7_3:79568661-79568680 None:intergenic 20.0%
!! CAAATATAACAAAGTATAGA+TGG - chr7_3:79568830-79568849 Msa1127890:intron 20.0%
!! TTTAAAAGAAAATGTGTTCT+TGG - chr7_3:79569237-79569256 Msa1127890:intron 20.0%
!!! ATGTTTTCAAACTTATATGT+CGG - chr7_3:79569417-79569436 Msa1127890:intron 20.0%
!! TGATAGACATTAAGAAATTT+CGG - chr7_3:79569688-79569707 Msa1127890:intron 20.0%
! AATGAAGAGAAAGATGAATT+TGG + chr7_3:79568276-79568295 None:intergenic 25.0%
!! AACGACAAGAATTAGATTTT+GGG + chr7_3:79568345-79568364 None:intergenic 25.0%
!! AAACGACAAGAATTAGATTT+TGG + chr7_3:79568346-79568365 None:intergenic 25.0%
!!! ATTTTGTGTTATTAACAGTG+TGG - chr7_3:79568367-79568386 Msa1127890:three_prime_UTR 25.0%
! GTAAAATTAGTATACACTGA+CGG + chr7_3:79568529-79568548 None:intergenic 25.0%
! TCAATATACAATATAGGACA+GGG + chr7_3:79568759-79568778 None:intergenic 25.0%
! ATCAATATACAATATAGGAC+AGG + chr7_3:79568760-79568779 None:intergenic 25.0%
! TATAACAAAGTATAGATGGT+TGG - chr7_3:79568834-79568853 Msa1127890:intron 25.0%
!! CTTTAAAAGTTGCAATTTAG+TGG - chr7_3:79569189-79569208 Msa1127890:intron 25.0%
!! TGTTTTCAAACTTATATGTC+GGG - chr7_3:79569418-79569437 Msa1127890:intron 25.0%
! ATTGATTATTGTTCATGAGA+TGG - chr7_3:79569463-79569482 Msa1127890:intron 25.0%
! TTGATTATTGTTCATGAGAT+GGG - chr7_3:79569464-79569483 Msa1127890:intron 25.0%
! TTTATTGAAACTTCTACTCT+TGG + chr7_3:79569613-79569632 None:intergenic 25.0%
!!! ATTTTTGCTTTGAACTCTAA+AGG - chr7_3:79569753-79569772 Msa1127890:intron 25.0%
!! TAAATTTTGTCAACAGTGTT+TGG - chr7_3:79569825-79569844 Msa1127890:five_prime_UTR 25.0%
!! AATAAAATCTCTTGCCTTTT+TGG - chr7_3:79569880-79569899 Msa1127890:five_prime_UTR 25.0%
! AATGAAGAGAAAGATGAATT+TGG + chr7_3:79568276-79568295 None:intergenic 25.0%
!! AACGACAAGAATTAGATTTT+GGG + chr7_3:79568345-79568364 None:intergenic 25.0%
!! AAACGACAAGAATTAGATTT+TGG + chr7_3:79568346-79568365 None:intergenic 25.0%
!!! ATTTTGTGTTATTAACAGTG+TGG - chr7_3:79568367-79568386 Msa1127890:three_prime_UTR 25.0%
! GTAAAATTAGTATACACTGA+CGG + chr7_3:79568529-79568548 None:intergenic 25.0%
! TCAATATACAATATAGGACA+GGG + chr7_3:79568759-79568778 None:intergenic 25.0%
! ATCAATATACAATATAGGAC+AGG + chr7_3:79568760-79568779 None:intergenic 25.0%
! TATAACAAAGTATAGATGGT+TGG - chr7_3:79568834-79568853 Msa1127890:intron 25.0%
!! CTTTAAAAGTTGCAATTTAG+TGG - chr7_3:79569189-79569208 Msa1127890:intron 25.0%
!! TGTTTTCAAACTTATATGTC+GGG - chr7_3:79569418-79569437 Msa1127890:intron 25.0%
! ATTGATTATTGTTCATGAGA+TGG - chr7_3:79569463-79569482 Msa1127890:intron 25.0%
! TTGATTATTGTTCATGAGAT+GGG - chr7_3:79569464-79569483 Msa1127890:intron 25.0%
! TTTATTGAAACTTCTACTCT+TGG + chr7_3:79569613-79569632 None:intergenic 25.0%
!!! ATTTTTGCTTTGAACTCTAA+AGG - chr7_3:79569753-79569772 Msa1127890:intron 25.0%
!! TAAATTTTGTCAACAGTGTT+TGG - chr7_3:79569825-79569844 Msa1127890:five_prime_UTR 25.0%
!! AATAAAATCTCTTGCCTTTT+TGG - chr7_3:79569880-79569899 Msa1127890:five_prime_UTR 25.0%
! GGTTAGGGATAATTTGAAAT+TGG + chr7_3:79568316-79568335 None:intergenic 30.0%
! ACGACAAGAATTAGATTTTG+GGG + chr7_3:79568344-79568363 None:intergenic 30.0%
TAACAGTGTGGAGAAAAAAA+TGG - chr7_3:79568379-79568398 Msa1127890:three_prime_UTR 30.0%
TCTAATTGACATTGTTGATG+AGG - chr7_3:79568421-79568440 Msa1127890:CDS 30.0%
AATCTATTTGTAGTTGACGT+TGG + chr7_3:79568553-79568572 None:intergenic 30.0%
AAAAAGGCTACATAGCAAAA+TGG - chr7_3:79568605-79568624 Msa1127890:intron 30.0%
TACGAAGAGAATGTAAGTTT+AGG - chr7_3:79568875-79568894 Msa1127890:intron 30.0%
ACGAAGAGAATGTAAGTTTA+GGG - chr7_3:79568876-79568895 Msa1127890:intron 30.0%
! TTGATAATTGATATCCACGT+GGG - chr7_3:79568930-79568949 Msa1127890:intron 30.0%
TAAACTAAGCTCAAGAAAGA+TGG + chr7_3:79569085-79569104 None:intergenic 30.0%
GAATTGCTTCAATGAAAACA+TGG - chr7_3:79569211-79569230 Msa1127890:intron 30.0%
AACTATATATGTTGCCATGT+TGG - chr7_3:79569362-79569381 Msa1127890:intron 30.0%
! GTTTTCAAACTTATATGTCG+GGG - chr7_3:79569419-79569438 Msa1127890:intron 30.0%
GGCTACATAACTTATAATAG+TGG - chr7_3:79569440-79569459 Msa1127890:intron 30.0%
CTGATTAACAACAAATCACA+TGG + chr7_3:79569538-79569557 None:intergenic 30.0%
!! GATTTGTTGTTAATCAGATC+AGG - chr7_3:79569541-79569560 Msa1127890:intron 30.0%
AACAAGTTAATAAGGATGCT+TGG - chr7_3:79569570-79569589 Msa1127890:CDS 30.0%
TATCACATACATAGAAAGGA+AGG + chr7_3:79569673-79569692 None:intergenic 30.0%
TGTCTATCACATACATAGAA+AGG + chr7_3:79569677-79569696 None:intergenic 30.0%
GTAATCTACCATTATGCATA+AGG + chr7_3:79569782-79569801 None:intergenic 30.0%
!! TGTTTGGTTTGGGAAATAAA+AGG - chr7_3:79569841-79569860 Msa1127890:five_prime_UTR 30.0%
!! TCTTGCCTTTTTGGAAATTT+GGG - chr7_3:79569889-79569908 Msa1127890:five_prime_UTR 30.0%
! GGTTAGGGATAATTTGAAAT+TGG + chr7_3:79568316-79568335 None:intergenic 30.0%
! ACGACAAGAATTAGATTTTG+GGG + chr7_3:79568344-79568363 None:intergenic 30.0%
TAACAGTGTGGAGAAAAAAA+TGG - chr7_3:79568379-79568398 Msa1127890:three_prime_UTR 30.0%
TCTAATTGACATTGTTGATG+AGG - chr7_3:79568421-79568440 Msa1127890:CDS 30.0%
AATCTATTTGTAGTTGACGT+TGG + chr7_3:79568553-79568572 None:intergenic 30.0%
AAAAAGGCTACATAGCAAAA+TGG - chr7_3:79568605-79568624 Msa1127890:intron 30.0%
TACGAAGAGAATGTAAGTTT+AGG - chr7_3:79568875-79568894 Msa1127890:intron 30.0%
ACGAAGAGAATGTAAGTTTA+GGG - chr7_3:79568876-79568895 Msa1127890:intron 30.0%
! TTGATAATTGATATCCACGT+GGG - chr7_3:79568930-79568949 Msa1127890:intron 30.0%
TAAACTAAGCTCAAGAAAGA+TGG + chr7_3:79569085-79569104 None:intergenic 30.0%
GAATTGCTTCAATGAAAACA+TGG - chr7_3:79569211-79569230 Msa1127890:intron 30.0%
AACTATATATGTTGCCATGT+TGG - chr7_3:79569362-79569381 Msa1127890:intron 30.0%
! GTTTTCAAACTTATATGTCG+GGG - chr7_3:79569419-79569438 Msa1127890:intron 30.0%
GGCTACATAACTTATAATAG+TGG - chr7_3:79569440-79569459 Msa1127890:intron 30.0%
CTGATTAACAACAAATCACA+TGG + chr7_3:79569538-79569557 None:intergenic 30.0%
!! GATTTGTTGTTAATCAGATC+AGG - chr7_3:79569541-79569560 Msa1127890:intron 30.0%
AACAAGTTAATAAGGATGCT+TGG - chr7_3:79569570-79569589 Msa1127890:CDS 30.0%
TATCACATACATAGAAAGGA+AGG + chr7_3:79569673-79569692 None:intergenic 30.0%
TGTCTATCACATACATAGAA+AGG + chr7_3:79569677-79569696 None:intergenic 30.0%
GTAATCTACCATTATGCATA+AGG + chr7_3:79569782-79569801 None:intergenic 30.0%
!! TGTTTGGTTTGGGAAATAAA+AGG - chr7_3:79569841-79569860 Msa1127890:five_prime_UTR 30.0%
ATTGTTCTCAATCTGAGTGA+AGG - chr7_3:79568175-79568194 Msa1127890:three_prime_UTR 35.0%
GAATTTGGAGAAGAGAGATA+AGG + chr7_3:79568261-79568280 None:intergenic 35.0%
!! GAATTAGATTTTGGGGGTTA+GGG + chr7_3:79568337-79568356 None:intergenic 35.0%
!! AGAATTAGATTTTGGGGGTT+AGG + chr7_3:79568338-79568357 None:intergenic 35.0%
! CGACAAGAATTAGATTTTGG+GGG + chr7_3:79568343-79568362 None:intergenic 35.0%
AAAAATGGCAGAACTGAGTT+TGG - chr7_3:79568394-79568413 Msa1127890:three_prime_UTR 35.0%
AAAATGGCAGAACTGAGTTT+GGG - chr7_3:79568395-79568414 Msa1127890:three_prime_UTR 35.0%
! TTGACATTGTTGATGAGGAT+TGG - chr7_3:79568426-79568445 Msa1127890:CDS 35.0%
ATACAATATAGGACAGGGAT+GGG + chr7_3:79568754-79568773 None:intergenic 35.0%
TATACAATATAGGACAGGGA+TGG + chr7_3:79568755-79568774 None:intergenic 35.0%
GATAAATTGTCCTGAACTGA+CGG - chr7_3:79568777-79568796 Msa1127890:intron 35.0%
AGAGAATGTAAGTTTAGGGA+TGG - chr7_3:79568880-79568899 Msa1127890:intron 35.0%
AGTTTAGGGATGGATGAAAT+TGG - chr7_3:79568890-79568909 Msa1127890:intron 35.0%
! CTTGATAATTGATATCCACG+TGG - chr7_3:79568929-79568948 Msa1127890:intron 35.0%
GACTAAAGCAGTTACATTTG+TGG - chr7_3:79569056-79569075 Msa1127890:intron 35.0%
! GTATTAAGCACACGTTGATT+TGG - chr7_3:79569118-79569137 Msa1127890:intron 35.0%
! TTGTTGTTAATCAGATCAGG+AGG - chr7_3:79569544-79569563 Msa1127890:intron 35.0%
TGTCATGCTTAGTAGTAAGT+AGG - chr7_3:79569645-79569664 Msa1127890:intron 35.0%
AAAGGCAACCTTATGCATAA+TGG - chr7_3:79569771-79569790 Msa1127890:intron 35.0%
TTTGTCAACAGTGTTTGGTT+TGG - chr7_3:79569830-79569849 Msa1127890:five_prime_UTR 35.0%
! TTGTCAACAGTGTTTGGTTT+GGG - chr7_3:79569831-79569850 Msa1127890:five_prime_UTR 35.0%
! TGGTTTGGGAAATAAAAGGA+TGG - chr7_3:79569845-79569864 Msa1127890:five_prime_UTR 35.0%
!! CTCTTGCCTTTTTGGAAATT+TGG - chr7_3:79569888-79569907 Msa1127890:five_prime_UTR 35.0%
ATTGTTCTCAATCTGAGTGA+AGG - chr7_3:79568175-79568194 Msa1127890:three_prime_UTR 35.0%
GAATTTGGAGAAGAGAGATA+AGG + chr7_3:79568261-79568280 None:intergenic 35.0%
!! GAATTAGATTTTGGGGGTTA+GGG + chr7_3:79568337-79568356 None:intergenic 35.0%
!! AGAATTAGATTTTGGGGGTT+AGG + chr7_3:79568338-79568357 None:intergenic 35.0%
! CGACAAGAATTAGATTTTGG+GGG + chr7_3:79568343-79568362 None:intergenic 35.0%
AAAAATGGCAGAACTGAGTT+TGG - chr7_3:79568394-79568413 Msa1127890:three_prime_UTR 35.0%
AAAATGGCAGAACTGAGTTT+GGG - chr7_3:79568395-79568414 Msa1127890:three_prime_UTR 35.0%
! TTGACATTGTTGATGAGGAT+TGG - chr7_3:79568426-79568445 Msa1127890:CDS 35.0%
ATACAATATAGGACAGGGAT+GGG + chr7_3:79568754-79568773 None:intergenic 35.0%
TATACAATATAGGACAGGGA+TGG + chr7_3:79568755-79568774 None:intergenic 35.0%
GATAAATTGTCCTGAACTGA+CGG - chr7_3:79568777-79568796 Msa1127890:intron 35.0%
AGAGAATGTAAGTTTAGGGA+TGG - chr7_3:79568880-79568899 Msa1127890:intron 35.0%
AGTTTAGGGATGGATGAAAT+TGG - chr7_3:79568890-79568909 Msa1127890:intron 35.0%
! CTTGATAATTGATATCCACG+TGG - chr7_3:79568929-79568948 Msa1127890:intron 35.0%
GACTAAAGCAGTTACATTTG+TGG - chr7_3:79569056-79569075 Msa1127890:intron 35.0%
! GTATTAAGCACACGTTGATT+TGG - chr7_3:79569118-79569137 Msa1127890:intron 35.0%
! TTGTTGTTAATCAGATCAGG+AGG - chr7_3:79569544-79569563 Msa1127890:intron 35.0%
TGTCATGCTTAGTAGTAAGT+AGG - chr7_3:79569645-79569664 Msa1127890:intron 35.0%
AAAGGCAACCTTATGCATAA+TGG - chr7_3:79569771-79569790 Msa1127890:intron 35.0%
TTTGTCAACAGTGTTTGGTT+TGG - chr7_3:79569830-79569849 Msa1127890:five_prime_UTR 35.0%
! TTGTCAACAGTGTTTGGTTT+GGG - chr7_3:79569831-79569850 Msa1127890:five_prime_UTR 35.0%
! TGGTTTGGGAAATAAAAGGA+TGG - chr7_3:79569845-79569864 Msa1127890:five_prime_UTR 35.0%
AGAGACATTCTTCCTCAAGA+TGG - chr7_3:79568452-79568471 Msa1127890:CDS 40.0%
TATGCACGCTGTTGTCTAAT+TGG + chr7_3:79568637-79568656 None:intergenic 40.0%
CAAATATGTACCGTCAGTTC+AGG + chr7_3:79568790-79568809 None:intergenic 40.0%
ATCAGATTTACATTCCCACG+TGG + chr7_3:79568947-79568966 None:intergenic 40.0%
!! CACACGTTGATTTGGTTGAT+GGG - chr7_3:79569126-79569145 Msa1127890:intron 40.0%
ACAATGCATTACTGACAGTG+TGG - chr7_3:79569292-79569311 Msa1127890:intron 40.0%
ACAGTGTGGCATGTAAACAA+CGG - chr7_3:79569306-79569325 Msa1127890:intron 40.0%
ATATGTTGCCATGTTGGTGT+CGG - chr7_3:79569368-79569387 Msa1127890:intron 40.0%
! TCATGAGATGGGTCTTATGT+TGG - chr7_3:79569475-79569494 Msa1127890:intron 40.0%
! GGAGGCACAACAAGTTAATA+AGG - chr7_3:79569562-79569581 Msa1127890:CDS 40.0%
AAACTTCTACTCTTGGCCAA+GGG + chr7_3:79569606-79569625 None:intergenic 40.0%
AGAGACATTCTTCCTCAAGA+TGG - chr7_3:79568452-79568471 Msa1127890:CDS 40.0%
TATGCACGCTGTTGTCTAAT+TGG + chr7_3:79568637-79568656 None:intergenic 40.0%
CAAATATGTACCGTCAGTTC+AGG + chr7_3:79568790-79568809 None:intergenic 40.0%
ATCAGATTTACATTCCCACG+TGG + chr7_3:79568947-79568966 None:intergenic 40.0%
!! CACACGTTGATTTGGTTGAT+GGG - chr7_3:79569126-79569145 Msa1127890:intron 40.0%
ACAATGCATTACTGACAGTG+TGG - chr7_3:79569292-79569311 Msa1127890:intron 40.0%
ACAGTGTGGCATGTAAACAA+CGG - chr7_3:79569306-79569325 Msa1127890:intron 40.0%
ATATGTTGCCATGTTGGTGT+CGG - chr7_3:79569368-79569387 Msa1127890:intron 40.0%
! TCATGAGATGGGTCTTATGT+TGG - chr7_3:79569475-79569494 Msa1127890:intron 40.0%
! GGAGGCACAACAAGTTAATA+AGG - chr7_3:79569562-79569581 Msa1127890:CDS 40.0%
AAACTTCTACTCTTGGCCAA+GGG + chr7_3:79569606-79569625 None:intergenic 40.0%
!! CTGAGTGAAGGCAGTTTTAG+TGG - chr7_3:79568187-79568206 Msa1127890:three_prime_UTR 45.0%
!! GATTTTGGGGGTTAGGGTTA+GGG + chr7_3:79568331-79568350 None:intergenic 45.0%
!! AGATTTTGGGGGTTAGGGTT+AGG + chr7_3:79568332-79568351 None:intergenic 45.0%
TGTTCGGACAGATGATACTG+AGG - chr7_3:79569009-79569028 Msa1127890:CDS 45.0%
!! GCACACGTTGATTTGGTTGA+TGG - chr7_3:79569125-79569144 Msa1127890:intron 45.0%
TGTCGGATACAGACACATGT+TGG - chr7_3:79569385-79569404 Msa1127890:intron 45.0%
! TGAGATGGGTCTTATGTTGG+AGG - chr7_3:79569478-79569497 Msa1127890:intron 45.0%
GAAACTTCTACTCTTGGCCA+AGG + chr7_3:79569607-79569626 None:intergenic 45.0%
!! CTGAGTGAAGGCAGTTTTAG+TGG - chr7_3:79568187-79568206 Msa1127890:three_prime_UTR 45.0%
!! GATTTTGGGGGTTAGGGTTA+GGG + chr7_3:79568331-79568350 None:intergenic 45.0%
!! AGATTTTGGGGGTTAGGGTT+AGG + chr7_3:79568332-79568351 None:intergenic 45.0%
TGTTCGGACAGATGATACTG+AGG - chr7_3:79569009-79569028 Msa1127890:CDS 45.0%
!! GCACACGTTGATTTGGTTGA+TGG - chr7_3:79569125-79569144 Msa1127890:intron 45.0%
TGTCGGATACAGACACATGT+TGG - chr7_3:79569385-79569404 Msa1127890:intron 45.0%
! TGAGATGGGTCTTATGTTGG+AGG - chr7_3:79569478-79569497 Msa1127890:intron 45.0%
GAAACTTCTACTCTTGGCCA+AGG + chr7_3:79569607-79569626 None:intergenic 45.0%
! TGCCTCCAACACTGGTTGTT+CGG - chr7_3:79568993-79569012 Msa1127890:intron 50.0%
TCTGTCCGAACAACCAGTGT+TGG + chr7_3:79569001-79569020 None:intergenic 50.0%
GTCTGTATCCGACACCAACA+TGG + chr7_3:79569379-79569398 None:intergenic 50.0%
! TGCCTCCAACACTGGTTGTT+CGG - chr7_3:79568993-79569012 Msa1127890:intron 50.0%
TCTGTCCGAACAACCAGTGT+TGG + chr7_3:79569001-79569020 None:intergenic 50.0%
GTCTGTATCCGACACCAACA+TGG + chr7_3:79569379-79569398 None:intergenic 50.0%
TCGCTGAGTCTCAGTCAGTC+AGG - chr7_3:79568233-79568252 Msa1127890:three_prime_UTR 55.0%
TCTTCCACTGCCTCCAACAC+TGG - chr7_3:79568985-79569004 Msa1127890:intron 55.0%
! ACAACCAGTGTTGGAGGCAG+TGG + chr7_3:79568992-79569011 None:intergenic 55.0%
! GTCCGAACAACCAGTGTTGG+AGG + chr7_3:79568998-79569017 None:intergenic 55.0%
TCGCTGAGTCTCAGTCAGTC+AGG - chr7_3:79568233-79568252 Msa1127890:three_prime_UTR 55.0%
TCTTCCACTGCCTCCAACAC+TGG - chr7_3:79568985-79569004 Msa1127890:intron 55.0%
! ACAACCAGTGTTGGAGGCAG+TGG + chr7_3:79568992-79569011 None:intergenic 55.0%
! GTCCGAACAACCAGTGTTGG+AGG + chr7_3:79568998-79569017 None:intergenic 55.0%
GCTTGGCACGATCTTGCCCT+TGG - chr7_3:79569587-79569606 Msa1127890:CDS 60.0%
GCTTGGCACGATCTTGCCCT+TGG - chr7_3:79569587-79569606 Msa1127890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79568126 79569909 79568126 ID=Msa1127890;Name=Msa1127890
chr7_3 mRNA 79568126 79569909 79568126 ID=Msa1127890-mRNA-1;Parent=Msa1127890;Name=Msa1127890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=142|1|1|1|0.66|0.5|4|290|63
chr7_3 exon 79568126 79568477 79568126 ID=Msa1127890-mRNA-1:exon:22537;Parent=Msa1127890-mRNA-1
chr7_3 exon 79568998 79569051 79568998 ID=Msa1127890-mRNA-1:exon:22536;Parent=Msa1127890-mRNA-1
chr7_3 exon 79569562 79569650 79569562 ID=Msa1127890-mRNA-1:exon:22535;Parent=Msa1127890-mRNA-1
chr7_3 exon 79569781 79569909 79569781 ID=Msa1127890-mRNA-1:exon:22534;Parent=Msa1127890-mRNA-1
chr7_3 five_prime_UTR 79569781 79569909 79569781 ID=Msa1127890-mRNA-1:five_prime_utr;Parent=Msa1127890-mRNA-1
chr7_3 five_prime_UTR 79569638 79569650 79569638 ID=Msa1127890-mRNA-1:five_prime_utr;Parent=Msa1127890-mRNA-1
chr7_3 CDS 79569562 79569637 79569562 ID=Msa1127890-mRNA-1:cds;Parent=Msa1127890-mRNA-1
chr7_3 CDS 79568998 79569051 79568998 ID=Msa1127890-mRNA-1:cds;Parent=Msa1127890-mRNA-1
chr7_3 CDS 79568416 79568477 79568416 ID=Msa1127890-mRNA-1:cds;Parent=Msa1127890-mRNA-1
chr7_3 three_prime_UTR 79568126 79568415 79568126 ID=Msa1127890-mRNA-1:three_prime_utr;Parent=Msa1127890-mRNA-1
Gene Sequence

>Msa1127890

ATGGCAGAACTGAGTTTGGGAATTCTAATTGACATTGTTGATGAGGATTGGATGAGAGACATTCTTCCTCAAGATGATCTTCCACTGCCTCCAACACTGGTTGTTCGGACAGATGATACTGAGGACTCAAATCAGGAGGCACAACAAGTTAATAAGGATGCTTGGCACGATCTTGCCCTTGGCCAAGAGTAG

Protein sequence

>Msa1127890

MAELSLGILIDIVDEDWMRDILPQDDLPLPPTLVVRTDDTEDSNQEAQQVNKDAWHDLALGQE*