AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644330 MtrunA17_Chr4g0031511 96.743 307 10 0 1 307 1 307 0.0 614
Msa0644330 MtrunA17_Chr1g0187501 44.311 167 93 0 7 173 8 174 1.76e-47 161
Msa0644330 MtrunA17_Chr7g0214661 32.877 146 94 2 16 161 12 153 2.90e-18 85.5
Msa0644330 MtrunA17_Chr1g0151921 30.137 146 101 1 16 161 11 155 1.00e-17 83.6
Msa0644330 MtrunA17_Chr7g0214591 30.709 127 71 2 37 161 18 129 2.23e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644330 AT3G46540.1 57.471 261 84 7 1 248 13 259 8.92e-83 252
Msa0644330 AT3G46540.2 57.471 261 84 7 1 248 1 247 1.24e-82 251
Msa0644330 AT3G46540.3 54.222 225 77 6 36 248 1 211 1.45e-62 199
Msa0644330 AT1G08670.1 45.714 175 93 2 1 173 5 179 4.14e-48 161
Msa0644330 AT3G23350.2 43.931 173 95 1 5 175 7 179 1.16e-46 159
Msa0644330 AT3G23350.1 43.931 173 95 1 5 175 6 178 1.27e-46 159
Msa0644330 AT1G08670.2 41.803 122 70 1 53 173 1 122 1.78e-28 108
Msa0644330 AT2G43160.4 32.877 146 94 2 16 161 12 153 3.09e-18 85.5
Msa0644330 AT2G43160.3 32.877 146 94 2 16 161 12 153 3.62e-18 85.5
Msa0644330 AT2G43160.2 32.877 146 94 2 16 161 12 153 3.62e-18 85.5
Msa0644330 AT2G43160.5 32.877 146 94 2 16 161 12 153 3.62e-18 85.5
Msa0644330 AT2G43160.1 32.877 146 94 2 16 161 12 153 3.62e-18 85.5
Msa0644330 AT5G11710.2 28.082 146 104 1 16 161 11 155 3.11e-16 79.3
Msa0644330 AT5G11710.1 28.082 146 104 1 16 161 11 155 3.11e-16 79.3
Msa0644330 AT5G11710.3 28.082 146 104 1 16 161 11 155 3.11e-16 79.3
Msa0644330 AT3G59290.1 35.433 127 81 1 34 160 27 152 9.63e-16 78.2

Find 72 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCTCTGCTACACTTTC+TGG 0.104086 4_3:+48171715 None:intergenic
CATTTCTGTTGTTGAGTTAA+AGG 0.216373 4_3:+48170873 None:intergenic
TCAAGAGGTATTCAAGGTTT+TGG 0.289457 4_3:-48171228 Msa0644330:CDS
ATCAAGTTCTAAAGAAAATA+TGG 0.298192 4_3:-48171004 Msa0644330:CDS
TGAACTATGAAAATAGATAT+TGG 0.301860 4_3:-48170674 Msa0644330:three_prime_UTR
TGGAGAGTCAGAATCACTTT+TGG 0.312508 4_3:-48170953 Msa0644330:CDS
CTAAATTTGAAAAGAAGAAT+TGG 0.317894 4_3:-48171789 Msa0644330:CDS
CTTGCACAATGTATAAATAA+AGG 0.319237 4_3:+48170643 None:intergenic
ACCCGTTCTGATCAATATAT+TGG 0.319311 4_3:+48171653 None:intergenic
GACAATTTGCAGGTTCAATT+GGG 0.329268 4_3:-48171343 Msa0644330:intron
TTATAGAGATTCTACATAAA+AGG 0.331852 4_3:-48172076 Msa0644330:intron
TGACAATTTGCAGGTTCAAT+TGG 0.347533 4_3:-48171344 Msa0644330:intron
GTGAAGAAGAGGATTCTTCT+AGG 0.348170 4_3:-48170927 Msa0644330:CDS
ATTTCTGTTGTTGAGTTAAA+GGG 0.348433 4_3:+48170874 None:intergenic
ATCATCATCTTTGTATATCA+TGG 0.354388 4_3:+48171059 None:intergenic
AAGAAAATATGGAACCTAGT+AGG 0.369176 4_3:-48170993 Msa0644330:CDS
AAATCATTGCCAACCACATT+TGG 0.381019 4_3:-48171159 Msa0644330:CDS
AAGTTCCACACTTCCCTACT+AGG 0.387979 4_3:+48170979 None:intergenic
GAAGAGGATTCTTCTAGGTT+TGG 0.410457 4_3:-48170922 Msa0644330:CDS
AAAGAAACTGTGACCATTGA+AGG 0.415028 4_3:+48170697 None:intergenic
AAGAAAGAAACCAATGTAGA+AGG 0.418535 4_3:-48171254 Msa0644330:CDS
CTGATTTCTTTCTCACAGTT+AGG 0.420075 4_3:+48171319 None:intergenic
CTTGAGCATTTGTTGACTCA+TGG 0.422333 4_3:-48171739 Msa0644330:CDS
TCCAATATATTGATCAGAAC+GGG 0.423953 4_3:-48171654 Msa0644330:intron
TTGGTAGAACCTCCCTTCAA+TGG 0.430673 4_3:-48170710 Msa0644330:three_prime_UTR
CAATGATTTCTCGCGAAGAA+TGG 0.431381 4_3:+48171173 None:intergenic
ATGATAGAAGAGGCAACTAA+TGG 0.435665 4_3:-48172176 Msa0644330:CDS
TCCTTGCTTTCTGCTAGAGA+TGG 0.439226 4_3:-48170838 Msa0644330:CDS
AATCCATCTTTCTCAACCTT+CGG 0.447702 4_3:-48171093 Msa0644330:CDS
AGGTTATCAAGAGGTATTCA+AGG 0.457152 4_3:-48171234 Msa0644330:CDS
AGAAAATATGGAACCTAGTA+GGG 0.473708 4_3:-48170992 Msa0644330:CDS
GATCTGAGGGTTACAGTAGT+TGG 0.473866 4_3:+48172140 None:intergenic
CACAATCAAGGAATTGTAAG+AGG 0.479866 4_3:+48171762 None:intergenic
TCGCGAAGAATGGCTTGTGT+TGG 0.484587 4_3:+48171183 None:intergenic
CTCAAACAACTACGAAGATC+AGG 0.492009 4_3:-48171121 Msa0644330:CDS
CTCTTGATAACCTTCTACAT+TGG 0.492948 4_3:+48171244 None:intergenic
CTACCGAAGGTTGAGAAAGA+TGG 0.495400 4_3:+48171090 None:intergenic
AGGATTCTTCTAGGTTTGGT+AGG 0.500264 4_3:-48170918 Msa0644330:CDS
GTTACAGTAGTTGGTGCCCA+TGG 0.502809 4_3:+48172149 None:intergenic
AGGGAAGTGTGGAACTTGGA+TGG 0.503033 4_3:-48170973 Msa0644330:CDS
TAACAAGCTCACAGTTCTGC+AGG 0.506386 4_3:+48172332 None:intergenic
CAAATGCTCAAGCACAATCA+AGG 0.506589 4_3:+48171750 None:intergenic
GTAATGAAACTGTTGGAAGA+AGG 0.514149 4_3:-48171291 Msa0644330:CDS
TATATTGGAAACCTTTCAGC+TGG 0.516997 4_3:+48171668 None:intergenic
AGCCTTTGAAATTGATCTGA+GGG 0.520257 4_3:+48172127 None:intergenic
ATCTTCGTAGTTGTTTGAGT+CGG 0.532031 4_3:+48171125 None:intergenic
AGGCAACTAATGGAAATCCA+TGG 0.532106 4_3:-48172166 Msa0644330:CDS
AGAGAGAGTAATGAAACTGT+TGG 0.533509 4_3:-48171298 Msa0644330:CDS
TAGTAGGGAAGTGTGGAACT+TGG 0.538983 4_3:-48170977 Msa0644330:CDS
ATGTTTATTTCCTTCCTCAA+AGG 0.541875 4_3:+48172483 None:intergenic
ATATACAAAGATGATGATAG+TGG 0.542784 4_3:-48171054 Msa0644330:CDS
GCTAGAGATGGAATACTACA+AGG 0.551404 4_3:-48170826 Msa0644330:CDS
CAGCCTTTGAAATTGATCTG+AGG 0.552074 4_3:+48172126 None:intergenic
TTCCAATATATTGATCAGAA+CGG 0.554896 4_3:-48171655 Msa0644330:CDS
GATGTTATTGACCAGCTGAA+AGG 0.568995 4_3:-48171679 Msa0644330:CDS
TCCATCTCTAGCAGAAAGCA+AGG 0.572809 4_3:+48170837 None:intergenic
AATTTGAAAAGAAGAATTGG+AGG 0.586374 4_3:-48171786 Msa0644330:CDS
ACAATTTGCAGGTTCAATTG+GGG 0.587617 4_3:-48171342 Msa0644330:intron
TTGAGCTAGATGATTATAGG+AGG 0.590229 4_3:-48172100 Msa0644330:CDS
GGCAACTAATGGAAATCCAT+GGG 0.593719 4_3:-48172165 Msa0644330:CDS
TTTCTGTTGTTGAGTTAAAG+GGG 0.598418 4_3:+48170875 None:intergenic
AAGAAACTGTGACCATTGAA+GGG 0.602368 4_3:+48170698 None:intergenic
AACCCTCAGATCAATTTCAA+AGG 0.602620 4_3:-48172129 Msa0644330:CDS
ATTTGAAAAGAAGAATTGGA+GGG 0.607233 4_3:-48171785 Msa0644330:CDS
GGAATTACATCTACCAAATG+TGG 0.607897 4_3:+48171146 None:intergenic
TTACATCTACCAAATGTGGT+TGG 0.611221 4_3:+48171150 None:intergenic
TGGAACCTAGTAGGGAAGTG+TGG 0.613565 4_3:-48170984 Msa0644330:CDS
TGGACCAGAAAGTGTAGCAG+AGG 0.637626 4_3:-48171719 Msa0644330:CDS
CAATGTAGAAGGTTATCAAG+AGG 0.650694 4_3:-48171243 Msa0644330:CDS
CTCTTGAAGAATGATAGAAG+AGG 0.653152 4_3:-48172186 Msa0644330:intron
CTAGAGATGGAATACTACAA+GGG 0.670524 4_3:-48170825 Msa0644330:CDS
AAACTGTGACCATTGAAGGG+AGG 0.698389 4_3:+48170701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAGTAAAAAAAATA+AGG + chr4_3:48171535-48171554 None:intergenic 10.0%
!! AAAATTGAGTAAAAAAAATA+AGG + chr4_3:48171535-48171554 None:intergenic 10.0%
!!! TTTTTAGGTAAACAATTTTT+TGG + chr4_3:48171731-48171750 None:intergenic 15.0%
!! AATTGTTTACCTAAAAAATT+TGG - chr4_3:48171734-48171753 Msa0644330:CDS 15.0%
!!! TTTATCTATCATTATGTTTT+TGG - chr4_3:48172424-48172443 Msa0644330:CDS 15.0%
!!! TTTTTAGGTAAACAATTTTT+TGG + chr4_3:48171731-48171750 None:intergenic 15.0%
!! AATTGTTTACCTAAAAAATT+TGG - chr4_3:48171734-48171753 Msa0644330:CDS 15.0%
!!! TTTATCTATCATTATGTTTT+TGG - chr4_3:48172424-48172443 Msa0644330:CDS 15.0%
!!! TTTTTTGAATTCATAGAAAG+GGG + chr4_3:48170738-48170757 None:intergenic 20.0%
!!! GTTTTTTGAATTCATAGAAA+GGG + chr4_3:48170739-48170758 None:intergenic 20.0%
!!! TGTTTTTTGAATTCATAGAA+AGG + chr4_3:48170740-48170759 None:intergenic 20.0%
!! TTATAGAGATTCTACATAAA+AGG - chr4_3:48171077-48171096 Msa0644330:CDS 20.0%
!! ATGCTAAGTAAAAAAAATGA+GGG + chr4_3:48171115-48171134 None:intergenic 20.0%
!!! GATACAATTCTAAAATAGAT+TGG - chr4_3:48171341-48171360 Msa0644330:intron 20.0%
!! CTAAATTTGAAAAGAAGAAT+TGG - chr4_3:48171364-48171383 Msa0644330:intron 20.0%
!!! ATTCAATGACCAAATTTTTT+AGG + chr4_3:48171746-48171765 None:intergenic 20.0%
!!! ATCAAGTTCTAAAGAAAATA+TGG - chr4_3:48172149-48172168 Msa0644330:CDS 20.0%
!! TGAACTATGAAAATAGATAT+TGG - chr4_3:48172479-48172498 Msa0644330:five_prime_UTR 20.0%
!!! TTTTTTGAATTCATAGAAAG+GGG + chr4_3:48170738-48170757 None:intergenic 20.0%
!!! GTTTTTTGAATTCATAGAAA+GGG + chr4_3:48170739-48170758 None:intergenic 20.0%
!!! TGTTTTTTGAATTCATAGAA+AGG + chr4_3:48170740-48170759 None:intergenic 20.0%
!! TTATAGAGATTCTACATAAA+AGG - chr4_3:48171077-48171096 Msa0644330:CDS 20.0%
!! ATGCTAAGTAAAAAAAATGA+GGG + chr4_3:48171115-48171134 None:intergenic 20.0%
!!! GATACAATTCTAAAATAGAT+TGG - chr4_3:48171341-48171360 Msa0644330:intron 20.0%
!! CTAAATTTGAAAAGAAGAAT+TGG - chr4_3:48171364-48171383 Msa0644330:intron 20.0%
!!! ATTCAATGACCAAATTTTTT+AGG + chr4_3:48171746-48171765 None:intergenic 20.0%
!!! ATCAAGTTCTAAAGAAAATA+TGG - chr4_3:48172149-48172168 Msa0644330:CDS 20.0%
!! TGAACTATGAAAATAGATAT+TGG - chr4_3:48172479-48172498 Msa0644330:five_prime_UTR 20.0%
! TGCTAAGTAAAAAAAATGAG+GGG + chr4_3:48171114-48171133 None:intergenic 25.0%
! CATGCTAAGTAAAAAAAATG+AGG + chr4_3:48171116-48171135 None:intergenic 25.0%
!!! ATTTCCAAGGTTTTAAATTG+CGG - chr4_3:48171142-48171161 Msa0644330:CDS 25.0%
! TGTTACTAAATGAATCATGA+TGG - chr4_3:48171308-48171327 Msa0644330:CDS 25.0%
! AATTTGAAAAGAAGAATTGG+AGG - chr4_3:48171367-48171386 Msa0644330:intron 25.0%
! ATTTGAAAAGAAGAATTGGA+GGG - chr4_3:48171368-48171387 Msa0644330:intron 25.0%
! TTCCAATATATTGATCAGAA+CGG - chr4_3:48171498-48171517 Msa0644330:intron 25.0%
! AAGATATTATGACAATTTGC+AGG - chr4_3:48171800-48171819 Msa0644330:intron 25.0%
! ATCATCATCTTTGTATATCA+TGG + chr4_3:48172097-48172116 None:intergenic 25.0%
! ATATACAAAGATGATGATAG+TGG - chr4_3:48172099-48172118 Msa0644330:CDS 25.0%
! ATTTCTGTTGTTGAGTTAAA+GGG + chr4_3:48172282-48172301 None:intergenic 25.0%
! TGCTAAGTAAAAAAAATGAG+GGG + chr4_3:48171114-48171133 None:intergenic 25.0%
! CATGCTAAGTAAAAAAAATG+AGG + chr4_3:48171116-48171135 None:intergenic 25.0%
!!! ATTTCCAAGGTTTTAAATTG+CGG - chr4_3:48171142-48171161 Msa0644330:CDS 25.0%
! TGTTACTAAATGAATCATGA+TGG - chr4_3:48171308-48171327 Msa0644330:CDS 25.0%
! AATTTGAAAAGAAGAATTGG+AGG - chr4_3:48171367-48171386 Msa0644330:intron 25.0%
! ATTTGAAAAGAAGAATTGGA+GGG - chr4_3:48171368-48171387 Msa0644330:intron 25.0%
! TTCCAATATATTGATCAGAA+CGG - chr4_3:48171498-48171517 Msa0644330:intron 25.0%
! AAGATATTATGACAATTTGC+AGG - chr4_3:48171800-48171819 Msa0644330:intron 25.0%
! ATCATCATCTTTGTATATCA+TGG + chr4_3:48172097-48172116 None:intergenic 25.0%
! ATATACAAAGATGATGATAG+TGG - chr4_3:48172099-48172118 Msa0644330:CDS 25.0%
! ATTTCTGTTGTTGAGTTAAA+GGG + chr4_3:48172282-48172301 None:intergenic 25.0%
!!! CTCTTTTTTTCTATCCTTTG+AGG - chr4_3:48170656-48170675 Msa0644330:three_prime_UTR 30.0%
!!! TTTTTTCTATCCTTTGAGGA+AGG - chr4_3:48170660-48170679 Msa0644330:three_prime_UTR 30.0%
ATGTTTATTTCCTTCCTCAA+AGG + chr4_3:48170673-48170692 None:intergenic 30.0%
ATATCCAAAACTATAGCTCT+AGG - chr4_3:48170917-48170936 Msa0644330:CDS 30.0%
! AAATCCTAGAGCTATAGTTT+TGG + chr4_3:48170924-48170943 None:intergenic 30.0%
! CTTTTGAGCTAGATGATTAT+AGG - chr4_3:48171050-48171069 Msa0644330:CDS 30.0%
GCTAAGTAAAAAAAATGAGG+GGG + chr4_3:48171113-48171132 None:intergenic 30.0%
! GCAATTTAAAACCTTGGAAA+TGG + chr4_3:48171143-48171162 None:intergenic 30.0%
GCAATCAAATTCGATATATG+TGG - chr4_3:48171202-48171221 Msa0644330:CDS 30.0%
! CATCGAAAACAATTTTGTCA+TGG - chr4_3:48171238-48171257 Msa0644330:CDS 30.0%
TAGTAACAAAGAAGTGATCA+CGG + chr4_3:48171296-48171315 None:intergenic 30.0%
TCCAATATATTGATCAGAAC+GGG - chr4_3:48171499-48171518 Msa0644330:intron 30.0%
AAGAAAGAAACCAATGTAGA+AGG - chr4_3:48171899-48171918 Msa0644330:intron 30.0%
AAGAAAATATGGAACCTAGT+AGG - chr4_3:48172160-48172179 Msa0644330:CDS 30.0%
AGAAAATATGGAACCTAGTA+GGG - chr4_3:48172161-48172180 Msa0644330:CDS 30.0%
TTTCTGTTGTTGAGTTAAAG+GGG + chr4_3:48172281-48172300 None:intergenic 30.0%
CATTTCTGTTGTTGAGTTAA+AGG + chr4_3:48172283-48172302 None:intergenic 30.0%
!!! CTCTTTTTTTCTATCCTTTG+AGG - chr4_3:48170656-48170675 Msa0644330:three_prime_UTR 30.0%
!!! TTTTTTCTATCCTTTGAGGA+AGG - chr4_3:48170660-48170679 Msa0644330:three_prime_UTR 30.0%
ATGTTTATTTCCTTCCTCAA+AGG + chr4_3:48170673-48170692 None:intergenic 30.0%
ATATCCAAAACTATAGCTCT+AGG - chr4_3:48170917-48170936 Msa0644330:CDS 30.0%
! AAATCCTAGAGCTATAGTTT+TGG + chr4_3:48170924-48170943 None:intergenic 30.0%
! CTTTTGAGCTAGATGATTAT+AGG - chr4_3:48171050-48171069 Msa0644330:CDS 30.0%
GCTAAGTAAAAAAAATGAGG+GGG + chr4_3:48171113-48171132 None:intergenic 30.0%
! GCAATTTAAAACCTTGGAAA+TGG + chr4_3:48171143-48171162 None:intergenic 30.0%
GCAATCAAATTCGATATATG+TGG - chr4_3:48171202-48171221 Msa0644330:CDS 30.0%
! CATCGAAAACAATTTTGTCA+TGG - chr4_3:48171238-48171257 Msa0644330:CDS 30.0%
TAGTAACAAAGAAGTGATCA+CGG + chr4_3:48171296-48171315 None:intergenic 30.0%
TCCAATATATTGATCAGAAC+GGG - chr4_3:48171499-48171518 Msa0644330:intron 30.0%
AAGAAAGAAACCAATGTAGA+AGG - chr4_3:48171899-48171918 Msa0644330:intron 30.0%
AAGAAAATATGGAACCTAGT+AGG - chr4_3:48172160-48172179 Msa0644330:CDS 30.0%
AGAAAATATGGAACCTAGTA+GGG - chr4_3:48172161-48172180 Msa0644330:CDS 30.0%
TTTCTGTTGTTGAGTTAAAG+GGG + chr4_3:48172281-48172300 None:intergenic 30.0%
CATTTCTGTTGTTGAGTTAA+AGG + chr4_3:48172283-48172302 None:intergenic 30.0%
! CAGTCTTGATTTTCTCTTTG+AGG + chr4_3:48170775-48170794 None:intergenic 35.0%
CTCTTGAAGAATGATAGAAG+AGG - chr4_3:48170967-48170986 Msa0644330:CDS 35.0%
ATGATAGAAGAGGCAACTAA+TGG - chr4_3:48170977-48170996 Msa0644330:CDS 35.0%
AACCCTCAGATCAATTTCAA+AGG - chr4_3:48171024-48171043 Msa0644330:CDS 35.0%
!! AGCCTTTGAAATTGATCTGA+GGG + chr4_3:48171029-48171048 None:intergenic 35.0%
TTGAGCTAGATGATTATAGG+AGG - chr4_3:48171053-48171072 Msa0644330:CDS 35.0%
!!! GTGATCACGGTTTTAAAAGA+AGG + chr4_3:48171283-48171302 None:intergenic 35.0%
CACAATCAAGGAATTGTAAG+AGG + chr4_3:48171394-48171413 None:intergenic 35.0%
TATATTGGAAACCTTTCAGC+TGG + chr4_3:48171488-48171507 None:intergenic 35.0%
ACCCGTTCTGATCAATATAT+TGG + chr4_3:48171503-48171522 None:intergenic 35.0%
! GAATTTCTTCCAGTTGATAC+TGG - chr4_3:48171762-48171781 Msa0644330:CDS 35.0%
TGACAATTTGCAGGTTCAAT+TGG - chr4_3:48171809-48171828 Msa0644330:intron 35.0%
GACAATTTGCAGGTTCAATT+GGG - chr4_3:48171810-48171829 Msa0644330:intron 35.0%
ACAATTTGCAGGTTCAATTG+GGG - chr4_3:48171811-48171830 Msa0644330:intron 35.0%
CTGATTTCTTTCTCACAGTT+AGG + chr4_3:48171837-48171856 None:intergenic 35.0%
AGAGAGAGTAATGAAACTGT+TGG - chr4_3:48171855-48171874 Msa0644330:intron 35.0%
GTAATGAAACTGTTGGAAGA+AGG - chr4_3:48171862-48171881 Msa0644330:intron 35.0%
! CTCTTGATAACCTTCTACAT+TGG + chr4_3:48171912-48171931 None:intergenic 35.0%
CAATGTAGAAGGTTATCAAG+AGG - chr4_3:48171910-48171929 Msa0644330:intron 35.0%
!! AGGTTATCAAGAGGTATTCA+AGG - chr4_3:48171919-48171938 Msa0644330:intron 35.0%
!!! TCAAGAGGTATTCAAGGTTT+TGG - chr4_3:48171925-48171944 Msa0644330:intron 35.0%
AAATCATTGCCAACCACATT+TGG - chr4_3:48171994-48172013 Msa0644330:intron 35.0%
TTACATCTACCAAATGTGGT+TGG + chr4_3:48172006-48172025 None:intergenic 35.0%
GGAATTACATCTACCAAATG+TGG + chr4_3:48172010-48172029 None:intergenic 35.0%
ATCTTCGTAGTTGTTTGAGT+CGG + chr4_3:48172031-48172050 None:intergenic 35.0%
AATCCATCTTTCTCAACCTT+CGG - chr4_3:48172060-48172079 Msa0644330:intron 35.0%
! ACTTTTGGATTGTGAAGAAG+AGG - chr4_3:48172215-48172234 Msa0644330:intron 35.0%
CTAGAGATGGAATACTACAA+GGG - chr4_3:48172328-48172347 Msa0644330:intron 35.0%
AAGAAACTGTGACCATTGAA+GGG + chr4_3:48172458-48172477 None:intergenic 35.0%
AAAGAAACTGTGACCATTGA+AGG + chr4_3:48172459-48172478 None:intergenic 35.0%
! CAGTCTTGATTTTCTCTTTG+AGG + chr4_3:48170775-48170794 None:intergenic 35.0%
CTCTTGAAGAATGATAGAAG+AGG - chr4_3:48170967-48170986 Msa0644330:CDS 35.0%
ATGATAGAAGAGGCAACTAA+TGG - chr4_3:48170977-48170996 Msa0644330:CDS 35.0%
AACCCTCAGATCAATTTCAA+AGG - chr4_3:48171024-48171043 Msa0644330:CDS 35.0%
!! AGCCTTTGAAATTGATCTGA+GGG + chr4_3:48171029-48171048 None:intergenic 35.0%
TTGAGCTAGATGATTATAGG+AGG - chr4_3:48171053-48171072 Msa0644330:CDS 35.0%
!!! GTGATCACGGTTTTAAAAGA+AGG + chr4_3:48171283-48171302 None:intergenic 35.0%
CACAATCAAGGAATTGTAAG+AGG + chr4_3:48171394-48171413 None:intergenic 35.0%
TATATTGGAAACCTTTCAGC+TGG + chr4_3:48171488-48171507 None:intergenic 35.0%
ACCCGTTCTGATCAATATAT+TGG + chr4_3:48171503-48171522 None:intergenic 35.0%
! GAATTTCTTCCAGTTGATAC+TGG - chr4_3:48171762-48171781 Msa0644330:CDS 35.0%
TGACAATTTGCAGGTTCAAT+TGG - chr4_3:48171809-48171828 Msa0644330:intron 35.0%
GACAATTTGCAGGTTCAATT+GGG - chr4_3:48171810-48171829 Msa0644330:intron 35.0%
ACAATTTGCAGGTTCAATTG+GGG - chr4_3:48171811-48171830 Msa0644330:intron 35.0%
CTGATTTCTTTCTCACAGTT+AGG + chr4_3:48171837-48171856 None:intergenic 35.0%
AGAGAGAGTAATGAAACTGT+TGG - chr4_3:48171855-48171874 Msa0644330:intron 35.0%
GTAATGAAACTGTTGGAAGA+AGG - chr4_3:48171862-48171881 Msa0644330:intron 35.0%
! CTCTTGATAACCTTCTACAT+TGG + chr4_3:48171912-48171931 None:intergenic 35.0%
CAATGTAGAAGGTTATCAAG+AGG - chr4_3:48171910-48171929 Msa0644330:intron 35.0%
!! AGGTTATCAAGAGGTATTCA+AGG - chr4_3:48171919-48171938 Msa0644330:intron 35.0%
!!! TCAAGAGGTATTCAAGGTTT+TGG - chr4_3:48171925-48171944 Msa0644330:intron 35.0%
AAATCATTGCCAACCACATT+TGG - chr4_3:48171994-48172013 Msa0644330:intron 35.0%
TTACATCTACCAAATGTGGT+TGG + chr4_3:48172006-48172025 None:intergenic 35.0%
GGAATTACATCTACCAAATG+TGG + chr4_3:48172010-48172029 None:intergenic 35.0%
ATCTTCGTAGTTGTTTGAGT+CGG + chr4_3:48172031-48172050 None:intergenic 35.0%
AATCCATCTTTCTCAACCTT+CGG - chr4_3:48172060-48172079 Msa0644330:intron 35.0%
! ACTTTTGGATTGTGAAGAAG+AGG - chr4_3:48172215-48172234 Msa0644330:intron 35.0%
CTAGAGATGGAATACTACAA+GGG - chr4_3:48172328-48172347 Msa0644330:intron 35.0%
AAGAAACTGTGACCATTGAA+GGG + chr4_3:48172458-48172477 None:intergenic 35.0%
AAAGAAACTGTGACCATTGA+AGG + chr4_3:48172459-48172478 None:intergenic 35.0%
AGGCAACTAATGGAAATCCA+TGG - chr4_3:48170987-48171006 Msa0644330:CDS 40.0%
GGCAACTAATGGAAATCCAT+GGG - chr4_3:48170988-48171007 Msa0644330:CDS 40.0%
!! CAGCCTTTGAAATTGATCTG+AGG + chr4_3:48171030-48171049 None:intergenic 40.0%
TAGCATGTTCACCATTTCCA+AGG - chr4_3:48171129-48171148 Msa0644330:CDS 40.0%
CAAATGCTCAAGCACAATCA+AGG + chr4_3:48171406-48171425 None:intergenic 40.0%
!! CTTGAGCATTTGTTGACTCA+TGG - chr4_3:48171414-48171433 Msa0644330:intron 40.0%
AATTCCTCTGCTACACTTTC+TGG + chr4_3:48171441-48171460 None:intergenic 40.0%
GATGTTATTGACCAGCTGAA+AGG - chr4_3:48171474-48171493 Msa0644330:intron 40.0%
GTGAAAAGGACCTGATAATC+TGG + chr4_3:48171688-48171707 None:intergenic 40.0%
! AGGTCCTTTTCACCTAGTAA+AGG - chr4_3:48171695-48171714 Msa0644330:CDS 40.0%
! TCCTTTTCACCTAGTAAAGG+AGG - chr4_3:48171698-48171717 Msa0644330:CDS 40.0%
! CCTTTTCACCTAGTAAAGGA+GGG - chr4_3:48171699-48171718 Msa0644330:CDS 40.0%
!! GGTTTTAACCCTCCTTTACT+AGG + chr4_3:48171710-48171729 None:intergenic 40.0%
CAATGATTTCTCGCGAAGAA+TGG + chr4_3:48171983-48172002 None:intergenic 40.0%
CTCAAACAACTACGAAGATC+AGG - chr4_3:48172032-48172051 Msa0644330:intron 40.0%
! TGGAGAGTCAGAATCACTTT+TGG - chr4_3:48172200-48172219 Msa0644330:intron 40.0%
GTGAAGAAGAGGATTCTTCT+AGG - chr4_3:48172226-48172245 Msa0644330:intron 40.0%
GAAGAGGATTCTTCTAGGTT+TGG - chr4_3:48172231-48172250 Msa0644330:intron 40.0%
! AGGATTCTTCTAGGTTTGGT+AGG - chr4_3:48172235-48172254 Msa0644330:intron 40.0%
GCTAGAGATGGAATACTACA+AGG - chr4_3:48172327-48172346 Msa0644330:intron 40.0%
AGGCAACTAATGGAAATCCA+TGG - chr4_3:48170987-48171006 Msa0644330:CDS 40.0%
GGCAACTAATGGAAATCCAT+GGG - chr4_3:48170988-48171007 Msa0644330:CDS 40.0%
!! CAGCCTTTGAAATTGATCTG+AGG + chr4_3:48171030-48171049 None:intergenic 40.0%
TAGCATGTTCACCATTTCCA+AGG - chr4_3:48171129-48171148 Msa0644330:CDS 40.0%
CAAATGCTCAAGCACAATCA+AGG + chr4_3:48171406-48171425 None:intergenic 40.0%
!! CTTGAGCATTTGTTGACTCA+TGG - chr4_3:48171414-48171433 Msa0644330:intron 40.0%
AATTCCTCTGCTACACTTTC+TGG + chr4_3:48171441-48171460 None:intergenic 40.0%
GATGTTATTGACCAGCTGAA+AGG - chr4_3:48171474-48171493 Msa0644330:intron 40.0%
GTGAAAAGGACCTGATAATC+TGG + chr4_3:48171688-48171707 None:intergenic 40.0%
! AGGTCCTTTTCACCTAGTAA+AGG - chr4_3:48171695-48171714 Msa0644330:CDS 40.0%
! TCCTTTTCACCTAGTAAAGG+AGG - chr4_3:48171698-48171717 Msa0644330:CDS 40.0%
! CCTTTTCACCTAGTAAAGGA+GGG - chr4_3:48171699-48171718 Msa0644330:CDS 40.0%
!! GGTTTTAACCCTCCTTTACT+AGG + chr4_3:48171710-48171729 None:intergenic 40.0%
CAATGATTTCTCGCGAAGAA+TGG + chr4_3:48171983-48172002 None:intergenic 40.0%
CTCAAACAACTACGAAGATC+AGG - chr4_3:48172032-48172051 Msa0644330:intron 40.0%
! TGGAGAGTCAGAATCACTTT+TGG - chr4_3:48172200-48172219 Msa0644330:intron 40.0%
GTGAAGAAGAGGATTCTTCT+AGG - chr4_3:48172226-48172245 Msa0644330:intron 40.0%
GAAGAGGATTCTTCTAGGTT+TGG - chr4_3:48172231-48172250 Msa0644330:intron 40.0%
! AGGATTCTTCTAGGTTTGGT+AGG - chr4_3:48172235-48172254 Msa0644330:intron 40.0%
GCTAGAGATGGAATACTACA+AGG - chr4_3:48172327-48172346 Msa0644330:intron 40.0%
!!! AGGGGTGCTCATTTTGCTAT+TGG + chr4_3:48170720-48170739 None:intergenic 45.0%
TAACAAGCTCACAGTTCTGC+AGG + chr4_3:48170824-48170843 None:intergenic 45.0%
GATCTGAGGGTTACAGTAGT+TGG + chr4_3:48171016-48171035 None:intergenic 45.0%
! GCGACCGCAATTTAAAACCT+TGG + chr4_3:48171149-48171168 None:intergenic 45.0%
CGAGCAAACTCCAGATTATC+AGG - chr4_3:48171675-48171694 Msa0644330:CDS 45.0%
CCCTCCTTTACTAGGTGAAA+AGG + chr4_3:48171702-48171721 None:intergenic 45.0%
CTACCGAAGGTTGAGAAAGA+TGG + chr4_3:48172066-48172085 None:intergenic 45.0%
AAGTTCCACACTTCCCTACT+AGG + chr4_3:48172177-48172196 None:intergenic 45.0%
! TAGTAGGGAAGTGTGGAACT+TGG - chr4_3:48172176-48172195 Msa0644330:CDS 45.0%
TCCTTGCTTTCTGCTAGAGA+TGG - chr4_3:48172315-48172334 Msa0644330:intron 45.0%
TCCATCTCTAGCAGAAAGCA+AGG + chr4_3:48172319-48172338 None:intergenic 45.0%
TTGGTAGAACCTCCCTTCAA+TGG - chr4_3:48172443-48172462 Msa0644330:exon 45.0%
AAACTGTGACCATTGAAGGG+AGG + chr4_3:48172455-48172474 None:intergenic 45.0%
!!! AGGGGTGCTCATTTTGCTAT+TGG + chr4_3:48170720-48170739 None:intergenic 45.0%
TAACAAGCTCACAGTTCTGC+AGG + chr4_3:48170824-48170843 None:intergenic 45.0%
GATCTGAGGGTTACAGTAGT+TGG + chr4_3:48171016-48171035 None:intergenic 45.0%
! GCGACCGCAATTTAAAACCT+TGG + chr4_3:48171149-48171168 None:intergenic 45.0%
CGAGCAAACTCCAGATTATC+AGG - chr4_3:48171675-48171694 Msa0644330:CDS 45.0%
CCCTCCTTTACTAGGTGAAA+AGG + chr4_3:48171702-48171721 None:intergenic 45.0%
CTACCGAAGGTTGAGAAAGA+TGG + chr4_3:48172066-48172085 None:intergenic 45.0%
AAGTTCCACACTTCCCTACT+AGG + chr4_3:48172177-48172196 None:intergenic 45.0%
! TAGTAGGGAAGTGTGGAACT+TGG - chr4_3:48172176-48172195 Msa0644330:CDS 45.0%
TCCTTGCTTTCTGCTAGAGA+TGG - chr4_3:48172315-48172334 Msa0644330:intron 45.0%
TCCATCTCTAGCAGAAAGCA+AGG + chr4_3:48172319-48172338 None:intergenic 45.0%
TTGGTAGAACCTCCCTTCAA+TGG - chr4_3:48172443-48172462 Msa0644330:exon 45.0%
AAACTGTGACCATTGAAGGG+AGG + chr4_3:48172455-48172474 None:intergenic 45.0%
! GTTACAGTAGTTGGTGCCCA+TGG + chr4_3:48171007-48171026 None:intergenic 50.0%
! TGGACCAGAAAGTGTAGCAG+AGG - chr4_3:48171434-48171453 Msa0644330:intron 50.0%
CTTGCAGCACCAGTATCAAC+TGG + chr4_3:48171774-48171793 None:intergenic 50.0%
! TCGCGAAGAATGGCTTGTGT+TGG + chr4_3:48171973-48171992 None:intergenic 50.0%
! CATGGTTTTCGTGCTACCGA+AGG + chr4_3:48172079-48172098 None:intergenic 50.0%
TGGAACCTAGTAGGGAAGTG+TGG - chr4_3:48172169-48172188 Msa0644330:CDS 50.0%
! AGGGAAGTGTGGAACTTGGA+TGG - chr4_3:48172180-48172199 Msa0644330:CDS 50.0%
! GTTACAGTAGTTGGTGCCCA+TGG + chr4_3:48171007-48171026 None:intergenic 50.0%
! TGGACCAGAAAGTGTAGCAG+AGG - chr4_3:48171434-48171453 Msa0644330:intron 50.0%
CTTGCAGCACCAGTATCAAC+TGG + chr4_3:48171774-48171793 None:intergenic 50.0%
! TCGCGAAGAATGGCTTGTGT+TGG + chr4_3:48171973-48171992 None:intergenic 50.0%
! CATGGTTTTCGTGCTACCGA+AGG + chr4_3:48172079-48172098 None:intergenic 50.0%
TGGAACCTAGTAGGGAAGTG+TGG - chr4_3:48172169-48172188 Msa0644330:CDS 50.0%
! AGGGAAGTGTGGAACTTGGA+TGG - chr4_3:48172180-48172199 Msa0644330:CDS 50.0%
AAGGTCTGCGAGCGCAATCT+AGG + chr4_3:48171264-48171283 None:intergenic 55.0%
AAGGTCTGCGAGCGCAATCT+AGG + chr4_3:48171264-48171283 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 48170648 48172527 48170648 ID=Msa0644330;Name=Msa0644330
chr4_3 mRNA 48170648 48172527 48170648 ID=Msa0644330-mRNA-1;Parent=Msa0644330;Name=Msa0644330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=80|1|1|1|1|1|4|171|307
chr4_3 exon 48170648 48171353 48170648 ID=Msa0644330-mRNA-1:exon:11409;Parent=Msa0644330-mRNA-1
chr4_3 exon 48171655 48171816 48171655 ID=Msa0644330-mRNA-1:exon:11408;Parent=Msa0644330-mRNA-1
chr4_3 exon 48172077 48172199 48172077 ID=Msa0644330-mRNA-1:exon:11407;Parent=Msa0644330-mRNA-1
chr4_3 exon 48172344 48172527 48172344 ID=Msa0644330-mRNA-1:exon:11406;Parent=Msa0644330-mRNA-1
chr4_3 five_prime_UTR 48172448 48172527 48172448 ID=Msa0644330-mRNA-1:five_prime_utr;Parent=Msa0644330-mRNA-1
chr4_3 CDS 48172344 48172447 48172344 ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3 CDS 48172077 48172199 48172077 ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3 CDS 48171655 48171816 48171655 ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3 CDS 48170819 48171353 48170819 ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3 three_prime_UTR 48170648 48170818 48170648 ID=Msa0644330-mRNA-1:three_prime_utr;Parent=Msa0644330-mRNA-1
Gene Sequence

>Msa0644330

ATGAGCACCCCTTTCTATGAATTCAAAAAACAAGCTTCATTTTTCCTCAAAGAGAAAATCAAGACTGCTAGATTAGCTCTAACAGATGTCACACCTGCAGAACTAATGATAGAAGAGGCAACTAATGGAAATCCATGGGCACCAACTACTGTAACCCTCAGATCAATTTCAAAGGCTGCTTTTGAGCTAGATGATTATAGGAGGATTATAGAGATTCTACATAAAAGATTGGCTAAATTTGAAAAGAAGAATTGGAGGGCCTCTTACAATTCCTTGATTGTGCTTGAGCATTTGTTGACTCATGGACCAGAAAGTGTAGCAGAGGAATTTCAGAGTGACAAAGATGTTATTGACCAGCTGAAAGGTTTCCAATATATTGATCAGAACGGGTTCAATTGGGGCCTAACTGTGAGAAAGAAATCAGAGAGAGTAATGAAACTGTTGGAAGAAGGAAATCTTCTCAAAGAAGAAAGAAACCAATGTAGAAGGTTATCAAGAGGTATTCAAGGTTTTGGAAGTTTCACTCAAAGATCAACTCCAACACAAGCCATTCTTCGCGAGAAATCATTGCCAACCACATTTGGTAGATGTAATTCCGACTCAAACAACTACGAAGATCAGGAAAATAATCCATCTTTCTCAACCTTCGGTAGCACGAAAACCATGATATACAAAGATGATGATAGTGGCAACAATCAATTGCTTCAAAAATCTGAATCAAGTTCTAAAGAAAATATGGAACCTAGTAGGGAAGTGTGGAACTTGGATGGAGAGTCAGAATCACTTTTGGATTGTGAAGAAGAGGATTCTTCTAGGTTTGGTAGGTTCAAAATAGAAGATGATCACCCCTTTAACTCAACAACAGAAATGAATAGTACTGCTTCCTTGCTTTCTGCTAGAGATGGAATACTACAAGGGTGTTGA

Protein sequence

>Msa0644330

MSTPFYEFKKQASFFLKEKIKTARLALTDVTPAELMIEEATNGNPWAPTTVTLRSISKAAFELDDYRRIIEILHKRLAKFEKKNWRASYNSLIVLEHLLTHGPESVAEEFQSDKDVIDQLKGFQYIDQNGFNWGLTVRKKSERVMKLLEEGNLLKEERNQCRRLSRGIQGFGSFTQRSTPTQAILREKSLPTTFGRCNSDSNNYEDQENNPSFSTFGSTKTMIYKDDDSGNNQLLQKSESSSKENMEPSREVWNLDGESESLLDCEEEDSSRFGRFKIEDDHPFNSTTEMNSTASLLSARDGILQGC*