AlfalfaGEDB | Msa0644330

M. sativa cultivar zhongmu-4 / Msa0644330

KEGG: K12471
GO: -
PFAM: PF01417.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644330	XP_013456124.1	96.743	307	10	0	1	307	1	307	0.0	614

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644330	sp\|Q8CHU3\|EPN2_MOUSE	32.240	183	100	4	33	208	20	185	1.82e-20	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644330	A0A072UWA8	96.743	307	10	0	1	307	1	307	0.0	614

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0644330	-0.832459	9.342100e-56	-8.615850e-47
Msa0004180	Msa0644330	-0.817966	2.506126e-52	-8.615850e-47
Msa0006080	Msa0644330	0.802947	4.404353e-49	-8.615850e-47
Msa0006480	Msa0644330	0.831892	1.290347e-55	-8.615850e-47
Msa0007810	Msa0644330	-0.823169	1.601031e-53	-8.615850e-47
Msa0011410	Msa0644330	-0.849861	2.463877e-60	-8.615850e-47
Msa0011440	Msa0644330	-0.846290	2.382903e-59	-8.615850e-47
Msa0011450	Msa0644330	-0.829610	4.675070e-55	-8.615850e-47
Msa0013270	Msa0644330	0.819835	9.427521e-53	-8.615850e-47
Msa0017710	Msa0644330	0.809946	1.471730e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644330	MtrunA17_Chr4g0031511	96.743	307	10	0	1	307	1	307	0.0	614
Msa0644330	MtrunA17_Chr1g0187501	44.311	167	93	0	7	173	8	174	1.76e-47	161
Msa0644330	MtrunA17_Chr7g0214661	32.877	146	94	2	16	161	12	153	2.90e-18	85.5
Msa0644330	MtrunA17_Chr1g0151921	30.137	146	101	1	16	161	11	155	1.00e-17	83.6
Msa0644330	MtrunA17_Chr7g0214591	30.709	127	71	2	37	161	18	129	2.23e-12	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644330	AT3G46540.1	57.471	261	84	7	1	248	13	259	8.92e-83	252
Msa0644330	AT3G46540.2	57.471	261	84	7	1	248	1	247	1.24e-82	251
Msa0644330	AT3G46540.3	54.222	225	77	6	36	248	1	211	1.45e-62	199
Msa0644330	AT1G08670.1	45.714	175	93	2	1	173	5	179	4.14e-48	161
Msa0644330	AT3G23350.2	43.931	173	95	1	5	175	7	179	1.16e-46	159
Msa0644330	AT3G23350.1	43.931	173	95	1	5	175	6	178	1.27e-46	159
Msa0644330	AT1G08670.2	41.803	122	70	1	53	173	1	122	1.78e-28	108
Msa0644330	AT2G43160.4	32.877	146	94	2	16	161	12	153	3.09e-18	85.5
Msa0644330	AT2G43160.3	32.877	146	94	2	16	161	12	153	3.62e-18	85.5
Msa0644330	AT2G43160.2	32.877	146	94	2	16	161	12	153	3.62e-18	85.5

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Find 72 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTGACCATTGAAGGG+AGG	0.698389	4_3:+48170701	None:intergenic
AAAGAAACTGTGACCATTGA+AGG	0.415028	4_3:+48170697	None:intergenic
AAATCATTGCCAACCACATT+TGG	0.381019	4_3:-48171159	Msa0644330:CDS
AACCCTCAGATCAATTTCAA+AGG	0.602620	4_3:-48172129	Msa0644330:CDS
AAGAAAATATGGAACCTAGT+AGG	0.369176	4_3:-48170993	Msa0644330:CDS
AAGAAACTGTGACCATTGAA+GGG	0.602368	4_3:+48170698	None:intergenic
AAGAAAGAAACCAATGTAGA+AGG	0.418535	4_3:-48171254	Msa0644330:CDS
AAGTTCCACACTTCCCTACT+AGG	0.387979	4_3:+48170979	None:intergenic
AATCCATCTTTCTCAACCTT+CGG	0.447702	4_3:-48171093	Msa0644330:CDS
AATTCCTCTGCTACACTTTC+TGG	0.104086	4_3:+48171715	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTTATTTCCTTCCTCAA+AGG	+	chr4_3:48170673-48170692	None:intergenic	30.0%
ATATCCAAAACTATAGCTCT+AGG	-	chr4_3:48170917-48170936	Msa0644330:CDS	30.0%
GCTAAGTAAAAAAAATGAGG+GGG	+	chr4_3:48171113-48171132	None:intergenic	30.0%
GCAATCAAATTCGATATATG+TGG	-	chr4_3:48171202-48171221	Msa0644330:CDS	30.0%
TAGTAACAAAGAAGTGATCA+CGG	+	chr4_3:48171296-48171315	None:intergenic	30.0%
TCCAATATATTGATCAGAAC+GGG	-	chr4_3:48171499-48171518	Msa0644330:intron	30.0%
AAGAAAGAAACCAATGTAGA+AGG	-	chr4_3:48171899-48171918	Msa0644330:intron	30.0%
AAGAAAATATGGAACCTAGT+AGG	-	chr4_3:48172160-48172179	Msa0644330:CDS	30.0%
AGAAAATATGGAACCTAGTA+GGG	-	chr4_3:48172161-48172180	Msa0644330:CDS	30.0%
TTTCTGTTGTTGAGTTAAAG+GGG	+	chr4_3:48172281-48172300	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	48170648	48172527	48170648	ID=Msa0644330;Name=Msa0644330
chr4_3	mRNA	48170648	48172527	48170648	ID=Msa0644330-mRNA-1;Parent=Msa0644330;Name=Msa0644330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=80\|1\|1\|1\|1\|1\|4\|171\|307
chr4_3	exon	48170648	48171353	48170648	ID=Msa0644330-mRNA-1:exon:11409;Parent=Msa0644330-mRNA-1
chr4_3	exon	48171655	48171816	48171655	ID=Msa0644330-mRNA-1:exon:11408;Parent=Msa0644330-mRNA-1
chr4_3	exon	48172077	48172199	48172077	ID=Msa0644330-mRNA-1:exon:11407;Parent=Msa0644330-mRNA-1
chr4_3	exon	48172344	48172527	48172344	ID=Msa0644330-mRNA-1:exon:11406;Parent=Msa0644330-mRNA-1
chr4_3	five_prime_UTR	48172448	48172527	48172448	ID=Msa0644330-mRNA-1:five_prime_utr;Parent=Msa0644330-mRNA-1
chr4_3	CDS	48172344	48172447	48172344	ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3	CDS	48172077	48172199	48172077	ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3	CDS	48171655	48171816	48171655	ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3	CDS	48170819	48171353	48170819	ID=Msa0644330-mRNA-1:cds;Parent=Msa0644330-mRNA-1
chr4_3	three_prime_UTR	48170648	48170818	48170648	ID=Msa0644330-mRNA-1:three_prime_utr;Parent=Msa0644330-mRNA-1

Gene Sequence

>Msa0644330

ATGAGCACCCCTTTCTATGAATTCAAAAAACAAGCTTCATTTTTCCTCAAAGAGAAAATCAAGACTGCTAGATTAGCTCTAACAGATGTCACACCTGCAGAACTAATGATAGAAGAGGCAACTAATGGAAATCCATGGGCACCAACTACTGTAACCCTCAGATCAATTTCAAAGGCTGCTTTTGAGCTAGATGATTATAGGAGGATTATAGAGATTCTACATAAAAGATTGGCTAAATTTGAAAAGAAGAATTGGAGGGCCTCTTACAATTCCTTGATTGTGCTTGAGCATTTGTTGACTCATGGACCAGAAAGTGTAGCAGAGGAATTTCAGAGTGACAAAGATGTTATTGACCAGCTGAAAGGTTTCCAATATATTGATCAGAACGGGTTCAATTGGGGCCTAACTGTGAGAAAGAAATCAGAGAGAGTAATGAAACTGTTGGAAGAAGGAAATCTTCTCAAAGAAGAAAGAAACCAATGTAGAAGGTTATCAAGAGGTATTCAAGGTTTTGGAAGTTTCACTCAAAGATCAACTCCAACACAAGCCATTCTTCGCGAGAAATCATTGCCAACCACATTTGGTAGATGTAATTCCGACTCAAACAACTACGAAGATCAGGAAAATAATCCATCTTTCTCAACCTTCGGTAGCACGAAAACCATGATATACAAAGATGATGATAGTGGCAACAATCAATTGCTTCAAAAATCTGAATCAAGTTCTAAAGAAAATATGGAACCTAGTAGGGAAGTGTGGAACTTGGATGGAGAGTCAGAATCACTTTTGGATTGTGAAGAAGAGGATTCTTCTAGGTTTGGTAGGTTCAAAATAGAAGATGATCACCCCTTTAACTCAACAACAGAAATGAATAGTACTGCTTCCTTGCTTTCTGCTAGAGATGGAATACTACAAGGGTGTTGA

Protein sequence

>Msa0644330

MSTPFYEFKKQASFFLKEKIKTARLALTDVTPAELMIEEATNGNPWAPTTVTLRSISKAAFELDDYRRIIEILHKRLAKFEKKNWRASYNSLIVLEHLLTHGPESVAEEFQSDKDVIDQLKGFQYIDQNGFNWGLTVRKKSERVMKLLEEGNLLKEERNQCRRLSRGIQGFGSFTQRSTPTQAILREKSLPTTFGRCNSDSNNYEDQENNPSFSTFGSTKTMIYKDDDSGNNQLLQKSESSSKENMEPSREVWNLDGESESLLDCEEEDSSRFGRFKIEDDHPFNSTTEMNSTASLLSARDGILQGC*