Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0844350 | XP_003613544.1 | 94.444 | 126 | 7 | 0 | 1 | 126 | 1 | 126 | 5.44e-76 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0844350 | sp|Q38879|TRXH2_ARATH | 45.045 | 111 | 61 | 0 | 15 | 125 | 22 | 132 | 4.45e-38 | 128 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0844350 | D8L5E0 | 94.444 | 126 | 7 | 0 | 1 | 126 | 1 | 126 | 2.60e-76 | 231 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026120 | Msa0844350 | 0.829269 | 5.658353e-55 | -8.615850e-47 |
Msa0030030 | Msa0844350 | 0.812347 | 4.438906e-51 | -8.615850e-47 |
Msa0039200 | Msa0844350 | 0.842715 | 2.182734e-58 | -8.615850e-47 |
Msa0046670 | Msa0844350 | 0.819051 | 1.422881e-52 | -8.615850e-47 |
Msa0053480 | Msa0844350 | 0.803008 | 4.279575e-49 | -8.615850e-47 |
Msa0055650 | Msa0844350 | 0.805634 | 1.214285e-49 | -8.615850e-47 |
Msa0077330 | Msa0844350 | 0.840258 | 9.691810e-58 | -8.615850e-47 |
Msa0083200 | Msa0844350 | 0.802654 | 5.064483e-49 | -8.615850e-47 |
Msa0086820 | Msa0844350 | 0.841060 | 5.974540e-58 | -8.615850e-47 |
Msa0096230 | Msa0844350 | 0.802841 | 4.632060e-49 | -8.615850e-47 |
Msa0110520 | Msa0844350 | 0.841768 | 3.890288e-58 | -8.615850e-47 |
Msa0112800 | Msa0844350 | 0.821722 | 3.471588e-53 | -8.615850e-47 |
Msa0623360 | Msa0844350 | 0.829283 | 5.613170e-55 | -8.615850e-47 |
Msa0626890 | Msa0844350 | 0.816791 | 4.608893e-52 | -8.615850e-47 |
Msa0639030 | Msa0844350 | 0.801008 | 1.102808e-48 | -8.615850e-47 |
Msa0646390 | Msa0844350 | 0.810066 | 1.386263e-50 | -8.615850e-47 |
Msa0653710 | Msa0844350 | 0.803042 | 4.211024e-49 | -8.615850e-47 |
Msa0664130 | Msa0844350 | 0.804811 | 1.805667e-49 | -8.615850e-47 |
Msa0685880 | Msa0844350 | 0.820784 | 5.713234e-53 | -8.615850e-47 |
Msa0698900 | Msa0844350 | 0.804364 | 2.238580e-49 | -8.615850e-47 |
Msa0713530 | Msa0844350 | 0.827829 | 1.260111e-54 | -8.615850e-47 |
Msa0724490 | Msa0844350 | 0.933634 | 1.391237e-95 | -8.615850e-47 |
Msa0724500 | Msa0844350 | 0.857027 | 2.159098e-62 | -8.615850e-47 |
Msa0736930 | Msa0844350 | 0.826443 | 2.705349e-54 | -8.615850e-47 |
Msa0738600 | Msa0844350 | 0.815323 | 9.805251e-52 | -8.615850e-47 |
Msa0751000 | Msa0844350 | 0.841883 | 3.625955e-58 | -8.615850e-47 |
Msa0755590 | Msa0844350 | 0.832438 | 9.455155e-56 | -8.615850e-47 |
Msa0756410 | Msa0844350 | 0.832708 | 8.102366e-56 | -8.615850e-47 |
Msa0765010 | Msa0844350 | 0.900176 | 9.521042e-78 | -8.615850e-47 |
Msa0765020 | Msa0844350 | 0.959932 | 5.453637e-118 | -8.615850e-47 |
Msa0765040 | Msa0844350 | 0.918091 | 2.389441e-86 | -8.615850e-47 |
Msa0782030 | Msa0844350 | 0.801853 | 7.402034e-49 | -8.615850e-47 |
Msa0794040 | Msa0844350 | 0.842150 | 3.082081e-58 | -8.615850e-47 |
Msa0797240 | Msa0844350 | 0.817681 | 2.906374e-52 | -8.615850e-47 |
Msa0815950 | Msa0844350 | 0.817528 | 3.147517e-52 | -8.615850e-47 |
Msa0818950 | Msa0844350 | 0.821662 | 3.584027e-53 | -8.615850e-47 |
Msa0826560 | Msa0844350 | 0.803372 | 3.596946e-49 | -8.615850e-47 |
Msa0834160 | Msa0844350 | 0.801214 | 1.000773e-48 | -8.615850e-47 |
Msa0835010 | Msa0844350 | 0.825483 | 4.574099e-54 | -8.615850e-47 |
Msa0839730 | Msa0844350 | 0.803331 | 3.667752e-49 | -8.615850e-47 |
Msa0133670 | Msa0844350 | 0.840412 | 8.833105e-58 | -8.615850e-47 |
Msa0133880 | Msa0844350 | 0.845925 | 2.994979e-59 | -8.615850e-47 |
Msa0166580 | Msa0844350 | 0.833236 | 5.989489e-56 | -8.615850e-47 |
Msa0169960 | Msa0844350 | 0.815871 | 7.404955e-52 | -8.615850e-47 |
Msa0175480 | Msa0844350 | 0.851137 | 1.079444e-60 | -8.615850e-47 |
Msa0181290 | Msa0844350 | 0.829665 | 4.534511e-55 | -8.615850e-47 |
Msa0184030 | Msa0844350 | 0.810402 | 1.173700e-50 | -8.615850e-47 |
Msa0184120 | Msa0844350 | 0.840639 | 7.704854e-58 | -8.615850e-47 |
Msa0207530 | Msa0844350 | 0.816705 | 4.817435e-52 | -8.615850e-47 |
Msa0207900 | Msa0844350 | 0.823845 | 1.112389e-53 | -8.615850e-47 |
Msa0213090 | Msa0844350 | 0.821528 | 3.849290e-53 | -8.615850e-47 |
Msa0216560 | Msa0844350 | 0.841662 | 4.147851e-58 | -8.615850e-47 |
Msa0218480 | Msa0844350 | 0.805417 | 1.348297e-49 | -8.615850e-47 |
Msa0218590 | Msa0844350 | 0.810032 | 1.409836e-50 | -8.615850e-47 |
Msa0221940 | Msa0844350 | 0.813855 | 2.071779e-51 | -8.615850e-47 |
Msa0222720 | Msa0844350 | 0.841897 | 3.594885e-58 | -8.615850e-47 |
Msa0369750 | Msa0844350 | 0.838299 | 3.122685e-57 | -8.615850e-47 |
Msa0379720 | Msa0844350 | 0.810789 | 9.678626e-51 | -8.615850e-47 |
Msa0389830 | Msa0844350 | 0.806450 | 8.178165e-50 | -8.615850e-47 |
Msa0419050 | Msa0844350 | 0.815142 | 1.075499e-51 | -8.615850e-47 |
Msa0421100 | Msa0844350 | 0.809693 | 1.667700e-50 | -8.615850e-47 |
Msa0427050 | Msa0844350 | 0.821695 | 3.521976e-53 | -8.615850e-47 |
Msa0429130 | Msa0844350 | 0.815799 | 7.683880e-52 | -8.615850e-47 |
Msa0431940 | Msa0844350 | 0.807620 | 4.624016e-50 | -8.615850e-47 |
Msa0448400 | Msa0844350 | 0.821838 | 3.262495e-53 | -8.615850e-47 |
Msa0463960 | Msa0844350 | 0.830968 | 2.177394e-55 | -8.615850e-47 |
Msa0473450 | Msa0844350 | 0.816959 | 4.226463e-52 | -8.615850e-47 |
Msa0253370 | Msa0844350 | 0.808034 | 3.775864e-50 | -8.615850e-47 |
Msa0256170 | Msa0844350 | 0.852366 | 4.840353e-61 | -8.615850e-47 |
Msa0256430 | Msa0844350 | 0.840082 | 1.077136e-57 | -8.615850e-47 |
Msa0264020 | Msa0844350 | 0.836554 | 8.741561e-57 | -8.615850e-47 |
Msa0266380 | Msa0844350 | 0.812551 | 4.004980e-51 | -8.615850e-47 |
Msa0270610 | Msa0844350 | 0.829822 | 4.150914e-55 | -8.615850e-47 |
Msa0273230 | Msa0844350 | 0.801409 | 9.126518e-49 | -8.615850e-47 |
Msa0288320 | Msa0844350 | 0.814744 | 1.317844e-51 | -8.615850e-47 |
Msa0295840 | Msa0844350 | 0.854240 | 1.404435e-61 | -8.615850e-47 |
Msa0301300 | Msa0844350 | 0.812479 | 4.153985e-51 | -8.615850e-47 |
Msa0330270 | Msa0844350 | 0.814356 | 1.606492e-51 | -8.615850e-47 |
Msa0330400 | Msa0844350 | 0.821861 | 3.224375e-53 | -8.615850e-47 |
Msa0334180 | Msa0844350 | 0.843883 | 1.065366e-58 | -8.615850e-47 |
Msa0486870 | Msa0844350 | 0.802606 | 5.180306e-49 | -8.615850e-47 |
Msa0509500 | Msa0844350 | 0.804291 | 2.318011e-49 | -8.615850e-47 |
Msa0509510 | Msa0844350 | 0.826298 | 2.929402e-54 | -8.615850e-47 |
Msa0510560 | Msa0844350 | 0.808434 | 3.102661e-50 | -8.615850e-47 |
Msa0520810 | Msa0844350 | 0.803420 | 3.516464e-49 | -8.615850e-47 |
Msa0521100 | Msa0844350 | 0.819099 | 1.387631e-52 | -8.615850e-47 |
Msa0844330 | Msa0844350 | 0.927588 | 9.527105e-92 | -8.615850e-47 |
Msa0844350 | Msa0861480 | 0.809865 | 1.531997e-50 | -8.615850e-47 |
Msa0844350 | Msa0861560 | 0.828515 | 8.611828e-55 | -8.615850e-47 |
Msa0844350 | Msa0883410 | 0.800013 | 1.758791e-48 | -8.615850e-47 |
Msa0844350 | Msa0883430 | 0.813063 | 3.093378e-51 | -8.615850e-47 |
Msa0844350 | Msa0883670 | 0.805946 | 1.044400e-49 | -8.615850e-47 |
Msa0844350 | Msa0883690 | 0.817128 | 3.872921e-52 | -8.615850e-47 |
Msa0844350 | Msa0883700 | 0.802126 | 6.504245e-49 | -8.615850e-47 |
Msa0844350 | Msa0897390 | 0.820828 | 5.580174e-53 | -8.615850e-47 |
Msa0844350 | Msa0967450 | 0.808886 | 2.484198e-50 | -8.615850e-47 |
Msa0844350 | Msa0978000 | 0.802577 | 5.252205e-49 | -8.615850e-47 |
Msa0844350 | Msa0984820 | 0.812597 | 3.913593e-51 | -8.615850e-47 |
Msa0844350 | Msa0984830 | 0.820141 | 8.023969e-53 | -8.615850e-47 |
Msa0844350 | Msa0984840 | 0.834986 | 2.182637e-56 | -8.615850e-47 |
Msa0844350 | Msa0984850 | 0.838362 | 3.007828e-57 | -8.615850e-47 |
Msa0844350 | Msa0984860 | 0.822810 | 1.940397e-53 | -8.615850e-47 |
Msa0844350 | Msa0985040 | 0.820199 | 7.780182e-53 | -8.615850e-47 |
Msa0844350 | Msa1016110 | 0.804822 | 1.795843e-49 | -8.615850e-47 |
Msa0844350 | Msa1016130 | 0.805387 | 1.368134e-49 | -8.615850e-47 |
Msa0844350 | Msa1031220 | 0.824694 | 7.025075e-54 | -8.615850e-47 |
Msa0844350 | Msa1041550 | 0.865470 | 5.770021e-65 | -8.615850e-47 |
Msa0844350 | Msa1044330 | 0.815097 | 1.100473e-51 | -8.615850e-47 |
Msa0844350 | Msa1071310 | 0.827647 | 1.393811e-54 | -8.615850e-47 |
Msa0844350 | Msa1081530 | 0.850911 | 1.249858e-60 | -8.615850e-47 |
Msa0844350 | Msa1102180 | 0.809772 | 1.603720e-50 | -8.615850e-47 |
Msa0844350 | Msa1132320 | 0.834607 | 2.718793e-56 | -8.615850e-47 |
Msa0844350 | Msa1161520 | 0.818948 | 1.501799e-52 | -8.615850e-47 |
Msa0844350 | Msa1166450 | 0.874586 | 6.014192e-68 | -8.615850e-47 |
Msa0844350 | Msa1167820 | 0.800472 | 1.418168e-48 | -8.615850e-47 |
Msa0844350 | Msa1173410 | 0.815886 | 7.345509e-52 | -8.615850e-47 |
Msa0844350 | Msa1175590 | 0.812103 | 5.017229e-51 | -8.615850e-47 |
Msa0844350 | Msa1182400 | 0.805725 | 1.162172e-49 | -8.615850e-47 |
Msa0844350 | Msa1188380 | 0.870362 | 1.545213e-66 | -8.615850e-47 |
Msa0844350 | Msa1188820 | 0.807637 | 4.587022e-50 | -8.615850e-47 |
Msa0844350 | Msa1208250 | 0.817314 | 3.516588e-52 | -8.615850e-47 |
Msa0844350 | Msa1216700 | 0.809465 | 1.866851e-50 | -8.615850e-47 |
Msa0844350 | Msa1216900 | 0.801367 | 9.311486e-49 | -8.615850e-47 |
Msa0844350 | Msa1224690 | 0.855035 | 8.263981e-62 | -8.615850e-47 |
Msa0844350 | Msa1230190 | 0.812408 | 4.304130e-51 | -8.615850e-47 |
Msa0844350 | Msa1231520 | 0.829991 | 3.775325e-55 | -8.615850e-47 |
Msa0844350 | Msa1235760 | 0.824578 | 7.482203e-54 | -8.615850e-47 |
Msa0844350 | Msa1235770 | 0.843786 | 1.131257e-58 | -8.615850e-47 |
Msa0844350 | Msa1238370 | 0.816480 | 5.411544e-52 | -8.615850e-47 |
Msa0844350 | Msa1242430 | 0.875905 | 2.131135e-68 | -8.615850e-47 |
Msa0844350 | Msa1242990 | 0.846708 | 1.832606e-59 | -8.615850e-47 |
Msa0844350 | Msa1248400 | 0.809872 | 1.526678e-50 | -8.615850e-47 |
Msa0844350 | Msa1254470 | 0.832423 | 9.534468e-56 | -8.615850e-47 |
Msa0844350 | Msa1263610 | 0.821883 | 3.186289e-53 | -8.615850e-47 |
Msa0844350 | Msa1264230 | 0.804131 | 2.502337e-49 | -8.615850e-47 |
Msa0844350 | Msa1265250 | 0.800457 | 1.428752e-48 | -8.615850e-47 |
Msa0844350 | Msa1266720 | 0.849370 | 3.377570e-60 | -8.615850e-47 |
Msa0844350 | Msa1274310 | 0.804860 | 1.763403e-49 | -8.615850e-47 |
Msa0844350 | Msa1284390 | 0.819757 | 9.823560e-53 | -8.615850e-47 |
Msa0844350 | Msa1289340 | 0.803198 | 3.908880e-49 | -8.615850e-47 |
Msa0844350 | Msa1294520 | 0.829019 | 6.504430e-55 | -8.615850e-47 |
Msa0844350 | Msa1302920 | 0.817335 | 3.477632e-52 | -8.615850e-47 |
Msa0844350 | Msa1306700 | 0.814712 | 1.340055e-51 | -8.615850e-47 |
Msa0844350 | Msa1309910 | 0.813452 | 2.541378e-51 | -8.615850e-47 |
Msa0844350 | Msa1319440 | 0.836033 | 1.186174e-56 | -8.615850e-47 |
Msa0844350 | Msa1323440 | 0.814830 | 1.261662e-51 | -8.615850e-47 |
Msa0844350 | Msa1323920 | 0.815034 | 1.136989e-51 | -8.615850e-47 |
Msa0844350 | Msa1331730 | 0.831512 | 1.600479e-55 | -8.615850e-47 |
Msa0844350 | Msa1333430 | 0.845740 | 3.363073e-59 | -8.615850e-47 |
Msa0844350 | Msa1340880 | 0.801604 | 8.325031e-49 | -8.615850e-47 |
Msa0844350 | Msa1346540 | 0.802275 | 6.059695e-49 | -8.615850e-47 |
Msa0844350 | Msa1351560 | 0.818933 | 1.513471e-52 | -8.615850e-47 |
Msa0844350 | Msa1357380 | 0.821208 | 4.561731e-53 | -8.615850e-47 |
Msa0844350 | Msa1357720 | 0.853295 | 2.626619e-61 | -8.615850e-47 |
Msa0844350 | Msa1366700 | 0.812126 | 4.958237e-51 | -8.615850e-47 |
Msa0844350 | Msa1368660 | 0.802006 | 6.885373e-49 | -8.615850e-47 |
Msa0844350 | Msa1384980 | 0.801745 | 7.789474e-49 | -8.615850e-47 |
Msa0844350 | Msa1385940 | 0.818146 | 2.282546e-52 | -8.615850e-47 |
Msa0844350 | Msa1397540 | 0.800101 | 1.687430e-48 | -8.615850e-47 |
Msa0844350 | Msa1400600 | 0.813494 | 2.487519e-51 | -8.615850e-47 |
Msa0844350 | Msa1405470 | 0.844892 | 5.703810e-59 | -8.615850e-47 |
Msa0844350 | Msa1407200 | 0.857907 | 1.185107e-62 | -8.615850e-47 |
Msa0844350 | Msa1409050 | 0.861074 | 1.324253e-63 | -8.615850e-47 |
Msa0844350 | Msa1409760 | 0.862331 | 5.467892e-64 | -8.615850e-47 |
Msa0844350 | Msa1414830 | 0.805031 | 1.624117e-49 | -8.615850e-47 |
Msa0844350 | Msa1415120 | 0.806893 | 6.593217e-50 | -8.615850e-47 |
Msa0844350 | Msa1432250 | 0.811061 | 8.452899e-51 | -8.615850e-47 |
Msa0844350 | Msa1433380 | 0.844073 | 9.473028e-59 | -8.615850e-47 |
Msa0844350 | Msa1459630 | 0.815998 | 6.934736e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0844350 | MtrunA17_Chr5g0415741 | 94.444 | 126 | 7 | 0 | 1 | 126 | 1 | 126 | 5.00e-80 | 231 |
Msa0844350 | MtrunA17_Chr5g0415771 | 62.698 | 126 | 46 | 1 | 1 | 125 | 1 | 126 | 1.88e-49 | 154 |
Msa0844350 | MtrunA17_Chr5g0415761 | 62.500 | 128 | 46 | 1 | 1 | 126 | 1 | 128 | 3.17e-49 | 153 |
Msa0844350 | MtrunA17_Chr7g0216481 | 51.887 | 106 | 51 | 0 | 20 | 125 | 28 | 133 | 2.17e-40 | 131 |
Msa0844350 | MtrunA17_Chr3g0142051 | 44.144 | 111 | 62 | 0 | 14 | 124 | 2 | 112 | 3.30e-34 | 115 |
Msa0844350 | MtrunA17_Chr5g0404831 | 42.342 | 111 | 64 | 0 | 14 | 124 | 4 | 114 | 5.35e-33 | 112 |
Msa0844350 | MtrunA17_Chr1g0155721 | 39.823 | 113 | 68 | 0 | 14 | 126 | 2 | 114 | 2.33e-32 | 110 |
Msa0844350 | MtrunA17_Chr8g0393201 | 39.423 | 104 | 63 | 0 | 18 | 121 | 227 | 330 | 5.95e-23 | 91.3 |
Msa0844350 | MtrunA17_Chr8g0334481 | 32.381 | 105 | 71 | 0 | 17 | 121 | 25 | 129 | 1.94e-21 | 83.2 |
Msa0844350 | MtrunA17_Chr7g0245141 | 33.333 | 105 | 70 | 0 | 17 | 121 | 23 | 127 | 4.14e-21 | 82.4 |
Msa0844350 | MtrunA17_Chr2g0280411 | 37.143 | 105 | 66 | 0 | 18 | 122 | 9 | 113 | 4.40e-21 | 82.0 |
Msa0844350 | MtrunA17_Chr4g0042051 | 35.514 | 107 | 65 | 2 | 18 | 122 | 10 | 114 | 1.17e-19 | 78.2 |
Msa0844350 | MtrunA17_Chr2g0319291 | 30.476 | 105 | 73 | 0 | 18 | 122 | 10 | 114 | 3.54e-18 | 74.3 |
Msa0844350 | MtrunA17_Chr8g0360031 | 34.091 | 88 | 56 | 2 | 38 | 123 | 87 | 174 | 2.15e-14 | 65.9 |
Msa0844350 | MtrunA17_Chr3g0125821 | 27.586 | 116 | 79 | 3 | 10 | 123 | 59 | 171 | 3.70e-14 | 65.5 |
Msa0844350 | MtrunA17_Chr2g0317731 | 34.091 | 88 | 56 | 2 | 38 | 123 | 84 | 171 | 1.44e-13 | 63.5 |
Msa0844350 | MtrunA17_Chr4g0052481 | 27.619 | 105 | 74 | 1 | 21 | 123 | 62 | 166 | 1.50e-13 | 63.5 |
Msa0844350 | MtrunA17_Chr1g0201781 | 29.070 | 86 | 58 | 2 | 39 | 123 | 77 | 160 | 5.29e-13 | 62.0 |
Msa0844350 | MtrunA17_Chr7g0249461 | 34.091 | 88 | 57 | 1 | 40 | 126 | 98 | 185 | 1.10e-12 | 61.6 |
Msa0844350 | MtrunA17_Chr1g0211871 | 32.911 | 79 | 49 | 2 | 38 | 115 | 84 | 159 | 3.66e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0844350 | AT5G39950.1 | 45.045 | 111 | 61 | 0 | 15 | 125 | 22 | 132 | 4.52e-39 | 128 |
Msa0844350 | AT1G69880.1 | 47.664 | 107 | 56 | 0 | 17 | 123 | 36 | 142 | 4.54e-35 | 118 |
Msa0844350 | AT1G59730.1 | 40.541 | 111 | 66 | 0 | 15 | 125 | 18 | 128 | 2.17e-32 | 111 |
Msa0844350 | AT3G51030.1 | 40.909 | 110 | 65 | 0 | 14 | 123 | 2 | 111 | 1.41e-31 | 108 |
Msa0844350 | AT1G45145.1 | 43.925 | 107 | 60 | 0 | 18 | 124 | 5 | 111 | 3.14e-31 | 107 |
Msa0844350 | AT1G19730.1 | 42.982 | 114 | 64 | 1 | 14 | 126 | 2 | 115 | 2.28e-30 | 105 |
Msa0844350 | AT5G42980.1 | 43.119 | 109 | 62 | 0 | 18 | 126 | 5 | 113 | 8.38e-30 | 104 |
Msa0844350 | AT3G56420.1 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 8.72e-21 | 82.4 |
Msa0844350 | AT3G56420.2 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 8.72e-21 | 82.4 |
Msa0844350 | AT3G56420.3 | 36.957 | 92 | 58 | 0 | 28 | 119 | 50 | 141 | 8.72e-21 | 82.4 |
Msa0844350 | AT3G17880.2 | 36.893 | 103 | 65 | 0 | 19 | 121 | 264 | 366 | 3.16e-20 | 84.7 |
Msa0844350 | AT3G17880.1 | 36.893 | 103 | 65 | 0 | 19 | 121 | 271 | 373 | 3.70e-20 | 84.7 |
Msa0844350 | AT3G08710.2 | 33.333 | 93 | 62 | 0 | 29 | 121 | 34 | 126 | 1.60e-18 | 76.3 |
Msa0844350 | AT3G08710.3 | 33.333 | 93 | 62 | 0 | 29 | 121 | 34 | 126 | 1.60e-18 | 76.3 |
Msa0844350 | AT3G08710.1 | 33.333 | 93 | 62 | 0 | 29 | 121 | 34 | 126 | 1.60e-18 | 76.3 |
Msa0844350 | AT1G11530.1 | 32.381 | 105 | 71 | 0 | 18 | 122 | 2 | 106 | 1.41e-17 | 73.2 |
Msa0844350 | AT2G40790.2 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 8.10e-17 | 72.0 |
Msa0844350 | AT2G40790.1 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 8.10e-17 | 72.0 |
Msa0844350 | AT4G03520.1 | 39.759 | 83 | 48 | 2 | 43 | 123 | 101 | 183 | 2.78e-15 | 68.9 |
Msa0844350 | AT1G03680.1 | 39.506 | 81 | 47 | 2 | 45 | 123 | 97 | 177 | 6.91e-15 | 67.8 |
Msa0844350 | AT3G15360.1 | 32.967 | 91 | 53 | 3 | 38 | 123 | 102 | 189 | 1.04e-14 | 67.4 |
Msa0844350 | AT1G43560.1 | 26.496 | 117 | 81 | 2 | 1 | 112 | 33 | 149 | 2.68e-14 | 65.9 |
Msa0844350 | AT5G16400.1 | 35.227 | 88 | 56 | 1 | 40 | 126 | 97 | 184 | 6.69e-14 | 65.1 |
Msa0844350 | AT1G31020.1 | 30.833 | 120 | 77 | 2 | 6 | 123 | 41 | 156 | 7.86e-14 | 64.3 |
Msa0844350 | AT3G02730.1 | 36.782 | 87 | 54 | 1 | 41 | 126 | 88 | 174 | 1.28e-13 | 64.3 |
Msa0844350 | AT2G35010.2 | 34.444 | 90 | 55 | 2 | 37 | 123 | 103 | 191 | 5.61e-13 | 62.8 |
Msa0844350 | AT2G35010.1 | 34.444 | 90 | 55 | 2 | 37 | 123 | 103 | 191 | 5.61e-13 | 62.8 |
Msa0844350 | AT1G52990.1 | 31.868 | 91 | 60 | 2 | 34 | 123 | 222 | 311 | 1.42e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACCAGTTTATTAGTTTCT+TGG | 0.217604 | 5_4:+22759748 | None:intergenic |
AATCAATAAAATAATATAAT+TGG | 0.230145 | 5_4:-22758970 | None:intergenic |
CATTCCATTCCACTGCTAAA+TGG | 0.236688 | 5_4:-22759791 | Msa0844350:CDS |
GCAGCAAAATCTTTCATAAC+TGG | 0.263663 | 5_4:+22759589 | None:intergenic |
GCTTGATGTTGATGAGTTAT+TGG | 0.264813 | 5_4:-22759539 | Msa0844350:intron |
TTATTGATTTCACAGCTAAA+TGG | 0.322109 | 5_4:-22759636 | Msa0844350:CDS |
TGTTAATTTGTTGGGATGAT+TGG | 0.356739 | 5_4:+22759957 | None:intergenic |
CTCATTCTCCTTTGATTACA+AGG | 0.364538 | 5_4:-22759148 | Msa0844350:three_prime_UTR |
TTGTTGGGATGATTGGAAAT+TGG | 0.378161 | 5_4:+22759964 | None:intergenic |
TTTCCAAGAAACTAATAAAC+TGG | 0.393712 | 5_4:-22759751 | Msa0844350:intron |
TATGATGTTTGTTAATTTGT+TGG | 0.396039 | 5_4:+22759948 | None:intergenic |
TTCTTAATGAGTAAAATAGT+TGG | 0.439170 | 5_4:+22759288 | None:intergenic |
ACTCAGAGAGTAGAAAATAT+AGG | 0.448618 | 5_4:-22759079 | Msa0844350:three_prime_UTR |
ATGATGTTTGTTAATTTGTT+GGG | 0.458297 | 5_4:+22759949 | None:intergenic |
ATAGTGTAGAAAGGAATAGT+AGG | 0.463861 | 5_4:+22759998 | None:intergenic |
TAAAGTGGTTGGAGTGAGAA+AGG | 0.465747 | 5_4:-22759250 | Msa0844350:CDS |
GGGATGATTGGAAATTGGTT+GGG | 0.476532 | 5_4:+22759969 | None:intergenic |
GGGAGTTTCTCAAACATTCC+AGG | 0.482800 | 5_4:-22759322 | Msa0844350:CDS |
TGGGATGATTGGAAATTGGT+TGG | 0.482987 | 5_4:+22759968 | None:intergenic |
GTGTGGACCTTGCAAAGTTA+TGG | 0.487071 | 5_4:-22759614 | Msa0844350:CDS |
AGGAAATGTTGTTGATAAAG+TGG | 0.502411 | 5_4:-22759265 | Msa0844350:CDS |
GACTGTTCCCTTGTAATCAA+AGG | 0.513534 | 5_4:+22759140 | None:intergenic |
AATGTTGTTGATAAAGTGGT+TGG | 0.520853 | 5_4:-22759261 | Msa0844350:CDS |
ATACACAAAATTATACAAGT+TGG | 0.527315 | 5_4:+22759848 | None:intergenic |
CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_4:+22759787 | None:intergenic |
GGGATATATATAGTGTAGAA+AGG | 0.532837 | 5_4:+22759989 | None:intergenic |
CAAGATCAAACGCAATAAGT+TGG | 0.537590 | 5_4:-22759115 | Msa0844350:three_prime_UTR |
TGGAATGGAATGCAAGGACA+TGG | 0.540723 | 5_4:+22759802 | None:intergenic |
TCATTCTCCTTTGATTACAA+GGG | 0.578056 | 5_4:-22759147 | Msa0844350:three_prime_UTR |
GATTTCACAGCTAAATGGTG+TGG | 0.590907 | 5_4:-22759631 | Msa0844350:CDS |
TAGTTGGCAATGAATGCACC+TGG | 0.594643 | 5_4:+22759304 | None:intergenic |
ACTGGATCCATAACTTTGCA+AGG | 0.602265 | 5_4:+22759607 | None:intergenic |
AGTGGTTGGAGTGAGAAAGG+AGG | 0.605043 | 5_4:-22759247 | Msa0844350:CDS |
ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5_4:+22759782 | None:intergenic |
TAGCAGTGGAATGGAATGCA+AGG | 0.615008 | 5_4:+22759796 | None:intergenic |
TGAGAAAGGAGGAACTACAA+AGG | 0.675876 | 5_4:-22759236 | Msa0844350:CDS |
GGAATGGAATGCAAGGACAT+GGG | 0.705076 | 5_4:+22759803 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATAGCATTTATAAT+AGG | + | chr5_4:22759571-22759590 | None:intergenic | 10.0% |
!! | AAAATAATAGCATTTATAAT+AGG | + | chr5_4:22759571-22759590 | None:intergenic | 10.0% |
!!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_4:22759029-22759048 | None:intergenic | 20.0% |
!!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_4:22759030-22759049 | None:intergenic | 20.0% |
!! | ATACACAAAATTATACAAGT+TGG | + | chr5_4:22759130-22759149 | None:intergenic | 20.0% |
!!! | TCTTATGTAGTATTTTTCTT+TGG | - | chr5_4:22759307-22759326 | Msa0844350:CDS | 20.0% |
!!! | TGTTTTTTCCACAATATAAA+TGG | - | chr5_4:22759625-22759644 | Msa0844350:CDS | 20.0% |
!! | TTCTTAATGAGTAAAATAGT+TGG | + | chr5_4:22759690-22759709 | None:intergenic | 20.0% |
!!! | ACTATTTTACTCATTAAGAA+AGG | - | chr5_4:22759690-22759709 | Msa0844350:intron | 20.0% |
!!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_4:22759029-22759048 | None:intergenic | 20.0% |
!!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_4:22759030-22759049 | None:intergenic | 20.0% |
!! | ATACACAAAATTATACAAGT+TGG | + | chr5_4:22759130-22759149 | None:intergenic | 20.0% |
!!! | TCTTATGTAGTATTTTTCTT+TGG | - | chr5_4:22759307-22759326 | Msa0844350:CDS | 20.0% |
!!! | TGTTTTTTCCACAATATAAA+TGG | - | chr5_4:22759625-22759644 | Msa0844350:CDS | 20.0% |
!! | TTCTTAATGAGTAAAATAGT+TGG | + | chr5_4:22759690-22759709 | None:intergenic | 20.0% |
!!! | ACTATTTTACTCATTAAGAA+AGG | - | chr5_4:22759690-22759709 | Msa0844350:intron | 20.0% |
!!! | CATACACCTAAATCATTTTT+TGG | - | chr5_4:22759076-22759095 | Msa0844350:three_prime_UTR | 25.0% |
! | GATGAACCAAAAAATGATTT+AGG | + | chr5_4:22759085-22759104 | None:intergenic | 25.0% |
! | TTTCCAAGAAACTAATAAAC+TGG | - | chr5_4:22759224-22759243 | Msa0844350:CDS | 25.0% |
!! | ATACCAGTTTATTAGTTTCT+TGG | + | chr5_4:22759230-22759249 | None:intergenic | 25.0% |
!! | GTATTTTTCTTTGGTATAGA+TGG | - | chr5_4:22759316-22759335 | Msa0844350:CDS | 25.0% |
!!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_4:22759339-22759358 | Msa0844350:intron | 25.0% |
! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_4:22759477-22759496 | None:intergenic | 25.0% |
!!! | GTCATTTTTTATCATTGAAG+AGG | - | chr5_4:22759920-22759939 | Msa0844350:five_prime_UTR | 25.0% |
!!! | CATACACCTAAATCATTTTT+TGG | - | chr5_4:22759076-22759095 | Msa0844350:three_prime_UTR | 25.0% |
! | GATGAACCAAAAAATGATTT+AGG | + | chr5_4:22759085-22759104 | None:intergenic | 25.0% |
! | TTTCCAAGAAACTAATAAAC+TGG | - | chr5_4:22759224-22759243 | Msa0844350:CDS | 25.0% |
!! | ATACCAGTTTATTAGTTTCT+TGG | + | chr5_4:22759230-22759249 | None:intergenic | 25.0% |
!! | GTATTTTTCTTTGGTATAGA+TGG | - | chr5_4:22759316-22759335 | Msa0844350:CDS | 25.0% |
!!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_4:22759339-22759358 | Msa0844350:intron | 25.0% |
! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_4:22759477-22759496 | None:intergenic | 25.0% |
!!! | GTCATTTTTTATCATTGAAG+AGG | - | chr5_4:22759920-22759939 | Msa0844350:five_prime_UTR | 25.0% |
ATAGTGTAGAAAGGAATAGT+AGG | + | chr5_4:22758980-22758999 | None:intergenic | 30.0% | |
GGGATATATATAGTGTAGAA+AGG | + | chr5_4:22758989-22759008 | None:intergenic | 30.0% | |
!! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_4:22759021-22759040 | None:intergenic | 30.0% |
AATTAAACCTGGCATAAAGT+TGG | + | chr5_4:22759511-22759530 | None:intergenic | 30.0% | |
! | AGGAAATGTTGTTGATAAAG+TGG | - | chr5_4:22759710-22759729 | Msa0844350:intron | 30.0% |
! | AATGTTGTTGATAAAGTGGT+TGG | - | chr5_4:22759714-22759733 | Msa0844350:intron | 30.0% |
TCATTCTCCTTTGATTACAA+GGG | - | chr5_4:22759828-22759847 | Msa0844350:CDS | 30.0% | |
ACTCAGAGAGTAGAAAATAT+AGG | - | chr5_4:22759896-22759915 | Msa0844350:five_prime_UTR | 30.0% | |
ATAGTGTAGAAAGGAATAGT+AGG | + | chr5_4:22758980-22758999 | None:intergenic | 30.0% | |
GGGATATATATAGTGTAGAA+AGG | + | chr5_4:22758989-22759008 | None:intergenic | 30.0% | |
!! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_4:22759021-22759040 | None:intergenic | 30.0% |
AATTAAACCTGGCATAAAGT+TGG | + | chr5_4:22759511-22759530 | None:intergenic | 30.0% | |
! | AGGAAATGTTGTTGATAAAG+TGG | - | chr5_4:22759710-22759729 | Msa0844350:intron | 30.0% |
! | AATGTTGTTGATAAAGTGGT+TGG | - | chr5_4:22759714-22759733 | Msa0844350:intron | 30.0% |
TCATTCTCCTTTGATTACAA+GGG | - | chr5_4:22759828-22759847 | Msa0844350:CDS | 30.0% | |
ACTCAGAGAGTAGAAAATAT+AGG | - | chr5_4:22759896-22759915 | Msa0844350:five_prime_UTR | 30.0% | |
TTGTTGGGATGATTGGAAAT+TGG | + | chr5_4:22759014-22759033 | None:intergenic | 35.0% | |
GCAGCAAAATCTTTCATAAC+TGG | + | chr5_4:22759389-22759408 | None:intergenic | 35.0% | |
! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_4:22759436-22759455 | Msa0844350:intron | 35.0% |
TGTAAAACCAACTTTATGCC+AGG | - | chr5_4:22759501-22759520 | Msa0844350:intron | 35.0% | |
ACCAACTGAGTAATTAAACC+TGG | + | chr5_4:22759522-22759541 | None:intergenic | 35.0% | |
TCCACAATATAAATGGCAAC+AGG | - | chr5_4:22759632-22759651 | Msa0844350:CDS | 35.0% | |
CCACAATATAAATGGCAACA+GGG | - | chr5_4:22759633-22759652 | Msa0844350:CDS | 35.0% | |
CTCATTCTCCTTTGATTACA+AGG | - | chr5_4:22759827-22759846 | Msa0844350:CDS | 35.0% | |
CAAGATCAAACGCAATAAGT+TGG | - | chr5_4:22759860-22759879 | Msa0844350:exon | 35.0% | |
TTGTTGGGATGATTGGAAAT+TGG | + | chr5_4:22759014-22759033 | None:intergenic | 35.0% | |
GCAGCAAAATCTTTCATAAC+TGG | + | chr5_4:22759389-22759408 | None:intergenic | 35.0% | |
! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_4:22759436-22759455 | Msa0844350:intron | 35.0% |
TGTAAAACCAACTTTATGCC+AGG | - | chr5_4:22759501-22759520 | Msa0844350:intron | 35.0% | |
ACCAACTGAGTAATTAAACC+TGG | + | chr5_4:22759522-22759541 | None:intergenic | 35.0% | |
TCCACAATATAAATGGCAAC+AGG | - | chr5_4:22759632-22759651 | Msa0844350:CDS | 35.0% | |
CCACAATATAAATGGCAACA+GGG | - | chr5_4:22759633-22759652 | Msa0844350:CDS | 35.0% | |
CTCATTCTCCTTTGATTACA+AGG | - | chr5_4:22759827-22759846 | Msa0844350:CDS | 35.0% | |
CAAGATCAAACGCAATAAGT+TGG | - | chr5_4:22759860-22759879 | Msa0844350:exon | 35.0% | |
GGGATGATTGGAAATTGGTT+GGG | + | chr5_4:22759009-22759028 | None:intergenic | 40.0% | |
TGGGATGATTGGAAATTGGT+TGG | + | chr5_4:22759010-22759029 | None:intergenic | 40.0% | |
CATTCCATTCCACTGCTAAA+TGG | - | chr5_4:22759184-22759203 | Msa0844350:three_prime_UTR | 40.0% | |
CATTCCATTTAGCAGTGGAA+TGG | + | chr5_4:22759191-22759210 | None:intergenic | 40.0% | |
ATGAGCATTCCATTTAGCAG+TGG | + | chr5_4:22759196-22759215 | None:intergenic | 40.0% | |
GATTTCACAGCTAAATGGTG+TGG | - | chr5_4:22759344-22759363 | Msa0844350:intron | 40.0% | |
ACTGGATCCATAACTTTGCA+AGG | + | chr5_4:22759371-22759390 | None:intergenic | 40.0% | |
GCCAGGTTTAATTACTCAGT+TGG | - | chr5_4:22759518-22759537 | Msa0844350:intron | 40.0% | |
! | CCCTGTTGCCATTTATATTG+TGG | + | chr5_4:22759636-22759655 | None:intergenic | 40.0% |
TAAAGTGGTTGGAGTGAGAA+AGG | - | chr5_4:22759725-22759744 | Msa0844350:intron | 40.0% | |
TGAGAAAGGAGGAACTACAA+AGG | - | chr5_4:22759739-22759758 | Msa0844350:intron | 40.0% | |
GACTGTTCCCTTGTAATCAA+AGG | + | chr5_4:22759838-22759857 | None:intergenic | 40.0% | |
GGGATGATTGGAAATTGGTT+GGG | + | chr5_4:22759009-22759028 | None:intergenic | 40.0% | |
TGGGATGATTGGAAATTGGT+TGG | + | chr5_4:22759010-22759029 | None:intergenic | 40.0% | |
CATTCCATTCCACTGCTAAA+TGG | - | chr5_4:22759184-22759203 | Msa0844350:three_prime_UTR | 40.0% | |
CATTCCATTTAGCAGTGGAA+TGG | + | chr5_4:22759191-22759210 | None:intergenic | 40.0% | |
ATGAGCATTCCATTTAGCAG+TGG | + | chr5_4:22759196-22759215 | None:intergenic | 40.0% | |
GATTTCACAGCTAAATGGTG+TGG | - | chr5_4:22759344-22759363 | Msa0844350:intron | 40.0% | |
ACTGGATCCATAACTTTGCA+AGG | + | chr5_4:22759371-22759390 | None:intergenic | 40.0% | |
GCCAGGTTTAATTACTCAGT+TGG | - | chr5_4:22759518-22759537 | Msa0844350:intron | 40.0% | |
! | CCCTGTTGCCATTTATATTG+TGG | + | chr5_4:22759636-22759655 | None:intergenic | 40.0% |
TAAAGTGGTTGGAGTGAGAA+AGG | - | chr5_4:22759725-22759744 | Msa0844350:intron | 40.0% | |
TGAGAAAGGAGGAACTACAA+AGG | - | chr5_4:22759739-22759758 | Msa0844350:intron | 40.0% | |
GACTGTTCCCTTGTAATCAA+AGG | + | chr5_4:22759838-22759857 | None:intergenic | 40.0% | |
GGAATGGAATGCAAGGACAT+GGG | + | chr5_4:22759175-22759194 | None:intergenic | 45.0% | |
TGGAATGGAATGCAAGGACA+TGG | + | chr5_4:22759176-22759195 | None:intergenic | 45.0% | |
TAGCAGTGGAATGGAATGCA+AGG | + | chr5_4:22759182-22759201 | None:intergenic | 45.0% | |
GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_4:22759361-22759380 | Msa0844350:intron | 45.0% | |
GGGAGTTTCTCAAACATTCC+AGG | - | chr5_4:22759653-22759672 | Msa0844350:intron | 45.0% | |
TAGTTGGCAATGAATGCACC+TGG | + | chr5_4:22759674-22759693 | None:intergenic | 45.0% | |
GGAATGGAATGCAAGGACAT+GGG | + | chr5_4:22759175-22759194 | None:intergenic | 45.0% | |
TGGAATGGAATGCAAGGACA+TGG | + | chr5_4:22759176-22759195 | None:intergenic | 45.0% | |
TAGCAGTGGAATGGAATGCA+AGG | + | chr5_4:22759182-22759201 | None:intergenic | 45.0% | |
GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_4:22759361-22759380 | Msa0844350:intron | 45.0% | |
GGGAGTTTCTCAAACATTCC+AGG | - | chr5_4:22759653-22759672 | Msa0844350:intron | 45.0% | |
TAGTTGGCAATGAATGCACC+TGG | + | chr5_4:22759674-22759693 | None:intergenic | 45.0% | |
AGTGGTTGGAGTGAGAAAGG+AGG | - | chr5_4:22759728-22759747 | Msa0844350:intron | 50.0% | |
AGTGGTTGGAGTGAGAAAGG+AGG | - | chr5_4:22759728-22759747 | Msa0844350:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 22758971 | 22760026 | 22758971 | ID=Msa0844350;Name=Msa0844350 |
chr5_4 | mRNA | 22758971 | 22760026 | 22758971 | ID=Msa0844350-mRNA-1;Parent=Msa0844350;Name=Msa0844350-mRNA-1;_AED=0.33;_eAED=0.33;_QI=149|1|1|1|1|1|3|241|126 |
chr5_4 | exon | 22758971 | 22759343 | 22758971 | ID=Msa0844350-mRNA-1:exon:9286;Parent=Msa0844350-mRNA-1 |
chr5_4 | exon | 22759540 | 22759662 | 22759540 | ID=Msa0844350-mRNA-1:exon:9285;Parent=Msa0844350-mRNA-1 |
chr5_4 | exon | 22759752 | 22760026 | 22759752 | ID=Msa0844350-mRNA-1:exon:9284;Parent=Msa0844350-mRNA-1 |
chr5_4 | five_prime_UTR | 22759878 | 22760026 | 22759878 | ID=Msa0844350-mRNA-1:five_prime_utr;Parent=Msa0844350-mRNA-1 |
chr5_4 | CDS | 22759752 | 22759877 | 22759752 | ID=Msa0844350-mRNA-1:cds;Parent=Msa0844350-mRNA-1 |
chr5_4 | CDS | 22759540 | 22759662 | 22759540 | ID=Msa0844350-mRNA-1:cds;Parent=Msa0844350-mRNA-1 |
chr5_4 | CDS | 22759212 | 22759343 | 22759212 | ID=Msa0844350-mRNA-1:cds;Parent=Msa0844350-mRNA-1 |
chr5_4 | three_prime_UTR | 22758971 | 22759211 | 22758971 | ID=Msa0844350-mRNA-1:three_prime_utr;Parent=Msa0844350-mRNA-1 |
Gene Sequence |
Protein sequence |