AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721120 MtrunA17_Chr5g0412061 96.506 601 16 1 1 601 1 596 0.0 1181
Msa0721120 MtrunA17_Chr5g0421541 92.982 171 12 0 423 593 1 171 1.52e-108 323
Msa0721120 MtrunA17_Chr4g0049801 35.188 611 332 16 37 595 13 611 1.70e-94 302
Msa0721120 MtrunA17_Chr2g0279641 36.157 484 251 12 18 446 18 498 1.82e-73 250
Msa0721120 MtrunA17_Chr2g0279641 58.974 78 31 1 518 595 685 761 1.85e-17 86.3
Msa0721120 MtrunA17_Chr3g0140741 29.037 675 357 20 26 601 10 661 5.61e-52 189
Msa0721120 MtrunA17_Chr2g0285771 26.281 605 376 14 44 595 42 629 8.43e-47 174
Msa0721120 MtrunA17_Chr2g0285771 22.561 328 208 8 272 564 34 350 9.80e-11 64.7
Msa0721120 MtrunA17_Chr4g0002241 32.877 438 229 13 27 449 1 388 5.93e-46 171
Msa0721120 MtrunA17_Chr4g0002241 29.386 228 138 7 8 227 186 398 1.68e-18 89.4
Msa0721120 MtrunA17_Chr4g0002241 44.186 86 46 2 511 595 514 598 2.92e-11 66.2
Msa0721120 MtrunA17_Chr8g0376551 25.325 616 376 12 44 597 40 633 1.39e-44 168
Msa0721120 MtrunA17_Chr3g0127051 25.289 605 376 16 45 599 64 642 3.48e-44 167
Msa0721120 MtrunA17_Chr6g0453421 30.485 433 279 10 30 451 33 454 1.28e-39 152
Msa0721120 MtrunA17_Chr6g0453421 28.571 196 126 4 278 463 45 236 6.14e-17 84.3
Msa0721120 MtrunA17_Chr7g0217681 30.184 434 277 10 34 451 39 462 2.67e-34 137
Msa0721120 MtrunA17_Chr5g0421531 88.000 50 1 1 1 50 1 45 7.31e-24 94.7
Msa0721120 MtrunA17_Chr5g0412011 100.000 47 0 0 555 601 5 51 3.11e-23 92.8
Msa0721120 MtrunA17_Chr4g0071791 33.155 187 104 4 24 201 27 201 2.72e-19 90.9
Msa0721120 MtrunA17_Chr4g0071791 30.435 184 119 4 281 462 45 221 2.34e-12 69.3
Msa0721120 MtrunA17_Chr2g0298721 34.118 170 94 4 41 201 67 227 3.70e-18 87.8
Msa0721120 MtrunA17_Chr2g0298721 29.143 175 121 3 281 453 71 244 1.47e-12 70.1
Msa0721120 MtrunA17_Chr7g0249721 30.986 213 132 5 263 463 83 292 2.22e-16 80.5
Msa0721120 MtrunA17_Chr7g0249721 28.571 196 115 8 44 226 100 283 1.08e-12 69.3
Msa0721120 MtrunA17_Chr7g0274301 28.736 174 111 4 40 209 111 275 1.96e-14 76.3
Msa0721120 MtrunA17_Chr1g0184511 27.374 179 111 4 40 209 161 329 2.63e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721120 AT2G22600.1 35.535 636 321 15 31 595 12 629 1.14e-104 330
Msa0721120 AT1G51580.1 31.122 633 330 19 44 600 19 621 4.66e-67 230
Msa0721120 AT1G51580.1 33.333 195 110 6 16 204 248 428 3.26e-19 92.0
Msa0721120 AT5G46190.1 26.518 626 362 17 44 597 44 643 8.58e-47 174
Msa0721120 AT5G46190.1 28.070 171 107 3 43 210 316 473 4.51e-12 69.3
Msa0721120 AT5G46190.4 26.518 626 362 17 44 597 44 643 8.58e-47 174
Msa0721120 AT5G46190.4 28.070 171 107 3 43 210 316 473 4.51e-12 69.3
Msa0721120 AT5G46190.3 26.518 626 362 17 44 597 44 643 8.58e-47 174
Msa0721120 AT5G46190.3 28.070 171 107 3 43 210 316 473 4.51e-12 69.3
Msa0721120 AT5G53060.1 28.690 603 357 20 46 599 70 648 2.50e-46 173
Msa0721120 AT5G15270.3 31.579 475 291 13 46 506 52 506 1.10e-44 167
Msa0721120 AT5G15270.3 33.143 175 107 3 281 447 51 223 3.01e-18 88.6
Msa0721120 AT5G15270.2 31.579 475 291 13 46 506 52 506 1.33e-44 167
Msa0721120 AT5G15270.2 33.143 175 107 3 281 447 51 223 3.25e-18 88.6
Msa0721120 AT5G15270.1 31.579 475 291 13 46 506 52 506 1.33e-44 167
Msa0721120 AT5G15270.1 33.143 175 107 3 281 447 51 223 3.25e-18 88.6
Msa0721120 AT5G46190.2 24.888 671 361 18 44 597 44 688 1.51e-39 154
Msa0721120 AT5G46190.2 28.070 171 107 3 43 210 316 473 6.57e-12 68.9
Msa0721120 AT5G53060.3 29.371 429 260 11 46 446 70 483 1.65e-39 153
Msa0721120 AT5G53060.3 27.566 341 208 12 282 597 70 396 1.57e-12 70.9
Msa0721120 AT4G18375.2 24.267 614 361 19 44 597 36 605 2.86e-36 144
Msa0721120 AT5G09560.1 26.957 460 259 11 44 446 30 469 6.18e-31 128
Msa0721120 AT5G64390.2 37.500 192 102 3 42 219 45 232 1.07e-28 122
Msa0721120 AT5G64390.2 40.659 182 93 3 278 452 450 623 1.14e-27 119
Msa0721120 AT5G64390.2 27.551 196 116 4 22 210 440 616 7.72e-19 91.3
Msa0721120 AT5G64390.3 37.500 192 102 3 42 219 45 232 1.21e-28 122
Msa0721120 AT5G64390.3 40.659 182 93 3 278 452 450 623 1.24e-27 119
Msa0721120 AT5G64390.3 27.551 196 116 4 22 210 440 616 7.93e-19 91.3
Msa0721120 AT5G64390.3 57.143 84 35 1 518 601 776 858 9.24e-17 84.7
Msa0721120 AT5G64390.1 37.500 192 102 3 42 219 45 232 1.29e-28 122
Msa0721120 AT5G64390.1 40.659 182 93 3 278 452 450 623 1.27e-27 119
Msa0721120 AT5G64390.1 27.551 196 116 4 22 210 440 616 8.44e-19 91.3
Msa0721120 AT5G64390.1 56.977 86 36 1 516 601 765 849 3.02e-17 86.3
Msa0721120 AT4G18375.3 24.464 466 280 12 44 461 36 477 4.39e-27 115
Msa0721120 AT1G14170.2 28.434 415 252 10 46 446 13 396 1.15e-26 113
Msa0721120 AT1G14170.1 28.297 417 254 10 46 448 21 406 1.50e-26 113
Msa0721120 AT1G14170.3 28.297 417 254 10 46 448 46 431 1.92e-26 113
Msa0721120 AT4G26000.1 32.941 170 96 4 41 201 71 231 2.43e-18 89.0
Msa0721120 AT4G26000.1 27.467 375 218 14 258 595 50 407 1.54e-15 80.1
Msa0721120 AT3G04610.3 25.989 354 217 12 281 600 164 506 1.79e-12 70.5
Msa0721120 AT3G04610.3 27.841 176 111 4 40 208 159 325 3.03e-12 69.7
Msa0721120 AT3G04610.4 25.989 354 217 12 281 600 164 506 1.79e-12 70.5
Msa0721120 AT3G04610.4 27.841 176 111 4 40 208 159 325 3.03e-12 69.7
Msa0721120 AT3G04610.2 27.841 176 111 4 40 208 183 349 2.13e-12 70.5
Msa0721120 AT3G04610.2 32.530 166 107 4 281 444 188 350 4.70e-12 69.3
Msa0721120 AT3G04610.1 27.841 176 111 4 40 208 183 349 2.13e-12 70.5
Msa0721120 AT3G04610.1 32.530 166 107 4 281 444 188 350 4.70e-12 69.3

Find 195 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAAATTCCATAAATATT+TGG 0.071592 5_1:+17552193 None:intergenic
CCCAAATATTTATGGAATTT+TGG 0.101663 5_1:-17552194 Msa0721120:three_prime_UTR
CTAACAGTATCTTTATTTAA+AGG 0.143435 5_1:+17554063 None:intergenic
GTAAAATCACTTCTATAATT+AGG 0.149460 5_1:-17554140 Msa0721120:CDS
ATAATAGTGGTTCTAATATT+AGG 0.149891 5_1:-17557523 Msa0721120:CDS
GACTGACGATAGGGTTATTT+TGG 0.183479 5_1:-17557765 Msa0721120:CDS
TGATGGGTTGTGATGATTTA+AGG 0.192696 5_1:+17558109 None:intergenic
CTGCAACTCCCAAATATTTA+TGG 0.210265 5_1:-17552202 Msa0721120:three_prime_UTR
TGTTTCTGGGACCAGATTTC+AGG 0.214487 5_1:-17552847 Msa0721120:intron
CATGTCTTTGGTTCTGTTTA+TGG 0.268455 5_1:-17553503 Msa0721120:CDS
GTGGTGGTGGTTGTGGGTGG+TGG 0.271313 5_1:+17557975 None:intergenic
GCTCCCGTTGTACCGTTTAT+TGG 0.280445 5_1:-17552437 Msa0721120:three_prime_UTR
GGTGGGTTGATCGGAAGTTC+AGG 0.287245 5_1:-17557854 Msa0721120:CDS
ATTGTCTTTGCCCCTCCTTT+AGG 0.294721 5_1:-17555705 Msa0721120:CDS
CCAAAATTCCATAAATATTT+GGG 0.294768 5_1:+17552194 None:intergenic
TCCACTTGTACCGGTGCTGC+TGG 0.296182 5_1:+17552801 None:intergenic
GAGGGTTGAAATGGAAGTTC+TGG 0.297585 5_1:+17552118 None:intergenic
TAAAATCACTTCTATAATTA+GGG 0.310912 5_1:-17554139 Msa0721120:CDS
TCAAAGCTAAGCTTTGATAA+TGG 0.314714 5_1:+17552144 None:intergenic
GGAGGGAAGGTTGTGATATC+TGG 0.316287 5_1:-17552781 Msa0721120:CDS
TTGGCACATAGTTCTCAAAT+TGG 0.322433 5_1:-17557590 Msa0721120:CDS
TAATAGTGGTTCTAATATTA+GGG 0.324572 5_1:-17557522 Msa0721120:CDS
ATGCACAAGAAGGTGTTGTT+AGG 0.326843 5_1:-17557679 Msa0721120:CDS
ATTAAAAGCCTCGCAGTTAC+AGG 0.344522 5_1:+17555451 None:intergenic
TAATTCATGGTTACCTTCAA+TGG 0.351322 5_1:-17555913 Msa0721120:CDS
TTGAAGGTAACCATGAATTA+AGG 0.351702 5_1:+17555916 None:intergenic
CAAAGCTAAGCTTTGATAAT+GGG 0.352124 5_1:+17552145 None:intergenic
GGAAGAATATAAGTAATATT+AGG 0.355385 5_1:-17557547 Msa0721120:CDS
ATAGTCTCAGAGCATGTCTT+TGG 0.359338 5_1:-17553515 Msa0721120:CDS
TCTTGGATTGATACATTTGT+TGG 0.359625 5_1:-17552228 Msa0721120:three_prime_UTR
TTCAACGGCGGCGGAGAAAG+TGG 0.361395 5_1:+17558009 None:intergenic
TTTGTTGAAGTTAACGTTGA+TGG 0.362624 5_1:+17558092 None:intergenic
TTTATAGAGTCTAAGAAAAT+CGG 0.362814 5_1:-17552309 Msa0721120:three_prime_UTR
TGGTGAAAAGGAGATTTGTT+TGG 0.364184 5_1:+17558140 None:intergenic
GGATCGAAAAGGGATTGTTT+TGG 0.364192 5_1:-17557726 Msa0721120:CDS
ATAGATAAACCTTCCATTGA+AGG 0.366335 5_1:+17555900 None:intergenic
CTTTAAATAAAGATACTGTT+AGG 0.366560 5_1:-17554062 Msa0721120:CDS
TGCTTCAGCAAGCACCTCAT+TGG 0.367887 5_1:+17554104 None:intergenic
TAAAGTTCTTCCTTCAAAAC+AGG 0.372152 5_1:-17552660 Msa0721120:three_prime_UTR
GGTGAAAAGGAGATTTGTTT+GGG 0.372821 5_1:+17558141 None:intergenic
TCTGAAAACAACTGCTTGTC+CGG 0.382650 5_1:+17555815 None:intergenic
TCTCAAATTGGTGCTATTGT+TGG 0.387365 5_1:-17557578 Msa0721120:CDS
GGGGAAATGGTGAAGTTTAT+GGG 0.388390 5_1:-17557619 Msa0721120:CDS
TTAGTGTTATTCTGTGTGTT+TGG 0.388479 5_1:+17558235 None:intergenic
TTATCTGAAGCATTAGGAAT+TGG 0.392353 5_1:+17555328 None:intergenic
TTGTTTGATTGGCAGATAAC+TGG 0.395621 5_1:-17556089 Msa0721120:intron
TTCACTTCAAAATGATATGA+TGG 0.402197 5_1:-17552546 Msa0721120:three_prime_UTR
ATAGAGTGAGAAAGTTGAAA+TGG 0.403621 5_1:+17558176 None:intergenic
GCAGATAACTGGTGAAAGTT+TGG 0.404422 5_1:-17556078 Msa0721120:intron
AGCCTTGACTCAAAAGGTTC+CGG 0.414704 5_1:-17555834 Msa0721120:CDS
CTTGGATTGATACATTTGTT+GGG 0.415316 5_1:-17552227 Msa0721120:three_prime_UTR
CAGGAGAATTACTTGATTCA+AGG 0.415861 5_1:+17555560 None:intergenic
AGACAATAGAAGCACCAGTT+TGG 0.418301 5_1:+17555721 None:intergenic
AAAGTTGAAATGGAATGAAA+AGG 0.421641 5_1:+17558186 None:intergenic
TATTAACTGTCTCTCTTGAA+AGG 0.422015 5_1:-17552469 Msa0721120:three_prime_UTR
GTGGTGGTGGTGGTTGTGGG+TGG 0.422185 5_1:+17557972 None:intergenic
ACTGCGAGGATGCGGTGGTT+GGG 0.428519 5_1:-17557787 Msa0721120:CDS
ATATGTACACCAACCACTAA+TGG 0.431634 5_1:+17552629 None:intergenic
CTTGTATATTTGCAGAATGC+AGG 0.433629 5_1:-17553891 Msa0721120:intron
TCTCAGCTCCGGCGAGAAAC+CGG 0.437451 5_1:-17557821 Msa0721120:CDS
GCTGAAGATCACATTCGAAA+TGG 0.439609 5_1:-17555502 Msa0721120:CDS
GTCTGTCATTCGTCAACGGT+TGG 0.440219 5_1:-17557875 Msa0721120:CDS
AAGATCCTCATGTGTGTAAG+AGG 0.441328 5_1:+17555947 None:intergenic
ATTGGTGCTATTGTTGGAAA+AGG 0.443461 5_1:-17557572 Msa0721120:CDS
GCTTCAGCAAGCACCTCATT+GGG 0.447960 5_1:+17554105 None:intergenic
ACATCATTATCTGAAGCATT+AGG 0.450838 5_1:+17555322 None:intergenic
AAAAGGGTATTGTGAAGGAT+TGG 0.450912 5_1:+17558203 None:intergenic
AGGGGTGTATCAAACTAAAA+AGG 0.457022 5_1:-17553871 Msa0721120:CDS
CACTGCGAGGATGCGGTGGT+TGG 0.458500 5_1:-17557788 Msa0721120:CDS
CATTTATTGACTGGTAATGA+AGG 0.460032 5_1:-17555412 Msa0721120:CDS
GGGTCGATGTCGGATCGAAA+AGG 0.463768 5_1:-17557737 Msa0721120:CDS
GGGTCAGATCGCGTTTCGTT+TGG 0.464151 5_1:-17557897 Msa0721120:CDS
GTCTCTCTTGAAAGGGCTGT+GGG 0.465397 5_1:-17552461 Msa0721120:three_prime_UTR
AAAATGATGGTACCAATAAA+CGG 0.465560 5_1:+17552425 None:intergenic
CGCTCTTCATACTGACCTAA+AGG 0.469766 5_1:+17555690 None:intergenic
CAATTTAGATCGAATTAGAC+AGG 0.471269 5_1:-17553468 Msa0721120:intron
ATTGACTGGTAATGAAGGTC+AGG 0.471664 5_1:-17555407 Msa0721120:CDS
CACCACCGTCGTCGTTGAAA+CGG 0.472880 5_1:-17557955 Msa0721120:CDS
AAGTTGAAATGGAATGAAAA+GGG 0.475503 5_1:+17558187 None:intergenic
TCTTTATTTAAAGGAAAACT+TGG 0.475566 5_1:+17554072 None:intergenic
ACAGGAGGAGGTGCCATTAG+TGG 0.480446 5_1:-17552642 Msa0721120:three_prime_UTR
CGGTGGTTGGGACTGACGAT+AGG 0.481701 5_1:-17557775 Msa0721120:CDS
CAACTATTAACTCGTCTGAT+AGG 0.481981 5_1:-17555974 Msa0721120:CDS
GGTTCTGTTTATGGTGAAGA+TGG 0.482448 5_1:-17553494 Msa0721120:CDS
AAATGTGTCTGTTAGTCTAC+AGG 0.484540 5_1:+17552517 None:intergenic
TCAACGGCGGCGGAGAAAGT+GGG 0.487788 5_1:+17558010 None:intergenic
ATTAACTGTCTCTCTTGAAA+GGG 0.488222 5_1:-17552468 Msa0721120:three_prime_UTR
AGTAATATTAGGAATAATAG+TGG 0.489092 5_1:-17557536 Msa0721120:CDS
GGTCGATGTCGGATCGAAAA+GGG 0.489118 5_1:-17557736 Msa0721120:CDS
TGCACAAGAAGGTGTTGTTA+GGG 0.491683 5_1:-17557678 Msa0721120:CDS
ACCCGGTAGAAGTTTGAAAA+CGG 0.492942 5_1:+17557916 None:intergenic
CCCGGTAGAAGTTTGAAAAC+GGG 0.493933 5_1:+17557917 None:intergenic
GTCATTCGTCAACGGTTGGT+GGG 0.494900 5_1:-17557871 Msa0721120:CDS
TCAACGGTTGGTGGGTTGAT+CGG 0.497535 5_1:-17557863 Msa0721120:CDS
GTACCAATAAACGGTACAAC+GGG 0.499105 5_1:+17552434 None:intergenic
AGCACGTTACATTTATTGAC+TGG 0.502822 5_1:-17555421 Msa0721120:CDS
TGAGCTGCAAATGTTTGATC+AGG 0.504272 5_1:+17552754 None:intergenic
TTGTGGGTGGTGGTGATCAG+TGG 0.505493 5_1:+17557985 None:intergenic
CCACTTGTACCGGTGCTGCT+GGG 0.508804 5_1:+17552802 None:intergenic
TGTGGTAGAAACCTCGCAAA+AGG 0.510464 5_1:+17554006 None:intergenic
TTCAACGACGACGGTGGTGG+TGG 0.510744 5_1:+17557959 None:intergenic
AACTCTAGCCTTGACTCAAA+AGG 0.511462 5_1:-17555840 Msa0721120:CDS
GCAAGCACCTCATTGGGTAA+AGG 0.515760 5_1:+17554111 None:intergenic
TTGTTGAAGTTAACGTTGAT+GGG 0.518113 5_1:+17558093 None:intergenic
GGTGATTCCACAGCAGTGGC+TGG 0.521992 5_1:+17555472 None:intergenic
AACCTCGCAAAAGGAAAAGA+AGG 0.524946 5_1:+17554015 None:intergenic
TCTTCAAGATTGTCCACCGA+TGG 0.525660 5_1:-17556021 Msa0721120:CDS
AACGACGACGGTGGTGGTGG+TGG 0.525846 5_1:+17557962 None:intergenic
TTGTATATTTGCAGAATGCA+GGG 0.526025 5_1:-17553890 Msa0721120:intron
CAAAATCCACTGCGAGGATG+CGG 0.528018 5_1:-17557795 Msa0721120:CDS
GGTCAATCGTTTCTCAGCTC+CGG 0.528256 5_1:-17557832 Msa0721120:CDS
TGTCTCTCTTGAAAGGGCTG+TGG 0.528673 5_1:-17552462 Msa0721120:three_prime_UTR
AGATAATGATGTGGTAGTCC+AGG 0.528924 5_1:-17555311 Msa0721120:intron
TCATGGTTACCTTCAATGGA+AGG 0.529880 5_1:-17555909 Msa0721120:CDS
TGTCATTCGTCAACGGTTGG+TGG 0.530310 5_1:-17557872 Msa0721120:CDS
AGCAGCACCGGTACAAGTGG+AGG 0.530406 5_1:-17552799 Msa0721120:CDS
TTTGGGTGATAGGGAAATGG+AGG 0.531899 5_1:-17557708 Msa0721120:CDS
TGAAGTTTATGGGAAATTGT+TGG 0.532182 5_1:-17557609 Msa0721120:CDS
TAATATTATTCACAAGTTGA+AGG 0.532533 5_1:+17552587 None:intergenic
CCACCTTCACCTTCACATCA+AGG 0.534046 5_1:+17552274 None:intergenic
AACCTTCCCTCCACTTGTAC+CGG 0.534868 5_1:+17552792 None:intergenic
AGATATTTCATGCAGATCAC+TGG 0.535144 5_1:-17554192 Msa0721120:intron
TCGAGAATGTGGAACCTGGC+AGG 0.535373 5_1:-17553815 Msa0721120:intron
CTAGTTCGCCCTTGATGTGA+AGG 0.536213 5_1:-17552283 Msa0721120:three_prime_UTR
CGTTTCAACGACGACGGTGG+TGG 0.539720 5_1:+17557956 None:intergenic
TTTGGTCTGTCATTCGTCAA+CGG 0.540079 5_1:-17557879 Msa0721120:CDS
ATCAGTGGTTTCAACGGCGG+CGG 0.541422 5_1:+17558000 None:intergenic
CAGAATTGAGAGAAGTGAGT+GGG 0.546377 5_1:-17555378 Msa0721120:CDS
TTTGGTAATTGGGTCGATGT+CGG 0.546404 5_1:-17557747 Msa0721120:CDS
GGATAATCCTTTACCCAATG+AGG 0.546589 5_1:-17554118 Msa0721120:CDS
AAACTGCACAAGCAAGCTGA+TGG 0.546668 5_1:-17552708 Msa0721120:exon
TCTTCCTTCAAAACAGGAGG+AGG 0.549693 5_1:-17552654 Msa0721120:three_prime_UTR
CACCTTCACCTTCACATCAA+GGG 0.550150 5_1:+17552275 None:intergenic
CTATCAGACGAGTTAATAGT+TGG 0.551225 5_1:+17555975 None:intergenic
CCCAGCAGCACCGGTACAAG+TGG 0.551623 5_1:-17552802 Msa0721120:CDS
TAGGTCTTGGAGCAAAATGA+TGG 0.552186 5_1:+17552412 None:intergenic
GTGGGTTGATCGGAAGTTCA+GGG 0.553203 5_1:-17557853 Msa0721120:CDS
TGCACAAGCAAGCTGATGGA+TGG 0.556065 5_1:-17552704 Msa0721120:exon
GGTGCTATTGTTGGAAAAGG+AGG 0.558034 5_1:-17557569 Msa0721120:CDS
GTGCTATTGTTGGAAAAGGA+GGG 0.558057 5_1:-17557568 Msa0721120:CDS
CTTCAAGATTGTCCACCGAT+GGG 0.558317 5_1:-17556020 Msa0721120:CDS
AGAATAGCAGCATCTTGTGC+AGG 0.558969 5_1:+17555541 None:intergenic
TTAGCAGCACAATGTGGAGC+AGG 0.560665 5_1:+17557494 None:intergenic
AACGTAGCTGGTAGTGTGAT+CGG 0.561462 5_1:-17555777 Msa0721120:CDS
GGTGGTTGGGACTGACGATA+GGG 0.561685 5_1:-17557774 Msa0721120:CDS
AGTTCTTCCTTCAAAACAGG+AGG 0.563223 5_1:-17552657 Msa0721120:three_prime_UTR
AAACGAAACGCGATCTGACC+CGG 0.565332 5_1:+17557899 None:intergenic
TTCAAAGATACTTTGCCCAT+CGG 0.567264 5_1:+17556005 None:intergenic
AAAGATACTTTGCCCATCGG+TGG 0.569779 5_1:+17556008 None:intergenic
CTTTGCTCTAACAACGTAGC+TGG 0.572622 5_1:-17555789 Msa0721120:CDS
CTGGATTATACTGACCTGCC+AGG 0.574862 5_1:+17553801 None:intergenic
CACCGGTACAAGTGGAGGGA+AGG 0.577288 5_1:-17552794 Msa0721120:CDS
GGGGCTTGAAAGTGAGAAAG+GGG 0.582131 5_1:-17557639 Msa0721120:CDS
GTGGTGATCAGTGGTTTCAA+CGG 0.585651 5_1:+17557994 None:intergenic
TTAATCGAGAATGTGGAACC+TGG 0.593430 5_1:-17553819 Msa0721120:CDS
GAATGAAAAGGGTATTGTGA+AGG 0.597424 5_1:+17558198 None:intergenic
TATTTCATGCAGATCACTGG+TGG 0.600462 5_1:-17554189 Msa0721120:intron
CTCTGAGACTATAATCTCCA+CGG 0.600704 5_1:+17553526 None:intergenic
AATCCACTGCGAGGATGCGG+TGG 0.602490 5_1:-17557792 Msa0721120:CDS
CAGCTACGTTGTTAGAGCAA+AGG 0.602643 5_1:+17555790 None:intergenic
CTTCATACTGACCTAAAGGA+GGG 0.604930 5_1:+17555694 None:intergenic
CAACGGCGGCGGAGAAAGTG+GGG 0.607389 5_1:+17558011 None:intergenic
GCAGCACCGGTACAAGTGGA+GGG 0.608583 5_1:-17552798 Msa0721120:CDS
AAACAGACAACAAACGCTAA+CGG 0.610851 5_1:-17555864 Msa0721120:CDS
GCTGATATTCAACTACTGCA+TGG 0.611060 5_1:-17555355 Msa0721120:CDS
GAGGAGGTGCCATTAGTGGT+TGG 0.618086 5_1:-17552638 Msa0721120:three_prime_UTR
GAGGTTTCTAATGCACAAGA+AGG 0.618108 5_1:-17557689 Msa0721120:CDS
TCAGACGAGTTAATAGTTGG+CGG 0.619467 5_1:+17555978 None:intergenic
TACAGGTGATTCCACAGCAG+TGG 0.621359 5_1:+17555468 None:intergenic
TTCATACTGACCTAAAGGAG+GGG 0.624269 5_1:+17555695 None:intergenic
TCTTCATACTGACCTAAAGG+AGG 0.626783 5_1:+17555693 None:intergenic
GTATTTGATCCCAGCAGCAC+CGG 0.627371 5_1:-17552811 Msa0721120:CDS
CAACCACCGCATCCTCGCAG+TGG 0.627904 5_1:+17557789 None:intergenic
TTGTTCCGTTTCAACGACGA+CGG 0.631881 5_1:+17557950 None:intergenic
CGCCCTTGATGTGAAGGTGA+AGG 0.633841 5_1:-17552277 Msa0721120:three_prime_UTR
ATTTCAGCCAGCCACTGCTG+TGG 0.635973 5_1:-17555479 Msa0721120:CDS
TTCCGTTTCAACGACGACGG+TGG 0.641928 5_1:+17557953 None:intergenic
GTGATCAGTGGTTTCAACGG+CGG 0.644192 5_1:+17557997 None:intergenic
GTCAACCTCTTACACACATG+AGG 0.644733 5_1:-17555952 Msa0721120:CDS
TGTATATTTGCAGAATGCAG+GGG 0.651347 5_1:-17553889 Msa0721120:intron
GGTAACCATGAATTAAGGTG+AGG 0.652162 5_1:+17555921 None:intergenic
CCTTGATGTGAAGGTGAAGG+TGG 0.655085 5_1:-17552274 Msa0721120:three_prime_UTR
GGTACCAATAAACGGTACAA+CGG 0.660572 5_1:+17552433 None:intergenic
CACGGTAGTGTTTGTCACAG+TGG 0.663033 5_1:+17553544 None:intergenic
TGTGTCTGTTAGTCTACAGG+AGG 0.667705 5_1:+17552520 None:intergenic
TCTGTTTATGGTGAAGATGG+CGG 0.667726 5_1:-17553491 Msa0721120:CDS
TCAGAATTGAGAGAAGTGAG+TGG 0.669570 5_1:-17555379 Msa0721120:CDS
AGAATTGAGAGAAGTGAGTG+GGG 0.684487 5_1:-17555377 Msa0721120:CDS
TCGTCTTTAGCAGCACAATG+TGG 0.685014 5_1:+17557488 None:intergenic
TAATGCTTCAGATAATGATG+TGG 0.688915 5_1:-17555320 Msa0721120:CDS
GGGCTTGAAAGTGAGAAAGG+GGG 0.707750 5_1:-17557638 Msa0721120:CDS
ACATTGTGCTGCTAAAGACG+AGG 0.713313 5_1:-17557486 Msa0721120:CDS
CGGATGCAAAATCCACTGCG+AGG 0.717160 5_1:-17557801 Msa0721120:CDS
CACTGTGACAAACACTACCG+TGG 0.720924 5_1:-17553543 Msa0721120:CDS
TGGAATCACCTGTAACTGCG+AGG 0.722241 5_1:-17555459 Msa0721120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTATTATGTTATTATTAA+TGG - chr5_1:17553988-17554007 Msa0721120:intron 10.0%
!!! ACTTTATTTTATTTTTTGTT+AGG + chr5_1:17555448-17555467 None:intergenic 10.0%
!! TCTTTATAAATATTTACTAG+TGG + chr5_1:17553111-17553130 None:intergenic 15.0%
!! TTACTACTATTATTCTTATT+AGG - chr5_1:17553241-17553260 Msa0721120:intron 15.0%
!!! TTTTAGGAAAAATAAAATCA+GGG + chr5_1:17553518-17553537 None:intergenic 15.0%
!!! TTTTTAGGAAAAATAAAATC+AGG + chr5_1:17553519-17553538 None:intergenic 15.0%
!!! TCAAACTTTTGATTTTTTTT+AGG + chr5_1:17553534-17553553 None:intergenic 15.0%
!! ACATATATTAAATGCTTTAA+AGG + chr5_1:17553697-17553716 None:intergenic 15.0%
!!! TATATGTATGATTTGTTATA+CGG - chr5_1:17553710-17553729 Msa0721120:intron 15.0%
!!! ATATATTTTTTTCTCAATTG+TGG - chr5_1:17553756-17553775 Msa0721120:intron 15.0%
!! CAATAATAATAATGATACAA+AGG + chr5_1:17553909-17553928 None:intergenic 15.0%
!! TGTTATTATTATGAGAAATT+TGG - chr5_1:17553933-17553952 Msa0721120:intron 15.0%
!! GTTATTATTATGAGAAATTT+GGG - chr5_1:17553934-17553953 Msa0721120:intron 15.0%
!! AGATCAATAATAGAATATTA+TGG + chr5_1:17554778-17554797 None:intergenic 15.0%
!!! TTTATTTTCATAAACTTTTC+GGG + chr5_1:17555491-17555510 None:intergenic 15.0%
!!! GTTTATTTTCATAAACTTTT+CGG + chr5_1:17555492-17555511 None:intergenic 15.0%
!!! AAATGTACATAAATTGTTTT+CGG + chr5_1:17555514-17555533 None:intergenic 15.0%
!!! ACTTTTAAGTATTTTATTGA+GGG + chr5_1:17555619-17555638 None:intergenic 15.0%
!!! TACTTTTAAGTATTTTATTG+AGG + chr5_1:17555620-17555639 None:intergenic 15.0%
!! TAAAATCACTTCTATAATTA+GGG - chr5_1:17556243-17556262 Msa0721120:intron 15.0%
!! TACATAAAATAATATATTGC+TGG - chr5_1:17556716-17556735 Msa0721120:intron 15.0%
!!! AGTGATAATGATTTTAATTA+AGG - chr5_1:17557061-17557080 Msa0721120:intron 15.0%
!! AATTAAGGTAGAAAAAAAAA+AGG - chr5_1:17557076-17557095 Msa0721120:intron 15.0%
!! ATAATACTAATACAAATGAA+AGG - chr5_1:17557302-17557321 Msa0721120:intron 15.0%
!!! TAGATTATATTTGTTGTATA+TGG - chr5_1:17557352-17557371 Msa0721120:intron 15.0%
!!! CTCAATTTTTTATTTGTATA+AGG - chr5_1:17557462-17557481 Msa0721120:intron 15.0%
!!! TTTTATTTGTATAAGGATTA+TGG - chr5_1:17557469-17557488 Msa0721120:intron 15.0%
!! GGAAGAATATAAGTAATATT+AGG - chr5_1:17552835-17552854 Msa0721120:CDS 20.0%
!! AGTAATATTAGGAATAATAG+TGG - chr5_1:17552846-17552865 Msa0721120:intron 20.0%
!!! ATAATAGTGGTTCTAATATT+AGG - chr5_1:17552859-17552878 Msa0721120:intron 20.0%
!!! TAATAGTGGTTCTAATATTA+GGG - chr5_1:17552860-17552879 Msa0721120:intron 20.0%
!! TATAAATATTTACTAGTGGT+CGG + chr5_1:17553107-17553126 None:intergenic 20.0%
!! TTTAGGAAAAATAAAATCAG+GGG + chr5_1:17553517-17553536 None:intergenic 20.0%
!! TCAAAATACATTTGTAAAAG+TGG - chr5_1:17553599-17553618 Msa0721120:intron 20.0%
!!! AATTTTCAATCTTAACCAAA+AGG + chr5_1:17553790-17553809 None:intergenic 20.0%
!! AGAAAAATCAATAAAATGTG+CGG + chr5_1:17553854-17553873 None:intergenic 20.0%
!! CAATTTAAAGGTCTTTAATA+CGG - chr5_1:17555270-17555289 Msa0721120:intron 20.0%
!! AATTTAAAGGTCTTTAATAC+GGG - chr5_1:17555271-17555290 Msa0721120:intron 20.0%
!! GTAAAATCACTTCTATAATT+AGG - chr5_1:17556242-17556261 Msa0721120:intron 20.0%
!!! TCTTTATTTAAAGGAAAACT+TGG + chr5_1:17556313-17556332 None:intergenic 20.0%
!!! CTAACAGTATCTTTATTTAA+AGG + chr5_1:17556322-17556341 None:intergenic 20.0%
!! CTTTAAATAAAGATACTGTT+AGG - chr5_1:17556320-17556339 Msa0721120:intron 20.0%
!! AAAGATGGTTAAAATAAAGA+AGG + chr5_1:17556413-17556432 None:intergenic 20.0%
!! TGTAATAGAATATCAAAAGA+TGG + chr5_1:17556428-17556447 None:intergenic 20.0%
!!! TTCTCGATTAAATTTTTATG+TGG + chr5_1:17556554-17556573 None:intergenic 20.0%
!! TAAAAATTTAATCGAGAATG+TGG - chr5_1:17556556-17556575 Msa0721120:intron 20.0%
!! TAAACTTTCTTCTGATTATT+TGG - chr5_1:17557003-17557022 Msa0721120:intron 20.0%
!! ATAAAAAGGGTTAAAATGAA+AGG + chr5_1:17557246-17557265 None:intergenic 20.0%
!! AAACGGTTTAAACATAAAAA+GGG + chr5_1:17557259-17557278 None:intergenic 20.0%
!! TAAACGGTTTAAACATAAAA+AGG + chr5_1:17557260-17557279 None:intergenic 20.0%
!!! ATCTGCATTTTTTTGTTAAA+CGG + chr5_1:17557276-17557295 None:intergenic 20.0%
!!! TATTTGTTGTATATGGATTA+TGG - chr5_1:17557359-17557378 Msa0721120:intron 20.0%
!!! TAATATTATTCACAAGTTGA+AGG + chr5_1:17557798-17557817 None:intergenic 20.0%
!!! AAGGATGAACTTTTATAAAT+AGG + chr5_1:17557992-17558011 None:intergenic 20.0%
!! TTTATAGAGTCTAAGAAAAT+CGG - chr5_1:17558073-17558092 Msa0721120:five_prime_UTR 20.0%
!! CCAAAATTCCATAAATATTT+GGG + chr5_1:17558191-17558210 None:intergenic 20.0%
! AAGTTGAAATGGAATGAAAA+GGG + chr5_1:17552198-17552217 None:intergenic 25.0%
! AAAGTTGAAATGGAATGAAA+AGG + chr5_1:17552199-17552218 None:intergenic 25.0%
!! GATGATTTAAGGAATTTTCA+TGG + chr5_1:17552265-17552284 None:intergenic 25.0%
!!! AAGTTTGTGACTTTTGAAAT+GGG + chr5_1:17552324-17552343 None:intergenic 25.0%
!!! AAAGTTTGTGACTTTTGAAA+TGG + chr5_1:17552325-17552344 None:intergenic 25.0%
!!! ATAGGGTTATTTTGGTAATT+GGG - chr5_1:17552625-17552644 Msa0721120:three_prime_UTR 25.0%
! ATAAATATTTACTAGTGGTC+GGG + chr5_1:17553106-17553125 None:intergenic 25.0%
! ACTATTATTCTTATTAGGCA+CGG - chr5_1:17553246-17553265 Msa0721120:intron 25.0%
! CTGATATGAAATTCAATGAT+AGG - chr5_1:17553386-17553405 Msa0721120:intron 25.0%
! GGTATGACATTGAAAAATAA+CGG + chr5_1:17553412-17553431 None:intergenic 25.0%
!!! CTTGTTTTCTTCCTATATTT+TGG - chr5_1:17554027-17554046 Msa0721120:CDS 25.0%
! TGTATGTTATGTAAGTGAAT+TGG - chr5_1:17554071-17554090 Msa0721120:CDS 25.0%
!!! AACTTCAATTTTGAGATTGT+AGG - chr5_1:17554094-17554113 Msa0721120:CDS 25.0%
!! AGACATTCTTATTTATCACA+AGG + chr5_1:17554120-17554139 None:intergenic 25.0%
! GATAAATAAGAATGTCTAAG+TGG - chr5_1:17554123-17554142 Msa0721120:CDS 25.0%
!!! ATGACGGATCAAATTTAATA+TGG + chr5_1:17554170-17554189 None:intergenic 25.0%
! ATAGACATTCAGTTAAATGA+CGG + chr5_1:17554186-17554205 None:intergenic 25.0%
! GCAGTTCTTGAAAATATATT+TGG + chr5_1:17554219-17554238 None:intergenic 25.0%
!!! TTCTTGTTCTTTTGTTTGAT+TGG - chr5_1:17554282-17554301 Msa0721120:intron 25.0%
! TTGAGAGCCTTAAAAAAAAA+AGG + chr5_1:17555134-17555153 None:intergenic 25.0%
!! AAGTTATCCTTTTATCATGA+AGG + chr5_1:17555231-17555250 None:intergenic 25.0%
! TTGCTCAATTTCCAATTTAA+AGG - chr5_1:17555258-17555277 Msa0721120:intron 25.0%
! CGTATTAAAGACCTTTAAAT+TGG + chr5_1:17555272-17555291 None:intergenic 25.0%
! ACAGTTAAGTTAATTATGCT+TGG - chr5_1:17555296-17555315 Msa0721120:intron 25.0%
! GAAATATATTGGTGTAAGTT+AGG + chr5_1:17555337-17555356 None:intergenic 25.0%
! AACTTACACCAATATATTTC+AGG - chr5_1:17555337-17555356 Msa0721120:CDS 25.0%
!!! ATGTTCGTGTACTTATTTTA+TGG - chr5_1:17555703-17555722 Msa0721120:CDS 25.0%
! AATCCTTATTATATCTGCTT+CGG - chr5_1:17555735-17555754 Msa0721120:CDS 25.0%
! ATTTACATTCTTAACTAAGC+TGG + chr5_1:17555788-17555807 None:intergenic 25.0%
!! AATAAGTTGAAAACAACGTA+TGG - chr5_1:17556035-17556054 Msa0721120:CDS 25.0%
! AAACAGTAAGAAAAGATTGT+TGG + chr5_1:17556147-17556166 None:intergenic 25.0%
!! TAAGATTTTACTAAGGGAAA+GGG + chr5_1:17556640-17556659 None:intergenic 25.0%
!!! GGAATCTAAGATTTTACTAA+GGG + chr5_1:17556646-17556665 None:intergenic 25.0%
!!! AGGAATCTAAGATTTTACTA+AGG + chr5_1:17556647-17556666 None:intergenic 25.0%
! CTTCTAGATCTAATAATTAC+AGG + chr5_1:17556667-17556686 None:intergenic 25.0%
! GTGAATATTTATTATGCCAT+TGG + chr5_1:17556690-17556709 None:intergenic 25.0%
!!! TTTTTTCAACCTTTCTCTTT+TGG - chr5_1:17556785-17556804 Msa0721120:intron 25.0%
!! AAGATTTTACCAAAAGAGAA+AGG + chr5_1:17556797-17556816 None:intergenic 25.0%
!! TCTCTTTTGGTAAAATCTTT+TGG - chr5_1:17556798-17556817 Msa0721120:intron 25.0%
! AATTCATGTCATCTTTCTAA+GGG + chr5_1:17556956-17556975 None:intergenic 25.0%
! TAATTCATGTCATCTTTCTA+AGG + chr5_1:17556957-17556976 None:intergenic 25.0%
!!! ATGAATTATTTAATTTGCCG+TGG - chr5_1:17556969-17556988 Msa0721120:intron 25.0%
! TTTGAATCATTTGATCATTG+TGG - chr5_1:17557031-17557050 Msa0721120:intron 25.0%
! TACTGTAACTCCAAAAAATT+AGG - chr5_1:17557150-17557169 Msa0721120:intron 25.0%
! ACTGTAACTCCAAAAAATTA+GGG - chr5_1:17557151-17557170 Msa0721120:intron 25.0%
!!! GCTAAAATTCCCTAATTTTT+TGG + chr5_1:17557163-17557182 None:intergenic 25.0%
! GAAAGTCTAAACTTTGATAA+TGG + chr5_1:17557214-17557233 None:intergenic 25.0%
! TTCACTTCAAAATGATATGA+TGG - chr5_1:17557836-17557855 Msa0721120:CDS 25.0%
!! AGACACATTTTGTTAGATTT+TGG - chr5_1:17557878-17557897 Msa0721120:CDS 25.0%
! AAAATGATGGTACCAATAAA+CGG + chr5_1:17557960-17557979 None:intergenic 25.0%
!! GAACTTTTATAAATAGGTCT+TGG + chr5_1:17557986-17558005 None:intergenic 25.0%
!! CCCAAATATTTATGGAATTT+TGG - chr5_1:17558188-17558207 Msa0721120:five_prime_UTR 25.0%
! GCCAAAATTCCATAAATATT+TGG + chr5_1:17558192-17558211 None:intergenic 25.0%
! TTAGTGTTATTCTGTGTGTT+TGG + chr5_1:17552150-17552169 None:intergenic 30.0%
ATAGAGTGAGAAAGTTGAAA+TGG + chr5_1:17552209-17552228 None:intergenic 30.0%
! AAGGAATTTTCATGGTGAAA+AGG + chr5_1:17552257-17552276 None:intergenic 30.0%
TTGTTGAAGTTAACGTTGAT+GGG + chr5_1:17552292-17552311 None:intergenic 30.0%
TTTGTTGAAGTTAACGTTGA+TGG + chr5_1:17552293-17552312 None:intergenic 30.0%
!!! GATAGGGTTATTTTGGTAAT+TGG - chr5_1:17552624-17552643 Msa0721120:three_prime_UTR 30.0%
! TGTTGTTAGGGTTTTTGATA+GGG - chr5_1:17552716-17552735 Msa0721120:CDS 30.0%
TGAAGTTTATGGGAAATTGT+TGG - chr5_1:17552773-17552792 Msa0721120:CDS 30.0%
TATAAAAAAGGTTTGCACGA+TGG - chr5_1:17553159-17553178 Msa0721120:intron 30.0%
AATCAAAAGTTTGAACCCTT+TGG - chr5_1:17553540-17553559 Msa0721120:CDS 30.0%
ATCAAAAGTTTGAACCCTTT+GGG - chr5_1:17553541-17553560 Msa0721120:CDS 30.0%
! TTTGAAATCGATAGTATCAG+TGG + chr5_1:17553584-17553603 None:intergenic 30.0%
ATTTGTAAAAGTGGCTTGAT+CGG - chr5_1:17553608-17553627 Msa0721120:intron 30.0%
! ATTGTGGAATTCTTTCCTTT+TGG - chr5_1:17553772-17553791 Msa0721120:intron 30.0%
CTTACAAAAATCCTTGAGAA+AGG - chr5_1:17553872-17553891 Msa0721120:CDS 30.0%
TGATGTTCATGCCAAAATAT+AGG + chr5_1:17554041-17554060 None:intergenic 30.0%
AAATAAGAATGTCTAAGTGG+AGG - chr5_1:17554126-17554145 Msa0721120:CDS 30.0%
! TTTTTCCTCACCTTAATTCA+TGG - chr5_1:17554456-17554475 Msa0721120:intron 30.0%
TTGAAGGTAACCATGAATTA+AGG + chr5_1:17554469-17554488 None:intergenic 30.0%
TAATTCATGGTTACCTTCAA+TGG - chr5_1:17554469-17554488 Msa0721120:intron 30.0%
ATAGATAAACCTTCCATTGA+AGG + chr5_1:17554485-17554504 None:intergenic 30.0%
!!! AGAACTTTTGAAATCCAAAC+TGG - chr5_1:17554647-17554666 Msa0721120:intron 30.0%
AATTACTTGATTCAAGGTTC+TGG + chr5_1:17554819-17554838 None:intergenic 30.0%
! CATTTATTGACTGGTAATGA+AGG - chr5_1:17554970-17554989 Msa0721120:intron 30.0%
! TTATCTGAAGCATTAGGAAT+TGG + chr5_1:17555057-17555076 None:intergenic 30.0%
! ACATCATTATCTGAAGCATT+AGG + chr5_1:17555063-17555082 None:intergenic 30.0%
TAATGCTTCAGATAATGATG+TGG - chr5_1:17555062-17555081 Msa0721120:intron 30.0%
ACAAGATACATAATTGTACC+TGG + chr5_1:17555092-17555111 None:intergenic 30.0%
!!! AGCTACGCCTTTTTTTTTTA+AGG - chr5_1:17555124-17555143 Msa0721120:intron 30.0%
AAACAGCACCTGAAATATAT+TGG + chr5_1:17555348-17555367 None:intergenic 30.0%
!! AATATATTTCAGGTGCTGTT+TGG - chr5_1:17555347-17555366 Msa0721120:CDS 30.0%
ATTTCATAAGCTGTTTGCAT+AGG - chr5_1:17555530-17555549 Msa0721120:CDS 30.0%
! TATTTTATTGAGGGTCTGTT+TGG + chr5_1:17555610-17555629 None:intergenic 30.0%
AGCTATTGTATCCAACATAA+AGG - chr5_1:17555646-17555665 Msa0721120:intron 30.0%
ATAAGTACACGAACATTAGA+CGG + chr5_1:17555699-17555718 None:intergenic 30.0%
ATACCGAAGCAGATATAATA+AGG + chr5_1:17555741-17555760 None:intergenic 30.0%
!!! AAGGAAAAGAAGGTTTTTTG+CGG + chr5_1:17556360-17556379 None:intergenic 30.0%
!!! ATTACATCTCTTGTTTTCCA+AGG - chr5_1:17556442-17556461 Msa0721120:intron 30.0%
!!! TTACATCTCTTGTTTTCCAA+GGG - chr5_1:17556443-17556462 Msa0721120:intron 30.0%
AATCTTGTACTAAAAACCCT+TGG + chr5_1:17556462-17556481 None:intergenic 30.0%
TTGTATATTTGCAGAATGCA+GGG - chr5_1:17556492-17556511 Msa0721120:intron 30.0%
TAAAAAGGTCACAGAAAATG+TGG - chr5_1:17556526-17556545 Msa0721120:intron 30.0%
! CTAAGATTTTACTAAGGGAA+AGG + chr5_1:17556641-17556660 None:intergenic 30.0%
TTATTAGATCTAGAAGCCAA+TGG - chr5_1:17556671-17556690 Msa0721120:intron 30.0%
CAATTTAGATCGAATTAGAC+AGG - chr5_1:17556914-17556933 Msa0721120:intron 30.0%
!! ATTATTTAATTTGCCGTGGT+TGG - chr5_1:17556973-17556992 Msa0721120:intron 30.0%
!! TTATTTAATTTGCCGTGGTT+GGG - chr5_1:17556974-17556993 Msa0721120:intron 30.0%
TTGCACCAAGTGAAATTTAT+TGG - chr5_1:17557188-17557207 Msa0721120:intron 30.0%
AATGGCCAATAAATTTCACT+TGG + chr5_1:17557196-17557215 None:intergenic 30.0%
GACGGTTGTAAAATGTTTAT+TGG - chr5_1:17557407-17557426 Msa0721120:intron 30.0%
TAAAGTTCTTCCTTCAAAAC+AGG - chr5_1:17557722-17557741 Msa0721120:CDS 30.0%
TATTAACTGTCTCTCTTGAA+AGG - chr5_1:17557913-17557932 Msa0721120:CDS 30.0%
ATTAACTGTCTCTCTTGAAA+GGG - chr5_1:17557914-17557933 Msa0721120:CDS 30.0%
AGCTAAAAAAGCGAAGAAAA+AGG + chr5_1:17558011-17558030 None:intergenic 30.0%
TCTTGGATTGATACATTTGT+TGG - chr5_1:17558154-17558173 Msa0721120:five_prime_UTR 30.0%
CTTGGATTGATACATTTGTT+GGG - chr5_1:17558155-17558174 Msa0721120:five_prime_UTR 30.0%
! CAAAGCTAAGCTTTGATAAT+GGG + chr5_1:17558240-17558259 None:intergenic 30.0%
! TCAAAGCTAAGCTTTGATAA+TGG + chr5_1:17558241-17558260 None:intergenic 30.0%
!! AAAAGGGTATTGTGAAGGAT+TGG + chr5_1:17552182-17552201 None:intergenic 35.0%
!! GAATGAAAAGGGTATTGTGA+AGG + chr5_1:17552187-17552206 None:intergenic 35.0%
! GGTGAAAAGGAGATTTGTTT+GGG + chr5_1:17552244-17552263 None:intergenic 35.0%
! TGGTGAAAAGGAGATTTGTT+TGG + chr5_1:17552245-17552264 None:intergenic 35.0%
!! TGATGGGTTGTGATGATTTA+AGG + chr5_1:17552276-17552295 None:intergenic 35.0%
! GATCGAAAAGGGATTGTTTT+GGG - chr5_1:17552657-17552676 Msa0721120:three_prime_UTR 35.0%
!! GTGTTGTTAGGGTTTTTGAT+AGG - chr5_1:17552715-17552734 Msa0721120:CDS 35.0%
! TTAGGGTTTTTGATAGGGTT+TGG - chr5_1:17552721-17552740 Msa0721120:CDS 35.0%
! TAGGGTTTTTGATAGGGTTT+GGG - chr5_1:17552722-17552741 Msa0721120:CDS 35.0%
TTGGCACATAGTTCTCAAAT+TGG - chr5_1:17552792-17552811 Msa0721120:CDS 35.0%
!! TCTCAAATTGGTGCTATTGT+TGG - chr5_1:17552804-17552823 Msa0721120:CDS 35.0%
!! ATTGGTGCTATTGTTGGAAA+AGG - chr5_1:17552810-17552829 Msa0721120:CDS 35.0%
ATTAGTTGTTCTCCTTTGTC+TGG - chr5_1:17553036-17553055 Msa0721120:intron 35.0%
! CTATTTTACAATCGCATACG+TGG + chr5_1:17553359-17553378 None:intergenic 35.0%
! TTTTCAATGTCATACCACCT+AGG - chr5_1:17553416-17553435 Msa0721120:intron 35.0%
TTTCAATGTCATACCACCTA+GGG - chr5_1:17553417-17553436 Msa0721120:intron 35.0%
TTTGTAAAAGTGGCTTGATC+GGG - chr5_1:17553609-17553628 Msa0721120:intron 35.0%
AAATCCTTGAGAAAGGAGAT+TGG - chr5_1:17553879-17553898 Msa0721120:CDS 35.0%
ATAACCAATCTCCTTTCTCA+AGG + chr5_1:17553886-17553905 None:intergenic 35.0%
TACTTGACATGAATTCCACT+TGG + chr5_1:17553973-17553992 None:intergenic 35.0%
TCAGTTCAATGACAAGTGAA+TGG + chr5_1:17554252-17554271 None:intergenic 35.0%
TTGTTTGATTGGCAGATAAC+TGG - chr5_1:17554293-17554312 Msa0721120:intron 35.0%
TTCAAAGATACTTTGCCCAT+CGG + chr5_1:17554380-17554399 None:intergenic 35.0%
CTATCAGACGAGTTAATAGT+TGG + chr5_1:17554410-17554429 None:intergenic 35.0%
CAACTATTAACTCGTCTGAT+AGG - chr5_1:17554408-17554427 Msa0721120:intron 35.0%
AAACAGACAACAAACGCTAA+CGG - chr5_1:17554518-17554537 Msa0721120:intron 35.0%
CAGGAGAATTACTTGATTCA+AGG + chr5_1:17554825-17554844 None:intergenic 35.0%
AGCACGTTACATTTATTGAC+TGG - chr5_1:17554961-17554980 Msa0721120:intron 35.0%
CTGACATCCTTCATGATAAA+AGG - chr5_1:17555221-17555240 Msa0721120:intron 35.0%
TTCTCAAATAGACTCACAAG+TGG - chr5_1:17555555-17555574 Msa0721120:CDS 35.0%
ACAAATGAGGACCTTTATGT+TGG + chr5_1:17555660-17555679 None:intergenic 35.0%
CTTCCAGAAACTAACAAATG+AGG + chr5_1:17555673-17555692 None:intergenic 35.0%
! CATTAGTGCTTTTACTACTG+AGG - chr5_1:17555837-17555856 Msa0721120:CDS 35.0%
AGATATTTCATGCAGATCAC+TGG - chr5_1:17556190-17556209 Msa0721120:intron 35.0%
!!! AGGAAAAGAAGGTTTTTTGC+GGG + chr5_1:17556359-17556378 None:intergenic 35.0%
CTTGTATATTTGCAGAATGC+AGG - chr5_1:17556491-17556510 Msa0721120:intron 35.0%
TGTATATTTGCAGAATGCAG+GGG - chr5_1:17556493-17556512 Msa0721120:intron 35.0%
! AGGGGTGTATCAAACTAAAA+AGG - chr5_1:17556511-17556530 Msa0721120:intron 35.0%
GGGAGAAAAAATCACAGAAA+AGG + chr5_1:17556620-17556639 None:intergenic 35.0%
GTTGAAAAAAGATCAGAAGC+AGG + chr5_1:17556775-17556794 None:intergenic 35.0%
! TTGGTAAAATCTTTTGGCAG+AGG - chr5_1:17556804-17556823 Msa0721120:intron 35.0%
!! CATGTCTTTGGTTCTGTTTA+TGG - chr5_1:17556879-17556898 Msa0721120:intron 35.0%
CATTTGATCATTGTGGTGTT+TGG - chr5_1:17557038-17557057 Msa0721120:intron 35.0%
! ACATTTTACAACCGTCCTTA+AGG + chr5_1:17557403-17557422 None:intergenic 35.0%
!! ATATGCTCTAGTGTTGTTTC+TGG - chr5_1:17557521-17557540 Msa0721120:CDS 35.0%
!! TATGCTCTAGTGTTGTTTCT+GGG - chr5_1:17557522-17557541 Msa0721120:CDS 35.0%
ATATGTACACCAACCACTAA+TGG + chr5_1:17557756-17557775 None:intergenic 35.0%
! AAATGTGTCTGTTAGTCTAC+AGG + chr5_1:17557868-17557887 None:intergenic 35.0%
!!! GAGTTTTATTTCGAGTCTCT+TGG - chr5_1:17558137-17558156 Msa0721120:five_prime_UTR 35.0%
CTGCAACTCCCAAATATTTA+TGG - chr5_1:17558180-17558199 Msa0721120:five_prime_UTR 35.0%
! TGGGGTCTTGCATTTTTGAA+CGG + chr5_1:17552356-17552375 None:intergenic 40.0%
!! GTTTGAAAACGGGTCGTTTT+CGG + chr5_1:17552458-17552477 None:intergenic 40.0%
! ACCCGTTTTCAAACTTCTAC+CGG - chr5_1:17552464-17552483 Msa0721120:three_prime_UTR 40.0%
ACCCGGTAGAAGTTTGAAAA+CGG + chr5_1:17552469-17552488 None:intergenic 40.0%
TTTGGTCTGTCATTCGTCAA+CGG - chr5_1:17552503-17552522 Msa0721120:three_prime_UTR 40.0%
! GACTGACGATAGGGTTATTT+TGG - chr5_1:17552617-17552636 Msa0721120:three_prime_UTR 40.0%
! TTTGGTAATTGGGTCGATGT+CGG - chr5_1:17552635-17552654 Msa0721120:three_prime_UTR 40.0%
! GGATCGAAAAGGGATTGTTT+TGG - chr5_1:17552656-17552675 Msa0721120:three_prime_UTR 40.0%
!!! AAGGGATTGTTTTGGGTGAT+AGG - chr5_1:17552664-17552683 Msa0721120:three_prime_UTR 40.0%
!!! AGGGATTGTTTTGGGTGATA+GGG - chr5_1:17552665-17552684 Msa0721120:three_prime_UTR 40.0%
!! TGTTTTGGGTGATAGGGAAA+TGG - chr5_1:17552671-17552690 Msa0721120:three_prime_UTR 40.0%
GAGGTTTCTAATGCACAAGA+AGG - chr5_1:17552693-17552712 Msa0721120:exon 40.0%
!! ATGCACAAGAAGGTGTTGTT+AGG - chr5_1:17552703-17552722 Msa0721120:exon 40.0%
!! TGCACAAGAAGGTGTTGTTA+GGG - chr5_1:17552704-17552723 Msa0721120:exon 40.0%
! AGGGTTTTTGATAGGGTTTG+GGG - chr5_1:17552723-17552742 Msa0721120:CDS 40.0%
GGGGAAATGGTGAAGTTTAT+GGG - chr5_1:17552763-17552782 Msa0721120:CDS 40.0%
! GTGCTATTGTTGGAAAAGGA+GGG - chr5_1:17552814-17552833 Msa0721120:CDS 40.0%
AAAAAAGGTTTGCACGATGG+AGG - chr5_1:17553162-17553181 Msa0721120:intron 40.0%
TTAGGCACGGTAAATGCAAT+TGG - chr5_1:17553259-17553278 Msa0721120:intron 40.0%
TTCAATGTCATACCACCTAG+GGG - chr5_1:17553418-17553437 Msa0721120:intron 40.0%
! TTTAAGTTCAACCCCCTCAA+CGG + chr5_1:17553455-17553474 None:intergenic 40.0%
GAAATCGATAGTATCAGTGG+CGG + chr5_1:17553581-17553600 None:intergenic 40.0%
! GCAGAATTGGGGATTTTCAT+TGG - chr5_1:17553631-17553650 Msa0721120:intron 40.0%
GGATAAAGATTCATGCCAAG+TGG - chr5_1:17553955-17553974 Msa0721120:intron 40.0%
AATGTCTAAGTGGAGGTAAC+TGG - chr5_1:17554133-17554152 Msa0721120:CDS 40.0%
GCAGATAACTGGTGAAAGTT+TGG - chr5_1:17554304-17554323 Msa0721120:intron 40.0%
TCAGACGAGTTAATAGTTGG+CGG + chr5_1:17554407-17554426 None:intergenic 40.0%
AAGATCCTCATGTGTGTAAG+AGG + chr5_1:17554438-17554457 None:intergenic 40.0%
GGTAACCATGAATTAAGGTG+AGG + chr5_1:17554464-17554483 None:intergenic 40.0%
TCATGGTTACCTTCAATGGA+AGG - chr5_1:17554473-17554492 Msa0721120:intron 40.0%
!! AACTCTAGCCTTGACTCAAA+AGG - chr5_1:17554542-17554561 Msa0721120:intron 40.0%
TCTGAAAACAACTGCTTGTC+CGG + chr5_1:17554570-17554589 None:intergenic 40.0%
GTAGTGTGATCGGCAAAAAA+GGG - chr5_1:17554615-17554634 Msa0721120:intron 40.0%
!! AGACAATAGAAGCACCAGTT+TGG + chr5_1:17554664-17554683 None:intergenic 40.0%
TTCATACTGACCTAAAGGAG+GGG + chr5_1:17554690-17554709 None:intergenic 40.0%
CTTCATACTGACCTAAAGGA+GGG + chr5_1:17554691-17554710 None:intergenic 40.0%
TCTTCATACTGACCTAAAGG+AGG + chr5_1:17554692-17554711 None:intergenic 40.0%
!!! CGTCACTATTTCTGCTTTTG+AGG - chr5_1:17554718-17554737 Msa0721120:intron 40.0%
!! ACTTGATTCAAGGTTCTGGA+AGG + chr5_1:17554815-17554834 None:intergenic 40.0%
GCTGAAGATCACATTCGAAA+TGG - chr5_1:17554880-17554899 Msa0721120:intron 40.0%
ATTAAAAGCCTCGCAGTTAC+AGG + chr5_1:17554934-17554953 None:intergenic 40.0%
! ATTGACTGGTAATGAAGGTC+AGG - chr5_1:17554975-17554994 Msa0721120:intron 40.0%
TCAGAATTGAGAGAAGTGAG+TGG - chr5_1:17555003-17555022 Msa0721120:intron 40.0%
CAGAATTGAGAGAAGTGAGT+GGG - chr5_1:17555004-17555023 Msa0721120:intron 40.0%
AGAATTGAGAGAAGTGAGTG+GGG - chr5_1:17555005-17555024 Msa0721120:intron 40.0%
GCTGATATTCAACTACTGCA+TGG - chr5_1:17555027-17555046 Msa0721120:intron 40.0%
AGATAATGATGTGGTAGTCC+AGG - chr5_1:17555071-17555090 Msa0721120:intron 40.0%
! GGTCCTCATTTGTTAGTTTC+TGG - chr5_1:17555667-17555686 Msa0721120:CDS 40.0%
! TTACTACTGAGGCATTCATG+TGG - chr5_1:17555848-17555867 Msa0721120:CDS 40.0%
TATTTCATGCAGATCACTGG+TGG - chr5_1:17556193-17556212 Msa0721120:intron 40.0%
GGATAATCCTTTACCCAATG+AGG - chr5_1:17556264-17556283 Msa0721120:intron 40.0%
! AACCTTCTTTTCCTTTTGCG+AGG - chr5_1:17556365-17556384 Msa0721120:intron 40.0%
AACCTCGCAAAAGGAAAAGA+AGG + chr5_1:17556370-17556389 None:intergenic 40.0%
AAGAAGGTGAAGAATACCTG+TGG + chr5_1:17556397-17556416 None:intergenic 40.0%
TTAATCGAGAATGTGGAACC+TGG - chr5_1:17556563-17556582 Msa0721120:intron 40.0%
!! CTCTGAGACTATAATCTCCA+CGG + chr5_1:17556859-17556878 None:intergenic 40.0%
ATAGTCTCAGAGCATGTCTT+TGG - chr5_1:17556867-17556886 Msa0721120:intron 40.0%
GGTTCTGTTTATGGTGAAGA+TGG - chr5_1:17556888-17556907 Msa0721120:intron 40.0%
TCTGTTTATGGTGAAGATGG+CGG - chr5_1:17556891-17556910 Msa0721120:intron 40.0%
TAACATCTGCACCTGAAATC+TGG + chr5_1:17557549-17557568 None:intergenic 40.0%
TGAGCTGCAAATGTTTGATC+AGG + chr5_1:17557631-17557650 None:intergenic 40.0%
AGTTCTTCCTTCAAAACAGG+AGG - chr5_1:17557725-17557744 Msa0721120:CDS 40.0%
GTACCAATAAACGGTACAAC+GGG + chr5_1:17557951-17557970 None:intergenic 40.0%
GGTACCAATAAACGGTACAA+CGG + chr5_1:17557952-17557971 None:intergenic 40.0%
TAGGTCTTGGAGCAAAATGA+TGG + chr5_1:17557973-17557992 None:intergenic 40.0%
GTGGTGATCAGTGGTTTCAA+CGG + chr5_1:17552391-17552410 None:intergenic 45.0%
TTGTTCCGTTTCAACGACGA+CGG + chr5_1:17552435-17552454 None:intergenic 45.0%
CCCGGTAGAAGTTTGAAAAC+GGG + chr5_1:17552468-17552487 None:intergenic 45.0%
! CCCGTTTTCAAACTTCTACC+GGG - chr5_1:17552465-17552484 Msa0721120:three_prime_UTR 45.0%
TTTGGGTGATAGGGAAATGG+AGG - chr5_1:17552674-17552693 Msa0721120:three_prime_UTR 45.0%
! GGGTTTTTGATAGGGTTTGG+GGG - chr5_1:17552724-17552743 Msa0721120:CDS 45.0%
GAAAGTGAGAAAGGGGGAAA+TGG - chr5_1:17552750-17552769 Msa0721120:CDS 45.0%
GGGGGAAATGGTGAAGTTTA+TGG - chr5_1:17552762-17552781 Msa0721120:CDS 45.0%
!! GGTGCTATTGTTGGAAAAGG+AGG - chr5_1:17552813-17552832 Msa0721120:CDS 45.0%
TCGTCTTTAGCAGCACAATG+TGG + chr5_1:17552897-17552916 None:intergenic 45.0%
! ACATTGTGCTGCTAAAGACG+AGG - chr5_1:17552896-17552915 Msa0721120:intron 45.0%
CTCCTTTGTCTGGATTGAAC+CGG - chr5_1:17553046-17553065 Msa0721120:intron 45.0%
!! AGCTCAGTTGGTTTGAGCTA+AGG + chr5_1:17553082-17553101 None:intergenic 45.0%
TTAAGTTCAACCCCCTCAAC+GGG + chr5_1:17553454-17553473 None:intergenic 45.0%
AAGTTTGAACCCTTTGGGCT+AGG - chr5_1:17553546-17553565 Msa0721120:CDS 45.0%
AGTTTGAACCCTTTGGGCTA+GGG - chr5_1:17553547-17553566 Msa0721120:CDS 45.0%
TCTTCAAGATTGTCCACCGA+TGG - chr5_1:17554361-17554380 Msa0721120:intron 45.0%
CTTCAAGATTGTCCACCGAT+GGG - chr5_1:17554362-17554381 Msa0721120:intron 45.0%
AAAGATACTTTGCCCATCGG+TGG + chr5_1:17554377-17554396 None:intergenic 45.0%
GTCAACCTCTTACACACATG+AGG - chr5_1:17554430-17554449 Msa0721120:intron 45.0%
AGCCTTGACTCAAAAGGTTC+CGG - chr5_1:17554548-17554567 Msa0721120:intron 45.0%
CAGCTACGTTGTTAGAGCAA+AGG + chr5_1:17554595-17554614 None:intergenic 45.0%
CTTTGCTCTAACAACGTAGC+TGG - chr5_1:17554593-17554612 Msa0721120:intron 45.0%
! AACGTAGCTGGTAGTGTGAT+CGG - chr5_1:17554605-17554624 Msa0721120:intron 45.0%
GGTAGTGTGATCGGCAAAAA+AGG - chr5_1:17554614-17554633 Msa0721120:intron 45.0%
ATTGTCTTTGCCCCTCCTTT+AGG - chr5_1:17554677-17554696 Msa0721120:intron 45.0%
CGCTCTTCATACTGACCTAA+AGG + chr5_1:17554695-17554714 None:intergenic 45.0%
AGAATAGCAGCATCTTGTGC+AGG + chr5_1:17554844-17554863 None:intergenic 45.0%
TGTGGTAGAAACCTCGCAAA+AGG + chr5_1:17556379-17556398 None:intergenic 45.0%
! TTTTGCGAGGTTTCTACCAC+AGG - chr5_1:17556378-17556397 Msa0721120:intron 45.0%
CAGGTCAGTATAATCCAGCT+GGG - chr5_1:17556586-17556605 Msa0721120:intron 45.0%
AGTTTAACACAGCCCAACCA+CGG + chr5_1:17556989-17557008 None:intergenic 45.0%
! TATGGATTATGGTGTCCACG+AGG - chr5_1:17557370-17557389 Msa0721120:intron 45.0%
! ATGGATTATGGTGTCCACGA+GGG - chr5_1:17557371-17557390 Msa0721120:intron 45.0%
!! TGTTTCTGGGACCAGATTTC+AGG - chr5_1:17557535-17557554 Msa0721120:CDS 45.0%
AAACTGCACAAGCAAGCTGA+TGG - chr5_1:17557674-17557693 Msa0721120:CDS 45.0%
TCTTCCTTCAAAACAGGAGG+AGG - chr5_1:17557728-17557747 Msa0721120:CDS 45.0%
! TGTGTCTGTTAGTCTACAGG+AGG + chr5_1:17557865-17557884 None:intergenic 45.0%
CACCTTCACCTTCACATCAA+GGG + chr5_1:17558110-17558129 None:intergenic 45.0%
!! TATTATTACTATTAATTAAT+AGG - chr5_1:17552948-17552967 Msa0721120:intron 5.0%
!!! ATATTTATAAAGATATTTTA+TGG - chr5_1:17553118-17553137 Msa0721120:intron 5.0%
!!! TTTTTTATACATAATTTTTA+AGG + chr5_1:17553148-17553167 None:intergenic 5.0%
!! TTAAAAATTATGTATAAAAA+AGG - chr5_1:17553147-17553166 Msa0721120:intron 5.0%
GTGATCAGTGGTTTCAACGG+CGG + chr5_1:17552388-17552407 None:intergenic 50.0%
AAACGAAACGCGATCTGACC+CGG + chr5_1:17552486-17552505 None:intergenic 50.0%
GTCTGTCATTCGTCAACGGT+TGG - chr5_1:17552507-17552526 Msa0721120:three_prime_UTR 50.0%
TGTCATTCGTCAACGGTTGG+TGG - chr5_1:17552510-17552529 Msa0721120:three_prime_UTR 50.0%
GTCATTCGTCAACGGTTGGT+GGG - chr5_1:17552511-17552530 Msa0721120:three_prime_UTR 50.0%
!! TCAACGGTTGGTGGGTTGAT+CGG - chr5_1:17552519-17552538 Msa0721120:three_prime_UTR 50.0%
!! GTGGGTTGATCGGAAGTTCA+GGG - chr5_1:17552529-17552548 Msa0721120:three_prime_UTR 50.0%
GGTCAATCGTTTCTCAGCTC+CGG - chr5_1:17552550-17552569 Msa0721120:three_prime_UTR 50.0%
! TTTTGCATCCGGTTTCTCGC+CGG + chr5_1:17552572-17552591 None:intergenic 50.0%
!! CTCGCAGTGGATTTTGCATC+CGG + chr5_1:17552583-17552602 None:intergenic 50.0%
CAAAATCCACTGCGAGGATG+CGG - chr5_1:17552587-17552606 Msa0721120:three_prime_UTR 50.0%
GGTCGATGTCGGATCGAAAA+GGG - chr5_1:17552646-17552665 Msa0721120:three_prime_UTR 50.0%
TGGGGGCTTGAAAGTGAGAA+AGG - chr5_1:17552741-17552760 Msa0721120:CDS 50.0%
GGGGGCTTGAAAGTGAGAAA+GGG - chr5_1:17552742-17552761 Msa0721120:CDS 50.0%
GGGGCTTGAAAGTGAGAAAG+GGG - chr5_1:17552743-17552762 Msa0721120:CDS 50.0%
GGGCTTGAAAGTGAGAAAGG+GGG - chr5_1:17552744-17552763 Msa0721120:CDS 50.0%
TTAGCAGCACAATGTGGAGC+AGG + chr5_1:17552891-17552910 None:intergenic 50.0%
GTCCGGTTCAATCCAGACAA+AGG + chr5_1:17553051-17553070 None:intergenic 50.0%
GGTTTGAGCTAAGGAGTTCG+AGG + chr5_1:17553073-17553092 None:intergenic 50.0%
AATGTCATACCACCTAGGGG+AGG - chr5_1:17553421-17553440 Msa0721120:intron 50.0%
TAAGTTCAACCCCCTCAACG+GGG + chr5_1:17553453-17553472 None:intergenic 50.0%
ATCCAAGACCCTAGCCCAAA+GGG + chr5_1:17553558-17553577 None:intergenic 50.0%
TGGCTTGATCGGGCAGAATT+GGG - chr5_1:17553619-17553638 Msa0721120:intron 50.0%
!! GTCCGGAACCTTTTGAGTCA+AGG + chr5_1:17554553-17554572 None:intergenic 50.0%
TACAGGTGATTCCACAGCAG+TGG + chr5_1:17554917-17554936 None:intergenic 50.0%
TGGAATCACCTGTAACTGCG+AGG - chr5_1:17554923-17554942 Msa0721120:intron 50.0%
!! GAGCGCTTCTGAGATTGTCT+AGG + chr5_1:17556094-17556113 None:intergenic 50.0%
CCAGTGGCTGAGTTTCTTGT+CGG - chr5_1:17556117-17556136 Msa0721120:intron 50.0%
CAGTGGCTGAGTTTCTTGTC+GGG - chr5_1:17556118-17556137 Msa0721120:intron 50.0%
AGTGGCTGAGTTTCTTGTCG+GGG - chr5_1:17556119-17556138 Msa0721120:intron 50.0%
GCAAGCACCTCATTGGGTAA+AGG + chr5_1:17556274-17556293 None:intergenic 50.0%
GCTTCAGCAAGCACCTCATT+GGG + chr5_1:17556280-17556299 None:intergenic 50.0%
TGCTTCAGCAAGCACCTCAT+TGG + chr5_1:17556281-17556300 None:intergenic 50.0%
CTGGATTATACTGACCTGCC+AGG + chr5_1:17556584-17556603 None:intergenic 50.0%
GCAGGTCAGTATAATCCAGC+TGG - chr5_1:17556585-17556604 Msa0721120:intron 50.0%
CACGGTAGTGTTTGTCACAG+TGG + chr5_1:17556841-17556860 None:intergenic 50.0%
CACTGTGACAAACACTACCG+TGG - chr5_1:17556839-17556858 Msa0721120:intron 50.0%
GAGGGCAATCTCCTTAAGGA+CGG - chr5_1:17557389-17557408 Msa0721120:intron 50.0%
GTATTTGATCCCAGCAGCAC+CGG - chr5_1:17557571-17557590 Msa0721120:CDS 50.0%
AACCTTCCCTCCACTTGTAC+CGG + chr5_1:17557593-17557612 None:intergenic 50.0%
GGAGGGAAGGTTGTGATATC+TGG - chr5_1:17557601-17557620 Msa0721120:CDS 50.0%
TGCACAAGCAAGCTGATGGA+TGG - chr5_1:17557678-17557697 Msa0721120:CDS 50.0%
TGTCTCTCTTGAAAGGGCTG+TGG - chr5_1:17557920-17557939 Msa0721120:CDS 50.0%
GTCTCTCTTGAAAGGGCTGT+GGG - chr5_1:17557921-17557940 Msa0721120:CDS 50.0%
GCTCCCGTTGTACCGTTTAT+TGG - chr5_1:17557945-17557964 Msa0721120:CDS 50.0%
CTAGTTCGCCCTTGATGTGA+AGG - chr5_1:17558099-17558118 Msa0721120:five_prime_UTR 50.0%
CCACCTTCACCTTCACATCA+AGG + chr5_1:17558111-17558130 None:intergenic 50.0%
CCTTGATGTGAAGGTGAAGG+TGG - chr5_1:17558108-17558127 Msa0721120:five_prime_UTR 50.0%
ATCAGTGGTTTCAACGGCGG+CGG + chr5_1:17552385-17552404 None:intergenic 55.0%
! TTGTGGGTGGTGGTGATCAG+TGG + chr5_1:17552400-17552419 None:intergenic 55.0%
CACCACCGTCGTCGTTGAAA+CGG - chr5_1:17552427-17552446 Msa0721120:three_prime_UTR 55.0%
TTCCGTTTCAACGACGACGG+TGG + chr5_1:17552432-17552451 None:intergenic 55.0%
GGGTCAGATCGCGTTTCGTT+TGG - chr5_1:17552485-17552504 Msa0721120:three_prime_UTR 55.0%
!! GGTGGGTTGATCGGAAGTTC+AGG - chr5_1:17552528-17552547 Msa0721120:three_prime_UTR 55.0%
CGGATGCAAAATCCACTGCG+AGG - chr5_1:17552581-17552600 Msa0721120:three_prime_UTR 55.0%
GGTGGTTGGGACTGACGATA+GGG - chr5_1:17552608-17552627 Msa0721120:three_prime_UTR 55.0%
GGGTCGATGTCGGATCGAAA+AGG - chr5_1:17552645-17552664 Msa0721120:three_prime_UTR 55.0%
GAGCTAAGGAGTTCGAGGTC+CGG + chr5_1:17553068-17553087 None:intergenic 55.0%
TAGTGGTCGGGTAGCTCAGT+TGG + chr5_1:17553094-17553113 None:intergenic 55.0%
! AACCCTTTGGGCTAGGGTCT+TGG - chr5_1:17553553-17553572 Msa0721120:CDS 55.0%
GATCCAAGACCCTAGCCCAA+AGG + chr5_1:17553559-17553578 None:intergenic 55.0%
GTGGCTTGATCGGGCAGAAT+TGG - chr5_1:17553618-17553637 Msa0721120:intron 55.0%
GGCTTGATCGGGCAGAATTG+GGG - chr5_1:17553620-17553639 Msa0721120:intron 55.0%
ATTTCAGCCAGCCACTGCTG+TGG - chr5_1:17554903-17554922 Msa0721120:intron 55.0%
CCGACAAGAAACTCAGCCAC+TGG + chr5_1:17556120-17556139 None:intergenic 55.0%
TCGAGAATGTGGAACCTGGC+AGG - chr5_1:17556567-17556586 Msa0721120:intron 55.0%
! AAAAGGCGCATACTCCCAGC+TGG + chr5_1:17556603-17556622 None:intergenic 55.0%
CCTTAAGGAGATTGCCCTCG+TGG + chr5_1:17557388-17557407 None:intergenic 55.0%
CCACGAGGGCAATCTCCTTA+AGG - chr5_1:17557385-17557404 Msa0721120:intron 55.0%
!! GGCACCTCCTCCTGTTTTGA+AGG + chr5_1:17557735-17557754 None:intergenic 55.0%
!! ACAGGAGGAGGTGCCATTAG+TGG - chr5_1:17557740-17557759 Msa0721120:CDS 55.0%
!! GAGGAGGTGCCATTAGTGGT+TGG - chr5_1:17557744-17557763 Msa0721120:CDS 55.0%
CGCCCTTGATGTGAAGGTGA+AGG - chr5_1:17558105-17558124 Msa0721120:five_prime_UTR 55.0%
TCAACGGCGGCGGAGAAAGT+GGG + chr5_1:17552375-17552394 None:intergenic 60.0%
TTCAACGGCGGCGGAGAAAG+TGG + chr5_1:17552376-17552395 None:intergenic 60.0%
!! ACGGTGGTGGTGGTGGTTGT+GGG + chr5_1:17552416-17552435 None:intergenic 60.0%
! TTCAACGACGACGGTGGTGG+TGG + chr5_1:17552426-17552445 None:intergenic 60.0%
CGTTTCAACGACGACGGTGG+TGG + chr5_1:17552429-17552448 None:intergenic 60.0%
TCTCAGCTCCGGCGAGAAAC+CGG - chr5_1:17552561-17552580 Msa0721120:three_prime_UTR 60.0%
AATCCACTGCGAGGATGCGG+TGG - chr5_1:17552590-17552609 Msa0721120:three_prime_UTR 60.0%
ACTGCGAGGATGCGGTGGTT+GGG - chr5_1:17552595-17552614 Msa0721120:three_prime_UTR 60.0%
CGGTGGTTGGGACTGACGAT+AGG - chr5_1:17552607-17552626 Msa0721120:three_prime_UTR 60.0%
GTCATACCACCTAGGGGAGG+AGG - chr5_1:17553424-17553443 Msa0721120:intron 60.0%
GGTGATTCCACAGCAGTGGC+TGG + chr5_1:17554913-17554932 None:intergenic 60.0%
!! CTCAGAAGCGCTCATGCCAG+TGG - chr5_1:17556101-17556120 Msa0721120:intron 60.0%
!! CCACTTGTACCGGTGCTGCT+GGG + chr5_1:17557583-17557602 None:intergenic 60.0%
!! TCCACTTGTACCGGTGCTGC+TGG + chr5_1:17557584-17557603 None:intergenic 60.0%
!! AGCAGCACCGGTACAAGTGG+AGG - chr5_1:17557583-17557602 Msa0721120:CDS 60.0%
!! GCAGCACCGGTACAAGTGGA+GGG - chr5_1:17557584-17557603 Msa0721120:CDS 60.0%
CACCGGTACAAGTGGAGGGA+AGG - chr5_1:17557588-17557607 Msa0721120:CDS 60.0%
CAACGGCGGCGGAGAAAGTG+GGG + chr5_1:17552374-17552393 None:intergenic 65.0%
!! GTGGTGGTGGTTGTGGGTGG+TGG + chr5_1:17552410-17552429 None:intergenic 65.0%
!! GTGGTGGTGGTGGTTGTGGG+TGG + chr5_1:17552413-17552432 None:intergenic 65.0%
!! GACGGTGGTGGTGGTGGTTG+TGG + chr5_1:17552417-17552436 None:intergenic 65.0%
!! AACGACGACGGTGGTGGTGG+TGG + chr5_1:17552423-17552442 None:intergenic 65.0%
CAACCACCGCATCCTCGCAG+TGG + chr5_1:17552596-17552615 None:intergenic 65.0%
CACTGCGAGGATGCGGTGGT+TGG - chr5_1:17552594-17552613 Msa0721120:three_prime_UTR 65.0%
!! CCCAGCAGCACCGGTACAAG+TGG - chr5_1:17557580-17557599 Msa0721120:CDS 65.0%
GGAGGAGGCAGCCCCGTTGA+GGG - chr5_1:17553439-17553458 Msa0721120:intron 70.0%
GAGGAGGCAGCCCCGTTGAG+GGG - chr5_1:17553440-17553459 Msa0721120:intron 70.0%
AGGAGGCAGCCCCGTTGAGG+GGG - chr5_1:17553441-17553460 Msa0721120:intron 70.0%
GGGCTGCCTCCTCCCCTAGG+TGG + chr5_1:17553433-17553452 None:intergenic 75.0%
ACGGGGCTGCCTCCTCCCCT+AGG + chr5_1:17553436-17553455 None:intergenic 75.0%
GGGAGGAGGCAGCCCCGTTG+AGG - chr5_1:17553438-17553457 Msa0721120:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17552123 17558281 17552123 ID=Msa0721120;Name=Msa0721120
chr5_1 mRNA 17552123 17558281 17552123 ID=Msa0721120-mRNA-1;Parent=Msa0721120;Name=Msa0721120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=240|1|1|1|1|1|7|588|601
chr5_1 exon 17552123 17552854 17552123 ID=Msa0721120-mRNA-1:exon:6706;Parent=Msa0721120-mRNA-1
chr5_1 exon 17553469 17553580 17553469 ID=Msa0721120-mRNA-1:exon:6705;Parent=Msa0721120-mRNA-1
chr5_1 exon 17553816 17553898 17553816 ID=Msa0721120-mRNA-1:exon:6704;Parent=Msa0721120-mRNA-1
chr5_1 exon 17554005 17554199 17554005 ID=Msa0721120-mRNA-1:exon:6703;Parent=Msa0721120-mRNA-1
chr5_1 exon 17555312 17555584 17555312 ID=Msa0721120-mRNA-1:exon:6702;Parent=Msa0721120-mRNA-1
chr5_1 exon 17555665 17556096 17555665 ID=Msa0721120-mRNA-1:exon:6701;Parent=Msa0721120-mRNA-1
chr5_1 exon 17557475 17558281 17557475 ID=Msa0721120-mRNA-1:exon:6700;Parent=Msa0721120-mRNA-1
chr5_1 five_prime_UTR 17558042 17558281 17558042 ID=Msa0721120-mRNA-1:five_prime_utr;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17557475 17558041 17557475 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17555665 17556096 17555665 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17555312 17555584 17555312 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17554005 17554199 17554005 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17553816 17553898 17553816 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17553469 17553580 17553469 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 CDS 17552711 17552854 17552711 ID=Msa0721120-mRNA-1:cds;Parent=Msa0721120-mRNA-1
chr5_1 three_prime_UTR 17552123 17552710 17552123 ID=Msa0721120-mRNA-1:three_prime_utr;Parent=Msa0721120-mRNA-1
Gene Sequence

>Msa0721120

ATGCAAGACCCCACTTTCTCCGCCGCCGTTGAAACCACTGATCACCACCACCCACAACCACCACCACCACCGTCGTCGTTGAAACGGAACAACCGAAAACGACCCGTTTTCAAACTTCTACCGGGTCAGATCGCGTTTCGTTTGGTCTGTCATTCGTCAACGGTTGGTGGGTTGATCGGAAGTTCAGGGTCAATCGTTTCTCAGCTCCGGCGAGAAACCGGATGCAAAATCCACTGCGAGGATGCGGTGGTTGGGACTGACGATAGGGTTATTTTGGTAATTGGGTCGATGTCGGATCGAAAAGGGATTGTTTTGGGTGATAGGGAAATGGAGGTTTCTAATGCACAAGAAGGTGTTGTTAGGGTTTTTGATAGGGTTTGGGGGCTTGAAAGTGAGAAAGGGGGAAATGGTGAAGTTTATGGGAAATTGTTGGCACATAGTTCTCAAATTGGTGCTATTGTTGGAAAAGGAGGGAAGAATATAAGTAATATTAGGAATAATAGTGGTTCTAATATTAGGGTTTGTCCTGCTCCACATTGTGCTGCTAAAGACGAGGAGTTAATTCTTATAACTGGTGAAAGTTTGGCTGTAAAGAAAGCACTGATTTATGTATCTTATTGTCTTCAAGATTGTCCACCGATGGGCAAAGTATCTTTGAACACGCCGCCAACTATTAACTCGTCTGATAGGTCAACCTCTTACACACATGAGGATCTTTTTCCTCACCTTAATTCATGGTTACCTTCAATGGAAGGTTTATCTATAAACGATGCTTCAAAACAGACAACAAACGCTAACGGAAACTCTAGCCTTGACTCAAAAGGTTCCGGACAAGCAGTTGTTTTCAGACTCCTTTGCTCTAACAACGTAGCTGGTAGTGTGATCGGCAAAAAAGGGTCTATAGTCAGAACTTTTGAAATCCAAACTGGTGCTTCTATTGTCTTTGCCCCTCCTTTAGGTCAGTATGAAGAGCGCATCGTCACTATTTCTGCTTTTGAGAACCTTGAATCAAGTAATTCTCCTGCACAAGATGCTGCTATTCTTGTCTTCACTAGAATTGCTGAAGATCACATTCGAAATGGATTTCAGCCAGCCACTGCTGTGGAATCACCTGTAACTGCGAGGCTTTTAATCACAACAAGCACGTTACATTTATTGACTGGTAATGAAGGTCAGGTGATTTCAGAATTGAGAGAAGTGAGTGGGGCTGATATTCAACTACTGCATGGAGAGCCAATTCCTAATGCTTCAGATAATGATGTGGTAGTCCAGATCACTGGTGGATACAGATGCGTAGAAAATGCTCTACGTAAAATCACTTCTATAATTAGGGATAATCCTTTACCCAATGAGGTGCTTGCTGAAGCAAGAGTCAAACCAAGTTTTCCTTTAAATAAAGATACTGTTAGGAGTAAGTTCATTACCCGCAAAAAACCTTCTTTTCCTTTTGCGAGGTTTCTACCACAGAATGCAGGGGTGTATCAAACTAAAAAGGTCACAGAAAATGTGGAACCACATAAAAATTTAATCGAGAATGTGGAACCTGGCAGAGGAAACATTGTTGCCACTGTGACAAACACTACCGTGGAGATTATAGTCTCAGAGCATGTCTTTGGTTCTGTTTATGGTGAAGATGGCGGCAATTTAGATCGAATTAGACAGATTTCAGGTGCAGATGTTACTGTATTTGATCCCAGCAGCACCGGTACAAGTGGAGGGAAGGTTGTGATATCTGGAACACCTGATCAAACATTTGCAGCTCAGAGTTTGCTTCAAGCTTTCATTCAAACTGCACAAGCAAGCTGA
Protein sequence

>Msa0721120

MQDPTFSAAVETTDHHHPQPPPPPSSLKRNNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQIGAIVGKGGKNISNIRNNSGSNIRVCPAPHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRSTSYTHEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSLDSKGSGQAVVFRLLCSNNVAGSVIGKKGSIVRTFEIQTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAAILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELREVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLPNEVLAEARVKPSFPLNKDTVRSKFITRKKPSFPFARFLPQNAGVYQTKKVTENVEPHKNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS*