Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722490 | XP_013457044.1 | 97.917 | 144 | 3 | 0 | 2 | 145 | 67 | 210 | 1.30e-91 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722490 | A0A072UYY8 | 97.917 | 144 | 3 | 0 | 2 | 145 | 67 | 210 | 6.20e-92 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626510 | Msa0722490 | 0.806065 | 9.855039e-50 | -8.615850e-47 |
| Msa0722490 | Msa0902510 | 0.805783 | 1.129991e-49 | -8.615850e-47 |
| Msa0722490 | Msa0967380 | 0.817807 | 2.723181e-52 | -8.615850e-47 |
| Msa0722490 | Msa1031930 | 0.809642 | 1.710747e-50 | -8.615850e-47 |
| Msa0722490 | Msa1078170 | 0.803215 | 3.876539e-49 | -8.615850e-47 |
| Msa0722490 | Msa1123380 | 0.825658 | 4.156893e-54 | -8.615850e-47 |
| Msa0722490 | Msa1193290 | 0.820785 | 5.708280e-53 | -8.615850e-47 |
| Msa0722490 | Msa1208160 | 0.822462 | 2.338008e-53 | -8.615850e-47 |
| Msa0722490 | Msa1208430 | 0.815594 | 8.533990e-52 | -8.615850e-47 |
| Msa0722490 | Msa1258340 | 0.810604 | 1.061275e-50 | -8.615850e-47 |
| Msa0722490 | Msa1298370 | 0.816764 | 4.674846e-52 | -8.615850e-47 |
| Msa0722490 | Msa1303250 | 0.803990 | 2.677041e-49 | -8.615850e-47 |
| Msa0722490 | Msa1320410 | 0.806359 | 8.548316e-50 | -8.615850e-47 |
| Msa0722490 | Msa1361400 | 0.806302 | 8.789074e-50 | -8.615850e-47 |
| Msa0722490 | Msa1373100 | 0.811035 | 8.563111e-51 | -8.615850e-47 |
| Msa0722490 | Msa1422950 | 0.811160 | 8.043574e-51 | -8.615850e-47 |
| Msa0722490 | Msa1423350 | 0.816360 | 5.755479e-52 | -8.615850e-47 |
| Msa0722490 | Msa1451160 | 0.818056 | 2.392292e-52 | -8.615850e-47 |
| Msa0166560 | Msa0722490 | 0.803059 | 4.175387e-49 | -8.615850e-47 |
| Msa0188150 | Msa0722490 | 0.815614 | 8.448300e-52 | -8.615850e-47 |
| Msa0367870 | Msa0722490 | 0.800943 | 1.136805e-48 | -8.615850e-47 |
| Msa0300690 | Msa0722490 | 0.814440 | 1.538754e-51 | -8.615850e-47 |
| Msa0317510 | Msa0722490 | 0.800919 | 1.150010e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722490 | MtrunA17_Chr4g0047351 | 97.917 | 144 | 3 | 0 | 2 | 145 | 67 | 210 | 1.19e-95 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722490 | AT2G33793.3 | 67.586 | 145 | 46 | 1 | 2 | 145 | 25 | 169 | 6.72e-62 | 188 |
| Msa0722490 | AT2G33793.1 | 67.586 | 145 | 46 | 1 | 2 | 145 | 68 | 212 | 3.67e-61 | 187 |
| Msa0722490 | AT2G33793.2 | 67.586 | 145 | 46 | 1 | 2 | 145 | 68 | 212 | 3.67e-61 | 187 |
Find 22 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCAATTGTTCATATTTC+AGG | 0.150002 | 5_1:+19768742 | None:intergenic |
| AGAGAAAGCCACTTCCCTTC+AGG | 0.390324 | 5_1:-19769056 | Msa0722490:CDS |
| CTCCAAATTTGAAGAGGAAA+AGG | 0.405133 | 5_1:-19768775 | Msa0722490:CDS |
| TATGAGTATTTCAGGGAAGA+AGG | 0.437537 | 5_1:-19768640 | Msa0722490:intron |
| GACAAAATTACACAACTTGA+AGG | 0.454628 | 5_1:-19768579 | Msa0722490:CDS |
| TCTATGCATCTTCAATCATC+AGG | 0.480740 | 5_1:+19768345 | None:intergenic |
| GGACTAAATTTGAGAAGGAA+AGG | 0.495851 | 5_1:-19769404 | Msa0722490:intron |
| TTACAGAGATTTACCTTGCA+AGG | 0.502207 | 5_1:+19769033 | None:intergenic |
| TTGCAAGGCCTGAAGGGAAG+TGG | 0.536704 | 5_1:+19769048 | None:intergenic |
| ATTGAGGACTAAATTTGAGA+AGG | 0.538378 | 5_1:-19769409 | Msa0722490:CDS |
| AATCTACTATCGAGGGATTG+AGG | 0.538461 | 5_1:-19769425 | Msa0722490:CDS |
| CTTGGAGAGTACTTCAGATG+AGG | 0.555970 | 5_1:-19768376 | Msa0722490:CDS |
| TGTTATCTCCAAATTTGAAG+AGG | 0.560347 | 5_1:-19768781 | Msa0722490:CDS |
| ATTTACCTTGCAAGGCCTGA+AGG | 0.562958 | 5_1:+19769041 | None:intergenic |
| ACTTCCCTTCAGGCCTTGCA+AGG | 0.567512 | 5_1:-19769046 | Msa0722490:intron |
| TTTACCTTGCAAGGCCTGAA+GGG | 0.576295 | 5_1:+19769042 | None:intergenic |
| GAAATCAAATCTACTATCGA+GGG | 0.580053 | 5_1:-19769432 | Msa0722490:CDS |
| ATGCATCTTCAATCATCAGG+TGG | 0.582193 | 5_1:+19768348 | None:intergenic |
| TGAAATCAAATCTACTATCG+AGG | 0.596900 | 5_1:-19769433 | Msa0722490:CDS |
| TGCATCTTCAATCATCAGGT+GGG | 0.599771 | 5_1:+19768349 | None:intergenic |
| ACAAAATTACACAACTTGAA+GGG | 0.608150 | 5_1:-19768578 | Msa0722490:CDS |
| GCTTTCAAAGAGTTCCAAAG+AGG | 0.635771 | 5_1:-19769258 | Msa0722490:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAAAAACAATAATTA+AGG | + | chr5_1:19769533-19769552 | None:intergenic | 10.0% |
| !! | TAATCAAAAAACAATAATTA+AGG | + | chr5_1:19769533-19769552 | None:intergenic | 10.0% |
| !!! | ATTTGAGTTGTTTTATTATT+GGG | - | chr5_1:19768581-19768600 | Msa0722490:CDS | 15.0% |
| !!! | ATTTTGTAAATAATATAGTC+TGG | - | chr5_1:19768606-19768625 | Msa0722490:CDS | 15.0% |
| !!! | ATTTTATTTCAAGTAACTAA+CGG | - | chr5_1:19768655-19768674 | Msa0722490:intron | 15.0% |
| !!! | ATTTGAGTTGTTTTATTATT+GGG | - | chr5_1:19768581-19768600 | Msa0722490:CDS | 15.0% |
| !!! | ATTTTGTAAATAATATAGTC+TGG | - | chr5_1:19768606-19768625 | Msa0722490:CDS | 15.0% |
| !!! | ATTTTATTTCAAGTAACTAA+CGG | - | chr5_1:19768655-19768674 | Msa0722490:intron | 15.0% |
| !! | ATAAAGAAAAGATTCATCAA+TGG | - | chr5_1:19768447-19768466 | Msa0722490:intron | 20.0% |
| !!! | TTTGAGTTGTGTTTTTTTAT+TGG | - | chr5_1:19768538-19768557 | Msa0722490:intron | 20.0% |
| !!! | TTGAGTTGTGTTTTTTTATT+GGG | - | chr5_1:19768539-19768558 | Msa0722490:intron | 20.0% |
| !!! | TGGGAAATTTTGTAATTAAT+TGG | - | chr5_1:19768558-19768577 | Msa0722490:CDS | 20.0% |
| !!! | GATTTGAGTTGTTTTATTAT+TGG | - | chr5_1:19768580-19768599 | Msa0722490:CDS | 20.0% |
| !! | AATCTTCAAAATTCAAACTA+CGG | + | chr5_1:19768973-19768992 | None:intergenic | 20.0% |
| !!! | ATTATTATTTGAGCTTGTTA+TGG | - | chr5_1:19769121-19769140 | Msa0722490:CDS | 20.0% |
| !!! | TTGCAAAATTGATTTGTAAT+TGG | - | chr5_1:19769192-19769211 | Msa0722490:intron | 20.0% |
| !!! | AGTAAAAATTGGTTTATGAA+TGG | - | chr5_1:19769448-19769467 | Msa0722490:intron | 20.0% |
| !! | TATCATACTACTAGTAATTT+CGG | + | chr5_1:19769727-19769746 | None:intergenic | 20.0% |
| !! | GTAGTAATTACTATGAAATT+AGG | - | chr5_1:19769774-19769793 | Msa0722490:intron | 20.0% |
| !! | ATAAAGAAAAGATTCATCAA+TGG | - | chr5_1:19768447-19768466 | Msa0722490:intron | 20.0% |
| !!! | TTTGAGTTGTGTTTTTTTAT+TGG | - | chr5_1:19768538-19768557 | Msa0722490:intron | 20.0% |
| !!! | TTGAGTTGTGTTTTTTTATT+GGG | - | chr5_1:19768539-19768558 | Msa0722490:intron | 20.0% |
| !!! | TGGGAAATTTTGTAATTAAT+TGG | - | chr5_1:19768558-19768577 | Msa0722490:CDS | 20.0% |
| !!! | GATTTGAGTTGTTTTATTAT+TGG | - | chr5_1:19768580-19768599 | Msa0722490:CDS | 20.0% |
| !! | AATCTTCAAAATTCAAACTA+CGG | + | chr5_1:19768973-19768992 | None:intergenic | 20.0% |
| !!! | ATTATTATTTGAGCTTGTTA+TGG | - | chr5_1:19769121-19769140 | Msa0722490:CDS | 20.0% |
| !!! | TTGCAAAATTGATTTGTAAT+TGG | - | chr5_1:19769192-19769211 | Msa0722490:intron | 20.0% |
| !!! | AGTAAAAATTGGTTTATGAA+TGG | - | chr5_1:19769448-19769467 | Msa0722490:intron | 20.0% |
| !! | TATCATACTACTAGTAATTT+CGG | + | chr5_1:19769727-19769746 | None:intergenic | 20.0% |
| !! | GTAGTAATTACTATGAAATT+AGG | - | chr5_1:19769774-19769793 | Msa0722490:intron | 20.0% |
| ! | TTATTGTCATAACTGTTAGT+TGG | - | chr5_1:19768470-19768489 | Msa0722490:intron | 25.0% |
| !!! | TCAGTTTTATAGTTTCAATC+TGG | + | chr5_1:19769157-19769176 | None:intergenic | 25.0% |
| !!! | TGTATTGTTGTTTCAATGTT+AGG | - | chr5_1:19769378-19769397 | Msa0722490:intron | 25.0% |
| !! | TTTTACTTTACAAACCTCTT+TGG | + | chr5_1:19769435-19769454 | None:intergenic | 25.0% |
| ! | GAGGTTTGTAAAGTAAAAAT+TGG | - | chr5_1:19769437-19769456 | Msa0722490:CDS | 25.0% |
| ! | AATCTCTGTAACATTATCAT+TGG | - | chr5_1:19769655-19769674 | Msa0722490:intron | 25.0% |
| ! | TATGAAATTAGGTGCTAAAT+TGG | - | chr5_1:19769785-19769804 | Msa0722490:intron | 25.0% |
| ! | TACTCAATTGTTCATATTTC+AGG | + | chr5_1:19769937-19769956 | None:intergenic | 25.0% |
| ! | GAAATACTCATAAAGTTGTA+AGG | + | chr5_1:19770028-19770047 | None:intergenic | 25.0% |
| ! | TACAACTTTATGAGTATTTC+AGG | - | chr5_1:19770028-19770047 | Msa0722490:intron | 25.0% |
| ! | ACAACTTTATGAGTATTTCA+GGG | - | chr5_1:19770029-19770048 | Msa0722490:intron | 25.0% |
| ! | ACAAAATTACACAACTTGAA+GGG | - | chr5_1:19770098-19770117 | Msa0722490:intron | 25.0% |
| !!! | ATCAATTATTGTTTTGTCAC+AGG | - | chr5_1:19770234-19770253 | Msa0722490:intron | 25.0% |
| !!! | AGCATTTTAAGAAAAACTCT+TGG | - | chr5_1:19770271-19770290 | Msa0722490:intron | 25.0% |
| ! | TTATTGTCATAACTGTTAGT+TGG | - | chr5_1:19768470-19768489 | Msa0722490:intron | 25.0% |
| !!! | TCAGTTTTATAGTTTCAATC+TGG | + | chr5_1:19769157-19769176 | None:intergenic | 25.0% |
| !!! | TGTATTGTTGTTTCAATGTT+AGG | - | chr5_1:19769378-19769397 | Msa0722490:intron | 25.0% |
| !! | TTTTACTTTACAAACCTCTT+TGG | + | chr5_1:19769435-19769454 | None:intergenic | 25.0% |
| ! | GAGGTTTGTAAAGTAAAAAT+TGG | - | chr5_1:19769437-19769456 | Msa0722490:CDS | 25.0% |
| ! | AATCTCTGTAACATTATCAT+TGG | - | chr5_1:19769655-19769674 | Msa0722490:intron | 25.0% |
| ! | TATGAAATTAGGTGCTAAAT+TGG | - | chr5_1:19769785-19769804 | Msa0722490:intron | 25.0% |
| ! | TACTCAATTGTTCATATTTC+AGG | + | chr5_1:19769937-19769956 | None:intergenic | 25.0% |
| ! | GAAATACTCATAAAGTTGTA+AGG | + | chr5_1:19770028-19770047 | None:intergenic | 25.0% |
| ! | TACAACTTTATGAGTATTTC+AGG | - | chr5_1:19770028-19770047 | Msa0722490:intron | 25.0% |
| ! | ACAACTTTATGAGTATTTCA+GGG | - | chr5_1:19770029-19770048 | Msa0722490:intron | 25.0% |
| ! | ACAAAATTACACAACTTGAA+GGG | - | chr5_1:19770098-19770117 | Msa0722490:intron | 25.0% |
| !!! | ATCAATTATTGTTTTGTCAC+AGG | - | chr5_1:19770234-19770253 | Msa0722490:intron | 25.0% |
| !!! | AGCATTTTAAGAAAAACTCT+TGG | - | chr5_1:19770271-19770290 | Msa0722490:intron | 25.0% |
| ! | AGTGAAGAGAAGTTTTTGTT+TGG | - | chr5_1:19768418-19768437 | Msa0722490:CDS | 30.0% |
| ! | ATTTCAAGTAACTAACGGAT+CGG | - | chr5_1:19768660-19768679 | Msa0722490:intron | 30.0% |
| GGCAAAAGTTATTATGCATA+AGG | - | chr5_1:19768713-19768732 | Msa0722490:intron | 30.0% | |
| AAATCAGAACCATTAGATCA+AGG | - | chr5_1:19768761-19768780 | Msa0722490:CDS | 30.0% | |
| ATCAAAAACAGAAACAAGCA+AGG | + | chr5_1:19769059-19769078 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTTTCTGACAGTGT+TGG | - | chr5_1:19769217-19769236 | Msa0722490:intron | 30.0% |
| TGAAATCAAATCTACTATCG+AGG | - | chr5_1:19769243-19769262 | Msa0722490:intron | 30.0% | |
| GAAATCAAATCTACTATCGA+GGG | - | chr5_1:19769244-19769263 | Msa0722490:intron | 30.0% | |
| ATTGAGGACTAAATTTGAGA+AGG | - | chr5_1:19769267-19769286 | Msa0722490:CDS | 30.0% | |
| ACTCTTTCAGTATAGTGAAA+CGG | + | chr5_1:19769359-19769378 | None:intergenic | 30.0% | |
| TTAGTTACTGGGTAATTAGT+AGG | - | chr5_1:19769480-19769499 | Msa0722490:intron | 30.0% | |
| TTGGAGATAACATCTAACAA+TGG | + | chr5_1:19769887-19769906 | None:intergenic | 30.0% | |
| TGTTATCTCCAAATTTGAAG+AGG | - | chr5_1:19769895-19769914 | Msa0722490:intron | 30.0% | |
| ! | TTCCTTTTCCTCTTCAAATT+TGG | + | chr5_1:19769906-19769925 | None:intergenic | 30.0% |
| GGAAATTAAAATCACAGAAC+TGG | + | chr5_1:19770007-19770026 | None:intergenic | 30.0% | |
| GACAAAATTACACAACTTGA+AGG | - | chr5_1:19770097-19770116 | Msa0722490:intron | 30.0% | |
| GTCATTGAAAAAGAAGAAGA+AGG | - | chr5_1:19770120-19770139 | Msa0722490:intron | 30.0% | |
| TTAGTAACTATTAAGCAGCA+TGG | - | chr5_1:19770147-19770166 | Msa0722490:intron | 30.0% | |
| ! | AGTGAAGAGAAGTTTTTGTT+TGG | - | chr5_1:19768418-19768437 | Msa0722490:CDS | 30.0% |
| ! | ATTTCAAGTAACTAACGGAT+CGG | - | chr5_1:19768660-19768679 | Msa0722490:intron | 30.0% |
| GGCAAAAGTTATTATGCATA+AGG | - | chr5_1:19768713-19768732 | Msa0722490:intron | 30.0% | |
| AAATCAGAACCATTAGATCA+AGG | - | chr5_1:19768761-19768780 | Msa0722490:CDS | 30.0% | |
| ATCAAAAACAGAAACAAGCA+AGG | + | chr5_1:19769059-19769078 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTTTCTGACAGTGT+TGG | - | chr5_1:19769217-19769236 | Msa0722490:intron | 30.0% |
| TGAAATCAAATCTACTATCG+AGG | - | chr5_1:19769243-19769262 | Msa0722490:intron | 30.0% | |
| GAAATCAAATCTACTATCGA+GGG | - | chr5_1:19769244-19769263 | Msa0722490:intron | 30.0% | |
| ATTGAGGACTAAATTTGAGA+AGG | - | chr5_1:19769267-19769286 | Msa0722490:CDS | 30.0% | |
| ACTCTTTCAGTATAGTGAAA+CGG | + | chr5_1:19769359-19769378 | None:intergenic | 30.0% | |
| TTAGTTACTGGGTAATTAGT+AGG | - | chr5_1:19769480-19769499 | Msa0722490:intron | 30.0% | |
| TTGGAGATAACATCTAACAA+TGG | + | chr5_1:19769887-19769906 | None:intergenic | 30.0% | |
| TGTTATCTCCAAATTTGAAG+AGG | - | chr5_1:19769895-19769914 | Msa0722490:intron | 30.0% | |
| ! | TTCCTTTTCCTCTTCAAATT+TGG | + | chr5_1:19769906-19769925 | None:intergenic | 30.0% |
| GGAAATTAAAATCACAGAAC+TGG | + | chr5_1:19770007-19770026 | None:intergenic | 30.0% | |
| GACAAAATTACACAACTTGA+AGG | - | chr5_1:19770097-19770116 | Msa0722490:intron | 30.0% | |
| GTCATTGAAAAAGAAGAAGA+AGG | - | chr5_1:19770120-19770139 | Msa0722490:intron | 30.0% | |
| TTAGTAACTATTAAGCAGCA+TGG | - | chr5_1:19770147-19770166 | Msa0722490:intron | 30.0% | |
| AATATGTTGCTCCTACATCA+TGG | + | chr5_1:19768397-19768416 | None:intergenic | 35.0% | |
| CATAAGGATTTCCTTATGCA+TGG | - | chr5_1:19768729-19768748 | Msa0722490:intron | 35.0% | |
| GGACTAAATTTGAGAAGGAA+AGG | - | chr5_1:19769272-19769291 | Msa0722490:CDS | 35.0% | |
| ! | TGTTAGGCAAACTTTTGCTA+AGG | - | chr5_1:19769394-19769413 | Msa0722490:intron | 35.0% |
| ! | TGGTGTTGAATGTTAGTTAC+TGG | - | chr5_1:19769468-19769487 | Msa0722490:intron | 35.0% |
| ! | GGTGTTGAATGTTAGTTACT+GGG | - | chr5_1:19769469-19769488 | Msa0722490:intron | 35.0% |
| TACTGGGTAATTAGTAGGAA+TGG | - | chr5_1:19769485-19769504 | Msa0722490:intron | 35.0% | |
| TTACAGAGATTTACCTTGCA+AGG | + | chr5_1:19769646-19769665 | None:intergenic | 35.0% | |
| CTCTGTAACATTATCATTGG+AGG | - | chr5_1:19769658-19769677 | Msa0722490:intron | 35.0% | |
| CTCCAAATTTGAAGAGGAAA+AGG | - | chr5_1:19769901-19769920 | Msa0722490:intron | 35.0% | |
| TATGAGTATTTCAGGGAAGA+AGG | - | chr5_1:19770036-19770055 | Msa0722490:intron | 35.0% | |
| AAAAACTCTTGGCTCATTCT+TGG | - | chr5_1:19770282-19770301 | Msa0722490:intron | 35.0% | |
| AATATGTTGCTCCTACATCA+TGG | + | chr5_1:19768397-19768416 | None:intergenic | 35.0% | |
| CATAAGGATTTCCTTATGCA+TGG | - | chr5_1:19768729-19768748 | Msa0722490:intron | 35.0% | |
| GGACTAAATTTGAGAAGGAA+AGG | - | chr5_1:19769272-19769291 | Msa0722490:CDS | 35.0% | |
| ! | TGTTAGGCAAACTTTTGCTA+AGG | - | chr5_1:19769394-19769413 | Msa0722490:intron | 35.0% |
| ! | TGGTGTTGAATGTTAGTTAC+TGG | - | chr5_1:19769468-19769487 | Msa0722490:intron | 35.0% |
| ! | GGTGTTGAATGTTAGTTACT+GGG | - | chr5_1:19769469-19769488 | Msa0722490:intron | 35.0% |
| TACTGGGTAATTAGTAGGAA+TGG | - | chr5_1:19769485-19769504 | Msa0722490:intron | 35.0% | |
| TTACAGAGATTTACCTTGCA+AGG | + | chr5_1:19769646-19769665 | None:intergenic | 35.0% | |
| CTCTGTAACATTATCATTGG+AGG | - | chr5_1:19769658-19769677 | Msa0722490:intron | 35.0% | |
| CTCCAAATTTGAAGAGGAAA+AGG | - | chr5_1:19769901-19769920 | Msa0722490:intron | 35.0% | |
| TATGAGTATTTCAGGGAAGA+AGG | - | chr5_1:19770036-19770055 | Msa0722490:intron | 35.0% | |
| AAAAACTCTTGGCTCATTCT+TGG | - | chr5_1:19770282-19770301 | Msa0722490:intron | 35.0% | |
| ! | TTGTTTTCCTGCCATGATGT+AGG | - | chr5_1:19768383-19768402 | Msa0722490:CDS | 40.0% |
| GATAAGCTTGGAGCTTAAGT+TGG | - | chr5_1:19768682-19768701 | Msa0722490:intron | 40.0% | |
| TTGCTTATGCACCATGCATA+AGG | + | chr5_1:19768743-19768762 | None:intergenic | 40.0% | |
| AGAACCATTAGATCAAGGAC+AGG | - | chr5_1:19768766-19768785 | Msa0722490:CDS | 40.0% | |
| AACACCTGTCCTTGATCTAA+TGG | + | chr5_1:19768773-19768792 | None:intergenic | 40.0% | |
| ! | CAAGGACAGGTGTTATAATC+TGG | - | chr5_1:19768779-19768798 | Msa0722490:CDS | 40.0% |
| TACTCGCTCTGTTATTGTGT+TGG | + | chr5_1:19768825-19768844 | None:intergenic | 40.0% | |
| CAGAAACAAGCAAGGTGAAA+CGG | + | chr5_1:19769051-19769070 | None:intergenic | 40.0% | |
| AATCTACTATCGAGGGATTG+AGG | - | chr5_1:19769251-19769270 | Msa0722490:intron | 40.0% | |
| GCTTTCAAAGAGTTCCAAAG+AGG | - | chr5_1:19769418-19769437 | Msa0722490:CDS | 40.0% | |
| ! | TTGTTTTCCTGCCATGATGT+AGG | - | chr5_1:19768383-19768402 | Msa0722490:CDS | 40.0% |
| GATAAGCTTGGAGCTTAAGT+TGG | - | chr5_1:19768682-19768701 | Msa0722490:intron | 40.0% | |
| TTGCTTATGCACCATGCATA+AGG | + | chr5_1:19768743-19768762 | None:intergenic | 40.0% | |
| AGAACCATTAGATCAAGGAC+AGG | - | chr5_1:19768766-19768785 | Msa0722490:CDS | 40.0% | |
| AACACCTGTCCTTGATCTAA+TGG | + | chr5_1:19768773-19768792 | None:intergenic | 40.0% | |
| ! | CAAGGACAGGTGTTATAATC+TGG | - | chr5_1:19768779-19768798 | Msa0722490:CDS | 40.0% |
| TACTCGCTCTGTTATTGTGT+TGG | + | chr5_1:19768825-19768844 | None:intergenic | 40.0% | |
| CAGAAACAAGCAAGGTGAAA+CGG | + | chr5_1:19769051-19769070 | None:intergenic | 40.0% | |
| AATCTACTATCGAGGGATTG+AGG | - | chr5_1:19769251-19769270 | Msa0722490:intron | 40.0% | |
| GCTTTCAAAGAGTTCCAAAG+AGG | - | chr5_1:19769418-19769437 | Msa0722490:CDS | 40.0% | |
| CAAAGCTCGAGTGTCATATG+TGG | - | chr5_1:19768631-19768650 | Msa0722490:intron | 45.0% | |
| ! | ACTAACGGATCGGATAAGCT+TGG | - | chr5_1:19768670-19768689 | Msa0722490:intron | 45.0% |
| ACAACCATCTCCATCAACGA+CGG | - | chr5_1:19768877-19768896 | Msa0722490:intron | 45.0% | |
| TTTACCTTGCAAGGCCTGAA+GGG | + | chr5_1:19769637-19769656 | None:intergenic | 45.0% | |
| ATTTACCTTGCAAGGCCTGA+AGG | + | chr5_1:19769638-19769657 | None:intergenic | 45.0% | |
| !! | CTTGGAGAGTACTTCAGATG+AGG | - | chr5_1:19770300-19770319 | Msa0722490:intron | 45.0% |
| CAAAGCTCGAGTGTCATATG+TGG | - | chr5_1:19768631-19768650 | Msa0722490:intron | 45.0% | |
| ! | ACTAACGGATCGGATAAGCT+TGG | - | chr5_1:19768670-19768689 | Msa0722490:intron | 45.0% |
| ACAACCATCTCCATCAACGA+CGG | - | chr5_1:19768877-19768896 | Msa0722490:intron | 45.0% | |
| TTTACCTTGCAAGGCCTGAA+GGG | + | chr5_1:19769637-19769656 | None:intergenic | 45.0% | |
| ATTTACCTTGCAAGGCCTGA+AGG | + | chr5_1:19769638-19769657 | None:intergenic | 45.0% | |
| !! | CTTGGAGAGTACTTCAGATG+AGG | - | chr5_1:19770300-19770319 | Msa0722490:intron | 45.0% |
| TGTTGCTCCTACATCATGGC+AGG | + | chr5_1:19768393-19768412 | None:intergenic | 50.0% | |
| !!! | GGTTGTGGTGGTGGTGATTT+TGG | + | chr5_1:19768863-19768882 | None:intergenic | 50.0% |
| ! | GTTGATGGAGATGGTTGTGG+TGG | + | chr5_1:19768875-19768894 | None:intergenic | 50.0% |
| ! | GTCGTTGATGGAGATGGTTG+TGG | + | chr5_1:19768878-19768897 | None:intergenic | 50.0% |
| ! | GTGTTTTTCGCCGTCGTTGA+TGG | + | chr5_1:19768890-19768909 | None:intergenic | 50.0% |
| AGAGAAAGCCACTTCCCTTC+AGG | - | chr5_1:19769620-19769639 | Msa0722490:intron | 50.0% | |
| TGTTGCTCCTACATCATGGC+AGG | + | chr5_1:19768393-19768412 | None:intergenic | 50.0% | |
| !!! | GGTTGTGGTGGTGGTGATTT+TGG | + | chr5_1:19768863-19768882 | None:intergenic | 50.0% |
| ! | GTTGATGGAGATGGTTGTGG+TGG | + | chr5_1:19768875-19768894 | None:intergenic | 50.0% |
| ! | GTCGTTGATGGAGATGGTTG+TGG | + | chr5_1:19768878-19768897 | None:intergenic | 50.0% |
| ! | GTGTTTTTCGCCGTCGTTGA+TGG | + | chr5_1:19768890-19768909 | None:intergenic | 50.0% |
| AGAGAAAGCCACTTCCCTTC+AGG | - | chr5_1:19769620-19769639 | Msa0722490:intron | 50.0% | |
| !! | GGAGCTTAAGTTGGAGCACG+CGG | - | chr5_1:19768691-19768710 | Msa0722490:intron | 55.0% |
| !! | GAGCTTAAGTTGGAGCACGC+GGG | - | chr5_1:19768692-19768711 | Msa0722490:intron | 55.0% |
| !! | GATTTTGGTGAGCGCGTGTG+AGG | + | chr5_1:19768848-19768867 | None:intergenic | 55.0% |
| GATGGAGATGGTTGTGGTGG+TGG | + | chr5_1:19768872-19768891 | None:intergenic | 55.0% | |
| ! | TTCGCCGTCGTTGATGGAGA+TGG | + | chr5_1:19768884-19768903 | None:intergenic | 55.0% |
| ACGGCGAAAAACACCGACAC+CGG | - | chr5_1:19768896-19768915 | Msa0722490:intron | 55.0% | |
| AACGCAATCGTGAGCCGAAC+CGG | + | chr5_1:19768935-19768954 | None:intergenic | 55.0% | |
| TTGCAAGGCCTGAAGGGAAG+TGG | + | chr5_1:19769631-19769650 | None:intergenic | 55.0% | |
| ACTTCCCTTCAGGCCTTGCA+AGG | - | chr5_1:19769630-19769649 | Msa0722490:intron | 55.0% | |
| !! | GGAGCTTAAGTTGGAGCACG+CGG | - | chr5_1:19768691-19768710 | Msa0722490:intron | 55.0% |
| !! | GAGCTTAAGTTGGAGCACGC+GGG | - | chr5_1:19768692-19768711 | Msa0722490:intron | 55.0% |
| !! | GATTTTGGTGAGCGCGTGTG+AGG | + | chr5_1:19768848-19768867 | None:intergenic | 55.0% |
| GATGGAGATGGTTGTGGTGG+TGG | + | chr5_1:19768872-19768891 | None:intergenic | 55.0% | |
| ! | TTCGCCGTCGTTGATGGAGA+TGG | + | chr5_1:19768884-19768903 | None:intergenic | 55.0% |
| ACGGCGAAAAACACCGACAC+CGG | - | chr5_1:19768896-19768915 | Msa0722490:intron | 55.0% | |
| AACGCAATCGTGAGCCGAAC+CGG | + | chr5_1:19768935-19768954 | None:intergenic | 55.0% | |
| TTGCAAGGCCTGAAGGGAAG+TGG | + | chr5_1:19769631-19769650 | None:intergenic | 55.0% | |
| ACTTCCCTTCAGGCCTTGCA+AGG | - | chr5_1:19769630-19769649 | Msa0722490:intron | 55.0% | |
| GCGAAAAACACCGACACCGG+CGG | - | chr5_1:19768899-19768918 | Msa0722490:intron | 60.0% | |
| ACGCAATCGTGAGCCGAACC+GGG | + | chr5_1:19768934-19768953 | None:intergenic | 60.0% | |
| GCGAAAAACACCGACACCGG+CGG | - | chr5_1:19768899-19768918 | Msa0722490:intron | 60.0% | |
| ACGCAATCGTGAGCCGAACC+GGG | + | chr5_1:19768934-19768953 | None:intergenic | 60.0% | |
| CGTGAGCCGAACCGGGATAG+CGG | + | chr5_1:19768927-19768946 | None:intergenic | 65.0% | |
| CGTGAGCCGAACCGGGATAG+CGG | + | chr5_1:19768927-19768946 | None:intergenic | 65.0% | |
| !! | GATAGCGGTGCCGCCGGTGT+CGG | + | chr5_1:19768912-19768931 | None:intergenic | 70.0% |
| !! | AACCGGGATAGCGGTGCCGC+CGG | + | chr5_1:19768918-19768937 | None:intergenic | 70.0% |
| GCGGCACCGCTATCCCGGTT+CGG | - | chr5_1:19768918-19768937 | Msa0722490:intron | 70.0% | |
| !! | GATAGCGGTGCCGCCGGTGT+CGG | + | chr5_1:19768912-19768931 | None:intergenic | 70.0% |
| !! | AACCGGGATAGCGGTGCCGC+CGG | + | chr5_1:19768918-19768937 | None:intergenic | 70.0% |
| GCGGCACCGCTATCCCGGTT+CGG | - | chr5_1:19768918-19768937 | Msa0722490:intron | 70.0% | |
| CACCGGCGGCACCGCTATCC+CGG | - | chr5_1:19768913-19768932 | Msa0722490:intron | 75.0% | |
| CACCGGCGGCACCGCTATCC+CGG | - | chr5_1:19768913-19768932 | Msa0722490:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19768356 | 19770342 | 19768356 | ID=Msa0722490;Name=Msa0722490 |
| chr5_1 | mRNA | 19768356 | 19770342 | 19768356 | ID=Msa0722490-mRNA-1;Parent=Msa0722490;Name=Msa0722490-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|0.85|0.83|0.85|7|0|145 |
| chr5_1 | exon | 19770338 | 19770342 | 19770338 | ID=Msa0722490-mRNA-1:exon:7472;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19769405 | 19769464 | 19769405 | ID=Msa0722490-mRNA-1:exon:7471;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19769259 | 19769298 | 19769259 | ID=Msa0722490-mRNA-1:exon:7470;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19769047 | 19769140 | 19769047 | ID=Msa0722490-mRNA-1:exon:7469;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19768745 | 19768804 | 19768745 | ID=Msa0722490-mRNA-1:exon:7468;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19768557 | 19768648 | 19768557 | ID=Msa0722490-mRNA-1:exon:7467;Parent=Msa0722490-mRNA-1 |
| chr5_1 | exon | 19768356 | 19768442 | 19768356 | ID=Msa0722490-mRNA-1:exon:7466;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19770338 | 19770342 | 19770338 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19769405 | 19769464 | 19769405 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19769259 | 19769298 | 19769259 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19769047 | 19769140 | 19769047 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19768745 | 19768804 | 19768745 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19768557 | 19768648 | 19768557 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| chr5_1 | CDS | 19768356 | 19768442 | 19768356 | ID=Msa0722490-mRNA-1:cds;Parent=Msa0722490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
