AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345450 MtrunA17_Chr2g0294341 100.000 110 0 0 1 110 1 110 1.49e-74 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345450 AT3G06610.1 80.000 110 21 1 1 109 1 110 2.34e-56 170

Find 40 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTTCCTATTATATTAA+TGG 0.194107 tig0007163:-3687 Msa1345450:three_prime_UTR
TATATTACAGTTGGACAAAA+AGG 0.268237 tig0007163:-3984 Msa1345450:intron
GCCCAACAAGCAACAAAATA+TGG 0.274707 tig0007163:+3608 None:intergenic
AATATAATAGGAACTTCTTT+AGG 0.285089 tig0007163:+3692 None:intergenic
ACTCTGCTGTTGCATGTCTT+TGG 0.288649 tig0007163:+7025 None:intergenic
TGCTTCACCATTAATATAAT+AGG 0.338544 tig0007163:+3680 None:intergenic
CTGCTTCTGCTGAAGCTGAT+TGG 0.380996 tig0007163:-6920 Msa1345450:CDS
TATTATATTAATGGTGAAGC+AGG 0.433387 tig0007163:-3678 Msa1345450:three_prime_UTR
CTTTAGGACCAGAAAATTTG+AGG 0.435403 tig0007163:+3708 None:intergenic
TGGAGACGAAGGAGTGGAGA+TGG 0.452107 tig0007163:-7057 Msa1345450:CDS
AGTGCAAGTAACAAAATAGT+TGG 0.453367 tig0007163:+3582 None:intergenic
TAAATCACATTCTGAAACAT+TGG 0.455290 tig0007163:+3872 None:intergenic
GATGATATGATATAGTTCAT+TGG 0.482040 tig0007163:-3788 Msa1345450:three_prime_UTR
AGGACCTTGCGTGAGCATAA+AGG 0.482732 tig0007163:-3953 Msa1345450:CDS
AGCTTCAGCAGAAGCAGCAA+TGG 0.492964 tig0007163:+6926 None:intergenic
GGAGGGTGGAGACGAAGGAG+TGG 0.517925 tig0007163:-7063 Msa1345450:CDS
TTTAGGACCAGAAAATTTGA+GGG 0.523666 tig0007163:+3709 None:intergenic
AGAAGCAGCAATGGAAGCCA+TGG 0.542542 tig0007163:+6935 None:intergenic
ATTGGAATGCTATGCGATTG+AGG 0.555435 tig0007163:-6902 Msa1345450:intron
CGTCATTTGCTTCACTAGTG+TGG 0.560043 tig0007163:-3911 Msa1345450:exon
TGGAATGATAAAACCATGGA+AGG 0.560527 tig0007163:+3628 None:intergenic
TCAAATGTGACAGCCTTCCA+TGG 0.560662 tig0007163:-3641 Msa1345450:three_prime_UTR
AACTCGTGTTCAAGAAGCCA+TGG 0.561938 tig0007163:-6952 Msa1345450:CDS
GCGGTCAGTGAGTTTATCGA+AGG 0.611692 tig0007163:+6998 None:intergenic
AGACGAAGGAGTGGAGATGG+TGG 0.620347 tig0007163:-7054 Msa1345450:CDS
TTCAGAAACGCTAAACTACA+CGG 0.629229 tig0007163:+7142 None:intergenic
GAACACGAGTTGAATCAAGC+TGG 0.629690 tig0007163:+6964 None:intergenic
GGAAGGCTGTCACATTTGAG+TGG 0.629781 tig0007163:+3645 None:intergenic
TATAATTGCAAACGAACTAG+AGG 0.633062 tig0007163:-4081 Msa1345450:intron
TCACATCATAGTATACATTG+AGG 0.637665 tig0007163:+3811 None:intergenic
AAAATGGAGGGTGGAGACGA+AGG 0.644266 tig0007163:-7068 Msa1345450:CDS
ATTATATTAATGGTGAAGCA+GGG 0.647366 tig0007163:-3677 Msa1345450:three_prime_UTR
AATATGGAATGATAAAACCA+TGG 0.648249 tig0007163:+3624 None:intergenic
CTAGTGAAGCAAATGACGAA+TGG 0.649500 tig0007163:+3916 None:intergenic
TAGTGTGGTAGAAACAAACA+AGG 0.650096 tig0007163:-3896 Msa1345450:three_prime_UTR
ATCACCTTTATGCTCACGCA+AGG 0.659657 tig0007163:+3949 None:intergenic
TAGGACCAGAAAATTTGAGG+GGG 0.670773 tig0007163:+3711 None:intergenic
TTAGGACCAGAAAATTTGAG+GGG 0.674228 tig0007163:+3710 None:intergenic
AGTGTGGTAGAAACAAACAA+GGG 0.777336 tig0007163:-3895 Msa1345450:three_prime_UTR
CAAGCTGGCGATCTTCAACG+CGG 0.793472 tig0007163:+6979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATATACCAAAATAT+AGG + tig0007163:4331-4350 None:intergenic 10.0%
!! AATAATCTTAAAACATATTA+TGG - tig0007163:4486-4505 Msa1345450:intron 10.0%
!!! AAATTGTTAATTTTGAATTT+TGG - tig0007163:5913-5932 Msa1345450:intron 10.0%
!!! AATTGTTAATTTTGAATTTT+GGG - tig0007163:5914-5933 Msa1345450:intron 10.0%
!!! AAAGTTTAATTTTTTCTGTA+TGG - tig0007163:4040-4059 Msa1345450:intron 15.0%
!!! AAGTTTAATTTTTTCTGTAT+GGG - tig0007163:4041-4060 Msa1345450:intron 15.0%
!!! AAATTGCTAATTTTTGAATT+TGG - tig0007163:5238-5257 Msa1345450:intron 15.0%
!!! AATTGCTAATTTTTGAATTT+GGG - tig0007163:5239-5258 Msa1345450:intron 15.0%
!!! AGTTCTTAAATTTTAATGTT+AGG - tig0007163:6138-6157 Msa1345450:intron 15.0%
!!! TTAAATTTTAATGTTAGGTT+TGG - tig0007163:6143-6162 Msa1345450:intron 15.0%
!! AAATATCAAAAAAAGAACAA+AGG + tig0007163:6262-6281 None:intergenic 15.0%
!! TAATCAATGAATCTAAAAAG+TGG + tig0007163:4294-4313 None:intergenic 20.0%
!!! AACTTAATGATGGAAATTAT+AGG - tig0007163:4646-4665 Msa1345450:intron 20.0%
!! AAAAACTATAGATCAAACTA+TGG - tig0007163:5106-5125 Msa1345450:intron 20.0%
!! TCAAAATCTATTTGCAAAAA+AGG + tig0007163:5215-5234 None:intergenic 20.0%
!!! ATTGCTAATTTTTGAATTTG+GGG - tig0007163:5240-5259 Msa1345450:intron 20.0%
!!! TATTCCTATTTTTTCTTTGT+AGG + tig0007163:5583-5602 None:intergenic 20.0%
!!! TCATATGTTCAACATTTTAA+TGG + tig0007163:6038-6057 None:intergenic 20.0%
!! TATAATACCAGAACATAAAA+AGG + tig0007163:6385-6404 None:intergenic 20.0%
!! ATTATATGTTGTATTACTAG+TGG - tig0007163:6399-6418 Msa1345450:intron 20.0%
!!! ATGTATTTTGATTGAATCAT+AGG - tig0007163:6591-6610 Msa1345450:intron 20.0%
!!! TGTATTTTGATTGAATCATA+GGG - tig0007163:6592-6611 Msa1345450:intron 20.0%
!!! GTAAATTTCTAGATAGATTT+CGG + tig0007163:6705-6724 None:intergenic 20.0%
!!! AGAAAAGTATGTTAATTGAT+TGG + tig0007163:6735-6754 None:intergenic 20.0%
!!! TACTTTTCTTATATTACAGT+TGG - tig0007163:6746-6765 Msa1345450:intron 20.0%
!! AATATAATAGGAACTTCTTT+AGG + tig0007163:7050-7069 None:intergenic 20.0%
!! AGAAGTTCCTATTATATTAA+TGG - tig0007163:7052-7071 Msa1345450:CDS 20.0%
!!! ATTGATTCAGTTTTTCTTTG+TGG - tig0007163:3875-3894 Msa1345450:three_prime_UTR 25.0%
!! TTGATTCAGTTTTTCTTTGT+GGG - tig0007163:3876-3895 Msa1345450:three_prime_UTR 25.0%
!!! AGAATGAGGTTTTTAGTTAT+TGG - tig0007163:3935-3954 Msa1345450:CDS 25.0%
!!! GAATGAGGTTTTTAGTTATT+GGG - tig0007163:3936-3955 Msa1345450:CDS 25.0%
!!! TTTTAGTTATTGGGAATTAG+AGG - tig0007163:3945-3964 Msa1345450:CDS 25.0%
! TTTAGTTATTGGGAATTAGA+GGG - tig0007163:3946-3965 Msa1345450:CDS 25.0%
! TTAATGACTCTATAAACAAG+TGG - tig0007163:4098-4117 Msa1345450:CDS 25.0%
!!! CATATCGATTTTAAGTTAGA+TGG - tig0007163:4142-4161 Msa1345450:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + tig0007163:4229-4248 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG + tig0007163:4270-4289 None:intergenic 25.0%
!! CATTGATTAACATCAATATC+TGG - tig0007163:4305-4324 Msa1345450:intron 25.0%
! TATTCAATGAACCTAAAATG+TGG - tig0007163:4367-4386 Msa1345450:intron 25.0%
!!! AACCTAAAATGTGGTTTTTT+AGG - tig0007163:4376-4395 Msa1345450:intron 25.0%
!!! TAAAATGTGGTTTTTTAGGT+GGG - tig0007163:4380-4399 Msa1345450:intron 25.0%
!! AGATTATTTTCATAAGCTCT+TGG + tig0007163:4474-4493 None:intergenic 25.0%
! TACTTAGGTTCTATTTGAAT+TGG + tig0007163:4601-4620 None:intergenic 25.0%
! ACCTAAGTACAATAAGTATA+TGG - tig0007163:4612-4631 Msa1345450:intron 25.0%
! TCCATATACTTATTGTACTT+AGG + tig0007163:4616-4635 None:intergenic 25.0%
! ATGCAATTCTAACTTAATGA+TGG - tig0007163:4636-4655 Msa1345450:intron 25.0%
!! CTATTTCTTACTACTTATGT+AGG + tig0007163:5074-5093 None:intergenic 25.0%
! ACATAAGTAGTAAGAAATAG+AGG - tig0007163:5074-5093 Msa1345450:intron 25.0%
! CATAAGTAGTAAGAAATAGA+GGG - tig0007163:5075-5094 Msa1345450:intron 25.0%
!! GTTTGATCTATAGTTTTTCT+TGG + tig0007163:5104-5123 None:intergenic 25.0%
! AATCTATTTGCAAAAAAGGT+GGG + tig0007163:5211-5230 None:intergenic 25.0%
! AAATCTATTTGCAAAAAAGG+TGG + tig0007163:5212-5231 None:intergenic 25.0%
!! TTGCTAATTTTTGAATTTGG+GGG - tig0007163:5241-5260 Msa1345450:intron 25.0%
! AAAGATGATGAAAGATCATT+AGG - tig0007163:5281-5300 Msa1345450:intron 25.0%
! ACAATACTTGTAATATTGCA+TGG - tig0007163:5489-5508 Msa1345450:intron 25.0%
! TAAAGATGCGAATCTTATAT+TGG - tig0007163:5550-5569 Msa1345450:intron 25.0%
! AATAGAAGTTCAATGATTAG+AGG - tig0007163:5599-5618 Msa1345450:intron 25.0%
!! TCTAACATGTTTTCTACAAT+AGG + tig0007163:5638-5657 None:intergenic 25.0%
! TATTTACTTCGAAATCTCTA+TGG + tig0007163:5785-5804 None:intergenic 25.0%
! ATAGAGATTTCGAAGTAAAT+AGG - tig0007163:5784-5803 Msa1345450:intron 25.0%
!!! TAAATACTCAAGTTGAAAAC+TGG + tig0007163:6210-6229 None:intergenic 25.0%
!! TCTGAAATTTCTAAAAGCAT+AGG - tig0007163:6231-6250 Msa1345450:intron 25.0%
! ATTTCTATACATAACTTCAG+GGG + tig0007163:6500-6519 None:intergenic 25.0%
! GATTTCTATACATAACTTCA+GGG + tig0007163:6501-6520 None:intergenic 25.0%
! TGATTTCTATACATAACTTC+AGG + tig0007163:6502-6521 None:intergenic 25.0%
! TATATTACAGTTGGACAAAA+AGG - tig0007163:6755-6774 Msa1345450:intron 25.0%
!!! TAAATCACATTCTGAAACAT+TGG + tig0007163:6870-6889 None:intergenic 25.0%
! GATGATATGATATAGTTCAT+TGG - tig0007163:6951-6970 Msa1345450:CDS 25.0%
! TGCTTCACCATTAATATAAT+AGG + tig0007163:7062-7081 None:intergenic 25.0%
! TATTATATTAATGGTGAAGC+AGG - tig0007163:7061-7080 Msa1345450:CDS 25.0%
! ATTATATTAATGGTGAAGCA+GGG - tig0007163:7062-7081 Msa1345450:CDS 25.0%
! AATATGGAATGATAAAACCA+TGG + tig0007163:7118-7137 None:intergenic 25.0%
! TAGCGTTTCTGAATTTTTCT+AGG - tig0007163:3607-3626 Msa1345450:three_prime_UTR 30.0%
! AGCGTTTCTGAATTTTTCTA+GGG - tig0007163:3608-3627 Msa1345450:three_prime_UTR 30.0%
TTAGTTATTGGGAATTAGAG+GGG - tig0007163:3947-3966 Msa1345450:CDS 30.0%
!!! TCGATTTTAAGTTAGATGGT+TGG - tig0007163:4146-4165 Msa1345450:intron 30.0%
!!! CGATTTTAAGTTAGATGGTT+GGG - tig0007163:4147-4166 Msa1345450:intron 30.0%
! TCAATATCTGGCCTATATTT+TGG - tig0007163:4317-4336 Msa1345450:intron 30.0%
! CACCTAAAAAACCACATTTT+AGG + tig0007163:4381-4400 None:intergenic 30.0%
!!! CTAAAATGTGGTTTTTTAGG+TGG - tig0007163:4379-4398 Msa1345450:intron 30.0%
! CTTTTCATAACTTTGGATGA+AGG + tig0007163:4713-4732 None:intergenic 30.0%
CTTCATCCAAAGTTATGAAA+AGG - tig0007163:4711-4730 Msa1345450:intron 30.0%
TAGAGGAAGATGTAAACAAT+AGG - tig0007163:4734-4753 Msa1345450:intron 30.0%
AACTTTACTGCACAACTATA+AGG - tig0007163:4841-4860 Msa1345450:intron 30.0%
TGGTGTCTACAAAGAAAAAT+AGG - tig0007163:4957-4976 Msa1345450:intron 30.0%
! TGCTATGTTTTCTACAATGA+GGG + tig0007163:5013-5032 None:intergenic 30.0%
ATCAAACTATGGTGATTTAG+AGG - tig0007163:5117-5136 Msa1345450:intron 30.0%
TTATCTTTGAACTTGATGCA+TGG - tig0007163:5148-5167 Msa1345450:intron 30.0%
ATCTATTTGCAAAAAAGGTG+GGG + tig0007163:5210-5229 None:intergenic 30.0%
TGAGTAATGAATAAGTTGCT+CGG - tig0007163:5330-5349 Msa1345450:intron 30.0%
!! AATTTTCCTTCAGGTTTGAA+TGG + tig0007163:5457-5476 None:intergenic 30.0%
TATTGCATGGAATTGAATGT+TGG - tig0007163:5502-5521 Msa1345450:intron 30.0%
ATGCGAATCTTATATTGGAT+TGG - tig0007163:5555-5574 Msa1345450:intron 30.0%
TTCAATGATTAGAGGAGATA+GGG - tig0007163:5607-5626 Msa1345450:intron 30.0%
ACATGTTAGAGTTTCATCTT+AGG - tig0007163:5648-5667 Msa1345450:intron 30.0%
ATAGAGGAAGTCAATATTGT+AGG - tig0007163:5754-5773 Msa1345450:intron 30.0%
CGAAGTAAATAGGTTATCTT+CGG - tig0007163:5794-5813 Msa1345450:intron 30.0%
! AAAACCCTTTTCCATTAGAT+GGG + tig0007163:5870-5889 None:intergenic 30.0%
!!! ATTTTGGGATTACTTACACA+TGG - tig0007163:5929-5948 Msa1345450:intron 30.0%
AAATGTTGAACATATGAAGC+AGG - tig0007163:6041-6060 Msa1345450:intron 30.0%
AATGTTGAACATATGAAGCA+GGG - tig0007163:6042-6061 Msa1345450:intron 30.0%
GTTGAAATTTACCAGTGTTT+GGG - tig0007163:6064-6083 Msa1345450:intron 30.0%
AATTTAAGAACTTTGTCTCG+AGG + tig0007163:6130-6149 None:intergenic 30.0%
! GAAATTTCTAAAAGCATAGG+AGG - tig0007163:6234-6253 Msa1345450:intron 30.0%
GTTCATCATTACAATGCAAA+GGG + tig0007163:6363-6382 None:intergenic 30.0%
! TGATGAACCTTTTTATGTTC+TGG - tig0007163:6375-6394 Msa1345450:intron 30.0%
!! AAGTACTTGTTTAGTTCTGA+AGG - tig0007163:6429-6448 Msa1345450:intron 30.0%
TTTACAAATACAGCCAAAAC+AGG + tig0007163:6541-6560 None:intergenic 30.0%
TATAATTGCAAACGAACTAG+AGG - tig0007163:6658-6677 Msa1345450:intron 30.0%
TCACATCATAGTATACATTG+AGG + tig0007163:6931-6950 None:intergenic 30.0%
! TTTAGGACCAGAAAATTTGA+GGG + tig0007163:7033-7052 None:intergenic 30.0%
!! TTCCATATTTTGTTGCTTGT+TGG - tig0007163:7129-7148 Msa1345450:five_prime_UTR 30.0%
!! TCCATATTTTGTTGCTTGTT+GGG - tig0007163:7130-7149 Msa1345450:five_prime_UTR 30.0%
AGTGCAAGTAACAAAATAGT+TGG + tig0007163:7160-7179 None:intergenic 30.0%
TTCAGAAACGCTAAACTACA+CGG + tig0007163:3600-3619 None:intergenic 35.0%
AAGAGAAGAGCGAACAAAAA+TGG - tig0007163:3655-3674 Msa1345450:three_prime_UTR 35.0%
! GTTCTTCTGTGTGAAGTTTT+TGG - tig0007163:3912-3931 Msa1345450:exon 35.0%
!! TGTGAAGTTTTTGGAGAATG+AGG - tig0007163:3921-3940 Msa1345450:CDS 35.0%
TAGTTATTGGGAATTAGAGG+GGG - tig0007163:3948-3967 Msa1345450:CDS 35.0%
AGAGATGTGAAGTTAAGTCT+TGG - tig0007163:4191-4210 Msa1345450:intron 35.0%
GGAAACACAATATTCCTGTT+TGG - tig0007163:4212-4231 Msa1345450:intron 35.0%
!! AGTGACAGGAATGGATTAAA+TGG + tig0007163:4256-4275 None:intergenic 35.0%
GCTTATAATAGTGACAGGAA+TGG + tig0007163:4265-4284 None:intergenic 35.0%
CATTGAATAACTGACGTATC+TGG + tig0007163:4356-4375 None:intergenic 35.0%
! ATGCTGCAATTCATCGTTTT+TGG - tig0007163:4677-4696 Msa1345450:intron 35.0%
!!! ATTCATCGTTTTTGGTACCT+TGG - tig0007163:4685-4704 Msa1345450:intron 35.0%
!!! TTCATCGTTTTTGGTACCTT+GGG - tig0007163:4686-4705 Msa1345450:intron 35.0%
! CCTCTACCTTTTCATAACTT+TGG + tig0007163:4720-4739 None:intergenic 35.0%
CCAAAGTTATGAAAAGGTAG+AGG - tig0007163:4717-4736 Msa1345450:intron 35.0%
!! TCTAAGCAGAGTTGATGAAA+AGG - tig0007163:4758-4777 Msa1345450:intron 35.0%
AAAGAAACACTCAAACCTTG+AGG - tig0007163:4816-4835 Msa1345450:intron 35.0%
CATGGAGTTGAATATTGGTA+TGG - tig0007163:4876-4895 Msa1345450:intron 35.0%
GAGTTGAATATTGGTATGGA+TGG - tig0007163:4880-4899 Msa1345450:intron 35.0%
ACAGCACTAAATTTCCTTGT+TGG + tig0007163:4913-4932 None:intergenic 35.0%
TAGAGATGAGAATCTTGTAC+TGG - tig0007163:4932-4951 Msa1345450:intron 35.0%
ATGAGAATCTTGTACTGGAT+TGG - tig0007163:4937-4956 Msa1345450:intron 35.0%
! CTGCTATGTTTTCTACAATG+AGG + tig0007163:5014-5033 None:intergenic 35.0%
CATACCAAACAACCTAAGAT+GGG + tig0007163:5040-5059 None:intergenic 35.0%
ACATACCAAACAACCTAAGA+TGG + tig0007163:5041-5060 None:intergenic 35.0%
TTTGAACTTGATGCATGGAA+GGG - tig0007163:5153-5172 Msa1345450:intron 35.0%
ATTTGGGGGTAAATTACACA+TGG - tig0007163:5255-5274 Msa1345450:intron 35.0%
! TGAAAGATCATTAGGCCTTT+TGG - tig0007163:5289-5308 Msa1345450:intron 35.0%
!!! ATTAGGCCTTTTGGTTTGAT+GGG - tig0007163:5298-5317 Msa1345450:intron 35.0%
TGAATAAGTTGCTCGGTTAA+AGG - tig0007163:5337-5356 Msa1345450:intron 35.0%
TCTAAGTAGAGTGGATCAAA+TGG - tig0007163:5394-5413 Msa1345450:intron 35.0%
! TGAGCAGTAAATTTTCCTTC+AGG + tig0007163:5466-5485 None:intergenic 35.0%
GGTGCCTACAAAGAAAAAAT+AGG - tig0007163:5576-5595 Msa1345450:intron 35.0%
GTTCAATGATTAGAGGAGAT+AGG - tig0007163:5606-5625 Msa1345450:intron 35.0%
TGTTAGAGTTTCATCTTAGG+TGG - tig0007163:5651-5670 Msa1345450:intron 35.0%
AGTTTCATCTTAGGTGGTTT+GGG - tig0007163:5657-5676 Msa1345450:intron 35.0%
GAGAAAACCTGTATAAGCAA+TGG - tig0007163:5688-5707 Msa1345450:intron 35.0%
AAACCTGTATAAGCAATGGT+TGG - tig0007163:5692-5711 Msa1345450:intron 35.0%
AACCTGTATAAGCAATGGTT+GGG - tig0007163:5693-5712 Msa1345450:intron 35.0%
AGTCATACAGTAAGAGATAG+AGG - tig0007163:5738-5757 Msa1345450:intron 35.0%
AAATAGGTTATCTTCGGACA+TGG - tig0007163:5800-5819 Msa1345450:intron 35.0%
! CAAAACCCTTTTCCATTAGA+TGG + tig0007163:5871-5890 None:intergenic 35.0%
! CATCTAATGGAAAAGGGTTT+TGG - tig0007163:5869-5888 Msa1345450:intron 35.0%
GAAGTTCATGAAAGACCATT+AGG - tig0007163:5955-5974 Msa1345450:intron 35.0%
!!! ATTAGGCCTTTTGGCTTAAT+GGG - tig0007163:5972-5991 Msa1345450:intron 35.0%
!! GTAATGACTAGGTTGGTTAA+AGG - tig0007163:6007-6026 Msa1345450:intron 35.0%
GGTTGAAATTTACCAGTGTT+TGG - tig0007163:6063-6082 Msa1345450:intron 35.0%
AACATGCTAGTGTAAGTACT+AGG - tig0007163:6095-6114 Msa1345450:intron 35.0%
TAGTGTAAGTACTAGGAACA+GGG - tig0007163:6102-6121 Msa1345450:intron 35.0%
! GAAAACTGGCACAGTTTTTA+GGG + tig0007163:6196-6215 None:intergenic 35.0%
! TGAAAACTGGCACAGTTTTT+AGG + tig0007163:6197-6216 None:intergenic 35.0%
ATCTTTGTTGCGCAAATGAA+TGG + tig0007163:6288-6307 None:intergenic 35.0%
GGTTCATCATTACAATGCAA+AGG + tig0007163:6364-6383 None:intergenic 35.0%
ATTACAGTTGGACAAAAAGG+TGG - tig0007163:6758-6777 Msa1345450:intron 35.0%
TAGTGTGGTAGAAACAAACA+AGG - tig0007163:6843-6862 Msa1345450:intron 35.0%
AGTGTGGTAGAAACAAACAA+GGG - tig0007163:6844-6863 Msa1345450:intron 35.0%
TTAGGACCAGAAAATTTGAG+GGG + tig0007163:7032-7051 None:intergenic 35.0%
!! CTTTAGGACCAGAAAATTTG+AGG + tig0007163:7034-7053 None:intergenic 35.0%
TGGAATGATAAAACCATGGA+AGG + tig0007163:7114-7133 None:intergenic 35.0%
AGAAGAGCGAACAAAAATGG+AGG - tig0007163:3658-3677 Msa1345450:three_prime_UTR 40.0%
GAAGAGCGAACAAAAATGGA+GGG - tig0007163:3659-3678 Msa1345450:three_prime_UTR 40.0%
ATTGGAATGCTATGCGATTG+AGG - tig0007163:3837-3856 Msa1345450:three_prime_UTR 40.0%
AGTTATTGGGAATTAGAGGG+GGG - tig0007163:3949-3968 Msa1345450:CDS 40.0%
!! AAGCAGAGTTGATGAAAAGG+AGG - tig0007163:4761-4780 Msa1345450:intron 40.0%
! GTGCAGTAAAGTTTTCCTCA+AGG + tig0007163:4834-4853 None:intergenic 40.0%
TACTGCACAACTATAAGGCT+TGG - tig0007163:4846-4865 Msa1345450:intron 40.0%
TGCTGCATGGAGTTGAATAT+TGG - tig0007163:4871-4890 Msa1345450:intron 40.0%
TGGATGGTATACAACCAACA+AGG - tig0007163:4896-4915 Msa1345450:intron 40.0%
CTTTGAACTTGATGCATGGA+AGG - tig0007163:5152-5171 Msa1345450:intron 40.0%
TGATGCATGGAAGGGATTTA+TGG - tig0007163:5161-5180 Msa1345450:intron 40.0%
ATTTGCAAAAAAGGTGGGGT+CGG + tig0007163:5206-5225 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGTTTGA+TGG - tig0007163:5297-5316 Msa1345450:intron 40.0%
!!! TTAGGCCTTTTGGTTTGATG+GGG - tig0007163:5299-5318 Msa1345450:intron 40.0%
AATAGCCCCATCAAACCAAA+AGG + tig0007163:5307-5326 None:intergenic 40.0%
ATAAGTTGCTCGGTTAAAGG+TGG - tig0007163:5340-5359 Msa1345450:intron 40.0%
ACAAGCACGGTTAAAATGCT+GGG - tig0007163:5364-5383 Msa1345450:intron 40.0%
AAGTAGAGTGGATCAAATGG+AGG - tig0007163:5397-5416 Msa1345450:intron 40.0%
! GAAGTACCATTCAAACCTGA+AGG - tig0007163:5448-5467 Msa1345450:intron 40.0%
GCATGGAATTGAATGTTGGA+TGG - tig0007163:5506-5525 Msa1345450:intron 40.0%
GAGTTTCATCTTAGGTGGTT+TGG - tig0007163:5656-5675 Msa1345450:intron 40.0%
TTATCTTCGGACATGGTACA+TGG - tig0007163:5807-5826 Msa1345450:intron 40.0%
ATATAGCCGATCCCATCTAA+TGG - tig0007163:5856-5875 Msa1345450:intron 40.0%
! CCTTTTCCATTAGATGGGAT+CGG + tig0007163:5865-5884 None:intergenic 40.0%
CGATCCCATCTAATGGAAAA+GGG - tig0007163:5863-5882 Msa1345450:intron 40.0%
!!! GGGTTTTGGTTGATGCAAAT+AGG - tig0007163:5883-5902 Msa1345450:intron 40.0%
! TGGTTGATGCAAATAGGTTG+AGG - tig0007163:5889-5908 Msa1345450:intron 40.0%
! TGAAAGACCATTAGGCCTTT+TGG - tig0007163:5963-5982 Msa1345450:intron 40.0%
CATTAAGCCAAAAGGCCTAA+TGG + tig0007163:5973-5992 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGCTTAA+TGG - tig0007163:5971-5990 Msa1345450:intron 40.0%
AATGGTCCCATTAAGCCAAA+AGG + tig0007163:5981-6000 None:intergenic 40.0%
CCTAGTCATTACCAAGTGAA+TGG + tig0007163:5999-6018 None:intergenic 40.0%
!! CCATTCACTTGGTAATGACT+AGG - tig0007163:5996-6015 Msa1345450:intron 40.0%
!! TCACTTGGTAATGACTAGGT+TGG - tig0007163:6000-6019 Msa1345450:intron 40.0%
CTAGTGTAAGTACTAGGAAC+AGG - tig0007163:6101-6120 Msa1345450:intron 40.0%
ACAAATACAGCCAAAACAGG+AGG + tig0007163:6538-6557 None:intergenic 40.0%
TTCCTTGTCTCTCTAAACTG+TGG - tig0007163:6567-6586 Msa1345450:intron 40.0%
TACCACAGTTTAGAGAGACA+AGG + tig0007163:6572-6591 None:intergenic 40.0%
CTAGTGAAGCAAATGACGAA+TGG + tig0007163:6826-6845 None:intergenic 40.0%
TAGGACCAGAAAATTTGAGG+GGG + tig0007163:7031-7050 None:intergenic 40.0%
GCCCAACAAGCAACAAAATA+TGG + tig0007163:7134-7153 None:intergenic 40.0%
ACTCTGCTGTTGCATGTCTT+TGG + tig0007163:3717-3736 None:intergenic 45.0%
! GAACACGAGTTGAATCAAGC+TGG + tig0007163:3778-3797 None:intergenic 45.0%
AACTCGTGTTCAAGAAGCCA+TGG - tig0007163:3787-3806 Msa1345450:three_prime_UTR 45.0%
GTTATTGGGAATTAGAGGGG+GGG - tig0007163:3950-3969 Msa1345450:CDS 45.0%
!!! AGGGGGGGTGTAGTTTTTTT+GGG - tig0007163:3965-3984 Msa1345450:CDS 45.0%
!!! GGGTGTAGTTTTTTTGGGGA+GGG - tig0007163:3970-3989 Msa1345450:CDS 45.0%
!!! GGTGTAGTTTTTTTGGGGAG+GGG - tig0007163:3971-3990 Msa1345450:CDS 45.0%
!!! GTGTAGTTTTTTTGGGGAGG+GGG - tig0007163:3972-3991 Msa1345450:CDS 45.0%
AACTTTGGATGAAGGACCCA+AGG + tig0007163:4705-4724 None:intergenic 45.0%
ATAAGGCTTGGAATGCTGCA+TGG - tig0007163:4858-4877 Msa1345450:intron 45.0%
ACATAGCAGAGTCCCATCTT+AGG - tig0007163:5025-5044 Msa1345450:intron 45.0%
! GAGTCCCATCTTAGGTTGTT+TGG - tig0007163:5033-5052 Msa1345450:intron 45.0%
CACAAGCACGGTTAAAATGC+TGG - tig0007163:5363-5382 Msa1345450:intron 45.0%
CAAGCACGGTTAAAATGCTG+GGG - tig0007163:5365-5384 Msa1345450:intron 45.0%
ACGGTTAAAATGCTGGGGAT+AGG - tig0007163:5370-5389 Msa1345450:intron 45.0%
GGGATAGGATCTAAGTAGAG+TGG - tig0007163:5385-5404 Msa1345450:intron 45.0%
CTCCCAACCATTGCTTATAC+AGG + tig0007163:5698-5717 None:intergenic 45.0%
!! GGAGTGTTGAGAAGATGGAA+AGG - tig0007163:5714-5733 Msa1345450:intron 45.0%
CCGATCCCATCTAATGGAAA+AGG - tig0007163:5862-5881 Msa1345450:intron 45.0%
GCTTAATGGGACCATTCACT+TGG - tig0007163:5985-6004 Msa1345450:intron 45.0%
GTTGTAACAGACCCAAACAC+TGG + tig0007163:6078-6097 None:intergenic 45.0%
!!! ACTGGCACAGTTTTTAGGGT+GGG + tig0007163:6192-6211 None:intergenic 45.0%
!! AACTGGCACAGTTTTTAGGG+TGG + tig0007163:6193-6212 None:intergenic 45.0%
! CTCCATTGTACCTCCTGTTT+TGG - tig0007163:6525-6544 Msa1345450:intron 45.0%
! AGCCAAAACAGGAGGTACAA+TGG + tig0007163:6530-6549 None:intergenic 45.0%
TGGACAAAAAGGTGGCTGAA+AGG - tig0007163:6766-6785 Msa1345450:intron 45.0%
ATCACCTTTATGCTCACGCA+AGG + tig0007163:6793-6812 None:intergenic 45.0%
CGTCATTTGCTTCACTAGTG+TGG - tig0007163:6828-6847 Msa1345450:intron 45.0%
ACCAGAAAATTTGAGGGGGT+GGG + tig0007163:7027-7046 None:intergenic 45.0%
TCAAATGTGACAGCCTTCCA+TGG - tig0007163:7098-7117 Msa1345450:five_prime_UTR 45.0%
GAGCGAACAAAAATGGAGGG+TGG - tig0007163:3662-3681 Msa1345450:three_prime_UTR 50.0%
AAAATGGAGGGTGGAGACGA+AGG - tig0007163:3671-3690 Msa1345450:three_prime_UTR 50.0%
GCGGTCAGTGAGTTTATCGA+AGG + tig0007163:3744-3763 None:intergenic 50.0%
AGAAGCAGCAATGGAAGCCA+TGG + tig0007163:3807-3826 None:intergenic 50.0%
AGCTTCAGCAGAAGCAGCAA+TGG + tig0007163:3816-3835 None:intergenic 50.0%
CTGCTTCTGCTGAAGCTGAT+TGG - tig0007163:3819-3838 Msa1345450:three_prime_UTR 50.0%
!!! GAGGGGGGGTGTAGTTTTTT+TGG - tig0007163:3964-3983 Msa1345450:CDS 50.0%
!!! GGGGGGGTGTAGTTTTTTTG+GGG - tig0007163:3966-3985 Msa1345450:CDS 50.0%
!!! GGGGTGTAGTTTTTTTGGGG+AGG - tig0007163:3969-3988 Msa1345450:CDS 50.0%
!!! TTTTTTTGGGGAGGGGGTGT+TGG - tig0007163:3978-3997 Msa1345450:intron 50.0%
GGTTAAAGGTGGCACAAGCA+CGG - tig0007163:5351-5370 Msa1345450:intron 50.0%
! TTAGGTGGTTTGGGCATGTG+CGG - tig0007163:5666-5685 Msa1345450:intron 50.0%
!! GGTTGGGAGTGTTGAGAAGA+TGG - tig0007163:5709-5728 Msa1345450:intron 50.0%
TTCGGACATGGTACATGGCA+GGG - tig0007163:5812-5831 Msa1345450:intron 50.0%
! TGGTACATGGCAGGGCATTA+TGG - tig0007163:5820-5839 Msa1345450:intron 50.0%
!!! CTGGCACAGTTTTTAGGGTG+GGG + tig0007163:6191-6210 None:intergenic 50.0%
AGGACCTTGCGTGAGCATAA+AGG - tig0007163:6786-6805 Msa1345450:intron 50.0%
CAGAAAATTTGAGGGGGTGG+GGG + tig0007163:7025-7044 None:intergenic 50.0%
CCAGAAAATTTGAGGGGGTG+GGG + tig0007163:7026-7045 None:intergenic 50.0%
GACCAGAAAATTTGAGGGGG+TGG + tig0007163:7028-7047 None:intergenic 50.0%
GGAAGGCTGTCACATTTGAG+TGG + tig0007163:7097-7116 None:intergenic 50.0%
TGGAGACGAAGGAGTGGAGA+TGG - tig0007163:3682-3701 Msa1345450:three_prime_UTR 55.0%
AGACGAAGGAGTGGAGATGG+TGG - tig0007163:3685-3704 Msa1345450:three_prime_UTR 55.0%
CAAGCTGGCGATCTTCAACG+CGG + tig0007163:3763-3782 None:intergenic 55.0%
CTTCGGACATGGTACATGGC+AGG - tig0007163:5811-5830 Msa1345450:intron 55.0%
! CCCCACCCCCTCAAATTTTC+TGG - tig0007163:7023-7042 Msa1345450:CDS 55.0%
GGAGGGTGGAGACGAAGGAG+TGG - tig0007163:3676-3695 Msa1345450:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0007163 gene 3573 7188 3573 ID=Msa1345450;Name=Msa1345450
tig0007163 mRNA 3573 7188 3573 ID=Msa1345450-mRNA-1;Parent=Msa1345450;Name=Msa1345450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|1|1|3|343|110
tig0007163 exon 3573 3996 3573 ID=Msa1345450-mRNA-1:exon:4999;Parent=Msa1345450-mRNA-1
tig0007163 exon 4082 4148 4082 ID=Msa1345450-mRNA-1:exon:4998;Parent=Msa1345450-mRNA-1
tig0007163 exon 6903 7188 6903 ID=Msa1345450-mRNA-1:exon:4997;Parent=Msa1345450-mRNA-1
tig0007163 five_prime_UTR 7088 7188 7088 ID=Msa1345450-mRNA-1:five_prime_utr;Parent=Msa1345450-mRNA-1
tig0007163 CDS 6903 7087 6903 ID=Msa1345450-mRNA-1:cds;Parent=Msa1345450-mRNA-1
tig0007163 CDS 4082 4148 4082 ID=Msa1345450-mRNA-1:cds;Parent=Msa1345450-mRNA-1
tig0007163 CDS 3916 3996 3916 ID=Msa1345450-mRNA-1:cds;Parent=Msa1345450-mRNA-1
tig0007163 three_prime_UTR 3573 3915 3573 ID=Msa1345450-mRNA-1:three_prime_utr;Parent=Msa1345450-mRNA-1
Gene Sequence

>Msa1345450

ATGGAGGGTGGAGACGAAGGAGTGGAGATGGTGGTTGATTCCAAAGACATGCAACAGCAGAGTAAAGCCTTCGATAAACTCACTGACCGCGTTGAAGATCGCCAGCTTGATTCAACTCGTGTTCAAGAAGCCATGGCTTCCATTGCTGCTTCTGCTGAAGCTGATTGGAATGCTATGCGATTGAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCAGATGTTGATATAATTGCAAACGAACTAGAGTTGGACAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGTCATTTGCTTCACTAG

Protein sequence

>Msa1345450

MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH*