AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258340 MtrunA17_Chr4g0057261 96.071 280 10 1 1 279 1 280 0.0 533
Msa1258340 MtrunA17_Chr6g0473621 46.053 304 116 4 20 279 22 321 3.79e-79 243
Msa1258340 MtrunA17_Chr1g0203771 47.183 284 118 3 28 279 18 301 3.60e-76 235
Msa1258340 MtrunA17_Chr2g0285591 40.323 248 113 5 32 278 30 243 7.99e-54 175
Msa1258340 MtrunA17_Chr7g0243051 44.554 202 111 1 32 232 19 220 1.71e-47 158
Msa1258340 MtrunA17_Chr4g0007601 37.238 239 138 2 47 279 19 251 8.40e-41 141
Msa1258340 MtrunA17_Chr6g0458281 41.176 119 61 2 24 136 22 137 3.31e-21 87.4
Msa1258340 MtrunA17_Chr6g0458271 43.810 105 57 1 32 136 38 140 4.34e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258340 AT5G52060.1 45.848 277 117 4 34 279 41 315 9.20e-71 222
Msa1258340 AT5G62100.2 44.622 251 133 3 31 279 14 260 7.04e-66 207
Msa1258340 AT5G07220.1 43.846 260 133 3 32 279 21 279 3.24e-65 206
Msa1258340 AT5G62100.1 43.130 262 132 5 31 279 14 271 8.88e-63 200
Msa1258340 AT5G62100.5 50.543 184 90 1 31 214 14 196 2.15e-56 180
Msa1258340 AT5G62100.4 50.000 184 91 1 31 214 14 196 7.66e-56 179
Msa1258340 AT3G51780.1 36.502 263 123 5 31 278 9 242 5.08e-46 155
Msa1258340 AT5G62100.3 53.676 136 62 1 31 166 14 148 7.06e-44 146
Msa1258340 AT5G62100.6 53.676 136 62 1 31 166 14 148 7.06e-44 146
Msa1258340 AT5G14360.1 40.000 105 60 1 33 137 49 150 2.71e-20 85.9
Msa1258340 AT5G40630.1 39.815 108 62 2 26 132 50 155 1.40e-19 84.0

Find 70 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTATTTGACTTATTATA+TGG 0.159749 8_2:-59559591 Msa1258340:three_prime_UTR
ATTACATTGGATGAAATTTA+TGG 0.207184 8_2:-59560021 Msa1258340:CDS
CTCTAAGGTTACTTCAATTA+AGG 0.213411 8_2:+59560264 None:intergenic
ATTGGTATAATTTAGAAGTT+TGG 0.256429 8_2:+59561013 None:intergenic
TTATACCAATCTTACTCTTT+TGG 0.272341 8_2:-59561000 Msa1258340:five_prime_UTR
CTTAATTGAAGTAACCTTAG+AGG 0.272826 8_2:-59560263 Msa1258340:CDS
CATGAGAACTGATATGAATT+TGG 0.287339 8_2:+59560613 None:intergenic
ATCAGTTCTCATGCAAGTTT+TGG 0.294978 8_2:-59560603 Msa1258340:intron
GGTTGACAAACTTGCCAAAA+AGG 0.303391 8_2:-59560242 Msa1258340:intron
GGCAAGTTTGTCAACCTCTA+AGG 0.306312 8_2:+59560249 None:intergenic
AAGATTGCATTTAGTTGCTT+TGG 0.328022 8_2:-59559674 Msa1258340:three_prime_UTR
TTCAACTCTATTTAATTCAA+TGG 0.336562 8_2:-59559544 Msa1258340:three_prime_UTR
GTTTGGAGTTGGTGGTGTTT+TGG 0.336722 8_2:+59561030 None:intergenic
AGAAATTGCTTTCCTTTGAA+TGG 0.337098 8_2:+59560875 None:intergenic
TCCTATTTGACTTATTATAT+GGG 0.362984 8_2:-59559590 Msa1258340:three_prime_UTR
ATCAAAGTCAAAGTGAAGTA+TGG 0.369232 8_2:-59560648 Msa1258340:CDS
GAGTAGAGAAAGAAGGATAT+TGG 0.370067 8_2:-59560326 Msa1258340:CDS
CTTCACTTTGACTTTGATGA+TGG 0.373301 8_2:+59560653 None:intergenic
AATTCCCATTCAGCTACATT+TGG 0.373777 8_2:+59560735 None:intergenic
GTTGTTCTTTCTTCTTCCCT+AGG 0.373805 8_2:-59560904 Msa1258340:five_prime_UTR
TTAATCAAAAGTTTCCCATT+TGG 0.385906 8_2:+59559695 None:intergenic
TCCCATATAATAAGTCAAAT+AGG 0.395520 8_2:+59559589 None:intergenic
CAATCCAAATGTAGCTGAAT+GGG 0.407553 8_2:-59560739 Msa1258340:CDS
AAAGACCAAAAGAGTAAGAT+TGG 0.428824 8_2:+59560995 None:intergenic
TTTGCTTGATAGAGCTAAAA+GGG 0.445662 8_2:+59560846 None:intergenic
TAACATAACAAAGGAGAGTA+AGG 0.457931 8_2:-59559802 Msa1258340:CDS
ATTTAGAAGTTTGGAGTTGG+TGG 0.458164 8_2:+59561022 None:intergenic
TCAATCCAAATGTAGCTGAA+TGG 0.461891 8_2:-59560740 Msa1258340:CDS
TTGGAGGGTAATGTTTCTAA+AGG 0.464546 8_2:-59560102 Msa1258340:CDS
AAGAATTGCAAAGAAGGAAA+AGG 0.466398 8_2:-59560296 Msa1258340:CDS
GAAATTGCAGAGAAAAGAAC+AGG 0.476993 8_2:-59559986 Msa1258340:intron
AGAGAAAAGGAGAAAAGGAA+TGG 0.482493 8_2:+59561136 None:intergenic
GAAATTAAGAATTGCAAAGA+AGG 0.485109 8_2:-59560302 Msa1258340:CDS
TAGTTGTAGTAACAACCAAA+TGG 0.485969 8_2:-59559710 Msa1258340:CDS
CCTTTGAATGGAGGAAACCT+AGG 0.486487 8_2:+59560887 None:intergenic
TTTGTAGGTTTCAGCTTTGG+AGG 0.486816 8_2:-59560118 Msa1258340:intron
CCTAGGTTTCCTCCATTCAA+AGG 0.488881 8_2:-59560887 Msa1258340:five_prime_UTR
AGGTGAAGTTATTTCAGAGT+TGG 0.494651 8_2:-59560082 Msa1258340:CDS
AACAATATAGCACAATTATG+AGG 0.503406 8_2:-59561330 None:intergenic
AGTCAAAGATGGATCAAAGT+TGG 0.504321 8_2:-59560368 Msa1258340:CDS
ATAATTTAGAAGTTTGGAGT+TGG 0.511890 8_2:+59561019 None:intergenic
GGTAGAAGAAATTAATGTGA+AGG 0.518137 8_2:+59561301 None:intergenic
AGTTGTAGTAACAACCAAAT+GGG 0.521225 8_2:-59559709 Msa1258340:CDS
AATAGAAGAATGAAAAGGAA+TGG 0.527636 8_2:+59560966 None:intergenic
AACTGATATGAATTTGGTGA+TGG 0.530668 8_2:+59560619 None:intergenic
AAAATGGGAGTGAGTGAGGG+AGG 0.530788 8_2:+59561200 None:intergenic
AGTGAAATAGAAGAATGAAA+AGG 0.536106 8_2:+59560961 None:intergenic
AATTGCTTTCCTTTGAATGG+AGG 0.546291 8_2:+59560878 None:intergenic
AGAGACTTTCTATCAAATCA+AGG 0.547417 8_2:-59561234 Msa1258340:five_prime_UTR
GATATTGAGAGAGTCAAAGA+TGG 0.547900 8_2:-59560379 Msa1258340:CDS
TTTCACTTTCACCGACAGCT+AGG 0.553520 8_2:-59561062 Msa1258340:five_prime_UTR
ACTATCTCAGAATGTTTCAA+AGG 0.554562 8_2:+59559729 None:intergenic
GATGAGAGTATTGATTACAT+TGG 0.562495 8_2:-59560034 Msa1258340:CDS
TTGGATGAAATTTATGGTGA+GGG 0.566235 8_2:-59560015 Msa1258340:CDS
CTTTGAATGGAGGAAACCTA+GGG 0.567548 8_2:+59560888 None:intergenic
AAAACTTGCAATGCAGTCAA+AGG 0.573016 8_2:-59560826 Msa1258340:exon
ACATTGAGAGTAGAGAAAGA+AGG 0.578801 8_2:-59560333 Msa1258340:CDS
TTGTAGGTTTCAGCTTTGGA+GGG 0.580586 8_2:-59560117 Msa1258340:intron
ATTTGGATTGACATGAACAT+TGG 0.587267 8_2:+59560752 None:intergenic
GTAGAAGAAATTAATGTGAA+GGG 0.597323 8_2:+59561302 None:intergenic
AAAATGTTGACAGAATCTAC+AGG 0.604406 8_2:-59560466 Msa1258340:CDS
CCACTCACACATATATAACA+CGG 0.615934 8_2:+59559467 None:intergenic
GGTGAAAACAACCTAGCTGT+CGG 0.625319 8_2:+59561051 None:intergenic
GCTGAATGGGAATTAAGACC+AGG 0.631294 8_2:-59560726 Msa1258340:CDS
ACTGATATGAATTTGGTGAT+GGG 0.633798 8_2:+59560620 None:intergenic
CCGTGTTATATATGTGTGAG+TGG 0.636609 8_2:-59559467 Msa1258340:three_prime_UTR
ATTGGATGAAATTTATGGTG+AGG 0.644553 8_2:-59560016 Msa1258340:CDS
TGCAGTCAAAGGTTACAAAG+AGG 0.668299 8_2:-59560815 Msa1258340:CDS
GAATGGGAATTAAGACCAGG+TGG 0.675489 8_2:-59560723 Msa1258340:CDS
AGATAACAATAACATAACAA+AGG 0.682250 8_2:-59559811 Msa1258340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_2:59559503-59559522 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_2:59559504-59559523 Msa1258340:three_prime_UTR 10.0%
!! TAATCAATTAAAATTACAAT+AGG + chr8_2:59560237-59560256 None:intergenic 10.0%
!! AAATATAAAATTTAATGTGT+AGG - chr8_2:59560882-59560901 Msa1258340:five_prime_UTR 10.0%
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_2:59559503-59559522 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_2:59559504-59559523 Msa1258340:three_prime_UTR 10.0%
!! TAATCAATTAAAATTACAAT+AGG + chr8_2:59560237-59560256 None:intergenic 10.0%
!! AAATATAAAATTTAATGTGT+AGG - chr8_2:59560882-59560901 Msa1258340:five_prime_UTR 10.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_2:59559500-59559519 None:intergenic 15.0%
!!! ATAATTCAATGAAATTTTGT+AGG - chr8_2:59560644-59560663 Msa1258340:CDS 15.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_2:59559500-59559519 None:intergenic 15.0%
!!! ATAATTCAATGAAATTTTGT+AGG - chr8_2:59560644-59560663 Msa1258340:CDS 15.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_2:59559657-59559676 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_2:59559706-59559725 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_2:59559767-59559786 None:intergenic 20.0%
!! AATTAAAATTACAATAGGCA+AGG + chr8_2:59560232-59560251 None:intergenic 20.0%
!!! TTGATTGATGATGATTATTA+TGG - chr8_2:59560263-59560282 Msa1258340:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_2:59560756-59560775 Msa1258340:CDS 20.0%
!! TAAAATTTAATGTGTAGGTT+AGG - chr8_2:59560887-59560906 Msa1258340:five_prime_UTR 20.0%
!! AGATAACAATAACATAACAA+AGG - chr8_2:59560966-59560985 Msa1258340:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_2:59561187-59561206 Msa1258340:five_prime_UTR 20.0%
!! TTCAACTCTATTTAATTCAA+TGG - chr8_2:59561233-59561252 Msa1258340:five_prime_UTR 20.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_2:59559657-59559676 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_2:59559706-59559725 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_2:59559767-59559786 None:intergenic 20.0%
!! AATTAAAATTACAATAGGCA+AGG + chr8_2:59560232-59560251 None:intergenic 20.0%
!!! TTGATTGATGATGATTATTA+TGG - chr8_2:59560263-59560282 Msa1258340:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_2:59560756-59560775 Msa1258340:CDS 20.0%
!! TAAAATTTAATGTGTAGGTT+AGG - chr8_2:59560887-59560906 Msa1258340:five_prime_UTR 20.0%
!! AGATAACAATAACATAACAA+AGG - chr8_2:59560966-59560985 Msa1258340:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_2:59561187-59561206 Msa1258340:five_prime_UTR 20.0%
!! TTCAACTCTATTTAATTCAA+TGG - chr8_2:59561233-59561252 Msa1258340:five_prime_UTR 20.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_2:59559478-59559497 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_2:59559707-59559726 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_2:59559761-59559780 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_2:59559777-59559796 Msa1258340:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_2:59559814-59559833 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_2:59559819-59559838 None:intergenic 25.0%
! AGGTATAAAGGAAATTCTAA+AGG + chr8_2:59560212-59560231 None:intergenic 25.0%
!! GATGATTATTATGGTTTTTG+TGG - chr8_2:59560272-59560291 Msa1258340:CDS 25.0%
!!! ATCAAAGTTGGTTTTAATTG+AGG - chr8_2:59560421-59560440 Msa1258340:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_2:59560475-59560494 Msa1258340:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_2:59561085-59561104 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_2:59561186-59561205 Msa1258340:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_2:59561191-59561210 None:intergenic 25.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_2:59559478-59559497 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_2:59559707-59559726 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_2:59559761-59559780 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_2:59559777-59559796 Msa1258340:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_2:59559814-59559833 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_2:59559819-59559838 None:intergenic 25.0%
! AGGTATAAAGGAAATTCTAA+AGG + chr8_2:59560212-59560231 None:intergenic 25.0%
!! GATGATTATTATGGTTTTTG+TGG - chr8_2:59560272-59560291 Msa1258340:CDS 25.0%
!!! ATCAAAGTTGGTTTTAATTG+AGG - chr8_2:59560421-59560440 Msa1258340:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_2:59560475-59560494 Msa1258340:CDS 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_2:59561085-59561104 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_2:59561186-59561205 Msa1258340:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_2:59561191-59561210 None:intergenic 25.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_2:59559479-59559498 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_2:59559543-59559562 Msa1258340:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_2:59559595-59559614 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_2:59559596-59559615 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_2:59559649-59559668 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_2:59559785-59559804 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_2:59559851-59559870 Msa1258340:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_2:59559905-59559924 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_2:59559934-59559953 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_2:59559935-59559954 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_2:59559987-59560006 Msa1258340:CDS 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_2:59560028-59560047 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_2:59560129-59560148 Msa1258340:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_2:59560160-59560179 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_2:59560161-59560180 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_2:59560167-59560186 None:intergenic 30.0%
TTACAATAGGCAAGGTATAA+AGG + chr8_2:59560224-59560243 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_2:59560278-59560297 Msa1258340:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_2:59560279-59560298 Msa1258340:CDS 30.0%
AAAATGTTGACAGAATCTAC+AGG - chr8_2:59560311-59560330 Msa1258340:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_2:59560481-59560500 Msa1258340:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_2:59560516-59560535 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_2:59560514-59560533 Msa1258340:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_2:59560552-59560571 None:intergenic 30.0%
! AATTTTGTAGGTTTCAGCTT+TGG - chr8_2:59560656-59560675 Msa1258340:CDS 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_2:59560743-59560762 Msa1258340:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_2:59560761-59560780 Msa1258340:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_2:59560762-59560781 Msa1258340:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_2:59560820-59560839 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_2:59560818-59560837 Msa1258340:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_2:59560975-59560994 Msa1258340:five_prime_UTR 30.0%
ACTATCTCAGAATGTTTCAA+AGG + chr8_2:59561051-59561070 None:intergenic 30.0%
TAGTTGTAGTAACAACCAAA+TGG - chr8_2:59561067-59561086 Msa1258340:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_2:59561068-59561087 Msa1258340:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_2:59561103-59561122 Msa1258340:five_prime_UTR 30.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_2:59559479-59559498 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_2:59559543-59559562 Msa1258340:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_2:59559595-59559614 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_2:59559596-59559615 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_2:59559649-59559668 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_2:59559785-59559804 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_2:59559851-59559870 Msa1258340:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_2:59559905-59559924 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_2:59559934-59559953 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_2:59559935-59559954 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_2:59559987-59560006 Msa1258340:CDS 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_2:59560028-59560047 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_2:59560129-59560148 Msa1258340:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_2:59560160-59560179 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_2:59560161-59560180 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_2:59560167-59560186 None:intergenic 30.0%
TTACAATAGGCAAGGTATAA+AGG + chr8_2:59560224-59560243 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_2:59560278-59560297 Msa1258340:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_2:59560279-59560298 Msa1258340:CDS 30.0%
AAAATGTTGACAGAATCTAC+AGG - chr8_2:59560311-59560330 Msa1258340:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_2:59560481-59560500 Msa1258340:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_2:59560516-59560535 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_2:59560514-59560533 Msa1258340:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_2:59560552-59560571 None:intergenic 30.0%
! AATTTTGTAGGTTTCAGCTT+TGG - chr8_2:59560656-59560675 Msa1258340:CDS 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_2:59560743-59560762 Msa1258340:CDS 30.0%
ATTGGATGAAATTTATGGTG+AGG - chr8_2:59560761-59560780 Msa1258340:CDS 30.0%
TTGGATGAAATTTATGGTGA+GGG - chr8_2:59560762-59560781 Msa1258340:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_2:59560820-59560839 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_2:59560818-59560837 Msa1258340:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_2:59560975-59560994 Msa1258340:five_prime_UTR 30.0%
ACTATCTCAGAATGTTTCAA+AGG + chr8_2:59561051-59561070 None:intergenic 30.0%
TAGTTGTAGTAACAACCAAA+TGG - chr8_2:59561067-59561086 Msa1258340:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_2:59561068-59561087 Msa1258340:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_2:59561103-59561122 Msa1258340:five_prime_UTR 30.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_2:59559644-59559663 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_2:59559758-59559777 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_2:59559902-59559921 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_2:59559951-59559970 Msa1258340:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_2:59559986-59560005 Msa1258340:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_2:59560037-59560056 Msa1258340:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_2:59560038-59560057 Msa1258340:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_2:59560045-59560064 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_2:59560127-59560146 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_2:59560174-59560193 Msa1258340:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_2:59560280-59560299 Msa1258340:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_2:59560398-59560417 Msa1258340:CDS 35.0%
AGTCAAAGATGGATCAAAGT+TGG - chr8_2:59560409-59560428 Msa1258340:CDS 35.0%
ACATTGAGAGTAGAGAAAGA+AGG - chr8_2:59560444-59560463 Msa1258340:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_2:59560451-59560470 Msa1258340:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_2:59560675-59560694 Msa1258340:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_2:59560695-59560714 Msa1258340:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_2:59560791-59560810 Msa1258340:CDS 35.0%
CCACTCACACATATATAACA+CGG + chr8_2:59561313-59561332 None:intergenic 35.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_2:59559644-59559663 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_2:59559758-59559777 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_2:59559902-59559921 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_2:59559951-59559970 Msa1258340:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_2:59559986-59560005 Msa1258340:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_2:59560037-59560056 Msa1258340:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_2:59560038-59560057 Msa1258340:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_2:59560045-59560064 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_2:59560127-59560146 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_2:59560174-59560193 Msa1258340:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_2:59560280-59560299 Msa1258340:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_2:59560398-59560417 Msa1258340:CDS 35.0%
AGTCAAAGATGGATCAAAGT+TGG - chr8_2:59560409-59560428 Msa1258340:CDS 35.0%
ACATTGAGAGTAGAGAAAGA+AGG - chr8_2:59560444-59560463 Msa1258340:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_2:59560451-59560470 Msa1258340:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_2:59560675-59560694 Msa1258340:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_2:59560695-59560714 Msa1258340:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_2:59560791-59560810 Msa1258340:CDS 35.0%
CCACTCACACATATATAACA+CGG + chr8_2:59561313-59561332 None:intergenic 35.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_2:59559873-59559892 Msa1258340:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_2:59559892-59559911 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_2:59559962-59559981 Msa1258340:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_2:59560072-59560091 None:intergenic 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_2:59560535-59560554 Msa1258340:intron 40.0%
! TTTGTAGGTTTCAGCTTTGG+AGG - chr8_2:59560659-59560678 Msa1258340:CDS 40.0%
!! TTGTAGGTTTCAGCTTTGGA+GGG - chr8_2:59560660-59560679 Msa1258340:CDS 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_2:59561310-59561329 Msa1258340:five_prime_UTR 40.0%
AGGGAAACACCTCATAATTG+TGG + chr8_2:59559459-59559478 None:intergenic 40.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_2:59559873-59559892 Msa1258340:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_2:59559892-59559911 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_2:59559962-59559981 Msa1258340:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_2:59560072-59560091 None:intergenic 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_2:59560535-59560554 Msa1258340:intron 40.0%
! TTTGTAGGTTTCAGCTTTGG+AGG - chr8_2:59560659-59560678 Msa1258340:CDS 40.0%
!! TTGTAGGTTTCAGCTTTGGA+GGG - chr8_2:59560660-59560679 Msa1258340:CDS 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_2:59561310-59561329 Msa1258340:five_prime_UTR 40.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_2:59559583-59559602 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_2:59559584-59559603 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_2:59559715-59559734 Msa1258340:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_2:59559729-59559748 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_2:59559750-59559769 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_2:59559893-59559912 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_2:59559890-59559909 Msa1258340:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_2:59560051-59560070 Msa1258340:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_2:59560054-59560073 Msa1258340:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_2:59560531-59560550 None:intergenic 45.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_2:59559583-59559602 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_2:59559584-59559603 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_2:59559715-59559734 Msa1258340:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_2:59559729-59559748 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_2:59559750-59559769 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_2:59559893-59559912 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_2:59559890-59559909 Msa1258340:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_2:59560051-59560070 Msa1258340:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_2:59560054-59560073 Msa1258340:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_2:59560531-59560550 None:intergenic 45.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_2:59559580-59559599 None:intergenic 50.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_2:59559580-59559599 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 59559457 59561342 59559457 ID=Msa1258340;Name=Msa1258340
chr8_2 mRNA 59559457 59561342 59559457 ID=Msa1258340-mRNA-1;Parent=Msa1258340;Name=Msa1258340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=504|1|1|1|1|1|4|238|279
chr8_2 exon 59559457 59559895 59559457 ID=Msa1258340-mRNA-1:exon:18509;Parent=Msa1258340-mRNA-1
chr8_2 exon 59559987 59560133 59559987 ID=Msa1258340-mRNA-1:exon:18508;Parent=Msa1258340-mRNA-1
chr8_2 exon 59560243 59560499 59560243 ID=Msa1258340-mRNA-1:exon:18507;Parent=Msa1258340-mRNA-1
chr8_2 exon 59560604 59561342 59560604 ID=Msa1258340-mRNA-1:exon:18506;Parent=Msa1258340-mRNA-1
chr8_2 five_prime_UTR 59560839 59561342 59560839 ID=Msa1258340-mRNA-1:five_prime_utr;Parent=Msa1258340-mRNA-1
chr8_2 CDS 59560604 59560838 59560604 ID=Msa1258340-mRNA-1:cds;Parent=Msa1258340-mRNA-1
chr8_2 CDS 59560243 59560499 59560243 ID=Msa1258340-mRNA-1:cds;Parent=Msa1258340-mRNA-1
chr8_2 CDS 59559987 59560133 59559987 ID=Msa1258340-mRNA-1:cds;Parent=Msa1258340-mRNA-1
chr8_2 CDS 59559695 59559895 59559695 ID=Msa1258340-mRNA-1:cds;Parent=Msa1258340-mRNA-1
chr8_2 three_prime_UTR 59559457 59559694 59559457 ID=Msa1258340-mRNA-1:three_prime_utr;Parent=Msa1258340-mRNA-1
Gene Sequence

>Msa1258340

ATGCAGTCAAAGGTTACAAAGAGGTCAACGATCAACATGTTTTCAAGGGACAAAAAAAGTGACACCAATGTTCATGTCAATCCAAATGTAGCTGAATGGGAATTAAGACCAGGTGGAATGCTAGTACAAAAACGTAATTCAGATGTGAATGATAATTTTTCATCCATCATCAAAGTCAAAGTGAAGTATGGCTCATCCCATCACCAAATTCATATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTGACAGAATCTACAGGATTGCATGTTCAAGATCAGAAGTTGATTTTCAAGAAAAAAGAGAGAGATTCAAAGTCATATCTTGATATTGAGAGAGTCAAAGATGGATCAAAGTTGGTTTTAATTGAGGACATTGAGAGTAGAGAAAGAAGGATATTGGAGAAATTAAGAATTGCAAAGAAGGAAAAGGCTTCAAAATCCTTAATTGAAGTAACCTTAGAGGTTGACAAACTTGCCAAAAAGGTTTCAGCTTTGGAGGGTAATGTTTCTAAAGGTGAAGTTATTTCAGAGTTGGATGTAGAGAGTTTAACAGAAAATTTGATGAGAGTATTGATTACATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAAAGAACAGGTTAGGAGAGTTCAGAAGCACATTGAGACTCTTGATATGTTAAAGATGTCAAAGTCAATTGAAGATAACAATAACATAACAAAGGAGAGTAAGGTTGATTGTGATGTTCAAAAGCAGCATTTGCAAGAGAAGCAACAAGAACAACCTTTGAAACATTCTGAGATAGTTGTAGTAACAACCAAATGGGAAACTTTTGATTAA

Protein sequence

>Msa1258340

MQSKVTKRSTINMFSRDKKSDTNVHVNPNVAEWELRPGGMLVQKRNSDVNDNFSSIIKVKVKYGSSHHQIHISSHASFGELKKMLTESTGLHVQDQKLIFKKKERDSKSYLDIERVKDGSKLVLIEDIESRERRILEKLRIAKKEKASKSLIEVTLEVDKLAKKVSALEGNVSKGEVISELDVESLTENLMRVLITLDEIYGEGELKLQRKEQVRRVQKHIETLDMLKMSKSIEDNNNITKESKVDCDVQKQHLQEKQQEQPLKHSEIVVVTTKWETFD*