AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208430 MtrunA17_Chr4g0057261 96.786 280 8 1 1 279 1 280 0.0 536
Msa1208430 MtrunA17_Chr6g0473621 45.395 304 118 5 20 279 22 321 1.92e-76 236
Msa1208430 MtrunA17_Chr1g0203771 47.552 286 114 6 28 279 18 301 2.06e-73 228
Msa1208430 MtrunA17_Chr2g0285591 39.357 249 114 6 32 278 30 243 9.87e-51 167
Msa1208430 MtrunA17_Chr7g0243051 44.059 202 111 2 32 231 19 220 8.93e-45 151
Msa1208430 MtrunA17_Chr4g0007601 36.752 234 119 3 47 279 19 224 7.97e-38 134
Msa1208430 MtrunA17_Chr6g0458281 41.176 119 61 2 24 136 22 137 2.68e-21 87.8
Msa1208430 MtrunA17_Chr6g0458271 43.810 105 57 1 32 136 38 140 3.14e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208430 AT5G52060.1 46.182 275 119 4 34 279 41 315 7.82e-70 219
Msa1208430 AT5G62100.2 44.841 252 131 4 31 279 14 260 6.56e-64 202
Msa1208430 AT5G07220.1 44.231 260 132 5 32 279 21 279 1.41e-62 199
Msa1208430 AT5G62100.1 43.346 263 130 6 31 279 14 271 1.18e-60 194
Msa1208430 AT5G62100.5 50.543 184 89 2 31 213 14 196 4.87e-54 174
Msa1208430 AT5G62100.4 50.000 184 90 2 31 213 14 196 3.04e-53 172
Msa1208430 AT5G62100.3 54.412 136 61 1 31 166 14 148 3.01e-44 147
Msa1208430 AT5G62100.6 54.412 136 61 1 31 166 14 148 3.01e-44 147
Msa1208430 AT3G51780.1 35.606 264 124 6 31 278 9 242 3.71e-43 148
Msa1208430 AT5G14360.1 40.000 105 60 1 33 137 49 150 1.87e-20 86.3
Msa1208430 AT5G40630.1 39.815 108 62 2 26 132 50 155 1.13e-19 84.0

Find 68 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTATTTGACTTATTATA+TGG 0.159749 8_1:-66548958 Msa1208430:three_prime_UTR
ATTACATTGGATGAAATTTA+TGG 0.207184 8_1:-66549387 Msa1208430:CDS
CTCTAAGGTTACTTCAATTA+AGG 0.213411 8_1:+66549628 None:intergenic
ATTGGTATAATTTAGAAGTT+TGG 0.256429 8_1:+66550382 None:intergenic
TTATACCAATCTTACTCTTT+TGG 0.272341 8_1:-66550369 Msa1208430:five_prime_UTR
CTTAATTGAAGTAACCTTAG+AGG 0.272826 8_1:-66549627 Msa1208430:CDS
CATGAGAACTGATATGAATT+TGG 0.287339 8_1:+66549982 None:intergenic
ATCAGTTCTCATGCAAGTTT+TGG 0.294978 8_1:-66549972 Msa1208430:intron
GGTTGACAAACTTGCCAAAA+AGG 0.303391 8_1:-66549606 Msa1208430:intron
GGCAAGTTTGTCAACCTCTA+AGG 0.306312 8_1:+66549613 None:intergenic
AAGATTGCATTTAGTTGCTT+TGG 0.328022 8_1:-66549041 Msa1208430:three_prime_UTR
TTCAGCTCTATTTAATTCAA+TGG 0.336562 8_1:-66548911 Msa1208430:three_prime_UTR
GTTTGGAGTTGGTGGTGTTT+TGG 0.336722 8_1:+66550399 None:intergenic
AGAAATTGCTTTCCTTTGAA+TGG 0.337098 8_1:+66550244 None:intergenic
GAGTAGAGAAAGAAGGATAT+TGG 0.354055 8_1:-66549690 Msa1208430:CDS
TCCTATTTGACTTATTATAT+GGG 0.362984 8_1:-66548957 Msa1208430:three_prime_UTR
ATCAAAGTCAAAGTGAAGTA+TGG 0.369232 8_1:-66550017 Msa1208430:CDS
CTTCACTTTGACTTTGATGA+TGG 0.373301 8_1:+66550022 None:intergenic
AATTCCCATTCAGCTACATT+TGG 0.373777 8_1:+66550104 None:intergenic
GTTGTTCTTTCTTCTTCCCT+AGG 0.373805 8_1:-66550273 Msa1208430:five_prime_UTR
TTAATCAAAAGTTTCCCATT+TGG 0.385906 8_1:+66549062 None:intergenic
TCCCATATAATAAGTCAAAT+AGG 0.395520 8_1:+66548956 None:intergenic
CAATCCAAATGTAGCTGAAT+GGG 0.407553 8_1:-66550108 Msa1208430:CDS
AAAGACCAAAAGAGTAAGAT+TGG 0.428824 8_1:+66550364 None:intergenic
AATTTGGTAGGTTTCAGCTT+TGG 0.444763 8_1:-66549487 Msa1208430:intron
TTTGCTTGATAGAGCTAAAA+GGG 0.445662 8_1:+66550215 None:intergenic
TAACATAACAAAGGAGAGTA+AGG 0.457931 8_1:-66549172 Msa1208430:CDS
ATTTAGAAGTTTGGAGTTGG+TGG 0.458164 8_1:+66550391 None:intergenic
TCAATCCAAATGTAGCTGAA+TGG 0.461891 8_1:-66550109 Msa1208430:CDS
TTGGAGGGTAATGTTTCTAA+AGG 0.464546 8_1:-66549468 Msa1208430:CDS
AAGAATTGCAAAGAAGGAAA+AGG 0.466398 8_1:-66549660 Msa1208430:CDS
GAAATTGCAGAGAAAAGAAC+AGG 0.476993 8_1:-66549355 Msa1208430:intron
CAGTTGTAGTAACAACCAAA+TGG 0.480586 8_1:-66549077 Msa1208430:CDS
TTGGTAGGTTTCAGCTTTGG+AGG 0.481735 8_1:-66549484 Msa1208430:intron
AGAGAAAAGGAGAAAAGGAA+TGG 0.482493 8_1:+66550505 None:intergenic
GAAATTAAGAATTGCAAAGA+AGG 0.485109 8_1:-66549666 Msa1208430:CDS
CCTTTGAATGGAGGAAACCT+AGG 0.486487 8_1:+66550256 None:intergenic
CCTAGGTTTCCTCCATTCAA+AGG 0.488881 8_1:-66550256 Msa1208430:five_prime_UTR
AGGTGAAGTTATTTCAGAGT+TGG 0.494651 8_1:-66549448 Msa1208430:CDS
AACAATATAGCACAATTATG+AGG 0.503406 8_1:-66550699 None:intergenic
ATAATTTAGAAGTTTGGAGT+TGG 0.511890 8_1:+66550388 None:intergenic
GGTAGAAGAAATTAATGTGA+AGG 0.518137 8_1:+66550670 None:intergenic
AGTTGTAGTAACAACCAAAT+GGG 0.521225 8_1:-66549076 Msa1208430:CDS
AATAGAAGAATGAAAAGGAA+TGG 0.527636 8_1:+66550335 None:intergenic
AACTGATATGAATTTGGTGA+TGG 0.530668 8_1:+66549988 None:intergenic
AAAATGGGAGTGAGTGAGGG+AGG 0.530788 8_1:+66550569 None:intergenic
AGTGAAATAGAAGAATGAAA+AGG 0.536106 8_1:+66550330 None:intergenic
AAAATGTTGACAGAATCAAC+AGG 0.539679 8_1:-66549830 Msa1208430:CDS
AATTGCTTTCCTTTGAATGG+AGG 0.546291 8_1:+66550247 None:intergenic
AGAGACTTTCTATCAAATCA+AGG 0.547417 8_1:-66550603 Msa1208430:five_prime_UTR
GATATTGAGAGAGTCAAAGA+TGG 0.547900 8_1:-66549743 Msa1208430:CDS
TTTCACTTTCACCGACAGCT+AGG 0.553520 8_1:-66550431 Msa1208430:five_prime_UTR
ACATCGAGAGTAGAGAAAGA+AGG 0.558063 8_1:-66549697 Msa1208430:CDS
ACTGACTCAGAATGTTTCAA+AGG 0.560272 8_1:+66549096 None:intergenic
GATGAGAGTATTGATTACAT+TGG 0.562495 8_1:-66549400 Msa1208430:CDS
CTTTGAATGGAGGAAACCTA+GGG 0.567548 8_1:+66550257 None:intergenic
AAAACTTGCAATGCAGTCAA+AGG 0.573016 8_1:-66550195 Msa1208430:exon
TGGTAGGTTTCAGCTTTGGA+GGG 0.580586 8_1:-66549483 Msa1208430:intron
ATTTGGATTGACATGAACAT+TGG 0.587267 8_1:+66550121 None:intergenic
GTAGAAGAAATTAATGTGAA+GGG 0.597323 8_1:+66550671 None:intergenic
CCACTCACACATATATAACA+CGG 0.615934 8_1:+66548835 None:intergenic
GGTGAAAACAACCTAGCTGT+CGG 0.625319 8_1:+66550420 None:intergenic
GCTGAATGGGAATTAAGACC+AGG 0.631294 8_1:-66550095 Msa1208430:CDS
ACTGATATGAATTTGGTGAT+GGG 0.633798 8_1:+66549989 None:intergenic
CCGTGTTATATATGTGTGAG+TGG 0.636609 8_1:-66548835 Msa1208430:three_prime_UTR
TGCAGTCAAAGGTTACAAAG+AGG 0.668299 8_1:-66550184 Msa1208430:CDS
GAATGGGAATTAAGACCAGG+TGG 0.675489 8_1:-66550092 Msa1208430:CDS
AAATAACAATAACATAACAA+AGG 0.682250 8_1:-66549181 Msa1208430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_1:66548871-66548890 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_1:66548872-66548891 Msa1208430:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_1:66550249-66550268 Msa1208430:five_prime_UTR 10.0%
!!! TTGTTTTCTAAATTTTTAAA+AGG + chr8_1:66548871-66548890 None:intergenic 10.0%
!! TTAAAAATTTAGAAAACAAT+AGG - chr8_1:66548872-66548891 Msa1208430:three_prime_UTR 10.0%
!! ATAAAATAAAATTAATGTGT+AGG - chr8_1:66550249-66550268 Msa1208430:five_prime_UTR 10.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_1:66548868-66548887 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_1:66549592-66549611 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_1:66549636-66549655 Msa1208430:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_1:66550011-66550030 Msa1208430:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_1:66550333-66550352 Msa1208430:five_prime_UTR 15.0%
!!! TTTTCTAAATTTTTAAAAGG+AGG + chr8_1:66548868-66548887 None:intergenic 15.0%
!! TTAAAATATGCAAAGTATAA+AGG + chr8_1:66549592-66549611 None:intergenic 15.0%
!! TGATTATTATTGGATTATTA+TGG - chr8_1:66549636-66549655 Msa1208430:CDS 15.0%
!! CTAAATAATTCAATGAAATT+TGG - chr8_1:66550011-66550030 Msa1208430:CDS 15.0%
!! AAATAACAATAACATAACAA+AGG - chr8_1:66550333-66550352 Msa1208430:five_prime_UTR 15.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_1:66549025-66549044 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_1:66549074-66549093 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_1:66549135-66549154 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_1:66549580-66549599 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_1:66549626-66549645 Msa1208430:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_1:66549988-66550007 Msa1208430:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_1:66550015-66550034 Msa1208430:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_1:66550127-66550146 Msa1208430:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_1:66550254-66550273 Msa1208430:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_1:66550557-66550576 Msa1208430:five_prime_UTR 20.0%
!! TAGTATATGAAAAAGAGAAA+AGG + chr8_1:66549025-66549044 None:intergenic 20.0%
!! TGAAAGTGAAAAAAACATAA+GGG + chr8_1:66549074-66549093 None:intergenic 20.0%
!! ATTGGTATAATTTAGAAGTT+TGG + chr8_1:66549135-66549154 None:intergenic 20.0%
!! AAGTATAAAGGAAATTCTAA+AGG + chr8_1:66549580-66549599 None:intergenic 20.0%
!!! TGATTGATGATGATTATTAT+TGG - chr8_1:66549626-66549645 Msa1208430:CDS 20.0%
!! TTTCAACATTGTAAAAATAG+TGG - chr8_1:66549988-66550007 Msa1208430:CDS 20.0%
!! ATAATTCAATGAAATTTGGT+AGG - chr8_1:66550015-66550034 Msa1208430:CDS 20.0%
!! ATTACATTGGATGAAATTTA+TGG - chr8_1:66550127-66550146 Msa1208430:CDS 20.0%
!! ATAAAATTAATGTGTAGGTT+AGG - chr8_1:66550254-66550273 Msa1208430:five_prime_UTR 20.0%
!!! TCCTATTTGACTTATTATAT+GGG - chr8_1:66550557-66550576 Msa1208430:five_prime_UTR 20.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_1:66548846-66548865 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_1:66549075-66549094 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_1:66549129-66549148 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_1:66549145-66549164 Msa1208430:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_1:66549182-66549201 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_1:66549187-66549206 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_1:66549645-66549664 Msa1208430:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_1:66549848-66549867 Msa1208430:intron 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_1:66550455-66550474 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_1:66550556-66550575 Msa1208430:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_1:66550561-66550580 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_1:66550603-66550622 Msa1208430:five_prime_UTR 25.0%
! GTAGAAGAAATTAATGTGAA+GGG + chr8_1:66548846-66548865 None:intergenic 25.0%
! GTGAAAGTGAAAAAAACATA+AGG + chr8_1:66549075-66549094 None:intergenic 25.0%
!! ATAATTTAGAAGTTTGGAGT+TGG + chr8_1:66549129-66549148 None:intergenic 25.0%
!! TTATACCAATCTTACTCTTT+TGG - chr8_1:66549145-66549164 Msa1208430:CDS 25.0%
! AATAGAAGAATGAAAAGGAA+TGG + chr8_1:66549182-66549201 None:intergenic 25.0%
! AGTGAAATAGAAGAATGAAA+AGG + chr8_1:66549187-66549206 None:intergenic 25.0%
!! TTGGATTATTATGGTTTTTG+TGG - chr8_1:66549645-66549664 Msa1208430:CDS 25.0%
! GAAATTAAGAATTGCAAAGA+AGG - chr8_1:66549848-66549867 Msa1208430:intron 25.0%
! TTAATCAAAAGTTTCCCATT+TGG + chr8_1:66550455-66550474 None:intergenic 25.0%
!! GTCCTATTTGACTTATTATA+TGG - chr8_1:66550556-66550575 Msa1208430:five_prime_UTR 25.0%
! TCCCATATAATAAGTCAAAT+AGG + chr8_1:66550561-66550580 None:intergenic 25.0%
! TTCAGCTCTATTTAATTCAA+TGG - chr8_1:66550603-66550622 Msa1208430:five_prime_UTR 25.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_1:66548847-66548866 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_1:66548911-66548930 Msa1208430:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_1:66548963-66548982 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_1:66548964-66548983 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_1:66549017-66549036 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_1:66549153-66549172 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_1:66549219-66549238 Msa1208430:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_1:66549273-66549292 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_1:66549302-66549321 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_1:66549303-66549322 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_1:66549355-66549374 Msa1208430:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_1:66549396-66549415 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_1:66549497-66549516 Msa1208430:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_1:66549528-66549547 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_1:66549529-66549548 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_1:66549535-66549554 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_1:66549651-66549670 Msa1208430:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_1:66549652-66549671 Msa1208430:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_1:66549684-66549703 Msa1208430:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_1:66549854-66549873 Msa1208430:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_1:66549889-66549908 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_1:66549887-66549906 Msa1208430:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_1:66549925-66549944 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_1:66550114-66550133 Msa1208430:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_1:66550188-66550207 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_1:66550186-66550205 Msa1208430:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_1:66550342-66550361 Msa1208430:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_1:66550438-66550457 Msa1208430:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_1:66550473-66550492 Msa1208430:five_prime_UTR 30.0%
GGTAGAAGAAATTAATGTGA+AGG + chr8_1:66548847-66548866 None:intergenic 30.0%
AGAGACTTTCTATCAAATCA+AGG - chr8_1:66548911-66548930 Msa1208430:three_prime_UTR 30.0%
AGAACGTAAAGAGCAAAAAT+GGG + chr8_1:66548963-66548982 None:intergenic 30.0%
AAGAACGTAAAGAGCAAAAA+TGG + chr8_1:66548964-66548983 None:intergenic 30.0%
GAAAAAGAGAAAAGGAGAAA+AGG + chr8_1:66549017-66549036 None:intergenic 30.0%
AAAGACCAAAAGAGTAAGAT+TGG + chr8_1:66549153-66549172 None:intergenic 30.0%
! ATAAGCTTTTGAACAAGTCA+AGG - chr8_1:66549219-66549238 Msa1208430:CDS 30.0%
AGAAATTGCTTTCCTTTGAA+TGG + chr8_1:66549273-66549292 None:intergenic 30.0%
TTTGCTTGATAGAGCTAAAA+GGG + chr8_1:66549302-66549321 None:intergenic 30.0%
! TTTTGCTTGATAGAGCTAAA+AGG + chr8_1:66549303-66549322 None:intergenic 30.0%
! AACGATCAACATGTTTTCAA+GGG - chr8_1:66549355-66549374 Msa1208430:intron 30.0%
ATTTGGATTGACATGAACAT+TGG + chr8_1:66549396-66549415 None:intergenic 30.0%
ATCAAAGTCAAAGTGAAGTA+TGG - chr8_1:66549497-66549516 Msa1208430:intron 30.0%
! ACTGATATGAATTTGGTGAT+GGG + chr8_1:66549528-66549547 None:intergenic 30.0%
! AACTGATATGAATTTGGTGA+TGG + chr8_1:66549529-66549548 None:intergenic 30.0%
CATGAGAACTGATATGAATT+TGG + chr8_1:66549535-66549554 None:intergenic 30.0%
! TATTATGGTTTTTGTGGTGT+AGG - chr8_1:66549651-66549670 Msa1208430:CDS 30.0%
! ATTATGGTTTTTGTGGTGTA+GGG - chr8_1:66549652-66549671 Msa1208430:CDS 30.0%
AAAATGTTGACAGAATCAAC+AGG - chr8_1:66549684-66549703 Msa1208430:CDS 30.0%
AAGAATTGCAAAGAAGGAAA+AGG - chr8_1:66549854-66549873 Msa1208430:intron 30.0%
!! CTCTAAGGTTACTTCAATTA+AGG + chr8_1:66549889-66549908 None:intergenic 30.0%
CTTAATTGAAGTAACCTTAG+AGG - chr8_1:66549887-66549906 Msa1208430:intron 30.0%
! CACATTATTGTGTACCTTTT+TGG + chr8_1:66549925-66549944 None:intergenic 30.0%
!! GATGAGAGTATTGATTACAT+TGG - chr8_1:66550114-66550133 Msa1208430:CDS 30.0%
CAGTTATGAAAACAAAGAGT+TGG + chr8_1:66550188-66550207 None:intergenic 30.0%
!!! CAACTCTTTGTTTTCATAAC+TGG - chr8_1:66550186-66550205 Msa1208430:CDS 30.0%
TAACATAACAAAGGAGAGTA+AGG - chr8_1:66550342-66550361 Msa1208430:five_prime_UTR 30.0%
AGTTGTAGTAACAACCAAAT+GGG - chr8_1:66550438-66550457 Msa1208430:five_prime_UTR 30.0%
AAGATTGCATTTAGTTGCTT+TGG - chr8_1:66550473-66550492 Msa1208430:five_prime_UTR 30.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_1:66549012-66549031 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_1:66549126-66549145 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_1:66549270-66549289 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_1:66549319-66549338 Msa1208430:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_1:66549354-66549373 Msa1208430:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_1:66549405-66549424 Msa1208430:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_1:66549406-66549425 Msa1208430:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_1:66549413-66549432 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_1:66549495-66549514 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_1:66549542-66549561 Msa1208430:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_1:66549653-66549672 Msa1208430:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_1:66549771-66549790 Msa1208430:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_1:66549824-66549843 Msa1208430:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_1:66550027-66550046 Msa1208430:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_1:66550046-66550065 Msa1208430:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_1:66550066-66550085 Msa1208430:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_1:66550159-66550178 Msa1208430:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_1:66550421-66550440 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_1:66550437-66550456 Msa1208430:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_1:66550682-66550701 None:intergenic 35.0%
AGAGAAAAGGAGAAAAGGAA+TGG + chr8_1:66549012-66549031 None:intergenic 35.0%
! ATTTAGAAGTTTGGAGTTGG+TGG + chr8_1:66549126-66549145 None:intergenic 35.0%
AATTGCTTTCCTTTGAATGG+AGG + chr8_1:66549270-66549289 None:intergenic 35.0%
AAAACTTGCAATGCAGTCAA+AGG - chr8_1:66549319-66549338 Msa1208430:intron 35.0%
! CAACGATCAACATGTTTTCA+AGG - chr8_1:66549354-66549373 Msa1208430:intron 35.0%
TCAATCCAAATGTAGCTGAA+TGG - chr8_1:66549405-66549424 Msa1208430:CDS 35.0%
CAATCCAAATGTAGCTGAAT+GGG - chr8_1:66549406-66549425 Msa1208430:CDS 35.0%
AATTCCCATTCAGCTACATT+TGG + chr8_1:66549413-66549432 None:intergenic 35.0%
! CTTCACTTTGACTTTGATGA+TGG + chr8_1:66549495-66549514 None:intergenic 35.0%
! ATCAGTTCTCATGCAAGTTT+TGG - chr8_1:66549542-66549561 Msa1208430:intron 35.0%
! TTATGGTTTTTGTGGTGTAG+GGG - chr8_1:66549653-66549672 Msa1208430:CDS 35.0%
GATATTGAGAGAGTCAAAGA+TGG - chr8_1:66549771-66549790 Msa1208430:CDS 35.0%
GAGTAGAGAAAGAAGGATAT+TGG - chr8_1:66549824-66549843 Msa1208430:CDS 35.0%
AATTTGGTAGGTTTCAGCTT+TGG - chr8_1:66550027-66550046 Msa1208430:CDS 35.0%
! TTGGAGGGTAATGTTTCTAA+AGG - chr8_1:66550046-66550065 Msa1208430:CDS 35.0%
! AGGTGAAGTTATTTCAGAGT+TGG - chr8_1:66550066-66550085 Msa1208430:CDS 35.0%
GAAATTGCAGAGAAAAGAAC+AGG - chr8_1:66550159-66550178 Msa1208430:CDS 35.0%
! ACTGACTCAGAATGTTTCAA+AGG + chr8_1:66550421-66550440 None:intergenic 35.0%
CAGTTGTAGTAACAACCAAA+TGG - chr8_1:66550437-66550456 Msa1208430:five_prime_UTR 35.0%
CCACTCACACATATATAACA+CGG + chr8_1:66550682-66550701 None:intergenic 35.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_1:66549241-66549260 Msa1208430:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_1:66549260-66549279 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_1:66549330-66549349 Msa1208430:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_1:66549440-66549459 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_1:66549817-66549836 Msa1208430:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_1:66549908-66549927 Msa1208430:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_1:66550679-66550698 Msa1208430:five_prime_UTR 40.0%
AGGGAAACACCTCATAATTG+TGG + chr8_1:66548827-66548846 None:intergenic 40.0%
GTTGTTCTTTCTTCTTCCCT+AGG - chr8_1:66549241-66549260 Msa1208430:CDS 40.0%
CTTTGAATGGAGGAAACCTA+GGG + chr8_1:66549260-66549279 None:intergenic 40.0%
TGCAGTCAAAGGTTACAAAG+AGG - chr8_1:66549330-66549349 Msa1208430:intron 40.0%
! TTTTGTACTAGCATTCCACC+TGG + chr8_1:66549440-66549459 None:intergenic 40.0%
ACATCGAGAGTAGAGAAAGA+AGG - chr8_1:66549817-66549836 Msa1208430:CDS 40.0%
GGTTGACAAACTTGCCAAAA+AGG - chr8_1:66549908-66549927 Msa1208430:intron 40.0%
CCGTGTTATATATGTGTGAG+TGG - chr8_1:66550679-66550698 Msa1208430:five_prime_UTR 40.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_1:66548951-66548970 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_1:66548952-66548971 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_1:66549083-66549102 Msa1208430:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_1:66549097-66549116 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_1:66549118-66549137 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_1:66549261-66549280 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_1:66549258-66549277 Msa1208430:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_1:66549419-66549438 Msa1208430:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_1:66549422-66549441 Msa1208430:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_1:66549904-66549923 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_1:66550030-66550049 Msa1208430:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_1:66550031-66550050 Msa1208430:CDS 45.0%
GCAAAAATGGGAGTGAGTGA+GGG + chr8_1:66548951-66548970 None:intergenic 45.0%
AGCAAAAATGGGAGTGAGTG+AGG + chr8_1:66548952-66548971 None:intergenic 45.0%
TTTCACTTTCACCGACAGCT+AGG - chr8_1:66549083-66549102 Msa1208430:CDS 45.0%
GGTGAAAACAACCTAGCTGT+CGG + chr8_1:66549097-66549116 None:intergenic 45.0%
!!! GTTTGGAGTTGGTGGTGTTT+TGG + chr8_1:66549118-66549137 None:intergenic 45.0%
CCTTTGAATGGAGGAAACCT+AGG + chr8_1:66549261-66549280 None:intergenic 45.0%
CCTAGGTTTCCTCCATTCAA+AGG - chr8_1:66549258-66549277 Msa1208430:intron 45.0%
GCTGAATGGGAATTAAGACC+AGG - chr8_1:66549419-66549438 Msa1208430:CDS 45.0%
GAATGGGAATTAAGACCAGG+TGG - chr8_1:66549422-66549441 Msa1208430:CDS 45.0%
GGCAAGTTTGTCAACCTCTA+AGG + chr8_1:66549904-66549923 None:intergenic 45.0%
! TTGGTAGGTTTCAGCTTTGG+AGG - chr8_1:66550030-66550049 Msa1208430:CDS 45.0%
!! TGGTAGGTTTCAGCTTTGGA+GGG - chr8_1:66550031-66550050 Msa1208430:CDS 45.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_1:66548948-66548967 None:intergenic 50.0%
AAAATGGGAGTGAGTGAGGG+AGG + chr8_1:66548948-66548967 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66548825 66550711 66548825 ID=Msa1208430;Name=Msa1208430
chr8_1 mRNA 66548825 66550711 66548825 ID=Msa1208430-mRNA-1;Parent=Msa1208430;Name=Msa1208430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=504|1|1|1|1|1|4|237|279
chr8_1 exon 66548825 66549265 66548825 ID=Msa1208430-mRNA-1:exon:21926;Parent=Msa1208430-mRNA-1
chr8_1 exon 66549356 66549499 66549356 ID=Msa1208430-mRNA-1:exon:21925;Parent=Msa1208430-mRNA-1
chr8_1 exon 66549607 66549863 66549607 ID=Msa1208430-mRNA-1:exon:21924;Parent=Msa1208430-mRNA-1
chr8_1 exon 66549973 66550711 66549973 ID=Msa1208430-mRNA-1:exon:21923;Parent=Msa1208430-mRNA-1
chr8_1 five_prime_UTR 66550208 66550711 66550208 ID=Msa1208430-mRNA-1:five_prime_utr;Parent=Msa1208430-mRNA-1
chr8_1 CDS 66549973 66550207 66549973 ID=Msa1208430-mRNA-1:cds;Parent=Msa1208430-mRNA-1
chr8_1 CDS 66549607 66549863 66549607 ID=Msa1208430-mRNA-1:cds;Parent=Msa1208430-mRNA-1
chr8_1 CDS 66549356 66549499 66549356 ID=Msa1208430-mRNA-1:cds;Parent=Msa1208430-mRNA-1
chr8_1 CDS 66549062 66549265 66549062 ID=Msa1208430-mRNA-1:cds;Parent=Msa1208430-mRNA-1
chr8_1 three_prime_UTR 66548825 66549061 66548825 ID=Msa1208430-mRNA-1:three_prime_utr;Parent=Msa1208430-mRNA-1
Gene Sequence

>Msa1208430

ATGCAGTCAAAGGTTACAAAGAGGTCAACGATCAACATGTTTTCAAGGGACAAAAAAAGTGACACCAATGTTCATGTCAATCCAAATGTAGCTGAATGGGAATTAAGACCAGGTGGAATGCTAGTACAAAAACGTAATTCAGATGTGAATGATAATTTTTCATCCATCATCAAAGTCAAAGTGAAGTATGGCTCATCCCATCACCAAATTCATATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTGACAGAATCAACAGGATTGCATGTTCAAGATCAGAAGTTGATTTTCAAGAAAAAAGAGAGAGACTCAAAGTCATATCTTGATATTGAGAGAGTCAAAGATGGATCAAAGTTGATTTTAATTGAAGACATCGAGAGTAGAGAAAGAAGGATATTGGAGAAATTAAGAATTGCAAAGAAGGAAAAGGCTTCAAAATCCTTAATTGAAGTAACCTTAGAGGTTGACAAACTTGCCAAAAAGGTTTCAGCTTTGGAGGGTAATGTTTCTAAAGGTGAAGTTATTTCAGAGTTGGATGTAGAGAGTTTAACAGAAAATTTGATGAGAGTATTGATTACATTGGATGAAATTTATGGTGAAGAACTGAAATTGCAGAGAAAAGAACAGGTTAGGAGAGTTCAGAAGCACATTGAGACTCTTGATATGTTAAAGATGTCAAAGTCAATTGAAAATAACAATAACATAACAAAGGAGAGTAAGGTTGATTGTGATGTTCAAAAGCAGCATTTGCAAGAGAAGCAACAAGAACAACAACCTTTGAAACATTCTGAGTCAGTTGTAGTAACAACCAAATGGGAAACTTTTGATTAA

Protein sequence

>Msa1208430

MQSKVTKRSTINMFSRDKKSDTNVHVNPNVAEWELRPGGMLVQKRNSDVNDNFSSIIKVKVKYGSSHHQIHISSHASFGELKKMLTESTGLHVQDQKLIFKKKERDSKSYLDIERVKDGSKLILIEDIESRERRILEKLRIAKKEKASKSLIEVTLEVDKLAKKVSALEGNVSKGEVISELDVESLTENLMRVLITLDEIYGEELKLQRKEQVRRVQKHIETLDMLKMSKSIENNNNITKESKVDCDVQKQHLQEKQQEQQPLKHSESVVVTTKWETFD*