AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211860 MtrunA17_Chr0c02g0489651 69.737 152 6 2 1 112 2 153 7.08e-58 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211860 AT1G79200.1 70.270 74 22 0 39 112 85 158 1.53e-34 117

Find 41 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTCGCACAGCCCATAAA+TGG 0.229703 2_1:-53494478 Msa0211860:CDS
TGTTTGTTTGGATTGAATTC+TGG 0.242449 2_1:-53501114 Msa0211860:five_prime_UTR
CATAAAGACACAAGGGAAAT+TGG 0.265284 2_1:+53494162 None:intergenic
AACAAAGGGTTTATAGAGAT+TGG 0.299376 2_1:+53494413 None:intergenic
AAGCAGAGCACTTGTTTGTT+TGG 0.309882 2_1:-53501126 Msa0211860:five_prime_UTR
ACATTTGTCTTACATGATAA+AGG 0.311477 2_1:-53494075 Msa0211860:three_prime_UTR
GGTAGCAAACTCATTATTCT+TGG 0.322349 2_1:+53494634 None:intergenic
TTTGTCAAAGCTTGGAATAA+AGG 0.336053 2_1:-53494539 Msa0211860:CDS
AAATAAATTACCTTCAGATT+CGG 0.387909 2_1:+53501041 None:intergenic
GACAAATGTGGCACACATAT+TGG 0.389618 2_1:+53494089 None:intergenic
GTTGTTAGTAACTGTTACAT+AGG 0.419631 2_1:+53494383 None:intergenic
TTGCAGAATTTGTCAAAGCT+TGG 0.436101 2_1:-53494547 Msa0211860:CDS
ATTGAATTCTGGATCGATCA+TGG 0.445411 2_1:-53501103 Msa0211860:exon
AGTGCTCTGCTTGAGGTTGA+AGG 0.455003 2_1:+53501137 None:intergenic
GAAGGTTCAAACAAGTGTTC+CGG 0.465575 2_1:+53501155 None:intergenic
GCCTTACCGATTCACACAAC+AGG 0.473615 2_1:+53494127 None:intergenic
GTATCAATCTTTAAGTGTGT+TGG 0.492368 2_1:-53494299 Msa0211860:three_prime_UTR
TTAAGTGTGTTGGTTGTTCG+CGG 0.503849 2_1:-53494289 Msa0211860:three_prime_UTR
AAACAAGTGTTCCGGTGTCT+AGG 0.509037 2_1:+53501163 None:intergenic
ATTCTTCTCTTCTTTCAGCC+AGG 0.510461 2_1:+53494613 None:intergenic
ACATAGGAAATCTAAACAAA+GGG 0.515262 2_1:+53494399 None:intergenic
CTTGAATCGAATTACTATGA+AGG 0.515517 2_1:-53494512 Msa0211860:CDS
CTAACAACTGACTTGAAACT+CGG 0.533030 2_1:-53494368 Msa0211860:three_prime_UTR
GGTTATGATTTGCAGAGTGA+CGG 0.539060 2_1:-53494194 Msa0211860:three_prime_UTR
TCCGGTGTCTAGGTGACTCT+AGG 0.548135 2_1:+53501173 None:intergenic
AGAATAATGAGTTTGCTACC+TGG 0.553697 2_1:-53494631 Msa0211860:CDS
TTGAATTCTGGATCGATCAT+GGG 0.559938 2_1:-53501102 Msa0211860:exon
ACAAACAAGTGCTCTGCTTG+AGG 0.561088 2_1:+53501130 None:intergenic
GCCTGTTGTGTGAATCGGTA+AGG 0.562152 2_1:-53494128 Msa0211860:three_prime_UTR
AGTGTGCCTGTTGTGTGAAT+CGG 0.571109 2_1:-53494133 Msa0211860:three_prime_UTR
TACATAGGAAATCTAAACAA+AGG 0.572493 2_1:+53494398 None:intergenic
TCTTCGCAATCCGAATCTGA+AGG 0.587888 2_1:-53501051 Msa0211860:intron
TTCCATTTATGGGCTGTGCG+AGG 0.589094 2_1:+53494476 None:intergenic
CTTGGCAAAATAGTCATCAC+CGG 0.597107 2_1:+53494652 None:intergenic
CTGATTCACATAAAGACACA+AGG 0.611622 2_1:+53494154 None:intergenic
CAGCAAAAGTGAAAGAAACA+TGG 0.625791 2_1:-53495378 Msa0211860:intron
GTCTAGGTGACTCTAGGTGT+AGG 0.627436 2_1:+53501179 None:intergenic
ATATTGGTTAATATGTGTAG+TGG 0.632221 2_1:+53494105 None:intergenic
ACCTAGAGTCACCTAGACAC+CGG 0.651741 2_1:-53501174 Msa0211860:five_prime_UTR
TTTATCATGTAAGACAAATG+TGG 0.660289 2_1:+53494077 None:intergenic
TGATTCACATAAAGACACAA+GGG 0.707752 2_1:+53494155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTCATAAAAAATAATTA+TGG + chr2_1:53494022-53494041 None:intergenic 10.0%
!! TTGAATAAAAGTAAATAATT+AGG - chr2_1:53494281-53494300 Msa0211860:three_prime_UTR 10.0%
!! GTAGTTTATATAAATATAAA+AGG + chr2_1:53494878-53494897 None:intergenic 10.0%
!! ATATTATAAAATAAAAATGG+AGG - chr2_1:53495115-53495134 Msa0211860:intron 10.0%
!! AAAAAATTAAAAACATTCAA+CGG - chr2_1:53497302-53497321 Msa0211860:intron 10.0%
!! ATATATATATAAAAGATTCA+AGG + chr2_1:53498237-53498256 None:intergenic 10.0%
!! AAATATATTTCCAAAATTAA+TGG - chr2_1:53498450-53498469 Msa0211860:intron 10.0%
!! AATATATTTCCAAAATTAAT+GGG - chr2_1:53498451-53498470 Msa0211860:intron 10.0%
!! TTGAAACAAAAAAAAAAAAA+TGG - chr2_1:53501024-53501043 Msa0211860:intron 10.0%
!! TGAAACAAAAAAAAAAAAAT+GGG - chr2_1:53501025-53501044 Msa0211860:intron 10.0%
!! CATGTTGTAAAAAAAAATAT+TGG - chr2_1:53494042-53494061 Msa0211860:three_prime_UTR 15.0%
!! TCAAAATAGTGAAATAAAAT+TGG - chr2_1:53494355-53494374 Msa0211860:three_prime_UTR 15.0%
!! CAAAATAGTGAAATAAAATT+GGG - chr2_1:53494356-53494375 Msa0211860:three_prime_UTR 15.0%
!! ATTTCTATAACAAAATCAAA+TGG - chr2_1:53494670-53494689 Msa0211860:CDS 15.0%
!! CAATTTCATCTATTAATATA+CGG + chr2_1:53495186-53495205 None:intergenic 15.0%
!!! GTAAAAAATTAATGTTGTTT+AGG - chr2_1:53496063-53496082 Msa0211860:intron 15.0%
!! AAGAAAAAAGTAACAAATAT+GGG + chr2_1:53496141-53496160 None:intergenic 15.0%
!!! TGAATTTCATTTTTGTTAAT+TGG - chr2_1:53497809-53497828 Msa0211860:intron 15.0%
!!! AATACCTATAAATCATTTTT+AGG - chr2_1:53498349-53498368 Msa0211860:intron 15.0%
!! TAAACCTAAAAATGATTTAT+AGG + chr2_1:53498356-53498375 None:intergenic 15.0%
!! ATATGTTCTGATAAAAAAAA+GGG + chr2_1:53499157-53499176 None:intergenic 15.0%
!! AAATCCAAACATATTAAAAA+AGG - chr2_1:53500426-53500445 Msa0211860:intron 15.0%
!! GAAACAAAAAAAAAAAAATG+GGG - chr2_1:53501026-53501045 Msa0211860:intron 15.0%
!! AAACAAAAAAAAAAAAATGG+GGG - chr2_1:53501027-53501046 Msa0211860:intron 15.0%
!! AAATAAATTACCTTCAGATT+CGG + chr2_1:53494211-53494230 None:intergenic 20.0%
!! CTAAATTCTATTGTTGATAT+TGG - chr2_1:53494392-53494411 Msa0211860:three_prime_UTR 20.0%
!!! GTCGATAATTATTTTAATAG+TGG + chr2_1:53494722-53494741 None:intergenic 20.0%
!! ATAGTGTACATAATTCAAAA+AGG + chr2_1:53494756-53494775 None:intergenic 20.0%
!! ATTGAAGAAAGAAAGAATAA+TGG + chr2_1:53494845-53494864 None:intergenic 20.0%
!! AAACATATTGTAATGTGTAA+CGG - chr2_1:53495472-53495491 Msa0211860:intron 20.0%
!!! AACATTAATTTTTTACCTTC+AGG + chr2_1:53496059-53496078 None:intergenic 20.0%
!! GAAGAAAAAAGTAACAAATA+TGG + chr2_1:53496142-53496161 None:intergenic 20.0%
!! AACTAATCAAATTTAGATCA+CGG + chr2_1:53496931-53496950 None:intergenic 20.0%
!! ATTGTCAAAGTCAAAAAAAA+AGG - chr2_1:53497468-53497487 Msa0211860:intron 20.0%
!! TGTATATAATTTGAAAACAG+TGG - chr2_1:53497501-53497520 Msa0211860:intron 20.0%
!! TTACCAATTTACAAATATCT+AGG + chr2_1:53497882-53497901 None:intergenic 20.0%
!! TATTCTAAACAAAAGAACAT+TGG - chr2_1:53498006-53498025 Msa0211860:intron 20.0%
!!! AAAATGATTGCTTAATGTTT+TGG + chr2_1:53498296-53498315 None:intergenic 20.0%
!!! CTACTTTTAAATACATTTTC+AGG + chr2_1:53498878-53498897 None:intergenic 20.0%
!! CTGAAAATGTATTTAAAAGT+AGG - chr2_1:53498876-53498895 Msa0211860:intron 20.0%
!! AAAATGTATTTAAAAGTAGG+AGG - chr2_1:53498879-53498898 Msa0211860:intron 20.0%
!! TACTATCTTAAAAATTGAGT+TGG + chr2_1:53498948-53498967 None:intergenic 20.0%
!! GATATGTTCTGATAAAAAAA+AGG + chr2_1:53499158-53499177 None:intergenic 20.0%
!! TCATAGAAATGAAGTTATAT+TGG - chr2_1:53499694-53499713 Msa0211860:intron 20.0%
!!! GCTGTTATATTTTCTTTTTA+CGG - chr2_1:53500003-53500022 Msa0211860:intron 20.0%
!!! AGGGAAATTTTTATTAAGTA+AGG - chr2_1:53500189-53500208 Msa0211860:intron 20.0%
!!! TTTTAATATGTTTGGATTTG+CGG + chr2_1:53500425-53500444 None:intergenic 20.0%
!!! TGTTCCTTTTTTAATATGTT+TGG + chr2_1:53500433-53500452 None:intergenic 20.0%
!!! CATATCTTTATTTCAAATGT+AGG - chr2_1:53500559-53500578 Msa0211860:intron 20.0%
!!! CTTTTTGATTTTCCATTTAT+GGG + chr2_1:53500786-53500805 None:intergenic 20.0%
!!! ACTTTTTGATTTTCCATTTA+TGG + chr2_1:53500787-53500806 None:intergenic 20.0%
!!! CTTTTTATACCTTTTCTTTT+TGG + chr2_1:53500988-53501007 None:intergenic 20.0%
! ATTCAATTACACAGAAAAAG+AGG + chr2_1:53494267-53494286 None:intergenic 25.0%
! ATAAATCTGATAAAGGTAGT+AGG - chr2_1:53494563-53494582 Msa0211860:CDS 25.0%
! TAAATTTGATTCAGACTCTT+AGG - chr2_1:53494606-53494625 Msa0211860:CDS 25.0%
!!! CAAAATCAAATGGTTTTAGT+AGG - chr2_1:53494680-53494699 Msa0211860:intron 25.0%
!! ATTCAAAAAGGATGGTATTT+TGG + chr2_1:53494744-53494763 None:intergenic 25.0%
! TGTACATAATTCAAAAAGGA+TGG + chr2_1:53494752-53494771 None:intergenic 25.0%
! AACATATTGTAATGTGTAAC+GGG - chr2_1:53495473-53495492 Msa0211860:intron 25.0%
! ATCAAGTATACATTCACAAT+CGG + chr2_1:53495686-53495705 None:intergenic 25.0%
! AATGTATACTTGATGAGTAT+TGG - chr2_1:53495692-53495711 Msa0211860:intron 25.0%
!! ATGTTGTTTAGGACTTAAAA+AGG - chr2_1:53496074-53496093 Msa0211860:intron 25.0%
! AAGAAAAACATCAAATTGGA+AGG + chr2_1:53496443-53496462 None:intergenic 25.0%
! AGTGAAGAAAAACATCAAAT+TGG + chr2_1:53496447-53496466 None:intergenic 25.0%
!! GTTTTTCTTCACTTTAAACA+AGG - chr2_1:53496454-53496473 Msa0211860:intron 25.0%
! TTTGTCCAAGTATATTACAA+TGG + chr2_1:53496533-53496552 None:intergenic 25.0%
! AGGACGATATCTATTTATAT+TGG - chr2_1:53496648-53496667 Msa0211860:intron 25.0%
! AACCAATCAAATTCAGATTA+CGG + chr2_1:53496782-53496801 None:intergenic 25.0%
! TTTAATAAAACAACCCACTT+GGG + chr2_1:53497138-53497157 None:intergenic 25.0%
! ATTTAATAAAACAACCCACT+TGG + chr2_1:53497139-53497158 None:intergenic 25.0%
! TCAAAGTCAAAAAAAAAGGA+TGG - chr2_1:53497472-53497491 Msa0211860:intron 25.0%
!!! AGTAGTTGGTAATGATTAAT+TGG - chr2_1:53497692-53497711 Msa0211860:intron 25.0%
! CAATTTACAAATATCTAGGT+CGG + chr2_1:53497878-53497897 None:intergenic 25.0%
! TTGAATGTAGAATTCATGTT+TGG - chr2_1:53498205-53498224 Msa0211860:intron 25.0%
! GATATTCTACATTATAGAAC+TGG + chr2_1:53498319-53498338 None:intergenic 25.0%
! TTCTATAATGTAGAATATCC+AGG - chr2_1:53498320-53498339 Msa0211860:intron 25.0%
!! ATACTTTGTCCCATTAATTT+TGG + chr2_1:53498463-53498482 None:intergenic 25.0%
! TTATGTTTGATTGGATATAC+TGG - chr2_1:53498635-53498654 Msa0211860:intron 25.0%
! TATGTTTGATTGGATATACT+GGG - chr2_1:53498636-53498655 Msa0211860:intron 25.0%
! ATACTGGGTATTATAGATTA+TGG - chr2_1:53498651-53498670 Msa0211860:intron 25.0%
! TACTGGGTATTATAGATTAT+GGG - chr2_1:53498652-53498671 Msa0211860:intron 25.0%
!! GTATCCTTCTTTTTACATAT+CGG - chr2_1:53498901-53498920 Msa0211860:intron 25.0%
! AAAACCGATATGTAAAAAGA+AGG + chr2_1:53498908-53498927 None:intergenic 25.0%
!!! TTTTTACATATCGGTTTTGT+AGG - chr2_1:53498910-53498929 Msa0211860:intron 25.0%
!! ATCAGAACATATCTAAGATA+AGG - chr2_1:53498967-53498986 Msa0211860:intron 25.0%
!! TCAGAACATATCTAAGATAA+GGG - chr2_1:53498968-53498987 Msa0211860:intron 25.0%
! TCCTAATTATAAACACATCT+CGG + chr2_1:53499292-53499311 None:intergenic 25.0%
!! ACAAAATCGATTTATAAGGT+GGG + chr2_1:53499361-53499380 None:intergenic 25.0%
!!! ACCTTATAAATCGATTTTGT+CGG - chr2_1:53499361-53499380 Msa0211860:intron 25.0%
!! ACCTTATAAGTCAATTTTGT+AGG - chr2_1:53499400-53499419 Msa0211860:intron 25.0%
!! GACATTTTATAATCATATGC+AGG - chr2_1:53499727-53499746 Msa0211860:intron 25.0%
! GCATTATTAGTAGTAGTATT+GGG + chr2_1:53499914-53499933 None:intergenic 25.0%
! AGCATTATTAGTAGTAGTAT+TGG + chr2_1:53499915-53499934 None:intergenic 25.0%
!! GTGATAAAAGATTTTTCTTC+TGG + chr2_1:53499942-53499961 None:intergenic 25.0%
! AAAATATAACAGCACCAAAA+AGG + chr2_1:53499996-53500015 None:intergenic 25.0%
! TATAAACAAATTCAGCAGAA+AGG + chr2_1:53500087-53500106 None:intergenic 25.0%
!!! AGACTTCTTTTGAAAAATTG+TGG - chr2_1:53500163-53500182 Msa0211860:intron 25.0%
!!! TTTTGAAAAATTGTGGATGA+GGG - chr2_1:53500170-53500189 Msa0211860:intron 25.0%
! ATTAAGTAAGGTGACATTAA+TGG - chr2_1:53500201-53500220 Msa0211860:intron 25.0%
! GACTACTTCATATAAATAAC+AGG + chr2_1:53500487-53500506 None:intergenic 25.0%
!! TTATTTATCTAGTGGTTTGT+TGG - chr2_1:53500527-53500546 Msa0211860:intron 25.0%
! ACATAGGAAATCTAAACAAA+GGG + chr2_1:53500853-53500872 None:intergenic 25.0%
! TACATAGGAAATCTAAACAA+AGG + chr2_1:53500854-53500873 None:intergenic 25.0%
!! ATATTGGTTAATATGTGTAG+TGG + chr2_1:53501147-53501166 None:intergenic 25.0%
! TTTATCATGTAAGACAAATG+TGG + chr2_1:53501175-53501194 None:intergenic 25.0%
! ACATTTGTCTTACATGATAA+AGG - chr2_1:53501174-53501193 Msa0211860:five_prime_UTR 25.0%
TGTTTGTTTGGATTGAATTC+TGG - chr2_1:53494135-53494154 Msa0211860:three_prime_UTR 30.0%
GGAAAAGAAAGAGAAAAGAA+AGG - chr2_1:53494522-53494541 Msa0211860:CDS 30.0%
TCCAGAGATAAATCTGATAA+AGG - chr2_1:53494556-53494575 Msa0211860:CDS 30.0%
ACCTTTATCAGATTTATCTC+TGG + chr2_1:53494560-53494579 None:intergenic 30.0%
GAAGAAAGAAAGAATAATGG+TGG + chr2_1:53494842-53494861 None:intergenic 30.0%
TCTTTCTTTCTTCAATCATG+CGG - chr2_1:53494849-53494868 Msa0211860:intron 30.0%
TCTATTAATATACGGTGCAT+CGG + chr2_1:53495178-53495197 None:intergenic 30.0%
TTCAGAAACATTAGCATTGT+TGG - chr2_1:53495230-53495249 Msa0211860:intron 30.0%
TCAGAAACATTAGCATTGTT+GGG - chr2_1:53495231-53495250 Msa0211860:intron 30.0%
TGCAAATACTACATCTCTTT+GGG - chr2_1:53495283-53495302 Msa0211860:intron 30.0%
TCATACTGAAATGGATCTAA+GGG + chr2_1:53495322-53495341 None:intergenic 30.0%
TTCATACTGAAATGGATCTA+AGG + chr2_1:53495323-53495342 None:intergenic 30.0%
ACATATTGTAATGTGTAACG+GGG - chr2_1:53495474-53495493 Msa0211860:intron 30.0%
!! ACATAGTCTTTTTAGTGTTC+AGG + chr2_1:53495661-53495680 None:intergenic 30.0%
TCAAGTATACATTCACAATC+GGG + chr2_1:53495685-53495704 None:intergenic 30.0%
CTTCAACAATGTACTAAAAG+GGG + chr2_1:53495874-53495893 None:intergenic 30.0%
GCTTCAACAATGTACTAAAA+GGG + chr2_1:53495875-53495894 None:intergenic 30.0%
TGCTTCAACAATGTACTAAA+AGG + chr2_1:53495876-53495895 None:intergenic 30.0%
ACGATATTCCAAAGAAACAA+TGG + chr2_1:53495956-53495975 None:intergenic 30.0%
ACATCTTGGTATTTCAACAA+TGG + chr2_1:53496249-53496268 None:intergenic 30.0%
! GAATCTTTGTTTGGATACAT+TGG - chr2_1:53496411-53496430 Msa0211860:intron 30.0%
CATGTCCATTGTAATATACT+TGG - chr2_1:53496525-53496544 Msa0211860:intron 30.0%
ACTTGGACAAAAAACTCTAT+TGG - chr2_1:53496542-53496561 Msa0211860:intron 30.0%
!!! TAAGATAGTTTTGAGTGTAG+AGG - chr2_1:53496590-53496609 Msa0211860:intron 30.0%
ATCCGTAATCTGAATTTGAT+TGG - chr2_1:53496777-53496796 Msa0211860:intron 30.0%
AGTCAATCAAATTCAGATCA+CGG + chr2_1:53496856-53496875 None:intergenic 30.0%
ATATTAGTGACACGTGTTAT+TGG + chr2_1:53497439-53497458 None:intergenic 30.0%
! AACACGTGTCACTAATATAA+TGG - chr2_1:53497441-53497460 Msa0211860:intron 30.0%
ATTTGAAAACAGTGGTACTT+TGG - chr2_1:53497509-53497528 Msa0211860:intron 30.0%
!!! TTATTTTAGTAGTGCTACAG+TGG - chr2_1:53497539-53497558 Msa0211860:intron 30.0%
! CTTATAGCTTGTACTAAAAC+CGG + chr2_1:53497573-53497592 None:intergenic 30.0%
AATCTTACTTTGTTCCTTTG+CGG - chr2_1:53497734-53497753 Msa0211860:intron 30.0%
CGACCTAGATATTTGTAAAT+TGG - chr2_1:53497876-53497895 Msa0211860:intron 30.0%
!!! AAGCAATGTTGTTTTCAAAG+TGG - chr2_1:53497924-53497943 Msa0211860:intron 30.0%
!!! TGTTGTTTTCAAAGTGGTTT+AGG - chr2_1:53497930-53497949 Msa0211860:intron 30.0%
!! TTTTCAAAGTGGTTTAGGTT+GGG - chr2_1:53497935-53497954 Msa0211860:intron 30.0%
AATTCAGTTAAGTAGAGACA+TGG + chr2_1:53497987-53498006 None:intergenic 30.0%
TATCAGTATTCTGTTTGACA+TGG - chr2_1:53498041-53498060 Msa0211860:intron 30.0%
! TAGGAGTTAGAACTTTTGTA+AGG - chr2_1:53498071-53498090 Msa0211860:intron 30.0%
! ATGTCTATTGACTAGATCAT+TGG + chr2_1:53498166-53498185 None:intergenic 30.0%
!!! ATTTTTAGGTTTACTGCTTG+AGG - chr2_1:53498363-53498382 Msa0211860:intron 30.0%
AAGTTGAATTTGCAGTGAAA+TGG + chr2_1:53498519-53498538 None:intergenic 30.0%
AATACACCGATGATTCAAAA+GGG + chr2_1:53498561-53498580 None:intergenic 30.0%
GTGATTGCTTTATGTTTGAT+TGG - chr2_1:53498626-53498645 Msa0211860:intron 30.0%
GATAATAGTCTGCTGTTATA+AGG - chr2_1:53498712-53498731 Msa0211860:intron 30.0%
TCTGTTATGCTACTCATAAT+CGG - chr2_1:53499183-53499202 Msa0211860:intron 30.0%
TCCGAGATGTGTTTATAATT+AGG - chr2_1:53499288-53499307 Msa0211860:intron 30.0%
GAGATGTGTTTATAATTAGG+AGG - chr2_1:53499291-53499310 Msa0211860:intron 30.0%
!! ACCTTATAAGTCGATTTTGT+CGG - chr2_1:53499322-53499341 Msa0211860:intron 30.0%
! GACAAAATCGATTTATAAGG+TGG + chr2_1:53499362-53499381 None:intergenic 30.0%
!! CCTTATAAATCGATTTTGTC+GGG - chr2_1:53499362-53499381 Msa0211860:intron 30.0%
! GCCTACAAAATTGACTTATA+AGG + chr2_1:53499404-53499423 None:intergenic 30.0%
! CAATTTTGTAGGCTTAAGTT+AGG - chr2_1:53499411-53499430 Msa0211860:intron 30.0%
TATCCCAATCTTAGAAGTTT+GGG + chr2_1:53499442-53499461 None:intergenic 30.0%
ATATCCCAATCTTAGAAGTT+TGG + chr2_1:53499443-53499462 None:intergenic 30.0%
! ACATAAGTCAGATTCTAAGA+TGG + chr2_1:53499567-53499586 None:intergenic 30.0%
! AAGCCTTATAAAGATTACGT+TGG - chr2_1:53499631-53499650 Msa0211860:intron 30.0%
! ATTTGGTATCAGATCCTTTT+TGG - chr2_1:53499979-53499998 Msa0211860:intron 30.0%
!! CTTTTGAAAAATTGTGGATG+AGG - chr2_1:53500169-53500188 Msa0211860:intron 30.0%
! ATTTTTACAAACCATCCTTG+AGG - chr2_1:53500226-53500245 Msa0211860:intron 30.0%
! TTTTTACAAACCATCCTTGA+GGG - chr2_1:53500227-53500246 Msa0211860:intron 30.0%
CAGCAAGTTTAACAAAATCA+CGG - chr2_1:53500322-53500341 Msa0211860:intron 30.0%
TTGGAGATTTAACAAAACCA+CGG + chr2_1:53500353-53500372 None:intergenic 30.0%
TGTTGAGGTTATTTATCTAG+TGG - chr2_1:53500519-53500538 Msa0211860:intron 30.0%
!! TAGTGGTTTGTTGGTATTTA+TGG - chr2_1:53500536-53500555 Msa0211860:intron 30.0%
!! TAGGATTTTCAAGAATTGTC+CGG - chr2_1:53500578-53500597 Msa0211860:intron 30.0%
! GTTTTTCTCTGATCTGTTAT+CGG - chr2_1:53500661-53500680 Msa0211860:intron 30.0%
TTTGTCAAAGCTTGGAATAA+AGG - chr2_1:53500710-53500729 Msa0211860:intron 30.0%
CTTGAATCGAATTACTATGA+AGG - chr2_1:53500737-53500756 Msa0211860:intron 30.0%
AACAAAGGGTTTATAGAGAT+TGG + chr2_1:53500839-53500858 None:intergenic 30.0%
GTTGTTAGTAACTGTTACAT+AGG + chr2_1:53500869-53500888 None:intergenic 30.0%
GTATCAATCTTTAAGTGTGT+TGG - chr2_1:53500950-53500969 Msa0211860:intron 30.0%
AAGGTATAAAAAGCAGAGAA+TGG - chr2_1:53500995-53501014 Msa0211860:intron 30.0%
TATAAAAAGCAGAGAATGGA+TGG - chr2_1:53500999-53501018 Msa0211860:intron 30.0%
AAAAAAAAAATGGGGGATTC+AGG - chr2_1:53501034-53501053 Msa0211860:intron 30.0%
TGATTCACATAAAGACACAA+GGG + chr2_1:53501097-53501116 None:intergenic 30.0%
ATTGAATTCTGGATCGATCA+TGG - chr2_1:53494146-53494165 Msa0211860:three_prime_UTR 35.0%
TTGAATTCTGGATCGATCAT+GGG - chr2_1:53494147-53494166 Msa0211860:three_prime_UTR 35.0%
TGCAGTGATATTTGATTCAC+TGG - chr2_1:53494328-53494347 Msa0211860:three_prime_UTR 35.0%
GGTCTAATCAAACAAAAGAG+TGG + chr2_1:53494781-53494800 None:intergenic 35.0%
TTCGAATTCTAGTGGCAATA+AGG + chr2_1:53494802-53494821 None:intergenic 35.0%
CAAAGAGATGTAGTATTTGC+AGG + chr2_1:53495284-53495303 None:intergenic 35.0%
CTGCAAATACTACATCTCTT+TGG - chr2_1:53495282-53495301 Msa0211860:intron 35.0%
TGCTCGAATTCATACTGAAA+TGG + chr2_1:53495331-53495350 None:intergenic 35.0%
! TGTTTTCAACACTTACAACG+AGG + chr2_1:53495457-53495476 None:intergenic 35.0%
ACACATACATCATGAAGTCA+TGG - chr2_1:53495499-53495518 Msa0211860:intron 35.0%
AATCACACCATTGTTTGTCA+AGG - chr2_1:53495586-53495605 Msa0211860:intron 35.0%
TCTACCATGAATATTCCTGT+TGG - chr2_1:53495609-53495628 Msa0211860:intron 35.0%
CAAGTATACATTCACAATCG+GGG + chr2_1:53495684-53495703 None:intergenic 35.0%
AGTTTACTCAGATGTAGTCA+TGG + chr2_1:53495745-53495764 None:intergenic 35.0%
CTGAACTCTTCGTAAATAGA+GGG + chr2_1:53495800-53495819 None:intergenic 35.0%
ACTGAACTCTTCGTAAATAG+AGG + chr2_1:53495801-53495820 None:intergenic 35.0%
GAGTTCAGTAGATCTGTAAT+AGG - chr2_1:53495812-53495831 Msa0211860:intron 35.0%
ACATAGCTCAAAACTTTCTG+AGG + chr2_1:53496185-53496204 None:intergenic 35.0%
ATGGAGGTTTAGACAGTAAT+TGG + chr2_1:53496230-53496249 None:intergenic 35.0%
TCTTGGTATTTCAACAATGG+AGG + chr2_1:53496246-53496265 None:intergenic 35.0%
TTCATGACATGCAAACATCT+TGG + chr2_1:53496263-53496282 None:intergenic 35.0%
TGTCTGGTTGAATCTTTGTT+TGG - chr2_1:53496402-53496421 Msa0211860:intron 35.0%
GTTGAAAGAACAAACACAGA+AGG + chr2_1:53496506-53496525 None:intergenic 35.0%
TGGACAAAAAACTCTATTGG+AGG - chr2_1:53496545-53496564 Msa0211860:intron 35.0%
!! TTTTGTTGTGTAATGAACCG+AGG - chr2_1:53496625-53496644 Msa0211860:intron 35.0%
TAAATAGATATCGTCCTCCT+CGG + chr2_1:53496645-53496664 None:intergenic 35.0%
ATTTGTAGACACGATCTGAT+TGG - chr2_1:53496702-53496721 Msa0211860:intron 35.0%
CTAAATTAGCCCACCTAAAT+CGG - chr2_1:53497038-53497057 Msa0211860:intron 35.0%
CTTTCCAAAGAGTCTCAAAA+GGG - chr2_1:53497661-53497680 Msa0211860:intron 35.0%
ATCATTACTAAGTTCCGCAA+AGG + chr2_1:53497751-53497770 None:intergenic 35.0%
ATTAATCATGTATCAGCTGC+AGG - chr2_1:53497769-53497788 Msa0211860:intron 35.0%
! GTTTTCAAAGTGGTTTAGGT+TGG - chr2_1:53497934-53497953 Msa0211860:intron 35.0%
!! TTTCAAAGTGGTTTAGGTTG+GGG - chr2_1:53497936-53497955 Msa0211860:intron 35.0%
! CAAAAGAACATTGGTACTGA+AGG - chr2_1:53498015-53498034 Msa0211860:intron 35.0%
AGTATTCTGTTTGACATGGA+GGG - chr2_1:53498045-53498064 Msa0211860:intron 35.0%
! TAGTTCTTCTAGGAATCAAG+AGG - chr2_1:53498100-53498119 Msa0211860:intron 35.0%
TTTATAGGTATTTGCAAGCC+TGG + chr2_1:53498341-53498360 None:intergenic 35.0%
GAGCAAGGAAAAAACATGAA+AGG - chr2_1:53498390-53498409 Msa0211860:intron 35.0%
! TGGGACAAAGTATCTGTATA+AGG - chr2_1:53498470-53498489 Msa0211860:intron 35.0%
ATGATTCAAAAGGGAAAGAC+AGG + chr2_1:53498552-53498571 None:intergenic 35.0%
! GTCTTTCCCTTTTGAATCAT+CGG - chr2_1:53498552-53498571 Msa0211860:intron 35.0%
CAATACACCGATGATTCAAA+AGG + chr2_1:53498562-53498581 None:intergenic 35.0%
AAACCAATCATTTCACTCCA+TGG - chr2_1:53498595-53498614 Msa0211860:intron 35.0%
! AGCAATCACTAATTTTGCCA+TGG + chr2_1:53498615-53498634 None:intergenic 35.0%
GGTATTATAGATTATGGGTC+AGG - chr2_1:53498657-53498676 Msa0211860:intron 35.0%
ATTTGCAAGACTACACACAT+AGG - chr2_1:53498803-53498822 Msa0211860:intron 35.0%
AGCCTCTTGTGTAAAAAACT+GGG - chr2_1:53499054-53499073 Msa0211860:intron 35.0%
!!! TACCCAGTTTTTTACACAAG+AGG + chr2_1:53499059-53499078 None:intergenic 35.0%
CTTGTGTAAAAAACTGGGTA+AGG - chr2_1:53499059-53499078 Msa0211860:intron 35.0%
CTTACAGTATACCAAATGGT+GGG - chr2_1:53499085-53499104 Msa0211860:intron 35.0%
CTGTTATGCTACTCATAATC+GGG - chr2_1:53499184-53499203 Msa0211860:intron 35.0%
!! CCTTATAAGTCGATTTTGTC+GGG - chr2_1:53499323-53499342 Msa0211860:intron 35.0%
! CCCGACAAAATCGATTTATA+AGG + chr2_1:53499365-53499384 None:intergenic 35.0%
!! TCAACCCAAACTTCTAAGAT+TGG - chr2_1:53499435-53499454 Msa0211860:intron 35.0%
!! CAACCCAAACTTCTAAGATT+GGG - chr2_1:53499436-53499455 Msa0211860:intron 35.0%
! TCTAGGACGTACTATGATAA+AGG - chr2_1:53499489-53499508 Msa0211860:intron 35.0%
! CTCATTGAGCTAACTTTTGA+GGG + chr2_1:53499598-53499617 None:intergenic 35.0%
! ACTCATTGAGCTAACTTTTG+AGG + chr2_1:53499599-53499618 None:intergenic 35.0%
AAAGTTAGCTCAATGAGTGA+AGG - chr2_1:53499601-53499620 Msa0211860:intron 35.0%
TGGCCAACGTAATCTTTATA+AGG + chr2_1:53499637-53499656 None:intergenic 35.0%
CAGCAAAAGTGAAAGAAACA+TGG - chr2_1:53499871-53499890 Msa0211860:intron 35.0%
! TTAGTAGTAGTATTGGGAGT+GGG + chr2_1:53499908-53499927 None:intergenic 35.0%
! ATTAGTAGTAGTATTGGGAG+TGG + chr2_1:53499909-53499928 None:intergenic 35.0%
TTCTTGCCATGCTGAATATT+TGG - chr2_1:53499962-53499981 Msa0211860:intron 35.0%
CTGATACCAAATATTCAGCA+TGG + chr2_1:53499971-53499990 None:intergenic 35.0%
! AACTGACAGTTCAAGAGTAT+AGG - chr2_1:53500125-53500144 Msa0211860:intron 35.0%
! TTTTACAAACCATCCTTGAG+GGG - chr2_1:53500228-53500247 Msa0211860:intron 35.0%
! TTTTCGCAAAAGCTATGCTT+TGG + chr2_1:53500372-53500391 None:intergenic 35.0%
GGTAGCAAACTCATTATTCT+TGG + chr2_1:53500618-53500637 None:intergenic 35.0%
!! AGAATAATGAGTTTGCTACC+TGG - chr2_1:53500618-53500637 Msa0211860:intron 35.0%
TTGCAGAATTTGTCAAAGCT+TGG - chr2_1:53500702-53500721 Msa0211860:intron 35.0%
!! CTAACAACTGACTTGAAACT+CGG - chr2_1:53500881-53500900 Msa0211860:intron 35.0%
CATAAAGACACAAGGGAAAT+TGG + chr2_1:53501090-53501109 None:intergenic 35.0%
CTGATTCACATAAAGACACA+AGG + chr2_1:53501098-53501117 None:intergenic 35.0%
GAAGGTTCAAACAAGTGTTC+CGG + chr2_1:53494097-53494116 None:intergenic 40.0%
! AAGCAGAGCACTTGTTTGTT+TGG - chr2_1:53494123-53494142 Msa0211860:three_prime_UTR 40.0%
GAAAAAGAGGCAGACTGAAA+AGG + chr2_1:53494254-53494273 None:intergenic 40.0%
CAGATGAGAAGAAAAGCAAG+AGG - chr2_1:53494452-53494471 Msa0211860:exon 40.0%
! ATGATGATGAGAAGAAGAGC+AGG - chr2_1:53494494-53494513 Msa0211860:CDS 40.0%
TGTAGTATTTGCAGGAACGA+GGG + chr2_1:53495276-53495295 None:intergenic 40.0%
ATGTAGTATTTGCAGGAACG+AGG + chr2_1:53495277-53495296 None:intergenic 40.0%
GTATGAATTCGAGCAGATTG+TGG - chr2_1:53495336-53495355 Msa0211860:intron 40.0%
AATTCAACTCCGTCGTATTC+CGG - chr2_1:53495399-53495418 Msa0211860:CDS 40.0%
CAATTCCTCTTCAATCCTAC+TGG + chr2_1:53495425-53495444 None:intergenic 40.0%
CAGTAGGATTGAAGAGGAAT+TGG - chr2_1:53495423-53495442 Msa0211860:intron 40.0%
AGGATTGAAGAGGAATTGGT+TGG - chr2_1:53495427-53495446 Msa0211860:intron 40.0%
CAGCTATGACATGTGAACAA+GGG - chr2_1:53495538-53495557 Msa0211860:intron 40.0%
GTGTGATTGTGGTGAATTTC+AGG + chr2_1:53495574-53495593 None:intergenic 40.0%
GACAAACAATGGTGTGATTG+TGG + chr2_1:53495585-53495604 None:intergenic 40.0%
TGGTAGACCTTGACAAACAA+TGG + chr2_1:53495596-53495615 None:intergenic 40.0%
CCATGAATATTCCTGTTGGT+CGG - chr2_1:53495613-53495632 Msa0211860:intron 40.0%
!! TCTTTTTAGTGTTCAGGAGC+TGG + chr2_1:53495655-53495674 None:intergenic 40.0%
ATTGGATATCGCTCGTTGTT+TGG - chr2_1:53495710-53495729 Msa0211860:intron 40.0%
CTTCGTAAATAGAGGGAGTA+AGG + chr2_1:53495793-53495812 None:intergenic 40.0%
TAGATCTGTAATAGGTTGCC+TGG - chr2_1:53495820-53495839 Msa0211860:intron 40.0%
TAATAGGTTGCCTGGACAAT+TGG - chr2_1:53495828-53495847 Msa0211860:intron 40.0%
! GCTTGTAGCCATTGTTTCTT+TGG - chr2_1:53495945-53495964 Msa0211860:intron 40.0%
! GTCTGATGATGATGTGAAGT+GGG + chr2_1:53495982-53496001 None:intergenic 40.0%
ACACTACAGGAACCAAATCA+GGG + chr2_1:53496009-53496028 None:intergenic 40.0%
TGAGTCATTGAGTATCCTGA+AGG - chr2_1:53496041-53496060 Msa0211860:intron 40.0%
TATGAGTCGTTGAATCTTGC+AGG + chr2_1:53496317-53496336 None:intergenic 40.0%
! CTCTTTCACAAGGACTTGTT+TGG + chr2_1:53496340-53496359 None:intergenic 40.0%
AGTCCTTGTGAAAGAGTTGT+AGG - chr2_1:53496344-53496363 Msa0211860:intron 40.0%
GTCCTTGTGAAAGAGTTGTA+GGG - chr2_1:53496345-53496364 Msa0211860:intron 40.0%
TACCCTACAACTCTTTCACA+AGG + chr2_1:53496350-53496369 None:intergenic 40.0%
TGACTGAGTGAGATTTCGAT+AGG - chr2_1:53496871-53496890 Msa0211860:intron 40.0%
ATAAAACAACCCACTTGGGT+TGG + chr2_1:53497134-53497153 None:intergenic 40.0%
TGCTACAGTGGTAAAAAAGC+CGG - chr2_1:53497551-53497570 Msa0211860:intron 40.0%
GCTTTCCAAAGAGTCTCAAA+AGG - chr2_1:53497660-53497679 Msa0211860:intron 40.0%
!!! TAAGCCCTTTTGAGACTCTT+TGG + chr2_1:53497668-53497687 None:intergenic 40.0%
AAAGGGCTTATGTCAGTAGT+TGG - chr2_1:53497678-53497697 Msa0211860:intron 40.0%
CAGTATTCTGTTTGACATGG+AGG - chr2_1:53498044-53498063 Msa0211860:intron 40.0%
! AAGGCTATGCTAGTTCTTCT+AGG - chr2_1:53498090-53498109 Msa0211860:intron 40.0%
TCTAGGAATCAAGAGGATAC+TGG - chr2_1:53498107-53498126 Msa0211860:intron 40.0%
AATTTGCAGTGAAATGGCAC+AGG + chr2_1:53498513-53498532 None:intergenic 40.0%
CAAAAGGGAAAGACAGGAAT+AGG + chr2_1:53498546-53498565 None:intergenic 40.0%
TTGCCATGGAGTGAAATGAT+TGG + chr2_1:53498601-53498620 None:intergenic 40.0%
TAACCCTAAAAGCAAGCTCA+AGG - chr2_1:53498686-53498705 Msa0211860:intron 40.0%
!! ACTCCTTGAGCTTGCTTTTA+GGG + chr2_1:53498692-53498711 None:intergenic 40.0%
CTGCTGTTATAAGGTCTACT+TGG - chr2_1:53498721-53498740 Msa0211860:intron 40.0%
CTTTACATGTCCTATCCTAG+AGG + chr2_1:53498777-53498796 None:intergenic 40.0%
AGAGTCTCATATTGGATGAG+AGG - chr2_1:53498849-53498868 Msa0211860:intron 40.0%
!! CGGTTTTGTAGGATTGAGTT+AGG - chr2_1:53498921-53498940 Msa0211860:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+TGG - chr2_1:53499053-53499072 Msa0211860:intron 40.0%
GCTGCTTACAGTATACCAAA+TGG - chr2_1:53499081-53499100 Msa0211860:intron 40.0%
GCTTACAGTATACCAAATGG+TGG - chr2_1:53499084-53499103 Msa0211860:intron 40.0%
CTGATAAAAAAAAGGGCAGC+CGG + chr2_1:53499150-53499169 None:intergenic 40.0%
ATTCTCCAAATGTCCAGTCT+TGG - chr2_1:53499213-53499232 Msa0211860:intron 40.0%
GTTCCCCATTCAATGAGATA+TGG - chr2_1:53499265-53499284 Msa0211860:intron 40.0%
GGACCATATCTCATTGAATG+GGG + chr2_1:53499271-53499290 None:intergenic 40.0%
CGGACCATATCTCATTGAAT+GGG + chr2_1:53499272-53499291 None:intergenic 40.0%
TCGGACCATATCTCATTGAA+TGG + chr2_1:53499273-53499292 None:intergenic 40.0%
! CCCGACAAAATCGACTTATA+AGG + chr2_1:53499326-53499345 None:intergenic 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG - chr2_1:53499333-53499352 Msa0211860:intron 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG - chr2_1:53499333-53499352 Msa0211860:intron 40.0%
AGCTACACTGAAGGTAATCT+AGG - chr2_1:53499472-53499491 Msa0211860:intron 40.0%
AGGACGTACTATGATAAAGG+AGG - chr2_1:53499492-53499511 Msa0211860:intron 40.0%
TCTTACATTGACCAGTGATG+TGG + chr2_1:53499657-53499676 None:intergenic 40.0%
AAAGGCAACACTGGTAAAAC+AGG + chr2_1:53500069-53500088 None:intergenic 40.0%
TCTATGAGATGCTAGCTCAA+TGG + chr2_1:53500267-53500286 None:intergenic 40.0%
TTGAAGACTCCGTGTATGTT+TGG - chr2_1:53500294-53500313 Msa0211860:intron 40.0%
GCTGTGATTCCAAACATACA+CGG + chr2_1:53500306-53500325 None:intergenic 40.0%
CGGTGAGTTTGATAGAATCA+AGG + chr2_1:53500405-53500424 None:intergenic 40.0%
GTCAGAAACTGTGATTGTTG+AGG - chr2_1:53500504-53500523 Msa0211860:intron 40.0%
CTTGGCAAAATAGTCATCAC+CGG + chr2_1:53500600-53500619 None:intergenic 40.0%
ATTCTTCTCTTCTTTCAGCC+AGG + chr2_1:53500639-53500658 None:intergenic 40.0%
!! TTAAGTGTGTTGGTTGTTCG+CGG - chr2_1:53500960-53500979 Msa0211860:intron 40.0%
! GGTTATGATTTGCAGAGTGA+CGG - chr2_1:53501055-53501074 Msa0211860:CDS 40.0%
GACAAATGTGGCACACATAT+TGG + chr2_1:53501163-53501182 None:intergenic 40.0%
AAACAAGTGTTCCGGTGTCT+AGG + chr2_1:53494089-53494108 None:intergenic 45.0%
ACAAACAAGTGCTCTGCTTG+AGG + chr2_1:53494122-53494141 None:intergenic 45.0%
TCTTCGCAATCCGAATCTGA+AGG - chr2_1:53494198-53494217 Msa0211860:three_prime_UTR 45.0%
ATGAGAAGAAGAGCAGGAAG+AGG - chr2_1:53494500-53494519 Msa0211860:CDS 45.0%
TGAGAAGAAGAGCAGGAAGA+GGG - chr2_1:53494501-53494520 Msa0211860:CDS 45.0%
GCAGCTATGACATGTGAACA+AGG - chr2_1:53495537-53495556 Msa0211860:intron 45.0%
CCGACCAACAGGAATATTCA+TGG + chr2_1:53495616-53495635 None:intergenic 45.0%
TACCAGATGCCATCATTGCT+TGG - chr2_1:53495766-53495785 Msa0211860:intron 45.0%
ACCAGATGCCATCATTGCTT+GGG - chr2_1:53495767-53495786 Msa0211860:intron 45.0%
ACATGATGAAGGGAGACGTT+GGG + chr2_1:53495925-53495944 None:intergenic 45.0%
GGCTACAAGCACATGATGAA+GGG + chr2_1:53495935-53495954 None:intergenic 45.0%
TGGCTACAAGCACATGATGA+AGG + chr2_1:53495936-53495955 None:intergenic 45.0%
! GGTCTGATGATGATGTGAAG+TGG + chr2_1:53495983-53496002 None:intergenic 45.0%
CATCAGACCAATCCCTGATT+TGG - chr2_1:53495994-53496013 Msa0211860:intron 45.0%
ACAGGAACCAAATCAGGGAT+TGG + chr2_1:53496004-53496023 None:intergenic 45.0%
CACACTACAGGAACCAAATC+AGG + chr2_1:53496010-53496029 None:intergenic 45.0%
TTCCTGTAGTGTGTGATGCT+TGG - chr2_1:53496017-53496036 Msa0211860:intron 45.0%
AACCAAGCATCACACACTAC+AGG + chr2_1:53496022-53496041 None:intergenic 45.0%
TGTGTCGAATGCAGAAGACA+TGG - chr2_1:53496202-53496221 Msa0211860:intron 45.0%
TCAACCAGACAACTCCAAGA+GGG + chr2_1:53496393-53496412 None:intergenic 45.0%
TTCAACCAGACAACTCCAAG+AGG + chr2_1:53496394-53496413 None:intergenic 45.0%
! ATTGGAGGCATGACTATGAG+TGG - chr2_1:53496560-53496579 Msa0211860:intron 45.0%
TGTTGTGTAATGAACCGAGG+AGG - chr2_1:53496628-53496647 Msa0211860:intron 45.0%
!! ATTCTCTCTGGTGCCGATTT+AGG + chr2_1:53497054-53497073 None:intergenic 45.0%
!! GTTTCAGGTTCGATTCTCTC+TGG + chr2_1:53497066-53497085 None:intergenic 45.0%
GAATCGAACCTGAAACCTTG+AGG - chr2_1:53497070-53497089 Msa0211860:intron 45.0%
!! TGGCTTGGTGGTATTGACTT+GGG + chr2_1:53497114-53497133 None:intergenic 45.0%
!! TTGGCTTGGTGGTATTGACT+TGG + chr2_1:53497115-53497134 None:intergenic 45.0%
! GACACGTGTTATTGGAGAGT+GGG + chr2_1:53497431-53497450 None:intergenic 45.0%
! TGACACGTGTTATTGGAGAG+TGG + chr2_1:53497432-53497451 None:intergenic 45.0%
TGTTTGACATGGAGGGTCTT+AGG - chr2_1:53498052-53498071 Msa0211860:intron 45.0%
! GAATCAAGAGGATACTGGCT+AGG - chr2_1:53498112-53498131 Msa0211860:intron 45.0%
! TAGAGTAACTGCAGGGGTTT+TGG - chr2_1:53498135-53498154 Msa0211860:intron 45.0%
! AGAGTAACTGCAGGGGTTTT+GGG - chr2_1:53498136-53498155 Msa0211860:intron 45.0%
!!! ACTGCTTGAGGTTTTGAGCA+AGG - chr2_1:53498375-53498394 Msa0211860:intron 45.0%
!! CACTCCTTGAGCTTGCTTTT+AGG + chr2_1:53498693-53498712 None:intergenic 45.0%
! CAACATGCCATTTCACCTCT+AGG - chr2_1:53498759-53498778 Msa0211860:intron 45.0%
!! TGCCATTTCACCTCTAGGAT+AGG - chr2_1:53498764-53498783 Msa0211860:intron 45.0%
GTCCTATCCTAGAGGTGAAA+TGG + chr2_1:53498769-53498788 None:intergenic 45.0%
AGGTGTGGAGAGTCTCATAT+TGG - chr2_1:53498841-53498860 Msa0211860:intron 45.0%
! TCTAAGATAAGGGAGAGCCT+TGG - chr2_1:53498978-53498997 Msa0211860:intron 45.0%
GCTTCTAGTAGCTACACTGA+AGG - chr2_1:53499463-53499482 Msa0211860:intron 45.0%
AGGAGGTTACGATTCCGATA+TGG - chr2_1:53499509-53499528 Msa0211860:intron 45.0%
GGTACCAATGTTTGCAGTCT+GGG + chr2_1:53499546-53499565 None:intergenic 45.0%
TGGTACCAATGTTTGCAGTC+TGG + chr2_1:53499547-53499566 None:intergenic 45.0%
ATTCAGCAGAAAGGCAACAC+TGG + chr2_1:53500078-53500097 None:intergenic 45.0%
TGAGATGCTAGCTCAATGGA+CGG + chr2_1:53500263-53500282 None:intergenic 45.0%
AGTGTGCCTGTTGTGTGAAT+CGG - chr2_1:53501116-53501135 Msa0211860:five_prime_UTR 45.0%
!! ATGATATTATAAAATAAAAA+TGG - chr2_1:53495112-53495131 Msa0211860:intron 5.0%
GTCTAGGTGACTCTAGGTGT+AGG + chr2_1:53494073-53494092 None:intergenic 50.0%
ACCTAGAGTCACCTAGACAC+CGG - chr2_1:53494075-53494094 Msa0211860:three_prime_UTR 50.0%
AGTGCTCTGCTTGAGGTTGA+AGG + chr2_1:53494115-53494134 None:intergenic 50.0%
GCCACTAGAATTCGAACACG+TGG - chr2_1:53494806-53494825 Msa0211860:intron 50.0%
GCCACGTGTTCGAATTCTAG+TGG + chr2_1:53494810-53494829 None:intergenic 50.0%
! GCAGATTGTGGACGACCTTT+TGG - chr2_1:53495348-53495367 Msa0211860:intron 50.0%
TCCTCTTCAATCCTACTGGC+CGG + chr2_1:53495421-53495440 None:intergenic 50.0%
GAGTAAGGCCCAAGCAATGA+TGG + chr2_1:53495778-53495797 None:intergenic 50.0%
ATGATGAAGGGAGACGTTGG+GGG + chr2_1:53495923-53495942 None:intergenic 50.0%
CATGATGAAGGGAGACGTTG+GGG + chr2_1:53495924-53495943 None:intergenic 50.0%
CACATGATGAAGGGAGACGT+TGG + chr2_1:53495926-53495945 None:intergenic 50.0%
AACAAGATCGACCACCCTCT+TGG - chr2_1:53496376-53496395 Msa0211860:intron 50.0%
!! TCTCTGGTGCCGATTTAGGT+GGG + chr2_1:53497050-53497069 None:intergenic 50.0%
TCGAACCTGAAACCTTGAGG+AGG - chr2_1:53497073-53497092 Msa0211860:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG + chr2_1:53497107-53497126 None:intergenic 50.0%
TGGCTAGGTAGAGTAACTGC+AGG - chr2_1:53498127-53498146 Msa0211860:intron 50.0%
GGCTAGGTAGAGTAACTGCA+GGG - chr2_1:53498128-53498147 Msa0211860:intron 50.0%
GCTAGGTAGAGTAACTGCAG+GGG - chr2_1:53498129-53498148 Msa0211860:intron 50.0%
GAAATGGCACAGGACAAGGA+TGG + chr2_1:53498503-53498522 None:intergenic 50.0%
CAGTGAAATGGCACAGGACA+AGG + chr2_1:53498507-53498526 None:intergenic 50.0%
ATAGGTTGCCCGACAGATCT+AGG - chr2_1:53498821-53498840 Msa0211860:intron 50.0%
TCTCCACACCTAGATCTGTC+GGG + chr2_1:53498832-53498851 None:intergenic 50.0%
CTCTCCACACCTAGATCTGT+CGG + chr2_1:53498833-53498852 None:intergenic 50.0%
ACAAAGCTCCCACATACGCA+GGG + chr2_1:53499124-53499143 None:intergenic 50.0%
! TATGTGGGAGCTTTGTGCAC+CGG - chr2_1:53499128-53499147 Msa0211860:intron 50.0%
CACGTCCAAGACTGGACATT+TGG + chr2_1:53499221-53499240 None:intergenic 50.0%
AATGTCCAGTCTTGGACGTG+AGG - chr2_1:53499221-53499240 Msa0211860:intron 50.0%
GGGAGACTCTGCTTCCATAT+CGG + chr2_1:53499526-53499545 None:intergenic 50.0%
GTCTCCCAGACTGCAAACAT+TGG - chr2_1:53499539-53499558 Msa0211860:intron 50.0%
GATTACGTTGGCCACATCAC+TGG - chr2_1:53499643-53499662 Msa0211860:intron 50.0%
GAACTGTCAGTTGCAGCATG+TGG + chr2_1:53500117-53500136 None:intergenic 50.0%
AGTTCGAATCCCCTCAAGGA+TGG + chr2_1:53500240-53500259 None:intergenic 50.0%
!! ACAAAATCACGGTGTCACCG+TGG - chr2_1:53500333-53500352 Msa0211860:intron 50.0%
! TTCCATTTATGGGCTGTGCG+AGG + chr2_1:53500776-53500795 None:intergenic 50.0%
TTCGCGGCGCCAAAAAGAAA+AGG - chr2_1:53500976-53500995 Msa0211860:intron 50.0%
GCCTGTTGTGTGAATCGGTA+AGG - chr2_1:53501121-53501140 Msa0211860:five_prime_UTR 50.0%
!! GCCTTACCGATTCACACAAC+AGG + chr2_1:53501125-53501144 None:intergenic 50.0%
TCCGGTGTCTAGGTGACTCT+AGG + chr2_1:53494079-53494098 None:intergenic 55.0%
! ACCTTTTGGATCCCTCCGCA+TGG - chr2_1:53495362-53495381 Msa0211860:intron 55.0%
TGTGCCACAATCCAGCCATG+CGG + chr2_1:53495380-53495399 None:intergenic 55.0%
TCCTACTGGCCGGAATACGA+CGG + chr2_1:53495411-53495430 None:intergenic 55.0%
TCCGGCCAGTAGGATTGAAG+AGG - chr2_1:53495417-53495436 Msa0211860:intron 55.0%
GCCCAAGCAATGATGGCATC+TGG + chr2_1:53495771-53495790 None:intergenic 55.0%
TCCAGTCACGCCAATTGTCC+AGG + chr2_1:53495841-53495860 None:intergenic 55.0%
ACCACCCTCTTGGAGTTGTC+TGG - chr2_1:53496386-53496405 Msa0211860:intron 55.0%
ACCAGACAACTCCAAGAGGG+TGG + chr2_1:53496390-53496409 None:intergenic 55.0%
!! CTCTCTGGTGCCGATTTAGG+TGG + chr2_1:53497051-53497070 None:intergenic 55.0%
GTGCTCCTCCTCAAGGTTTC+AGG + chr2_1:53497081-53497100 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG + chr2_1:53497108-53497127 None:intergenic 55.0%
TACCACCAAGCCAACCCAAG+TGG - chr2_1:53497121-53497140 Msa0211860:intron 55.0%
ACCACCAAGCCAACCCAAGT+GGG - chr2_1:53497122-53497141 Msa0211860:intron 55.0%
!! ACAACCCACTTGGGTTGGCT+TGG + chr2_1:53497129-53497148 None:intergenic 55.0%
TTGCCCGACAGATCTAGGTG+TGG - chr2_1:53498826-53498845 Msa0211860:intron 55.0%
ACAACTTCACCGTTGCGCCA+AGG + chr2_1:53498998-53499017 None:intergenic 55.0%
ACATACGCAGGGTCTGGCAA+GGG + chr2_1:53499113-53499132 None:intergenic 55.0%
TTGCCAGACCCTGCGTATGT+GGG - chr2_1:53499113-53499132 Msa0211860:intron 55.0%
CACAAAGCTCCCACATACGC+AGG + chr2_1:53499125-53499144 None:intergenic 55.0%
TCCAGTCTTGGACGTGAGGA+TGG - chr2_1:53499225-53499244 Msa0211860:intron 55.0%
ACCATCCTCACGTCCAAGAC+TGG + chr2_1:53499229-53499248 None:intergenic 55.0%
ACGGAGTTCGAATCCCCTCA+AGG + chr2_1:53500244-53500263 None:intergenic 55.0%
GCCATGCGGAGGGATCCAAA+AGG + chr2_1:53495366-53495385 None:intergenic 60.0%
TTTGGATCCCTCCGCATGGC+TGG - chr2_1:53495366-53495385 Msa0211860:intron 60.0%
CCACAATCCAGCCATGCGGA+GGG + chr2_1:53495376-53495395 None:intergenic 60.0%
TCCGTCGTATTCCGGCCAGT+AGG - chr2_1:53495407-53495426 Msa0211860:CDS 60.0%
ATTCCTGTTGGTCGGCCGCT+TGG - chr2_1:53495621-53495640 Msa0211860:intron 60.0%
!! GAGCTGGTTCGTCCACCAAG+CGG + chr2_1:53495639-53495658 None:intergenic 60.0%
GCCTGGACAATTGGCGTGAC+TGG - chr2_1:53495837-53495856 Msa0211860:intron 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr2_1:53497088-53497107 None:intergenic 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr2_1:53497087-53497106 Msa0211860:intron 60.0%
!! ACCCACTTGGGTTGGCTTGG+TGG + chr2_1:53497126-53497145 None:intergenic 60.0%
AAGGGAGAGCCTTGGCGCAA+CGG - chr2_1:53498986-53499005 Msa0211860:intron 60.0%
TGGCAAGGGGTCCCACCATT+TGG + chr2_1:53499099-53499118 None:intergenic 60.0%
CATACGCAGGGTCTGGCAAG+GGG + chr2_1:53499112-53499131 None:intergenic 60.0%
CACATACGCAGGGTCTGGCA+AGG + chr2_1:53499114-53499133 None:intergenic 60.0%
CTTGCCAGACCCTGCGTATG+TGG - chr2_1:53499112-53499131 Msa0211860:intron 60.0%
CGCCTCGCACAGCCCATAAA+TGG - chr2_1:53500771-53500790 Msa0211860:intron 60.0%
CCCTCCGCATGGCTGGATTG+TGG - chr2_1:53495373-53495392 Msa0211860:intron 65.0%
GCCACAATCCAGCCATGCGG+AGG + chr2_1:53495377-53495396 None:intergenic 65.0%
GCTCCCACATACGCAGGGTC+TGG + chr2_1:53499119-53499138 None:intergenic 65.0%
CCACCAAGCGGCCGACCAAC+AGG + chr2_1:53495627-53495646 None:intergenic 70.0%
CCTGTTGGTCGGCCGCTTGG+TGG - chr2_1:53495624-53495643 Msa0211860:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 53494018 53501253 53494018 ID=Msa0211860;Name=Msa0211860
chr2_1 mRNA 53494018 53501253 53494018 ID=Msa0211860-mRNA-1;Parent=Msa0211860;Name=Msa0211860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=147|0.5|1|1|1|1|3|445|112
chr2_1 exon 53494018 53494690 53494018 ID=Msa0211860-mRNA-1:exon:14909;Parent=Msa0211860-mRNA-1
chr2_1 exon 53495379 53495434 53495379 ID=Msa0211860-mRNA-1:exon:14908;Parent=Msa0211860-mRNA-1
chr2_1 exon 53501052 53501253 53501052 ID=Msa0211860-mRNA-1:exon:14907;Parent=Msa0211860-mRNA-1
chr2_1 five_prime_UTR 53501107 53501253 53501107 ID=Msa0211860-mRNA-1:five_prime_utr;Parent=Msa0211860-mRNA-1
chr2_1 CDS 53501052 53501106 53501052 ID=Msa0211860-mRNA-1:cds;Parent=Msa0211860-mRNA-1
chr2_1 CDS 53495379 53495434 53495379 ID=Msa0211860-mRNA-1:cds;Parent=Msa0211860-mRNA-1
chr2_1 CDS 53494463 53494690 53494463 ID=Msa0211860-mRNA-1:cds;Parent=Msa0211860-mRNA-1
chr2_1 three_prime_UTR 53494018 53494462 53494018 ID=Msa0211860-mRNA-1:three_prime_utr;Parent=Msa0211860-mRNA-1
Gene Sequence

>Msa0211860

ATGGGAAGCGATCGAAAATCAAAGAGAAGTTATTCTTCGCAATCCGAATCTGAAGATAAGAAGTTAAAAGACAAGCACAAAAGTAAACGCAGCAAAAGTGAAAGAAACATGGATTTTCAAGAATTGTCCGGTGATGACTATTTTGCCAAGAATAATGAGTTTGCTACCTGGCTGAAAGAAGAGAAGAATGTGTTTTTCTCTGATCTGTTATCGGAGTCAGCACGTGAGTTGTTTGCAGAATTTGTCAAAGCTTGGAATAAAGGAAAGCTTGAATCGAATTACTATGAAGGCATTAAAACTGCGCCTCGCACAGCCCATAAATGGAAAATCAAAAAGTAG
Protein sequence

>Msa0211860

MGSDRKSKRSYSSQSESEDKKLKDKHKSKRSKSERNMDFQELSGDDYFAKNNEFATWLKEEKNVFFSDLLSESARELFAEFVKAWNKGKLESNYYEGIKTAPRTAHKWKIKK*