AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749760 MtrunA17_Chr5g0396371 91.192 193 7 2 1 183 1 193 2.00e-124 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749760 AT1G51510.1 57.542 179 56 7 9 168 7 184 1.09e-60 187
Msa0749760 AT5G64200.2 33.333 99 64 2 73 170 8 105 5.77e-11 60.5
Msa0749760 AT5G64200.1 33.333 99 64 2 73 170 8 105 5.77e-11 60.5

Find 65 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTCTATTATGGTTTA+TGG 0.120038 5_2:+3268051 Msa0749760:three_prime_UTR
CACAAACCATTTATGTTGAT+TGG 0.221624 5_2:+3266007 Msa0749760:CDS
TATTAACTCAAAGTCTATTA+TGG 0.252809 5_2:+3268044 Msa0749760:three_prime_UTR
GTGATGGCGGGATTTGAGTT+TGG 0.261440 5_2:-3263370 None:intergenic
TATTGAAGGATGGATTATTT+TGG 0.283878 5_2:+3263612 Msa0749760:CDS
AACTCTCGTCTCGCTGATTC+CGG 0.283971 5_2:+3263454 Msa0749760:CDS
GAGGAAGATAGTATCTCTTT+TGG 0.289491 5_2:+3268150 Msa0749760:three_prime_UTR
GAAAGCCCAATCAACATAAA+TGG 0.296555 5_2:-3266013 None:intergenic
CGCCGCCGACGGAGAAGCTT+TGG 0.306556 5_2:+3263275 Msa0749760:CDS
TGATGGCGGGATTTGAGTTT+GGG 0.356254 5_2:-3263369 None:intergenic
GATGATTTGCAGAATGCTTT+TGG 0.361063 5_2:+3263664 Msa0749760:CDS
CTTCTAACTGACTCATTGAT+AGG 0.375297 5_2:-3266045 None:intergenic
ACAAACCATTTATGTTGATT+GGG 0.381801 5_2:+3266008 Msa0749760:CDS
CGGGATTTGAGTTTGGGATG+TGG 0.401403 5_2:-3263363 None:intergenic
GCAGACCTCAGCGGCGCTCC+AGG 0.401643 5_2:+3267829 Msa0749760:intron
CTCACTGCTGAGGGTGGTCC+TGG 0.420911 5_2:+3263487 Msa0749760:CDS
GCCAGAGGAAGATGACTTGA+TGG 0.429124 5_2:+3263305 Msa0749760:CDS
ATGAGTCAGTTAGAAGAAAC+AGG 0.431891 5_2:+3266052 Msa0749760:CDS
GAGACGAGAGTTACGGTTAG+AGG 0.454033 5_2:-3263443 None:intergenic
CAAAGGTCGCGGTTTCCGTC+AGG 0.458944 5_2:+3263411 Msa0749760:intron
GGATTGCGTCTTGTGTGTGA+TGG 0.470406 5_2:+3268171 Msa0749760:three_prime_UTR
TTGAATCTTGATCGCCGTAC+TGG 0.470728 5_2:+3263715 Msa0749760:CDS
TCTCCTCCTAGGAGGACTCC+TGG 0.475841 5_2:-3267847 None:intergenic
GATTTCTATTTGTCCAGTTG+TGG 0.476460 5_2:+3267933 Msa0749760:three_prime_UTR
AGAGTTACGGTTAGAGGAAT+CGG 0.477329 5_2:-3263437 None:intergenic
TCCATCAAGTCATCTTCCTC+TGG 0.480725 5_2:-3263306 None:intergenic
CCGTCAGACAAAATACATAT+CGG 0.482615 5_2:+3267983 Msa0749760:three_prime_UTR
GTTGATTGGGCTTTCAGCAG+TGG 0.486700 5_2:+3266021 Msa0749760:CDS
CTCTATTCAGCGACGATGCA+AGG 0.487696 5_2:+3263249 None:intergenic
AATGCAATAGAGAATTTGAA+TGG 0.500993 5_2:+3265970 Msa0749760:CDS
TGTATTGTATTGTATTTACA+TGG 0.506811 5_2:+3268293 Msa0749760:three_prime_UTR
CCCTTTCAATATCTCCTCCT+AGG 0.518724 5_2:-3267858 None:intergenic
GGGATGTGGAGGAGAAGCTT+CGG 0.519462 5_2:-3263349 None:intergenic
GATTGCGTCTTGTGTGTGAT+GGG 0.524426 5_2:+3268172 Msa0749760:three_prime_UTR
AGCAGTGAGAGTATCGAAAC+CGG 0.528470 5_2:-3263473 None:intergenic
TTCGATACTCTCACTGCTGA+GGG 0.535196 5_2:+3263478 Msa0749760:CDS
ATGCAAGGAAGCGCCGCCGA+CGG 0.548735 5_2:+3263264 Msa0749760:CDS
TCCTAGGAGGAGATATTGAA+AGG 0.548743 5_2:+3267857 Msa0749760:exon
GGCGCTCCAGGAGTCCTCCT+AGG 0.551753 5_2:+3267841 Msa0749760:CDS
GGACTCCTGGAGCGCCGCTG+AGG 0.554772 5_2:-3267834 None:intergenic
TTGGGAACGGAAGTGATGGC+GGG 0.557928 5_2:-3263382 None:intergenic
AAAATACATATCGGTTGTTG+AGG 0.562247 5_2:+3267992 Msa0749760:three_prime_UTR
ATGAGCGCTCTGAGGAAGCT+CGG 0.562915 5_2:+3265947 Msa0749760:CDS
AATCAGCGAGACGAGAGTTA+CGG 0.563114 5_2:-3263450 None:intergenic
GATGACTTGATGGACGAAGA+AGG 0.572561 5_2:+3263315 Msa0749760:CDS
GATTTGAGTTTGGGATGTGG+AGG 0.573507 5_2:-3263360 None:intergenic
ATACAATACAATACAATACA+TGG 0.578585 5_2:-3268275 None:intergenic
AGCTTTGGATTTCGAGCCAG+AGG 0.579650 5_2:+3263290 Msa0749760:CDS
GACGGAAGCTGCATAAGTAT+AGG 0.580468 5_2:-3267965 None:intergenic
ATCCAAAGCTTCTCCGTCGG+CGG 0.583085 5_2:-3263277 None:intergenic
CCTAGGAGGAGATATTGAAA+GGG 0.586913 5_2:+3267858 Msa0749760:exon
TTTCGATACTCTCACTGCTG+AGG 0.590321 5_2:+3263477 Msa0749760:CDS
TTTGGGAACGGAAGTGATGG+CGG 0.597954 5_2:-3263383 None:intergenic
GCTCCAGGAGTCCTCCTAGG+AGG 0.642226 5_2:+3267844 Msa0749760:CDS
TTTCAATATCTCCTCCTAGG+AGG 0.646524 5_2:-3267855 None:intergenic
GATACTCTCACTGCTGAGGG+TGG 0.647746 5_2:+3263481 Msa0749760:CDS
TATACATGATGTCAGTTGTG+TGG 0.649704 5_2:+3267892 Msa0749760:three_prime_UTR
GCACCTTAACAAAACCAGTA+CGG 0.658816 5_2:-3263729 None:intergenic
TTTGGTGACTGGTGTACATG+AGG 0.661358 5_2:+3263630 Msa0749760:CDS
TAGAGGAATCGGAATCCTGA+CGG 0.677725 5_2:-3263426 None:intergenic
GATTGAATATGAGCGCTCTG+AGG 0.688874 5_2:+3265939 Msa0749760:CDS
CAATACAATACAATACATGG+TGG 0.700385 5_2:-3268272 None:intergenic
GAAATCCAAAGCTTCTCCGT+CGG 0.701772 5_2:-3263280 None:intergenic
TATGTAATGACATTGTGTTG+AGG 0.711007 5_2:+3268131 Msa0749760:three_prime_UTR
TTGTGTGGAACTTAAATGAG+CGG 0.731925 5_2:+3267907 Msa0749760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAATAAAATAAGATA+AGG - chr5_2:3265660-3265679 None:intergenic 10.0%
!!! TATCTTATTTTATTAAGAAA+AGG + chr5_2:3265660-3265679 Msa0749760:intron 10.0%
!! AATTGACAAAAATTGAAATT+GGG - chr5_2:3263533-3263552 None:intergenic 15.0%
!! AAATTGACAAAAATTGAAAT+TGG - chr5_2:3263534-3263553 None:intergenic 15.0%
!!! TACTTTTCATTCTTAAATTA+TGG + chr5_2:3263969-3263988 Msa0749760:intron 15.0%
!! TTGAAAAAAAAAAAAAAGGA+AGG + chr5_2:3264436-3264455 Msa0749760:intron 15.0%
!!! AATTTAATTTTATGATAGAG+AGG + chr5_2:3267109-3267128 Msa0749760:intron 15.0%
!! TAATACAAAAAATAAGCAAT+TGG + chr5_2:3267194-3267213 Msa0749760:intron 15.0%
!! AAACTATGAAAAGTTTATAA+GGG - chr5_2:3267778-3267797 None:intergenic 15.0%
!! TAAACTATGAAAAGTTTATA+AGG - chr5_2:3267779-3267798 None:intergenic 15.0%
!! ATTGACAAAAATTGAAATTG+GGG - chr5_2:3263532-3263551 None:intergenic 20.0%
!! AGAAGAAAAAAAAAAAAGGA+AGG - chr5_2:3264330-3264349 None:intergenic 20.0%
!! TGGAAGAAGAAAAAAAAAAA+AGG - chr5_2:3264334-3264353 None:intergenic 20.0%
!!! GGCTTTGAAAAAAAAAAAAA+AGG + chr5_2:3264432-3264451 Msa0749760:intron 20.0%
!! TTGAGAAATATATGGAAAAA+TGG - chr5_2:3264640-3264659 None:intergenic 20.0%
!! TTTATAGACAGTGTATATTA+CGG - chr5_2:3264830-3264849 None:intergenic 20.0%
!! TTTGAAAAAAAAATACTGCA+GGG - chr5_2:3265458-3265477 None:intergenic 20.0%
!! ATTTGAAAAAAAAATACTGC+AGG - chr5_2:3265459-3265478 None:intergenic 20.0%
!!! AATGCAGTTTTGATTTTTAA+AGG + chr5_2:3265504-3265523 Msa0749760:intron 20.0%
!!! TACTTGTAATTTTGTAAACA+GGG + chr5_2:3265703-3265722 Msa0749760:intron 20.0%
!!! TGATAAGCATTTTGATTTTA+GGG + chr5_2:3265907-3265926 Msa0749760:intron 20.0%
!!! AAGAAACAGGTAATTTATTT+TGG + chr5_2:3266065-3266084 Msa0749760:intron 20.0%
!!! TTGGTTTTATATTTATCTAC+AGG + chr5_2:3266084-3266103 Msa0749760:intron 20.0%
!!! TGGTTTTATATTTATCTACA+GGG + chr5_2:3266085-3266104 Msa0749760:intron 20.0%
!! TTTACATCATTTATTTGAGT+TGG + chr5_2:3266167-3266186 Msa0749760:intron 20.0%
!!! GCAAAAATAAATTTTACAGT+TGG - chr5_2:3266645-3266664 None:intergenic 20.0%
!! ATATATATAAAATGTGCAGT+AGG - chr5_2:3266706-3266725 None:intergenic 20.0%
!! AAAAAATAAGCAATTGGAAA+GGG + chr5_2:3267200-3267219 Msa0749760:intron 20.0%
!!! TTCTTTTCAATTTTGTGAAT+CGG - chr5_2:3267276-3267295 None:intergenic 20.0%
!! ATATATAATTCTCTTCTTTG+TGG + chr5_2:3267533-3267552 Msa0749760:intron 20.0%
!! AAGTTATTTAACGATAATCT+AGG - chr5_2:3267591-3267610 None:intergenic 20.0%
!! AACTATGAAAAGTTTATAAG+GGG - chr5_2:3267777-3267796 None:intergenic 20.0%
!! TATTAACTCAAAGTCTATTA+TGG + chr5_2:3268044-3268063 Msa0749760:three_prime_UTR 20.0%
!! ATACAATACAATACAATACA+TGG - chr5_2:3268278-3268297 None:intergenic 20.0%
!! TGTATTGTATTGTATTTACA+TGG + chr5_2:3268293-3268312 Msa0749760:three_prime_UTR 20.0%
!!! AATTGCGTGATTTTGATTTT+AGG + chr5_2:3263554-3263573 Msa0749760:intron 25.0%
!!! ATTGCGTGATTTTGATTTTA+GGG + chr5_2:3263555-3263574 Msa0749760:intron 25.0%
!!! TATTGAAGGATGGATTATTT+TGG + chr5_2:3263612-3263631 Msa0749760:CDS 25.0%
!!! GTATAGATTGACTAGTTTTA+TGG + chr5_2:3263828-3263847 Msa0749760:intron 25.0%
!! TTTGAAGTAGGAAATGTATA+TGG + chr5_2:3263885-3263904 Msa0749760:intron 25.0%
! GTGTATTAATCTATGTTGTT+GGG - chr5_2:3264116-3264135 None:intergenic 25.0%
! AGTGTATTAATCTATGTTGT+TGG - chr5_2:3264117-3264136 None:intergenic 25.0%
! AAACAAAACCCTCATAATTT+GGG - chr5_2:3264243-3264262 None:intergenic 25.0%
! AAAACAAAACCCTCATAATT+TGG - chr5_2:3264244-3264263 None:intergenic 25.0%
! TTACCATTAATCAATCACTT+AGG - chr5_2:3264677-3264696 None:intergenic 25.0%
! CAGAAGGTTAACAATAAAAA+AGG - chr5_2:3264715-3264734 None:intergenic 25.0%
!!! CTTTTTTATTGTTAACCTTC+TGG + chr5_2:3264713-3264732 Msa0749760:intron 25.0%
!! TGAATCAGAAGATCTATTTT+CGG + chr5_2:3264785-3264804 Msa0749760:intron 25.0%
! TCATGACTTGAATTATTTGA+AGG - chr5_2:3264918-3264937 None:intergenic 25.0%
! AATTCAAGTCATGAATCAAA+TGG + chr5_2:3264924-3264943 Msa0749760:intron 25.0%
! GTGTATCATTGTATCTATAT+GGG - chr5_2:3265070-3265089 None:intergenic 25.0%
! TGTGTATCATTGTATCTATA+TGG - chr5_2:3265071-3265090 None:intergenic 25.0%
!!! TTGATTTTTAAAGGATGTAG+TGG + chr5_2:3265513-3265532 Msa0749760:intron 25.0%
!! CTACTTGTAATTTTGTAAAC+AGG + chr5_2:3265702-3265721 Msa0749760:intron 25.0%
! ATGATGTATGAACATAGAAA+CGG - chr5_2:3265762-3265781 None:intergenic 25.0%
! CTAAATAAAGTTACAGGAAA+AGG - chr5_2:3265829-3265848 None:intergenic 25.0%
! AAGTTGCTAAATAAAGTTAC+AGG - chr5_2:3265835-3265854 None:intergenic 25.0%
! CAAATCTTCACATGATAAAA+TGG - chr5_2:3265877-3265896 None:intergenic 25.0%
!! CATTTTATCATGTGAAGATT+TGG + chr5_2:3265875-3265894 Msa0749760:intron 25.0%
!!! CTGATAAGCATTTTGATTTT+AGG + chr5_2:3265906-3265925 Msa0749760:intron 25.0%
! AATGCAATAGAGAATTTGAA+TGG + chr5_2:3265970-3265989 Msa0749760:CDS 25.0%
!! ACAAACCATTTATGTTGATT+GGG + chr5_2:3266008-3266027 Msa0749760:CDS 25.0%
! TGTGATAACAAATCATAATG+TGG - chr5_2:3266257-3266276 None:intergenic 25.0%
! AAATTCCATAGTAAGAAAAG+TGG - chr5_2:3266391-3266410 None:intergenic 25.0%
!! GTTTTTCCACGTTTAAAAAT+TGG + chr5_2:3266983-3267002 Msa0749760:intron 25.0%
!! TATGTTCCAATTTTTAAACG+TGG - chr5_2:3266992-3267011 None:intergenic 25.0%
!! GAATGTTTTCATAGTTACTT+TGG - chr5_2:3267030-3267049 None:intergenic 25.0%
! CAAAAAATAAGCAATTGGAA+AGG + chr5_2:3267199-3267218 Msa0749760:intron 25.0%
! TGGATTGAAAAATGAAGATA+TGG + chr5_2:3267557-3267576 Msa0749760:intron 25.0%
! AATCCATACATACAATGAAA+CGG - chr5_2:3267632-3267651 None:intergenic 25.0%
! TAGTTTAGCATTTGAATGTT+TGG + chr5_2:3267792-3267811 Msa0749760:intron 25.0%
! TCAAAGTCTATTATGGTTTA+TGG + chr5_2:3268051-3268070 Msa0749760:three_prime_UTR 25.0%
! TTTTTGTAGCTATTGAAGGA+TGG + chr5_2:3263602-3263621 Msa0749760:intron 30.0%
!!! GATAGAAAGTGTTTTGAAGT+AGG + chr5_2:3263873-3263892 Msa0749760:intron 30.0%
AAGTAGGAAATGTATATGGA+CGG + chr5_2:3263889-3263908 Msa0749760:intron 30.0%
! TAATCTAAGGGTATGATTGT+AGG + chr5_2:3263919-3263938 Msa0749760:intron 30.0%
! AATCTAAGGGTATGATTGTA+GGG + chr5_2:3263920-3263939 Msa0749760:intron 30.0%
ATTAATCTATGTTGTTGGGA+GGG - chr5_2:3264112-3264131 None:intergenic 30.0%
TATTAATCTATGTTGTTGGG+AGG - chr5_2:3264113-3264132 None:intergenic 30.0%
AGAACTCAAAATTGTATTCG+AGG - chr5_2:3264219-3264238 None:intergenic 30.0%
AACAAAACCCTCATAATTTG+GGG - chr5_2:3264242-3264261 None:intergenic 30.0%
TGGATGAAATAGAAGACATT+GGG + chr5_2:3264465-3264484 Msa0749760:intron 30.0%
AATACAAAATCTCCCTCATT+TGG + chr5_2:3264521-3264540 Msa0749760:intron 30.0%
ATACAAAATCTCCCTCATTT+GGG + chr5_2:3264522-3264541 Msa0749760:intron 30.0%
TTGGGAGTTTGAGAAATATA+TGG - chr5_2:3264648-3264667 None:intergenic 30.0%
AAGCCTAAGTGATTGATTAA+TGG + chr5_2:3264671-3264690 Msa0749760:intron 30.0%
! AAAATTTGATAACCATGCTC+CGG - chr5_2:3264766-3264785 None:intergenic 30.0%
CGATTCTCATTTCATTCTAA+TGG - chr5_2:3265014-3265033 None:intergenic 30.0%
!! TGAGAATCGTTTTAGTGAAT+TGG + chr5_2:3265025-3265044 Msa0749760:intron 30.0%
!! GAGAATCGTTTTAGTGAATT+GGG + chr5_2:3265026-3265045 Msa0749760:intron 30.0%
TGAGATGATAACTTCAGTTA+AGG - chr5_2:3265262-3265281 None:intergenic 30.0%
CACAAACCATTTATGTTGAT+TGG + chr5_2:3266007-3266026 Msa0749760:CDS 30.0%
! AACAAAGTTCCATGAAGTTT+TGG + chr5_2:3266137-3266156 Msa0749760:intron 30.0%
CAATGACTTGACTATAAACA+TGG - chr5_2:3266283-3266302 None:intergenic 30.0%
CATGTTTATAGTCAAGTCAT+TGG + chr5_2:3266281-3266300 Msa0749760:intron 30.0%
TATTTGCCAATAGTGTTTGT+TGG + chr5_2:3266324-3266343 Msa0749760:intron 30.0%
AGAAAAGTGGATGAGATAAA+AGG - chr5_2:3266378-3266397 None:intergenic 30.0%
! ATTCAACTACATAACTTGTG+TGG + chr5_2:3266616-3266635 Msa0749760:intron 30.0%
! GTTTTACAAACTTTCAAGAG+TGG - chr5_2:3266679-3266698 None:intergenic 30.0%
AACCGTTGGATCAAAATATA+CGG + chr5_2:3266791-3266810 Msa0749760:intron 30.0%
AGATTAGAGTCCAATTAGAA+AGG + chr5_2:3266817-3266836 Msa0749760:intron 30.0%
TTCTGATTATTTAGATTCGC+AGG - chr5_2:3266922-3266941 None:intergenic 30.0%
GATGATTGATGTAAAGTTTG+AGG + chr5_2:3267137-3267156 Msa0749760:intron 30.0%
!! GTGTTCGGATTTAAGTTTTA+TGG - chr5_2:3267254-3267273 None:intergenic 30.0%
GAACCATGGATCATAATATA+CGG - chr5_2:3267420-3267439 None:intergenic 30.0%
AGAGGATATAATATGAACCA+TGG - chr5_2:3267434-3267453 None:intergenic 30.0%
ATAATTCTCTTCTTTGTGGA+TGG + chr5_2:3267537-3267556 Msa0749760:intron 30.0%
ATCCATACATACAATGAAAC+GGG - chr5_2:3267631-3267650 None:intergenic 30.0%
TTGTGAGTTTGTCAAAATCA+CGG - chr5_2:3267688-3267707 None:intergenic 30.0%
TTAGCATTGCTTAAACACAA+TGG - chr5_2:3267733-3267752 None:intergenic 30.0%
AAAAGTTTATAAGGGGAAGA+AGG - chr5_2:3267770-3267789 None:intergenic 30.0%
! AAAATACATATCGGTTGTTG+AGG + chr5_2:3267992-3268011 Msa0749760:three_prime_UTR 30.0%
TATGTAATGACATTGTGTTG+AGG + chr5_2:3268131-3268150 Msa0749760:three_prime_UTR 30.0%
! GTTTCTTTTTCTCTCAATAG+AGG + chr5_2:3268221-3268240 Msa0749760:three_prime_UTR 30.0%
CAATACAATACAATACATGG+TGG - chr5_2:3268275-3268294 None:intergenic 30.0%
!!! ACCTTTGGTTTTTTTGGGAA+CGG - chr5_2:3263398-3263417 None:intergenic 35.0%
!!! GCTGTTTTTGTAGCTATTGA+AGG + chr5_2:3263598-3263617 Msa0749760:intron 35.0%
!! GATGATTTGCAGAATGCTTT+TGG + chr5_2:3263664-3263683 Msa0749760:CDS 35.0%
! CAGAATGCTTTTGGTGAATA+TGG + chr5_2:3263673-3263692 Msa0749760:CDS 35.0%
ACTAGTCAATCTATACGAGT+GGG - chr5_2:3263824-3263843 None:intergenic 35.0%
AACTAGTCAATCTATACGAG+TGG - chr5_2:3263825-3263844 None:intergenic 35.0%
AGTAGGAAATGTATATGGAC+GGG + chr5_2:3263890-3263909 Msa0749760:intron 35.0%
AAATGTATATGGACGGGTAA+TGG + chr5_2:3263896-3263915 Msa0749760:intron 35.0%
!!! TATGATTGTAGGGTTTTGGA+GGG + chr5_2:3263930-3263949 Msa0749760:intron 35.0%
TTAATCTATGTTGTTGGGAG+GGG - chr5_2:3264111-3264130 None:intergenic 35.0%
CTCAAAATTGTATTCGAGGA+GGG - chr5_2:3264215-3264234 None:intergenic 35.0%
ACTCAAAATTGTATTCGAGG+AGG - chr5_2:3264216-3264235 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG - chr5_2:3264445-3264464 None:intergenic 35.0%
! TCTTTGTTTGGGAGTTTAGA+GGG - chr5_2:3264370-3264389 None:intergenic 35.0%
! CTAAGGCTTTGTCTTTGTTT+GGG - chr5_2:3264381-3264400 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG + chr5_2:3264445-3264464 Msa0749760:intron 35.0%
GTGGATGAAATAGAAGACAT+TGG + chr5_2:3264464-3264483 Msa0749760:intron 35.0%
ATGAAATAGAAGACATTGGG+AGG + chr5_2:3264468-3264487 Msa0749760:intron 35.0%
TGAAATAGAAGACATTGGGA+GGG + chr5_2:3264469-3264488 Msa0749760:intron 35.0%
TACAAAATCTCCCTCATTTG+GGG + chr5_2:3264523-3264542 Msa0749760:intron 35.0%
!! CAATCACTTAGGCTTTGTTT+GGG - chr5_2:3264666-3264685 None:intergenic 35.0%
!! TCAATCACTTAGGCTTTGTT+TGG - chr5_2:3264667-3264686 None:intergenic 35.0%
! AATATCAAGGTACCTTTCCT+CGG - chr5_2:3264743-3264762 None:intergenic 35.0%
! GAATTATAGCCAGCTTTTGT+CGG - chr5_2:3264972-3264991 None:intergenic 35.0%
TAGTGAATTGGGATTCAAGA+TGG + chr5_2:3265037-3265056 Msa0749760:intron 35.0%
AGTGAATTGGGATTCAAGAT+GGG + chr5_2:3265038-3265057 Msa0749760:intron 35.0%
ACAATGATACACACTAACTG+AGG + chr5_2:3265078-3265097 Msa0749760:intron 35.0%
ACACTAACTGAGGTTATTGA+TGG + chr5_2:3265088-3265107 Msa0749760:intron 35.0%
CACTAACTGAGGTTATTGAT+GGG + chr5_2:3265089-3265108 Msa0749760:intron 35.0%
AAACTCCACATCATGGTTAT+CGG - chr5_2:3265163-3265182 None:intergenic 35.0%
! CATATCTTTTCACCGTTAGT+TGG + chr5_2:3265280-3265299 Msa0749760:intron 35.0%
GGAAAGTTAAGTCCAACTAA+CGG - chr5_2:3265295-3265314 None:intergenic 35.0%
GAGATGGCAGAAAATTTACT+TGG - chr5_2:3265740-3265759 None:intergenic 35.0%
TATGAACATAGAAACGGAGA+TGG - chr5_2:3265756-3265775 None:intergenic 35.0%
GAAAGCCCAATCAACATAAA+TGG - chr5_2:3266016-3266035 None:intergenic 35.0%
! CTTCTAACTGACTCATTGAT+AGG - chr5_2:3266048-3266067 None:intergenic 35.0%
ATGAGTCAGTTAGAAGAAAC+AGG + chr5_2:3266052-3266071 Msa0749760:CDS 35.0%
!!! AGTTCCATGAAGTTTTGGTT+TGG + chr5_2:3266142-3266161 Msa0749760:intron 35.0%
!!! GTTCCATGAAGTTTTGGTTT+GGG + chr5_2:3266143-3266162 Msa0749760:intron 35.0%
AAACCCAAACCAAAACTTCA+TGG - chr5_2:3266149-3266168 None:intergenic 35.0%
!! TGAGTCTTATTCCACAAAGT+GGG + chr5_2:3266212-3266231 Msa0749760:intron 35.0%
!! CTCATCCACTTTTCTTACTA+TGG + chr5_2:3266383-3266402 Msa0749760:intron 35.0%
AAATCTCGACTTAGATGGTT+TGG - chr5_2:3266435-3266454 None:intergenic 35.0%
TGATGAAATCTCGACTTAGA+TGG - chr5_2:3266440-3266459 None:intergenic 35.0%
TGATAGCATTAGAGAGAGTT+GGG - chr5_2:3266484-3266503 None:intergenic 35.0%
ATGATAGCATTAGAGAGAGT+TGG - chr5_2:3266485-3266504 None:intergenic 35.0%
ATGTGATGAGAATTGAGTGT+TGG - chr5_2:3266542-3266561 None:intergenic 35.0%
!! CATCTTCACTTAGTTTGTGT+TGG + chr5_2:3266559-3266578 Msa0749760:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG + chr5_2:3266758-3266777 Msa0749760:intron 35.0%
GAGGATATAATATGAACCGT+TGG + chr5_2:3266777-3266796 Msa0749760:intron 35.0%
!!! GACCGTATATTTTGATCCAA+CGG - chr5_2:3266796-3266815 None:intergenic 35.0%
ACTTCATAGTCAGAAGAGAA+GGG - chr5_2:3266889-3266908 None:intergenic 35.0%
TAAACGTGGAAAAACATACG+TGG - chr5_2:3266978-3266997 None:intergenic 35.0%
AAATAAGCAATTGGAAAGGG+TGG + chr5_2:3267203-3267222 Msa0749760:intron 35.0%
AATAAGCAATTGGAAAGGGT+GGG + chr5_2:3267204-3267223 Msa0749760:intron 35.0%
GTGTCATATATATGAAGCAG+TGG + chr5_2:3267228-3267247 Msa0749760:intron 35.0%
!! CAATTTTGTGAATCGGTGTT+CGG - chr5_2:3267269-3267288 None:intergenic 35.0%
! CCTTTCTTATTTCTTCTTCC+TGG - chr5_2:3267333-3267352 None:intergenic 35.0%
CCAGGAAGAAGAAATAAGAA+AGG + chr5_2:3267330-3267349 Msa0749760:intron 35.0%
AGAAATAAGAAAGGCCAAAG+AGG + chr5_2:3267339-3267358 Msa0749760:intron 35.0%
AGATTAGAGTCCAGTTAGAA+AGG - chr5_2:3267394-3267413 None:intergenic 35.0%
TGACCGTATATTATGATCCA+TGG + chr5_2:3267414-3267433 Msa0749760:intron 35.0%
TGTTATAATGAGAGGATGAG+AGG - chr5_2:3266758-3266777 None:intergenic 35.0%
TCCATACATACAATGAAACG+GGG - chr5_2:3267630-3267649 None:intergenic 35.0%
CTTAAACACAATGGCATGTT+TGG - chr5_2:3267724-3267743 None:intergenic 35.0%
TATACATGATGTCAGTTGTG+TGG + chr5_2:3267892-3267911 Msa0749760:three_prime_UTR 35.0%
TTGTGTGGAACTTAAATGAG+CGG + chr5_2:3267907-3267926 Msa0749760:three_prime_UTR 35.0%
GATTTCTATTTGTCCAGTTG+TGG + chr5_2:3267933-3267952 Msa0749760:three_prime_UTR 35.0%
! CCGATATGTATTTTGTCTGA+CGG - chr5_2:3267986-3268005 None:intergenic 35.0%
CCGTCAGACAAAATACATAT+CGG + chr5_2:3267983-3268002 Msa0749760:three_prime_UTR 35.0%
! GAGGAAGATAGTATCTCTTT+TGG + chr5_2:3268150-3268169 Msa0749760:three_prime_UTR 35.0%
ATGGTGGCAAAGAAAAAGAT+GGG - chr5_2:3268259-3268278 None:intergenic 35.0%
!!! TTTTTTGGGAACGGAAGTGA+TGG - chr5_2:3263389-3263408 None:intergenic 40.0%
TCCGTTCCCAAAAAAACCAA+AGG + chr5_2:3263394-3263413 Msa0749760:intron 40.0%
AGAGTTACGGTTAGAGGAAT+CGG - chr5_2:3263440-3263459 None:intergenic 40.0%
! TACAAACATCTTTGAGGACC+AGG - chr5_2:3263508-3263527 None:intergenic 40.0%
TGGGGATACAAACATCTTTG+AGG - chr5_2:3263514-3263533 None:intergenic 40.0%
!!! GGATGGATTATTTTGGTGAC+TGG + chr5_2:3263619-3263638 Msa0749760:CDS 40.0%
GCACCTTAACAAAACCAGTA+CGG - chr5_2:3263732-3263751 None:intergenic 40.0%
! GACGGGTAATGGTAATCTAA+GGG + chr5_2:3263907-3263926 Msa0749760:intron 40.0%
! AGGGTATGATTGTAGGGTTT+TGG + chr5_2:3263926-3263945 Msa0749760:intron 40.0%
!! GTATGATTGTAGGGTTTTGG+AGG + chr5_2:3263929-3263948 Msa0749760:intron 40.0%
!!! ATGATTGTAGGGTTTTGGAG+GGG + chr5_2:3263931-3263950 Msa0749760:intron 40.0%
!!! TATTCGAGGAGGGTTTTGAA+GGG - chr5_2:3264205-3264224 None:intergenic 40.0%
TGAGTTCTCCCCAAATTATG+AGG + chr5_2:3264231-3264250 Msa0749760:intron 40.0%
GAGTTCTCCCCAAATTATGA+GGG + chr5_2:3264232-3264251 Msa0749760:intron 40.0%
GAAATAGAGGAGTTTGAGAG+GGG - chr5_2:3264296-3264315 None:intergenic 40.0%
GGAAATAGAGGAGTTTGAGA+GGG - chr5_2:3264297-3264316 None:intergenic 40.0%
AGGAAATAGAGGAGTTTGAG+AGG - chr5_2:3264298-3264317 None:intergenic 40.0%
! GTCTTTGTTTGGGAGTTTAG+AGG - chr5_2:3264371-3264390 None:intergenic 40.0%
! CCTAAGGCTTTGTCTTTGTT+TGG - chr5_2:3264382-3264401 None:intergenic 40.0%
CCAAACAAAGACAAAGCCTT+AGG + chr5_2:3264379-3264398 Msa0749760:intron 40.0%
!! ACAAAGCCTTAGGCTTTGTT+TGG + chr5_2:3264389-3264408 Msa0749760:intron 40.0%
!! CAAAGCCTTAGGCTTTGTTT+GGG + chr5_2:3264390-3264409 Msa0749760:intron 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr5_2:3264658-3264677 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG + chr5_2:3264401-3264420 Msa0749760:intron 40.0%
GAAATAGAAGACATTGGGAG+GGG + chr5_2:3264470-3264489 Msa0749760:intron 40.0%
ACAAAATCTCCCTCATTTGG+GGG + chr5_2:3264524-3264543 Msa0749760:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr5_2:3264536-3264555 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr5_2:3264537-3264556 None:intergenic 40.0%
! ATATCAAGGTACCTTTCCTC+GGG - chr5_2:3264742-3264761 None:intergenic 40.0%
!! GGAAAGGTACCTTGATATTC+CGG + chr5_2:3264744-3264763 Msa0749760:intron 40.0%
TCATGAATCAAATGGCAAGC+TGG + chr5_2:3264932-3264951 Msa0749760:intron 40.0%
AGATACCGATAACCATGATG+TGG + chr5_2:3265155-3265174 Msa0749760:intron 40.0%
CTCAATCAAACTCCACATCA+TGG - chr5_2:3265170-3265189 None:intergenic 40.0%
TGATGTGGAGTTTGATTGAG+AGG + chr5_2:3265170-3265189 Msa0749760:intron 40.0%
ATTGAGAGGTAGGTAAAGTG+AGG + chr5_2:3265184-3265203 Msa0749760:intron 40.0%
TCCATTTCATGTCTCAGTCA+TGG + chr5_2:3265312-3265331 Msa0749760:intron 40.0%
! TTGACCTCAAGCTGTTACTT+TGG + chr5_2:3265368-3265387 Msa0749760:intron 40.0%
!! TGACCTCAAGCTGTTACTTT+GGG + chr5_2:3265369-3265388 Msa0749760:intron 40.0%
! CACACAGTTACTTGTTAGGA+AGG - chr5_2:3265553-3265572 None:intergenic 40.0%
CCTACACACAGTTACTTGTT+AGG - chr5_2:3265557-3265576 None:intergenic 40.0%
CCTAACAAGTAACTGTGTGT+AGG + chr5_2:3265554-3265573 Msa0749760:intron 40.0%
CAGTTTCAGAAACTGCAGAT+TGG + chr5_2:3265799-3265818 Msa0749760:intron 40.0%
GACTCAGTAGTTGCTGTAAT+AGG - chr5_2:3266198-3266217 None:intergenic 40.0%
!! CTGAGTCTTATTCCACAAAG+TGG + chr5_2:3266211-3266230 Msa0749760:intron 40.0%
!! GAGTCTTATTCCACAAAGTG+GGG + chr5_2:3266213-3266232 Msa0749760:intron 40.0%
TTCCATTGCCTTTCGCAATT+CGG + chr5_2:3266349-3266368 Msa0749760:intron 40.0%
! TTAGATGGTTTGGACATGTG+TGG - chr5_2:3266425-3266444 None:intergenic 40.0%
ACGTGTGGAAAGACTAGAAA+GGG - chr5_2:3266519-3266538 None:intergenic 40.0%
!! TTCTTCGTCGTTTTCTACGA+TGG + chr5_2:3266584-3266603 Msa0749760:intron 40.0%
TTCAAGAGTGGAGTATGTGT+TGG - chr5_2:3266667-3266686 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG + chr5_2:3266733-3266752 Msa0749760:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG + chr5_2:3266750-3266769 Msa0749760:intron 40.0%
GTGTGTTCTGCCTTTCTAAT+TGG - chr5_2:3266830-3266849 None:intergenic 40.0%
GACTTCATAGTCAGAAGAGA+AGG - chr5_2:3266890-3266909 None:intergenic 40.0%
!! AAAACATACGTGGCTTGGTT+GGG - chr5_2:3266968-3266987 None:intergenic 40.0%
!! AAAAACATACGTGGCTTGGT+TGG - chr5_2:3266969-3266988 None:intergenic 40.0%
CATATATGCTTGTGAGAGAG+AGG + chr5_2:3267299-3267318 Msa0749760:intron 40.0%
!! GAGAGGAGTGTTATAATGAG+AGG - chr5_2:3266750-3266769 None:intergenic 40.0%
! TAGAGGGTGTATCAAATGAG+AGG - chr5_2:3266733-3266752 None:intergenic 40.0%
AATGAAACGGGGTTGAAAGA+TGG - chr5_2:3267619-3267638 None:intergenic 40.0%
ACCCCGTTTCATTGTATGTA+TGG + chr5_2:3267626-3267645 Msa0749760:intron 40.0%
CAATGGCATGTTTGGTAGAT+TGG - chr5_2:3267716-3267735 None:intergenic 40.0%
TTTCAATATCTCCTCCTAGG+AGG - chr5_2:3267858-3267877 None:intergenic 40.0%
TCCTAGGAGGAGATATTGAA+AGG + chr5_2:3267857-3267876 Msa0749760:exon 40.0%
CCTAGGAGGAGATATTGAAA+GGG + chr5_2:3267858-3267877 Msa0749760:exon 40.0%
!! TAGGAAAAAGCATCCACAAC+TGG - chr5_2:3267949-3267968 None:intergenic 40.0%
CATGGTGGCAAAGAAAAAGA+TGG - chr5_2:3268260-3268279 None:intergenic 40.0%
GAAATCCAAAGCTTCTCCGT+CGG - chr5_2:3263283-3263302 None:intergenic 45.0%
TCCATCAAGTCATCTTCCTC+TGG - chr5_2:3263309-3263328 None:intergenic 45.0%
! GATGACTTGATGGACGAAGA+AGG + chr5_2:3263315-3263334 Msa0749760:CDS 45.0%
! GATTTGAGTTTGGGATGTGG+AGG - chr5_2:3263363-3263382 None:intergenic 45.0%
!! TGATGGCGGGATTTGAGTTT+GGG - chr5_2:3263372-3263391 None:intergenic 45.0%
!!! CCGCGACCTTTGGTTTTTTT+GGG - chr5_2:3263403-3263422 None:intergenic 45.0%
CCCAAAAAAACCAAAGGTCG+CGG + chr5_2:3263400-3263419 Msa0749760:intron 45.0%
!!! ACCGCGACCTTTGGTTTTTT+TGG - chr5_2:3263404-3263423 None:intergenic 45.0%
TAGAGGAATCGGAATCCTGA+CGG - chr5_2:3263429-3263448 None:intergenic 45.0%
AATCAGCGAGACGAGAGTTA+CGG - chr5_2:3263453-3263472 None:intergenic 45.0%
!! AGCAGTGAGAGTATCGAAAC+CGG - chr5_2:3263476-3263495 None:intergenic 45.0%
TTTCGATACTCTCACTGCTG+AGG + chr5_2:3263477-3263496 Msa0749760:CDS 45.0%
TTCGATACTCTCACTGCTGA+GGG + chr5_2:3263478-3263497 Msa0749760:CDS 45.0%
! TTTGGTGACTGGTGTACATG+AGG + chr5_2:3263630-3263649 Msa0749760:CDS 45.0%
TTGAATCTTGATCGCCGTAC+TGG + chr5_2:3263715-3263734 Msa0749760:CDS 45.0%
!!! TCGCCGTACTGGTTTTGTTA+AGG + chr5_2:3263726-3263745 Msa0749760:CDS 45.0%
! GGACGGGTAATGGTAATCTA+AGG + chr5_2:3263906-3263925 Msa0749760:intron 45.0%
! TATGTTGTTGGGAGGGGTTT+TGG - chr5_2:3264105-3264124 None:intergenic 45.0%
!!! GGGTTTTGAAGGGATTTGGA+AGG - chr5_2:3264195-3264214 None:intergenic 45.0%
!!! AGGAGGGTTTTGAAGGGATT+TGG - chr5_2:3264199-3264218 None:intergenic 45.0%
!! GTATTCGAGGAGGGTTTTGA+AGG - chr5_2:3264206-3264225 None:intergenic 45.0%
AAAAAGGAAGGAGCAAGTGG+AGG - chr5_2:3264448-3264467 None:intergenic 45.0%
TTTGGGAGTTTAGAGGGCAA+GGG - chr5_2:3264364-3264383 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG + chr5_2:3264400-3264419 Msa0749760:intron 45.0%
GGAGTTTAGAGGGAAGTGAA+GGG + chr5_2:3264411-3264430 Msa0749760:intron 45.0%
TACCTTGATATTCCGGAGCA+TGG + chr5_2:3264751-3264770 Msa0749760:intron 45.0%
AACCATGCTCCGGAATATCA+AGG - chr5_2:3264756-3264775 None:intergenic 45.0%
CAATGTTGACCGACAAAAGC+TGG + chr5_2:3264960-3264979 Msa0749760:intron 45.0%
GTGGAGTTTGATTGAGAGGT+AGG + chr5_2:3265174-3265193 Msa0749760:intron 45.0%
TCCCATGCTGGAACAATCTT+CGG - chr5_2:3265210-3265229 None:intergenic 45.0%
TTCCAGCATGGGATTGAACT+TGG + chr5_2:3265217-3265236 Msa0749760:intron 45.0%
TCCAGCATGGGATTGAACTT+GGG + chr5_2:3265218-3265237 Msa0749760:intron 45.0%
GCCATGACTGAGACATGAAA+TGG - chr5_2:3265316-3265335 None:intergenic 45.0%
!! GACCTCAAGCTGTTACTTTG+GGG + chr5_2:3265370-3265389 Msa0749760:intron 45.0%
AACCCCAAAGTAACAGCTTG+AGG - chr5_2:3265375-3265394 None:intergenic 45.0%
!! CTGTTACTTTGGGGTTCAGA+TGG + chr5_2:3265379-3265398 Msa0749760:intron 45.0%
TGAGATCAAAGCAGCGAAAG+TGG - chr5_2:3265637-3265656 None:intergenic 45.0%
GATTGAATATGAGCGCTCTG+AGG + chr5_2:3265939-3265958 Msa0749760:CDS 45.0%
CTTATTCCACAAAGTGGGGT+TGG + chr5_2:3266217-3266236 Msa0749760:intron 45.0%
GGAAGGCCAACAAACACTAT+TGG - chr5_2:3266333-3266352 None:intergenic 45.0%
GAATTGCGAAAGGCAATGGA+AGG - chr5_2:3266350-3266369 None:intergenic 45.0%
AACCGAATTGCGAAAGGCAA+TGG - chr5_2:3266354-3266373 None:intergenic 45.0%
AAAGGCAACCGAATTGCGAA+AGG - chr5_2:3266360-3266379 None:intergenic 45.0%
CATTAGAGAGAGTTGGGTAG+AGG - chr5_2:3266478-3266497 None:intergenic 45.0%
GTGGAAAGACTAGAAAGGGT+AGG - chr5_2:3266515-3266534 None:intergenic 45.0%
GACGTGTGGAAAGACTAGAA+AGG - chr5_2:3266520-3266539 None:intergenic 45.0%
!! AGAATTGAGTGTTGGACGTG+TGG - chr5_2:3266534-3266553 None:intergenic 45.0%
GTGGAAAAACATACGTGGCT+TGG - chr5_2:3266973-3266992 None:intergenic 45.0%
TATGCTTGTGAGAGAGAGGA+AGG + chr5_2:3267303-3267322 Msa0749760:intron 45.0%
AGAGTCCAGTTAGAAAGGCA+CGG - chr5_2:3267389-3267408 None:intergenic 45.0%
! TGACATTTTGCAGACCTCAG+CGG + chr5_2:3267820-3267839 Msa0749760:intron 45.0%
CCCTTTCAATATCTCCTCCT+AGG - chr5_2:3267861-3267880 None:intergenic 45.0%
GACGGAAGCTGCATAAGTAT+AGG - chr5_2:3267968-3267987 None:intergenic 45.0%
GATTGCGTCTTGTGTGTGAT+GGG + chr5_2:3268172-3268191 Msa0749760:three_prime_UTR 45.0%
GTGGCAAAGAAAAAGATGGG+AGG - chr5_2:3268256-3268275 None:intergenic 45.0%
!!! TGTATATAAATTTTATAAAA+TGG + chr5_2:3265420-3265439 Msa0749760:intron 5.0%
!! ATATTTAAAAAAATATTTAG+AGG - chr5_2:3266307-3266326 None:intergenic 5.0%
!! TTATATATATATATATATAG+AGG + chr5_2:3266716-3266735 Msa0749760:intron 5.0%
!! TATATATATATATATATAGA+GGG + chr5_2:3266717-3266736 Msa0749760:intron 5.0%
!! TATATATATATATATATAGA+GGG - chr5_2:3266717-3266736 None:intergenic 5.0%
!! ATATATATATATATATATAG+AGG - chr5_2:3267494-3267513 None:intergenic 5.0%
!! AGCTTTGGATTTCGAGCCAG+AGG + chr5_2:3263290-3263309 Msa0749760:CDS 50.0%
GCCAGAGGAAGATGACTTGA+TGG + chr5_2:3263305-3263324 Msa0749760:CDS 50.0%
! CGGGATTTGAGTTTGGGATG+TGG - chr5_2:3263366-3263385 None:intergenic 50.0%
!! GTGATGGCGGGATTTGAGTT+TGG - chr5_2:3263373-3263392 None:intergenic 50.0%
TTTGGGAACGGAAGTGATGG+CGG - chr5_2:3263386-3263405 None:intergenic 50.0%
GAGACGAGAGTTACGGTTAG+AGG - chr5_2:3263446-3263465 None:intergenic 50.0%
!! AACTCTCGTCTCGCTGATTC+CGG + chr5_2:3263454-3263473 Msa0749760:CDS 50.0%
!!! ATTGTAGGGTTTTGGAGGGG+AGG + chr5_2:3263934-3263953 Msa0749760:intron 50.0%
!!! TTGTAGGGTTTTGGAGGGGA+GGG + chr5_2:3263935-3263954 Msa0749760:intron 50.0%
TAGAGGAGTTTGAGAGGGGA+GGG - chr5_2:3264292-3264311 None:intergenic 50.0%
ATAGAGGAGTTTGAGAGGGG+AGG - chr5_2:3264293-3264312 None:intergenic 50.0%
GGAGCAAGTGGAGGAAATAG+AGG - chr5_2:3264309-3264328 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGCA+AGG - chr5_2:3264365-3264384 None:intergenic 50.0%
GGGAGTTTAGAGGGAAGTGA+AGG + chr5_2:3264410-3264429 Msa0749760:intron 50.0%
ATAGAAGACATTGGGAGGGG+AGG + chr5_2:3264473-3264492 Msa0749760:intron 50.0%
TAGAAGACATTGGGAGGGGA+GGG + chr5_2:3264474-3264493 Msa0749760:intron 50.0%
!! GTTAACCTTCTGGTTTCCCG+AGG + chr5_2:3264723-3264742 Msa0749760:intron 50.0%
GCCGAAGATTGTTCCAGCAT+GGG + chr5_2:3265206-3265225 Msa0749760:intron 50.0%
ACCCAAGTTCAATCCCATGC+TGG - chr5_2:3265222-3265241 None:intergenic 50.0%
GTTGATTGGGCTTTCAGCAG+TGG + chr5_2:3266021-3266040 Msa0749760:CDS 50.0%
ATGTAGCCAACCCCACTTTG+TGG - chr5_2:3266226-3266245 None:intergenic 50.0%
!! ACAAAGTGGGGTTGGCTACA+TGG + chr5_2:3266225-3266244 Msa0749760:intron 50.0%
! GATGGTTTGGACATGTGTGG+AGG - chr5_2:3266422-3266441 None:intergenic 50.0%
GAGAGAGAGGAAGGAAATCC+AGG + chr5_2:3267312-3267331 Msa0749760:intron 50.0%
AGGAGCGACGCTGTTTGATT+AGG + chr5_2:3267359-3267378 Msa0749760:intron 50.0%
GGATTGCGTCTTGTGTGTGA+TGG + chr5_2:3268171-3268190 Msa0749760:three_prime_UTR 50.0%
ATCCAAAGCTTCTCCGTCGG+CGG - chr5_2:3263280-3263299 None:intergenic 55.0%
GGGATGTGGAGGAGAAGCTT+CGG - chr5_2:3263352-3263371 None:intergenic 55.0%
TTGGGAACGGAAGTGATGGC+GGG - chr5_2:3263385-3263404 None:intergenic 55.0%
GATACTCTCACTGCTGAGGG+TGG + chr5_2:3263481-3263500 Msa0749760:CDS 55.0%
!!! TGTAGGGTTTTGGAGGGGAG+GGG + chr5_2:3263936-3263955 Msa0749760:intron 55.0%
!! GTTGTTGGGAGGGGTTTTGG+AGG - chr5_2:3264102-3264121 None:intergenic 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG - chr5_2:3264284-3264303 None:intergenic 55.0%
GTTTGAGAGGGGAGGGCTTT+GGG - chr5_2:3264285-3264304 None:intergenic 55.0%
AGTTTGAGAGGGGAGGGCTT+TGG - chr5_2:3264286-3264305 None:intergenic 55.0%
! TAGAGGGCAAGGGAGGGTTT+TGG - chr5_2:3264354-3264373 None:intergenic 55.0%
GGAGTTTAGAGGGCAAGGGA+GGG - chr5_2:3264360-3264379 None:intergenic 55.0%
! ATTGGGAGGGGAGGGCTTTT+GGG + chr5_2:3264482-3264501 Msa0749760:intron 55.0%
CCTTTCCTCGGGAAACCAGA+AGG - chr5_2:3264731-3264750 None:intergenic 55.0%
!! CCTTCTGGTTTCCCGAGGAA+AGG + chr5_2:3264728-3264747 Msa0749760:intron 55.0%
GGCCGAAGATTGTTCCAGCA+TGG + chr5_2:3265205-3265224 Msa0749760:intron 55.0%
! ATACTGCAGGGAGTGCAGTG+AGG - chr5_2:3265446-3265465 None:intergenic 55.0%
!! ATGAGCGCTCTGAGGAAGCT+CGG + chr5_2:3265947-3265966 Msa0749760:CDS 55.0%
AAGGGCGAGCGAAGGAAGAT+GGG - chr5_2:3266871-3266890 None:intergenic 55.0%
!! CGTGGCTTGGTTGGGATTGT+TGG - chr5_2:3266960-3266979 None:intergenic 55.0%
CAAACAGCGTCGCTCCTCTT+TGG - chr5_2:3267356-3267375 None:intergenic 55.0%
GTGTGCCGTGCCTTTCTAAC+TGG + chr5_2:3267381-3267400 Msa0749760:intron 55.0%
CTGACGGAAACCGCGACCTT+TGG - chr5_2:3263413-3263432 None:intergenic 60.0%
CAAAGGTCGCGGTTTCCGTC+AGG + chr5_2:3263411-3263430 Msa0749760:intron 60.0%
!!! GTAGGGTTTTGGAGGGGAGG+GGG + chr5_2:3263937-3263956 Msa0749760:intron 60.0%
! TTGAGAGGGGAGGGCTTTGG+GGG - chr5_2:3264283-3264302 None:intergenic 60.0%
GGGAGTTTAGAGGGCAAGGG+AGG - chr5_2:3264361-3264380 None:intergenic 60.0%
! CATTGGGAGGGGAGGGCTTT+TGG + chr5_2:3264481-3264500 Msa0749760:intron 60.0%
! TTGGGAGGGGAGGGCTTTTG+GGG + chr5_2:3264483-3264502 Msa0749760:intron 60.0%
GAAGGGCGAGCGAAGGAAGA+TGG - chr5_2:3266872-3266891 None:intergenic 60.0%
CAGAAGAGAAGGGCGAGCGA+AGG - chr5_2:3266879-3266898 None:intergenic 60.0%
TCTCCTCCTAGGAGGACTCC+TGG - chr5_2:3267850-3267869 None:intergenic 60.0%
!! ATGCAAGGAAGCGCCGCCGA+CGG + chr5_2:3263264-3263283 Msa0749760:CDS 65.0%
CTCACTGCTGAGGGTGGTCC+TGG + chr5_2:3263487-3263506 Msa0749760:CDS 65.0%
!! TTTTGGAGGGGAGGGGGTGG+AGG + chr5_2:3263943-3263962 Msa0749760:intron 65.0%
!! TGAGAGGGGAGGGCTTTGGG+GGG - chr5_2:3264282-3264301 None:intergenic 65.0%
GCTCCAGGAGTCCTCCTAGG+AGG + chr5_2:3267844-3267863 Msa0749760:CDS 65.0%
CGCCGCCGACGGAGAAGCTT+TGG + chr5_2:3263275-3263294 Msa0749760:CDS 70.0%
!!! GGGTTTTGGAGGGGAGGGGG+TGG + chr5_2:3263940-3263959 Msa0749760:intron 70.0%
GGCGCTCCAGGAGTCCTCCT+AGG + chr5_2:3267841-3267860 Msa0749760:CDS 70.0%
GCAGACCTCAGCGGCGCTCC+AGG + chr5_2:3267829-3267848 Msa0749760:intron 75.0%
!! GGACTCCTGGAGCGCCGCTG+AGG - chr5_2:3267837-3267856 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3263264 3268335 3263264 ID=Msa0749760;Name=Msa0749760
chr5_2 mRNA 3263264 3268335 3263264 ID=Msa0749760-mRNA-1;Parent=Msa0749760;Name=Msa0749760-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.5|0.6|1|0.5|0.6|5|460|183
chr5_2 exon 3263264 3263396 3263264 ID=Msa0749760-mRNA-1:exon:1091;Parent=Msa0749760-mRNA-1
chr5_2 exon 3263416 3263508 3263416 ID=Msa0749760-mRNA-1:exon:1092;Parent=Msa0749760-mRNA-1
chr5_2 exon 3263611 3263747 3263611 ID=Msa0749760-mRNA-1:exon:1093;Parent=Msa0749760-mRNA-1
chr5_2 exon 3265928 3266073 3265928 ID=Msa0749760-mRNA-1:exon:1094;Parent=Msa0749760-mRNA-1
chr5_2 exon 3267833 3268335 3267833 ID=Msa0749760-mRNA-1:exon:1095;Parent=Msa0749760-mRNA-1
chr5_2 CDS 3263264 3263396 3263264 ID=Msa0749760-mRNA-1:cds;Parent=Msa0749760-mRNA-1
chr5_2 CDS 3263416 3263508 3263416 ID=Msa0749760-mRNA-1:cds;Parent=Msa0749760-mRNA-1
chr5_2 CDS 3263611 3263747 3263611 ID=Msa0749760-mRNA-1:cds;Parent=Msa0749760-mRNA-1
chr5_2 CDS 3265928 3266073 3265928 ID=Msa0749760-mRNA-1:cds;Parent=Msa0749760-mRNA-1
chr5_2 CDS 3267833 3267875 3267833 ID=Msa0749760-mRNA-1:cds;Parent=Msa0749760-mRNA-1
chr5_2 three_prime_UTR 3267876 3268335 3267876 ID=Msa0749760-mRNA-1:three_prime_utr;Parent=Msa0749760-mRNA-1
Gene Sequence

>Msa0749760

ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAAGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCACATCCCAAACTCAAATCCCGCCATCACTTCCGTCGCGGTTTCCGTCAGGATTCCGATTCCTCTAACCGTAACTCTCGTCTCGCTGATTCCGGTTTCGATACTCTCACTGCTGAGGGTGGTCCTGCTATTGAAGGATGGATTATTTTGGTGACTGGTGTACATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGTGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATCAATGAGTCAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA

Protein sequence

>Msa0749760

MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKLKSRHHFRRGFRQDSDSSNRNSRLADSGFDTLTAEGGPAIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINESVRRNRPQRRSRSPPRRRY*