Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724500 | XP_003613544.1 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 7.72e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724500 | sp|Q38879|TRXH2_ARATH | 47.748 | 111 | 58 | 0 | 15 | 125 | 22 | 132 | 1.06e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724500 | D8L5E0 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 3.69e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083200 | Msa0724500 | 0.810660 | 1.032170e-50 | -8.615850e-47 |
| Msa0724490 | Msa0724500 | 0.933594 | 1.478639e-95 | -8.615850e-47 |
| Msa0724500 | Msa0765020 | 0.882768 | 7.897284e-71 | -8.615850e-47 |
| Msa0724500 | Msa0765040 | 0.853224 | 2.752006e-61 | -8.615850e-47 |
| Msa0724500 | Msa0794040 | 0.813501 | 2.479799e-51 | -8.615850e-47 |
| Msa0724500 | Msa0844330 | 0.902216 | 1.215652e-78 | -8.615850e-47 |
| Msa0724500 | Msa0844350 | 0.857027 | 2.159098e-62 | -8.615850e-47 |
| Msa0724500 | Msa1070810 | -0.838986 | 2.075168e-57 | -8.615850e-47 |
| Msa0724500 | Msa1132320 | 0.803409 | 3.534285e-49 | -8.615850e-47 |
| Msa0724500 | Msa1158630 | -0.839566 | 1.467572e-57 | -8.615850e-47 |
| Msa0724500 | Msa1188380 | 0.807178 | 5.738305e-50 | -8.615850e-47 |
| Msa0724500 | Msa1224690 | 0.812580 | 3.946775e-51 | -8.615850e-47 |
| Msa0724500 | Msa1294520 | 0.805931 | 1.051615e-49 | -8.615850e-47 |
| Msa0724500 | Msa1351560 | 0.801139 | 1.036880e-48 | -8.615850e-47 |
| Msa0724500 | Msa1407200 | 0.812874 | 3.403151e-51 | -8.615850e-47 |
| Msa0724500 | Msa1409050 | 0.829853 | 4.080488e-55 | -8.615850e-47 |
| Msa0724500 | Msa1409760 | 0.818803 | 1.619559e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724500 | MtrunA17_Chr5g0415741 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 7.10e-90 | 256 |
| Msa0724500 | MtrunA17_Chr5g0415761 | 66.406 | 128 | 41 | 1 | 1 | 126 | 1 | 128 | 5.40e-51 | 157 |
| Msa0724500 | MtrunA17_Chr5g0415771 | 65.873 | 126 | 42 | 1 | 1 | 125 | 1 | 126 | 2.06e-50 | 156 |
| Msa0724500 | MtrunA17_Chr7g0216481 | 54.717 | 106 | 48 | 0 | 20 | 125 | 28 | 133 | 4.11e-42 | 135 |
| Msa0724500 | MtrunA17_Chr3g0142051 | 45.946 | 111 | 60 | 0 | 14 | 124 | 2 | 112 | 3.48e-35 | 117 |
| Msa0724500 | MtrunA17_Chr5g0404831 | 43.750 | 112 | 63 | 0 | 13 | 124 | 3 | 114 | 3.20e-34 | 115 |
| Msa0724500 | MtrunA17_Chr1g0155721 | 41.593 | 113 | 66 | 0 | 14 | 126 | 2 | 114 | 1.88e-33 | 113 |
| Msa0724500 | MtrunA17_Chr8g0393201 | 41.748 | 103 | 60 | 0 | 19 | 121 | 228 | 330 | 7.46e-24 | 93.6 |
| Msa0724500 | MtrunA17_Chr8g0334481 | 33.333 | 105 | 70 | 0 | 17 | 121 | 25 | 129 | 1.37e-22 | 86.3 |
| Msa0724500 | MtrunA17_Chr7g0245141 | 35.238 | 105 | 68 | 0 | 17 | 121 | 23 | 127 | 2.60e-22 | 85.5 |
| Msa0724500 | MtrunA17_Chr2g0280411 | 38.095 | 105 | 65 | 0 | 18 | 122 | 9 | 113 | 2.86e-22 | 85.1 |
| Msa0724500 | MtrunA17_Chr4g0042051 | 36.449 | 107 | 64 | 2 | 18 | 122 | 10 | 114 | 3.79e-20 | 79.7 |
| Msa0724500 | MtrunA17_Chr2g0319291 | 31.429 | 105 | 72 | 0 | 18 | 122 | 10 | 114 | 5.06e-19 | 76.6 |
| Msa0724500 | MtrunA17_Chr4g0052481 | 29.661 | 118 | 69 | 2 | 8 | 123 | 61 | 166 | 8.77e-15 | 67.0 |
| Msa0724500 | MtrunA17_Chr7g0249461 | 36.364 | 88 | 55 | 1 | 40 | 126 | 98 | 185 | 3.44e-14 | 65.5 |
| Msa0724500 | MtrunA17_Chr3g0125821 | 31.313 | 99 | 63 | 3 | 27 | 123 | 76 | 171 | 3.78e-14 | 65.5 |
| Msa0724500 | MtrunA17_Chr8g0360031 | 34.091 | 88 | 56 | 2 | 38 | 123 | 87 | 174 | 4.90e-14 | 65.1 |
| Msa0724500 | MtrunA17_Chr1g0201781 | 31.395 | 86 | 56 | 2 | 39 | 123 | 77 | 160 | 5.12e-14 | 64.7 |
| Msa0724500 | MtrunA17_Chr2g0317731 | 34.091 | 88 | 56 | 2 | 38 | 123 | 84 | 171 | 2.47e-13 | 63.2 |
| Msa0724500 | MtrunA17_Chr1g0211871 | 32.911 | 79 | 49 | 2 | 38 | 115 | 84 | 159 | 8.70e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724500 | AT5G39950.1 | 47.748 | 111 | 58 | 0 | 15 | 125 | 22 | 132 | 1.08e-40 | 132 |
| Msa0724500 | AT1G69880.1 | 47.664 | 107 | 56 | 0 | 17 | 123 | 36 | 142 | 7.02e-35 | 118 |
| Msa0724500 | AT1G59730.1 | 41.406 | 128 | 72 | 1 | 1 | 125 | 1 | 128 | 2.56e-34 | 116 |
| Msa0724500 | AT3G51030.1 | 41.818 | 110 | 64 | 0 | 14 | 123 | 2 | 111 | 2.38e-32 | 110 |
| Msa0724500 | AT1G19730.1 | 45.536 | 112 | 60 | 1 | 14 | 124 | 2 | 113 | 1.49e-31 | 108 |
| Msa0724500 | AT1G45145.1 | 42.991 | 107 | 61 | 0 | 18 | 124 | 5 | 111 | 1.40e-30 | 106 |
| Msa0724500 | AT5G42980.1 | 42.727 | 110 | 63 | 0 | 17 | 126 | 4 | 113 | 4.70e-30 | 105 |
| Msa0724500 | AT3G56420.1 | 35.714 | 112 | 67 | 1 | 13 | 119 | 30 | 141 | 2.13e-22 | 86.7 |
| Msa0724500 | AT3G56420.2 | 35.714 | 112 | 67 | 1 | 13 | 119 | 30 | 141 | 2.13e-22 | 86.7 |
| Msa0724500 | AT3G56420.3 | 35.714 | 112 | 67 | 1 | 13 | 119 | 30 | 141 | 2.13e-22 | 86.7 |
| Msa0724500 | AT3G17880.2 | 39.806 | 103 | 62 | 0 | 19 | 121 | 264 | 366 | 1.02e-21 | 89.0 |
| Msa0724500 | AT3G17880.1 | 39.806 | 103 | 62 | 0 | 19 | 121 | 271 | 373 | 1.18e-21 | 88.6 |
| Msa0724500 | AT3G08710.2 | 33.010 | 103 | 67 | 1 | 19 | 121 | 26 | 126 | 1.84e-19 | 78.6 |
| Msa0724500 | AT3G08710.3 | 33.010 | 103 | 67 | 1 | 19 | 121 | 26 | 126 | 1.84e-19 | 78.6 |
| Msa0724500 | AT3G08710.1 | 33.010 | 103 | 67 | 1 | 19 | 121 | 26 | 126 | 1.84e-19 | 78.6 |
| Msa0724500 | AT1G11530.1 | 33.333 | 105 | 70 | 0 | 18 | 122 | 2 | 106 | 3.30e-18 | 74.7 |
| Msa0724500 | AT2G40790.2 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 1.18e-17 | 74.3 |
| Msa0724500 | AT2G40790.1 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 1.18e-17 | 74.3 |
| Msa0724500 | AT1G43560.1 | 28.205 | 117 | 79 | 3 | 1 | 112 | 33 | 149 | 1.28e-15 | 69.3 |
| Msa0724500 | AT5G16400.1 | 37.500 | 88 | 54 | 1 | 40 | 126 | 97 | 184 | 2.36e-15 | 68.9 |
| Msa0724500 | AT3G02730.1 | 39.080 | 87 | 52 | 1 | 41 | 126 | 88 | 174 | 4.88e-15 | 68.2 |
| Msa0724500 | AT4G03520.1 | 42.254 | 71 | 40 | 1 | 43 | 112 | 101 | 171 | 4.92e-15 | 68.2 |
| Msa0724500 | AT1G03680.1 | 39.506 | 81 | 47 | 2 | 45 | 123 | 97 | 177 | 1.46e-14 | 66.6 |
| Msa0724500 | AT1G31020.1 | 31.148 | 122 | 80 | 2 | 4 | 123 | 37 | 156 | 1.65e-14 | 66.2 |
| Msa0724500 | AT2G35010.2 | 37.349 | 83 | 48 | 2 | 44 | 123 | 110 | 191 | 2.79e-13 | 63.5 |
| Msa0724500 | AT2G35010.1 | 37.349 | 83 | 48 | 2 | 44 | 123 | 110 | 191 | 2.79e-13 | 63.5 |
| Msa0724500 | AT1G76760.1 | 28.421 | 95 | 61 | 3 | 33 | 120 | 70 | 164 | 7.22e-13 | 62.4 |
| Msa0724500 | AT1G52990.1 | 32.967 | 91 | 59 | 2 | 34 | 123 | 222 | 311 | 6.51e-12 | 61.2 |
| Msa0724500 | AT1G50320.1 | 35.443 | 79 | 47 | 2 | 38 | 115 | 85 | 160 | 1.74e-11 | 58.9 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAATAAAATAATATAAT+TGG | 0.230145 | 5_1:-23079449 | None:intergenic |
| CATTCCATTCCACTGCTAAA+TGG | 0.238150 | 5_1:-23080260 | Msa0724500:CDS |
| GCTTGATGTCGATGAGTTAA+TGG | 0.243334 | 5_1:-23080008 | Msa0724500:intron |
| GCAGCAAAATCTTTCATAAC+TGG | 0.263663 | 5_1:+23080058 | None:intergenic |
| TTATTGATTTCACAGCTAAA+TGG | 0.322109 | 5_1:-23080105 | Msa0724500:CDS |
| CACATTCTCCTTTGATTACA+AGG | 0.348500 | 5_1:-23079629 | Msa0724500:three_prime_UTR |
| TGCATTCTGATCTTGTAGAT+TGG | 0.356317 | 5_1:+23079604 | None:intergenic |
| TGTTAATTTGTTGGGATGAT+TGG | 0.356739 | 5_1:+23080426 | None:intergenic |
| TTGTTGGGATGATTGGAAAT+TGG | 0.378161 | 5_1:+23080433 | None:intergenic |
| TATGATGTTTGTTAATTTGT+TGG | 0.396039 | 5_1:+23080417 | None:intergenic |
| TAAAGTGGTGGGAGCAAGAA+AGG | 0.432390 | 5_1:-23079731 | Msa0724500:CDS |
| TTCTTAATGAGTAAAATAGT+TGG | 0.439170 | 5_1:+23079769 | None:intergenic |
| ATGATGTTTGTTAATTTGTT+GGG | 0.458297 | 5_1:+23080418 | None:intergenic |
| ATAGTGTAGAAAGGAATAGT+AGG | 0.463861 | 5_1:+23080467 | None:intergenic |
| GGGATGATTGGAAATTGGTT+GGG | 0.476532 | 5_1:+23080438 | None:intergenic |
| GGGAGTTTCTCAAACATTCC+AGG | 0.482800 | 5_1:-23079803 | Msa0724500:CDS |
| TGGGATGATTGGAAATTGGT+TGG | 0.482987 | 5_1:+23080437 | None:intergenic |
| GTGTGGACCTTGCAAAGTTA+TGG | 0.487071 | 5_1:-23080083 | Msa0724500:CDS |
| AGGAAAGGTTGTTGATAAAG+TGG | 0.493130 | 5_1:-23079746 | Msa0724500:CDS |
| TAGCAGTGGAATGGAATGTA+AGG | 0.498154 | 5_1:+23080265 | None:intergenic |
| CTGCAAAATACACTGATGTT+GGG | 0.498670 | 5_1:-23080039 | Msa0724500:CDS |
| GCTGCAAAATACACTGATGT+TGG | 0.511854 | 5_1:-23080040 | Msa0724500:CDS |
| ATACACAAAATTATACAAGT+TGG | 0.527315 | 5_1:+23080317 | None:intergenic |
| AAGATCAGAATGCAAGAAGT+TGG | 0.527815 | 5_1:-23079595 | Msa0724500:three_prime_UTR |
| CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_1:+23080256 | None:intergenic |
| TTTACTCATTAAGAAAGGAA+AGG | 0.531595 | 5_1:-23079761 | Msa0724500:CDS |
| GGGATATATATAGTGTAGAA+AGG | 0.532837 | 5_1:+23080458 | None:intergenic |
| GATTGGTCCCTTGTAATCAA+AGG | 0.566753 | 5_1:+23079621 | None:intergenic |
| TGGAATGGAATGTAAGGACA+TGG | 0.568326 | 5_1:+23080271 | None:intergenic |
| ACATTCTCCTTTGATTACAA+GGG | 0.588996 | 5_1:-23079628 | Msa0724500:three_prime_UTR |
| GATTTCACAGCTAAATGGTG+TGG | 0.590907 | 5_1:-23080100 | Msa0724500:CDS |
| TAGTTGGCAATGAATGCACC+TGG | 0.594643 | 5_1:+23079785 | None:intergenic |
| AAGGTTGTTGATAAAGTGGT+GGG | 0.601867 | 5_1:-23079742 | Msa0724500:CDS |
| ACTGGATCCATAACTTTGCA+AGG | 0.602265 | 5_1:+23080076 | None:intergenic |
| ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5_1:+23080251 | None:intergenic |
| AAAGGTTGTTGATAAAGTGG+TGG | 0.610487 | 5_1:-23079743 | Msa0724500:CDS |
| CAAGAAAGGAGGAACTACAA+AGG | 0.696570 | 5_1:-23079717 | Msa0724500:CDS |
| AGTGGTGGGAGCAAGAAAGG+AGG | 0.703427 | 5_1:-23079728 | Msa0724500:CDS |
| GGAATGGAATGTAAGGACAT+GGG | 0.736550 | 5_1:+23080272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_1:23079703-23079722 | Msa0724500:CDS | 15.0% |
| !! | AAATAATATCATTTATAACG+AGG | + | chr5_1:23080037-23080056 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTATAATACAAA+TGG | - | chr5_1:23080092-23080111 | Msa0724500:CDS | 15.0% |
| !! | ACTCAAAAAATAGAAAATAT+AGG | - | chr5_1:23080364-23080383 | Msa0724500:five_prime_UTR | 15.0% |
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_1:23079703-23079722 | Msa0724500:CDS | 15.0% |
| !! | AAATAATATCATTTATAACG+AGG | + | chr5_1:23080037-23080056 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTATAATACAAA+TGG | - | chr5_1:23080092-23080111 | Msa0724500:CDS | 15.0% |
| !! | ACTCAAAAAATAGAAAATAT+AGG | - | chr5_1:23080364-23080383 | Msa0724500:five_prime_UTR | 15.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_1:23079508-23079527 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_1:23079509-23079528 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_1:23079609-23079628 | None:intergenic | 20.0% |
| !!! | TATAATTTTGTGTATGTTGA+TGG | - | chr5_1:23079614-23079633 | Msa0724500:three_prime_UTR | 20.0% |
| !! | AATTAAACCTTACATAAAGT+TGG | + | chr5_1:23079991-23080010 | None:intergenic | 20.0% |
| !! | TTCTTAATGAGTAAAATAGT+TGG | + | chr5_1:23080157-23080176 | None:intergenic | 20.0% |
| !!! | ACTATTTTACTCATTAAGAA+AGG | - | chr5_1:23080157-23080176 | Msa0724500:intron | 20.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_1:23079508-23079527 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_1:23079509-23079528 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_1:23079609-23079628 | None:intergenic | 20.0% |
| !!! | TATAATTTTGTGTATGTTGA+TGG | - | chr5_1:23079614-23079633 | Msa0724500:three_prime_UTR | 20.0% |
| !! | AATTAAACCTTACATAAAGT+TGG | + | chr5_1:23079991-23080010 | None:intergenic | 20.0% |
| !! | TTCTTAATGAGTAAAATAGT+TGG | + | chr5_1:23080157-23080176 | None:intergenic | 20.0% |
| !!! | ACTATTTTACTCATTAAGAA+AGG | - | chr5_1:23080157-23080176 | Msa0724500:intron | 20.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_1:23079555-23079574 | Msa0724500:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_1:23079564-23079583 | None:intergenic | 25.0% |
| !! | GTGTTTTTCTTTTGTATAGA+TGG | - | chr5_1:23079795-23079814 | Msa0724500:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_1:23079818-23079837 | Msa0724500:intron | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_1:23079956-23079975 | None:intergenic | 25.0% |
| ! | TGTAAAACCAACTTTATGTA+AGG | - | chr5_1:23079981-23080000 | Msa0724500:intron | 25.0% |
| ! | TTAGTACTTGAGAACTAATT+TGG | - | chr5_1:23080072-23080091 | Msa0724500:CDS | 25.0% |
| ! | TTTATAATACAAATGGCAAC+AGG | - | chr5_1:23080099-23080118 | Msa0724500:CDS | 25.0% |
| ! | TTATAATACAAATGGCAACA+GGG | - | chr5_1:23080100-23080119 | Msa0724500:CDS | 25.0% |
| ! | TTTACTCATTAAGAAAGGAA+AGG | - | chr5_1:23080162-23080181 | Msa0724500:intron | 25.0% |
| !! | TCATTCTTTTATCATTGAAG+AGG | - | chr5_1:23080389-23080408 | Msa0724500:five_prime_UTR | 25.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_1:23079555-23079574 | Msa0724500:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_1:23079564-23079583 | None:intergenic | 25.0% |
| !! | GTGTTTTTCTTTTGTATAGA+TGG | - | chr5_1:23079795-23079814 | Msa0724500:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_1:23079818-23079837 | Msa0724500:intron | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_1:23079956-23079975 | None:intergenic | 25.0% |
| ! | TGTAAAACCAACTTTATGTA+AGG | - | chr5_1:23079981-23080000 | Msa0724500:intron | 25.0% |
| ! | TTAGTACTTGAGAACTAATT+TGG | - | chr5_1:23080072-23080091 | Msa0724500:CDS | 25.0% |
| ! | TTTATAATACAAATGGCAAC+AGG | - | chr5_1:23080099-23080118 | Msa0724500:CDS | 25.0% |
| ! | TTATAATACAAATGGCAACA+GGG | - | chr5_1:23080100-23080119 | Msa0724500:CDS | 25.0% |
| ! | TTTACTCATTAAGAAAGGAA+AGG | - | chr5_1:23080162-23080181 | Msa0724500:intron | 25.0% |
| !! | TCATTCTTTTATCATTGAAG+AGG | - | chr5_1:23080389-23080408 | Msa0724500:five_prime_UTR | 25.0% |
| ATAGTGTAGAAAGGAATAGT+AGG | + | chr5_1:23079459-23079478 | None:intergenic | 30.0% | |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_1:23079468-23079487 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_1:23079500-23079519 | None:intergenic | 30.0% |
| ACATTCTCCTTTGATTACAA+GGG | - | chr5_1:23080295-23080314 | Msa0724500:CDS | 30.0% | |
| ATAGTGTAGAAAGGAATAGT+AGG | + | chr5_1:23079459-23079478 | None:intergenic | 30.0% | |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_1:23079468-23079487 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_1:23079500-23079519 | None:intergenic | 30.0% |
| ACATTCTCCTTTGATTACAA+GGG | - | chr5_1:23080295-23080314 | Msa0724500:CDS | 30.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_1:23079493-23079512 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_1:23079868-23079887 | None:intergenic | 35.0% | |
| CTGCAAAATACACTGATGTT+GGG | - | chr5_1:23079884-23079903 | Msa0724500:intron | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_1:23080177-23080196 | Msa0724500:intron | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_1:23080180-23080199 | Msa0724500:intron | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_1:23080181-23080200 | Msa0724500:intron | 35.0% |
| CACATTCTCCTTTGATTACA+AGG | - | chr5_1:23080294-23080313 | Msa0724500:CDS | 35.0% | |
| TGCATTCTGATCTTGTAGAT+TGG | + | chr5_1:23080322-23080341 | None:intergenic | 35.0% | |
| AAGATCAGAATGCAAGAAGT+TGG | - | chr5_1:23080328-23080347 | Msa0724500:exon | 35.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_1:23079493-23079512 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_1:23079868-23079887 | None:intergenic | 35.0% | |
| CTGCAAAATACACTGATGTT+GGG | - | chr5_1:23079884-23079903 | Msa0724500:intron | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_1:23080177-23080196 | Msa0724500:intron | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_1:23080180-23080199 | Msa0724500:intron | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_1:23080181-23080200 | Msa0724500:intron | 35.0% |
| CACATTCTCCTTTGATTACA+AGG | - | chr5_1:23080294-23080313 | Msa0724500:CDS | 35.0% | |
| TGCATTCTGATCTTGTAGAT+TGG | + | chr5_1:23080322-23080341 | None:intergenic | 35.0% | |
| AAGATCAGAATGCAAGAAGT+TGG | - | chr5_1:23080328-23080347 | Msa0724500:exon | 35.0% | |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_1:23079488-23079507 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_1:23079489-23079508 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_1:23079654-23079673 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_1:23079655-23079674 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_1:23079661-23079680 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_1:23079663-23079682 | Msa0724500:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_1:23079670-23079689 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_1:23079675-23079694 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_1:23079823-23079842 | Msa0724500:intron | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_1:23079850-23079869 | None:intergenic | 40.0% | |
| GCTGCAAAATACACTGATGT+TGG | - | chr5_1:23079883-23079902 | Msa0724500:intron | 40.0% | |
| GCTTGATGTCGATGAGTTAA+TGG | - | chr5_1:23079915-23079934 | Msa0724500:intron | 40.0% | |
| CAAGAAAGGAGGAACTACAA+AGG | - | chr5_1:23080206-23080225 | Msa0724500:intron | 40.0% | |
| ! | GATTGGTCCCTTGTAATCAA+AGG | + | chr5_1:23080305-23080324 | None:intergenic | 40.0% |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_1:23079488-23079507 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_1:23079489-23079508 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_1:23079654-23079673 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_1:23079655-23079674 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_1:23079661-23079680 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_1:23079663-23079682 | Msa0724500:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_1:23079670-23079689 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_1:23079675-23079694 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_1:23079823-23079842 | Msa0724500:intron | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_1:23079850-23079869 | None:intergenic | 40.0% | |
| GCTGCAAAATACACTGATGT+TGG | - | chr5_1:23079883-23079902 | Msa0724500:intron | 40.0% | |
| GCTTGATGTCGATGAGTTAA+TGG | - | chr5_1:23079915-23079934 | Msa0724500:intron | 40.0% | |
| CAAGAAAGGAGGAACTACAA+AGG | - | chr5_1:23080206-23080225 | Msa0724500:intron | 40.0% | |
| ! | GATTGGTCCCTTGTAATCAA+AGG | + | chr5_1:23080305-23080324 | None:intergenic | 40.0% |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_1:23079840-23079859 | Msa0724500:intron | 45.0% | |
| GGGAGTTTCTCAAACATTCC+AGG | - | chr5_1:23080120-23080139 | Msa0724500:intron | 45.0% | |
| TAGTTGGCAATGAATGCACC+TGG | + | chr5_1:23080141-23080160 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_1:23080192-23080211 | Msa0724500:intron | 45.0% |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_1:23079840-23079859 | Msa0724500:intron | 45.0% | |
| GGGAGTTTCTCAAACATTCC+AGG | - | chr5_1:23080120-23080139 | Msa0724500:intron | 45.0% | |
| TAGTTGGCAATGAATGCACC+TGG | + | chr5_1:23080141-23080160 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_1:23080192-23080211 | Msa0724500:intron | 45.0% |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_1:23080195-23080214 | Msa0724500:intron | 55.0% |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_1:23080195-23080214 | Msa0724500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23079450 | 23080495 | 23079450 | ID=Msa0724500;Name=Msa0724500 |
| chr5_1 | mRNA | 23079450 | 23080495 | 23079450 | ID=Msa0724500-mRNA-1;Parent=Msa0724500;Name=Msa0724500-mRNA-1;_AED=0.28;_eAED=0.28;_QI=149|1|1|1|1|1|3|243|126 |
| chr5_1 | exon | 23079450 | 23079824 | 23079450 | ID=Msa0724500-mRNA-1:exon:8648;Parent=Msa0724500-mRNA-1 |
| chr5_1 | exon | 23080009 | 23080131 | 23080009 | ID=Msa0724500-mRNA-1:exon:8647;Parent=Msa0724500-mRNA-1 |
| chr5_1 | exon | 23080221 | 23080495 | 23080221 | ID=Msa0724500-mRNA-1:exon:8646;Parent=Msa0724500-mRNA-1 |
| chr5_1 | five_prime_UTR | 23080347 | 23080495 | 23080347 | ID=Msa0724500-mRNA-1:five_prime_utr;Parent=Msa0724500-mRNA-1 |
| chr5_1 | CDS | 23080221 | 23080346 | 23080221 | ID=Msa0724500-mRNA-1:cds;Parent=Msa0724500-mRNA-1 |
| chr5_1 | CDS | 23080009 | 23080131 | 23080009 | ID=Msa0724500-mRNA-1:cds;Parent=Msa0724500-mRNA-1 |
| chr5_1 | CDS | 23079693 | 23079824 | 23079693 | ID=Msa0724500-mRNA-1:cds;Parent=Msa0724500-mRNA-1 |
| chr5_1 | three_prime_UTR | 23079450 | 23079692 | 23079450 | ID=Msa0724500-mRNA-1:three_prime_utr;Parent=Msa0724500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
