AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298370 MtrunA17_Chr4g0057261 97.143 280 8 0 1 280 1 280 0.0 543
Msa1298370 MtrunA17_Chr6g0473621 45.724 304 118 4 20 280 22 321 3.49e-79 243
Msa1298370 MtrunA17_Chr1g0203771 47.902 286 114 5 28 280 18 301 3.45e-76 235
Msa1298370 MtrunA17_Chr2g0285591 39.759 249 114 5 32 279 30 243 1.46e-53 174
Msa1298370 MtrunA17_Chr7g0243051 44.554 202 111 1 32 232 19 220 1.25e-47 158
Msa1298370 MtrunA17_Chr4g0007601 37.179 234 119 2 47 280 19 224 1.62e-40 140
Msa1298370 MtrunA17_Chr6g0458281 41.176 119 61 2 24 136 22 137 2.62e-21 87.8
Msa1298370 MtrunA17_Chr6g0458271 43.810 105 57 1 32 136 38 140 2.92e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298370 AT5G52060.1 46.545 275 119 3 34 280 41 315 1.68e-72 226
Msa1298370 AT5G62100.2 45.238 252 131 3 31 280 14 260 1.16e-66 209
Msa1298370 AT5G07220.1 44.615 260 132 4 32 280 21 279 2.45e-65 206
Msa1298370 AT5G62100.1 43.726 263 130 5 31 280 14 271 1.76e-63 201
Msa1298370 AT5G62100.5 51.087 184 89 1 31 214 14 196 1.05e-56 181
Msa1298370 AT5G62100.4 50.543 184 90 1 31 214 14 196 4.91e-56 180
Msa1298370 AT3G51780.1 35.985 264 124 5 31 279 9 242 6.41e-46 155
Msa1298370 AT5G62100.3 54.412 136 61 1 31 166 14 148 3.72e-44 147
Msa1298370 AT5G62100.6 54.412 136 61 1 31 166 14 148 3.72e-44 147
Msa1298370 AT5G14360.1 40.000 105 60 1 33 137 49 150 1.86e-20 86.3
Msa1298370 AT5G40630.1 39.815 108 62 2 26 132 50 155 1.05e-19 84.3

Find 70 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTATTTGACTTATTATA+TGG 0.159749 8_3:-59202394 Msa1298370:three_prime_UTR
ATTACATTGGATGAAATTTA+TGG 0.207184 8_3:-59202829 Msa1298370:CDS
CTCTAAGGTTACTTCAATTA+AGG 0.213411 8_3:+59203070 None:intergenic
ATTGGTATAATTTAGAAGTT+TGG 0.256429 8_3:+59203824 None:intergenic
TTATACCAATCTTACTCTTT+TGG 0.272341 8_3:-59203811 Msa1298370:five_prime_UTR
CTTAATTGAAGTAACCTTAG+AGG 0.272826 8_3:-59203069 Msa1298370:CDS
CATGAGAACTGATATGAATT+TGG 0.287339 8_3:+59203424 None:intergenic
ATCAGTTCTCATGCAAGTTT+TGG 0.294978 8_3:-59203414 Msa1298370:intron
GGTTGACAAACTTGCCAAAA+AGG 0.303391 8_3:-59203048 Msa1298370:intron
GGCAAGTTTGTCAACCTCTA+AGG 0.306312 8_3:+59203055 None:intergenic
TTCAGCTCTATTTAATTCAA+TGG 0.336562 8_3:-59202347 Msa1298370:three_prime_UTR
GTTTGGAGTTGGTGGTGTTT+TGG 0.336722 8_3:+59203841 None:intergenic
AGAAATTGCTTTCCTTTGAA+TGG 0.337098 8_3:+59203686 None:intergenic
GAGTAGAGAAAGAAGGATAT+TGG 0.354055 8_3:-59203132 Msa1298370:CDS
TCCTATTTGACTTATTATAT+GGG 0.362984 8_3:-59202393 Msa1298370:three_prime_UTR
ATCAAAGTCAAAGTGAAGTA+TGG 0.369232 8_3:-59203459 Msa1298370:CDS
CTTCACTTTGACTTTGATGA+TGG 0.373301 8_3:+59203464 None:intergenic
AATTCCCATTCAGCTACATT+TGG 0.373777 8_3:+59203546 None:intergenic
GTTGTTCTTTCTTCTTCCCT+AGG 0.373805 8_3:-59203715 Msa1298370:five_prime_UTR
TTAATCAAAAGTTTCCCATT+TGG 0.385906 8_3:+59202501 None:intergenic
TCCCATATAATAAGTCAAAT+AGG 0.395520 8_3:+59202392 None:intergenic
CAATCCAAATGTAGCTGAAT+GGG 0.407553 8_3:-59203550 Msa1298370:CDS
AGATTGCATTTAAGTTGCTT+TGG 0.411653 8_3:-59202479 Msa1298370:three_prime_UTR
AAAGACCAAAAGAGTAAGAT+TGG 0.428824 8_3:+59203806 None:intergenic
AATTTGGTAGGTTTCAGCTT+TGG 0.444763 8_3:-59202929 Msa1298370:intron
TTTGCTTGATAGAGCTAAAA+GGG 0.445662 8_3:+59203657 None:intergenic
TAACATAACAAAGGAGAGTA+AGG 0.457931 8_3:-59202611 Msa1298370:CDS
ATTTAGAAGTTTGGAGTTGG+TGG 0.458164 8_3:+59203833 None:intergenic
TCAATCCAAATGTAGCTGAA+TGG 0.461891 8_3:-59203551 Msa1298370:CDS
TTGGAGGGTAATGTTTCTAA+AGG 0.464546 8_3:-59202910 Msa1298370:CDS
AAGAATTGCAAAGAAGGAAA+AGG 0.466398 8_3:-59203102 Msa1298370:CDS
GAAATTGCAGAGAAAAGAAC+AGG 0.476993 8_3:-59202794 Msa1298370:intron
CAGTTGTAGTAACAACCAAA+TGG 0.480586 8_3:-59202516 Msa1298370:CDS
TTGGTAGGTTTCAGCTTTGG+AGG 0.481735 8_3:-59202926 Msa1298370:intron
AGAGAAAAGGAGAAAAGGAA+TGG 0.482493 8_3:+59203947 None:intergenic
GAAATTAAGAATTGCAAAGA+AGG 0.485109 8_3:-59203108 Msa1298370:CDS
CCTTTGAATGGAGGAAACCT+AGG 0.486487 8_3:+59203698 None:intergenic
CCTAGGTTTCCTCCATTCAA+AGG 0.488881 8_3:-59203698 Msa1298370:five_prime_UTR
AGGTGAAGTTATTTCAGAGT+TGG 0.494651 8_3:-59202890 Msa1298370:CDS
AACAATATAGCACAATTATG+AGG 0.503406 8_3:-59204141 None:intergenic
ATAATTTAGAAGTTTGGAGT+TGG 0.511890 8_3:+59203830 None:intergenic
GGTAGAAGAAATTAATGTGA+AGG 0.518137 8_3:+59204112 None:intergenic
AGTTGTAGTAACAACCAAAT+GGG 0.521225 8_3:-59202515 Msa1298370:CDS
AATAGAAGAATGAAAAGGAA+TGG 0.527636 8_3:+59203777 None:intergenic
AACTGATATGAATTTGGTGA+TGG 0.530668 8_3:+59203430 None:intergenic
AAAATGGGAGTGAGTGAGGG+AGG 0.530788 8_3:+59204011 None:intergenic
AGTGAAATAGAAGAATGAAA+AGG 0.536106 8_3:+59203772 None:intergenic
AAAATGTTGACAGAATCAAC+AGG 0.539679 8_3:-59203272 Msa1298370:CDS
AATTGCTTTCCTTTGAATGG+AGG 0.546291 8_3:+59203689 None:intergenic
AGAGACTTTCTATCAAATCA+AGG 0.547417 8_3:-59204045 Msa1298370:five_prime_UTR
GATATTGAGAGAGTCAAAGA+TGG 0.547900 8_3:-59203185 Msa1298370:CDS
TTTCACTTTCACCGACAGCT+AGG 0.553520 8_3:-59203873 Msa1298370:five_prime_UTR
ACATCGAGAGTAGAGAAAGA+AGG 0.558063 8_3:-59203139 Msa1298370:CDS
ACTGACTCAGAATGTTTCAA+AGG 0.560272 8_3:+59202535 None:intergenic
GATGAGAGTATTGATTACAT+TGG 0.562495 8_3:-59202842 Msa1298370:CDS
TTGGATGAAATTTATGGTGA+GGG 0.566235 8_3:-59202823 Msa1298370:CDS
CTTTGAATGGAGGAAACCTA+GGG 0.567548 8_3:+59203699 None:intergenic
AAAACTTGCAATGCAGTCAA+AGG 0.573016 8_3:-59203637 Msa1298370:exon
TGGTAGGTTTCAGCTTTGGA+GGG 0.580586 8_3:-59202925 Msa1298370:intron
ATTTGGATTGACATGAACAT+TGG 0.587267 8_3:+59203563 None:intergenic
GTAGAAGAAATTAATGTGAA+GGG 0.597323 8_3:+59204113 None:intergenic
CCACTCACACATATATAACA+CGG 0.615934 8_3:+59202271 None:intergenic
GGTGAAAACAACCTAGCTGT+CGG 0.625319 8_3:+59203862 None:intergenic
GCTGAATGGGAATTAAGACC+AGG 0.631294 8_3:-59203537 Msa1298370:CDS
ACTGATATGAATTTGGTGAT+GGG 0.633798 8_3:+59203431 None:intergenic
CCGTGTTATATATGTGTGAG+TGG 0.636609 8_3:-59202271 Msa1298370:three_prime_UTR
ATTGGATGAAATTTATGGTG+AGG 0.644553 8_3:-59202824 Msa1298370:CDS
TGCAGTCAAAGGTTACAAAG+AGG 0.668299 8_3:-59203626 Msa1298370:CDS
GAATGGGAATTAAGACCAGG+TGG 0.675489 8_3:-59203534 Msa1298370:CDS
AAATAACAATAACATAACAA+AGG 0.682250 8_3:-59202620 Msa1298370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_3:59202307-59202326 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_3:59202308-59202327 Msa1298370:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_3:59203688-59203707 Msa1298370:five_prime_UTR 10.0%
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_3:59202307-59202326 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_3:59202308-59202327 Msa1298370:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_3:59203688-59203707 Msa1298370:five_prime_UTR 10.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_3:59202304-59202323 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_3:59203028-59203047 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_3:59203072-59203091 Msa1298370:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_3:59203447-59203466 Msa1298370:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_3:59203772-59203791 Msa1298370:five_prime_UTR 15.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_3:59202304-59202323 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_3:59203028-59203047 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_3:59203072-59203091 Msa1298370:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_3:59203447-59203466 Msa1298370:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_3:59203772-59203791 Msa1298370:five_prime_UTR 15.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_3:59202461-59202480 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAT+GGG + chr8_3:59202510-59202529 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_3:59202571-59202590 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_3:59203016-59203035 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_3:59203062-59203081 Msa1298370:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_3:59203424-59203443 Msa1298370:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_3:59203451-59203470 Msa1298370:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_3:59203563-59203582 Msa1298370:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_3:59203693-59203712 Msa1298370:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_3:59203999-59204018 Msa1298370:five_prime_UTR 20.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_3:59202461-59202480 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAT+GGG + chr8_3:59202510-59202529 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_3:59202571-59202590 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_3:59203016-59203035 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_3:59203062-59203081 Msa1298370:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_3:59203424-59203443 Msa1298370:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_3:59203451-59203470 Msa1298370:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_3:59203563-59203582 Msa1298370:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_3:59203693-59203712 Msa1298370:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_3:59203999-59204018 Msa1298370:five_prime_UTR 20.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_3:59202282-59202301 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+TGG + chr8_3:59202511-59202530 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_3:59202565-59202584 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_3:59202581-59202600 Msa1298370:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_3:59202618-59202637 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_3:59202623-59202642 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_3:59203081-59203100 Msa1298370:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_3:59203284-59203303 Msa1298370:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_3:59203894-59203913 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_3:59203998-59204017 Msa1298370:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_3:59204003-59204022 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_3:59204045-59204064 Msa1298370:five_prime_UTR 25.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_3:59202282-59202301 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+TGG + chr8_3:59202511-59202530 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_3:59202565-59202584 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_3:59202581-59202600 Msa1298370:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_3:59202618-59202637 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_3:59202623-59202642 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_3:59203081-59203100 Msa1298370:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_3:59203284-59203303 Msa1298370:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_3:59203894-59203913 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_3:59203998-59204017 Msa1298370:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_3:59204003-59204022 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_3:59204045-59204064 Msa1298370:five_prime_UTR 25.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_3:59202283-59202302 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_3:59202347-59202366 Msa1298370:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_3:59202399-59202418 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_3:59202400-59202419 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_3:59202453-59202472 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_3:59202589-59202608 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_3:59202655-59202674 Msa1298370:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_3:59202709-59202728 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_3:59202738-59202757 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_3:59202739-59202758 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_3:59202791-59202810 Msa1298370:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_3:59202832-59202851 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_3:59202933-59202952 Msa1298370:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_3:59202964-59202983 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_3:59202965-59202984 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_3:59202971-59202990 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_3:59203087-59203106 Msa1298370:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_3:59203088-59203107 Msa1298370:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_3:59203120-59203139 Msa1298370:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_3:59203290-59203309 Msa1298370:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_3:59203325-59203344 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_3:59203323-59203342 Msa1298370:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_3:59203361-59203380 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_3:59203550-59203569 Msa1298370:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_3:59203568-59203587 Msa1298370:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_3:59203569-59203588 Msa1298370:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_3:59203627-59203646 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_3:59203625-59203644 Msa1298370:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_3:59203781-59203800 Msa1298370:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_3:59203877-59203896 Msa1298370:five_prime_UTR 30.0%
!! AGATTGCATTTAAGTTGCTT+TGG - chr8_3:59203913-59203932 Msa1298370:five_prime_UTR 30.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_3:59202283-59202302 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_3:59202347-59202366 Msa1298370:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_3:59202399-59202418 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_3:59202400-59202419 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_3:59202453-59202472 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_3:59202589-59202608 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_3:59202655-59202674 Msa1298370:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_3:59202709-59202728 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_3:59202738-59202757 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_3:59202739-59202758 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_3:59202791-59202810 Msa1298370:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_3:59202832-59202851 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_3:59202933-59202952 Msa1298370:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_3:59202964-59202983 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_3:59202965-59202984 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_3:59202971-59202990 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_3:59203087-59203106 Msa1298370:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_3:59203088-59203107 Msa1298370:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_3:59203120-59203139 Msa1298370:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_3:59203290-59203309 Msa1298370:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_3:59203325-59203344 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_3:59203323-59203342 Msa1298370:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_3:59203361-59203380 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_3:59203550-59203569 Msa1298370:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_3:59203568-59203587 Msa1298370:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_3:59203569-59203588 Msa1298370:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_3:59203627-59203646 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_3:59203625-59203644 Msa1298370:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_3:59203781-59203800 Msa1298370:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_3:59203877-59203896 Msa1298370:five_prime_UTR 30.0%
!! AGATTGCATTTAAGTTGCTT+TGG - chr8_3:59203913-59203932 Msa1298370:five_prime_UTR 30.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_3:59202448-59202467 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_3:59202562-59202581 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_3:59202706-59202725 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_3:59202755-59202774 Msa1298370:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_3:59202790-59202809 Msa1298370:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_3:59202841-59202860 Msa1298370:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_3:59202842-59202861 Msa1298370:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_3:59202849-59202868 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_3:59202931-59202950 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_3:59202978-59202997 Msa1298370:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_3:59203089-59203108 Msa1298370:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_3:59203207-59203226 Msa1298370:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_3:59203260-59203279 Msa1298370:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_3:59203463-59203482 Msa1298370:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_3:59203482-59203501 Msa1298370:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_3:59203502-59203521 Msa1298370:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_3:59203598-59203617 Msa1298370:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_3:59203860-59203879 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_3:59203876-59203895 Msa1298370:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_3:59204124-59204143 None:intergenic 35.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_3:59202448-59202467 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_3:59202562-59202581 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_3:59202706-59202725 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_3:59202755-59202774 Msa1298370:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_3:59202790-59202809 Msa1298370:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_3:59202841-59202860 Msa1298370:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_3:59202842-59202861 Msa1298370:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_3:59202849-59202868 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_3:59202931-59202950 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_3:59202978-59202997 Msa1298370:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_3:59203089-59203108 Msa1298370:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_3:59203207-59203226 Msa1298370:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_3:59203260-59203279 Msa1298370:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_3:59203463-59203482 Msa1298370:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_3:59203482-59203501 Msa1298370:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_3:59203502-59203521 Msa1298370:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_3:59203598-59203617 Msa1298370:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_3:59203860-59203879 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_3:59203876-59203895 Msa1298370:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_3:59204124-59204143 None:intergenic 35.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_3:59202677-59202696 Msa1298370:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_3:59202696-59202715 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_3:59202766-59202785 Msa1298370:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_3:59202876-59202895 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_3:59203253-59203272 Msa1298370:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_3:59203344-59203363 Msa1298370:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_3:59204121-59204140 Msa1298370:five_prime_UTR 40.0%
AGGGAAACACCTCATAATTG+TGG + chr8_3:59202263-59202282 None:intergenic 40.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_3:59202677-59202696 Msa1298370:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_3:59202696-59202715 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_3:59202766-59202785 Msa1298370:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_3:59202876-59202895 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_3:59203253-59203272 Msa1298370:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_3:59203344-59203363 Msa1298370:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_3:59204121-59204140 Msa1298370:five_prime_UTR 40.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_3:59202387-59202406 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_3:59202388-59202407 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_3:59202519-59202538 Msa1298370:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_3:59202533-59202552 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_3:59202554-59202573 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_3:59202697-59202716 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_3:59202694-59202713 Msa1298370:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_3:59202855-59202874 Msa1298370:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_3:59202858-59202877 Msa1298370:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_3:59203340-59203359 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_3:59203466-59203485 Msa1298370:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_3:59203467-59203486 Msa1298370:CDS 45.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_3:59202387-59202406 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_3:59202388-59202407 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_3:59202519-59202538 Msa1298370:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_3:59202533-59202552 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_3:59202554-59202573 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_3:59202697-59202716 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_3:59202694-59202713 Msa1298370:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_3:59202855-59202874 Msa1298370:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_3:59202858-59202877 Msa1298370:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_3:59203340-59203359 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_3:59203466-59203485 Msa1298370:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_3:59203467-59203486 Msa1298370:CDS 45.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_3:59202384-59202403 None:intergenic 50.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_3:59202384-59202403 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 59202261 59204153 59202261 ID=Msa1298370;Name=Msa1298370
chr8_3 mRNA 59202261 59204153 59202261 ID=Msa1298370-mRNA-1;Parent=Msa1298370;Name=Msa1298370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=504|1|1|1|1|1|4|240|280
chr8_3 exon 59202261 59202704 59202261 ID=Msa1298370-mRNA-1:exon:17081;Parent=Msa1298370-mRNA-1
chr8_3 exon 59202795 59202941 59202795 ID=Msa1298370-mRNA-1:exon:17080;Parent=Msa1298370-mRNA-1
chr8_3 exon 59203049 59203305 59203049 ID=Msa1298370-mRNA-1:exon:17079;Parent=Msa1298370-mRNA-1
chr8_3 exon 59203415 59204153 59203415 ID=Msa1298370-mRNA-1:exon:17078;Parent=Msa1298370-mRNA-1
chr8_3 five_prime_UTR 59203650 59204153 59203650 ID=Msa1298370-mRNA-1:five_prime_utr;Parent=Msa1298370-mRNA-1
chr8_3 CDS 59203415 59203649 59203415 ID=Msa1298370-mRNA-1:cds;Parent=Msa1298370-mRNA-1
chr8_3 CDS 59203049 59203305 59203049 ID=Msa1298370-mRNA-1:cds;Parent=Msa1298370-mRNA-1
chr8_3 CDS 59202795 59202941 59202795 ID=Msa1298370-mRNA-1:cds;Parent=Msa1298370-mRNA-1
chr8_3 CDS 59202501 59202704 59202501 ID=Msa1298370-mRNA-1:cds;Parent=Msa1298370-mRNA-1
chr8_3 three_prime_UTR 59202261 59202500 59202261 ID=Msa1298370-mRNA-1:three_prime_utr;Parent=Msa1298370-mRNA-1
Gene Sequence

>Msa1298370

ATGCAGTCAAAGGTTACAAAGAGGTCAACGATCAACATGTTTTCAAGGGACAAAAAAAGTGACACCAATGTTCATGTCAATCCAAATGTAGCTGAATGGGAATTAAGACCAGGTGGAATGCTAGTACAAAAACGTAATTCAGATGTGAATGATAATTTTTCATCCATCATCAAAGTCAAAGTGAAGTATGGCTCATCCCATCACCAAATTCATATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTGACAGAATCAACAGGATTGCATGTTCAAGATCAGAAGTTGATTTTCAAGAAAAAAGAGAGAGACTCAAAGTCATATCTTGATATTGAGAGAGTCAAAGATGGATCAAAGTTGATTTTAATTGAAGACATCGAGAGTAGAGAAAGAAGGATATTGGAGAAATTAAGAATTGCAAAGAAGGAAAAGGCTTCAAAATCCTTAATTGAAGTAACCTTAGAGGTTGACAAACTTGCCAAAAAGGTTTCAGCTTTGGAGGGTAATGTTTCTAAAGGTGAAGTTATTTCAGAGTTGGATGTAGAGAGTTTAACAGAAAATTTGATGAGAGTATTGATTACATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAAAGAACAGGTTAGGAGAGTTCAGAAGCACATTGAGACTCTTGATATGTTAAAGATGTCAAAGTCAATTGAAAATAACAATAACATAACAAAGGAGAGTAAGGTTGATTGTGATGTTCAAAAGCAGCATTTGCAAGAGAAGCAACAAGAACAACAACCTTTGAAACATTCTGAGTCAGTTGTAGTAACAACCAAATGGGAAACTTTTGATTAA

Protein sequence

>Msa1298370

MQSKVTKRSTINMFSRDKKSDTNVHVNPNVAEWELRPGGMLVQKRNSDVNDNFSSIIKVKVKYGSSHHQIHISSHASFGELKKMLTESTGLHVQDQKLIFKKKERDSKSYLDIERVKDGSKLILIEDIESRERRILEKLRIAKKEKASKSLIEVTLEVDKLAKKVSALEGNVSKGEVISELDVESLTENLMRVLITLDEIYGEGELKLQRKEQVRRVQKHIETLDMLKMSKSIENNNNITKESKVDCDVQKQHLQEKQQEQQPLKHSESVVVTTKWETFD*