Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724490 | XP_003613544.1 | 87.943 | 141 | 2 | 1 | 1 | 141 | 1 | 126 | 3.34e-83 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724490 | sp|Q38879|TRXH2_ARATH | 42.857 | 126 | 57 | 1 | 15 | 140 | 22 | 132 | 1.94e-36 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724490 | D8L5E0 | 87.943 | 141 | 2 | 1 | 1 | 141 | 1 | 126 | 1.59e-83 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0724490 | 0.815498 | 8.966259e-52 | -8.615850e-47 |
| Msa0039200 | Msa0724490 | 0.829919 | 3.930904e-55 | -8.615850e-47 |
| Msa0046670 | Msa0724490 | 0.804955 | 1.685246e-49 | -8.615850e-47 |
| Msa0077330 | Msa0724490 | 0.826257 | 2.995727e-54 | -8.615850e-47 |
| Msa0083200 | Msa0724490 | 0.834317 | 3.214946e-56 | -8.615850e-47 |
| Msa0086820 | Msa0724490 | 0.829708 | 4.424691e-55 | -8.615850e-47 |
| Msa0110520 | Msa0724490 | 0.811317 | 7.438715e-51 | -8.615850e-47 |
| Msa0112800 | Msa0724490 | 0.817987 | 2.479793e-52 | -8.615850e-47 |
| Msa0623360 | Msa0724490 | 0.835310 | 1.808051e-56 | -8.615850e-47 |
| Msa0626890 | Msa0724490 | 0.801578 | 8.426562e-49 | -8.615850e-47 |
| Msa0713530 | Msa0724490 | 0.837988 | 3.755282e-57 | -8.615850e-47 |
| Msa0724490 | Msa0724500 | 0.933594 | 1.478639e-95 | -8.615850e-47 |
| Msa0724490 | Msa0729780 | 0.800672 | 1.291395e-48 | -8.615850e-47 |
| Msa0724490 | Msa0731740 | 0.804463 | 2.133996e-49 | -8.615850e-47 |
| Msa0724490 | Msa0736930 | 0.818590 | 1.810660e-52 | -8.615850e-47 |
| Msa0724490 | Msa0738600 | 0.829845 | 4.098382e-55 | -8.615850e-47 |
| Msa0724490 | Msa0751000 | 0.837057 | 6.505118e-57 | -8.615850e-47 |
| Msa0724490 | Msa0755590 | 0.834436 | 3.000020e-56 | -8.615850e-47 |
| Msa0724490 | Msa0765010 | 0.870492 | 1.400800e-66 | -8.615850e-47 |
| Msa0724490 | Msa0765020 | 0.950443 | 1.629796e-108 | -8.615850e-47 |
| Msa0724490 | Msa0765040 | 0.921703 | 2.545599e-88 | -8.615850e-47 |
| Msa0724490 | Msa0794040 | 0.857894 | 1.195778e-62 | -8.615850e-47 |
| Msa0724490 | Msa0797240 | 0.824364 | 8.401330e-54 | -8.615850e-47 |
| Msa0724490 | Msa0818950 | 0.835301 | 1.816999e-56 | -8.615850e-47 |
| Msa0724490 | Msa0835010 | 0.834675 | 2.613544e-56 | -8.615850e-47 |
| Msa0724490 | Msa0844330 | 0.927220 | 1.591528e-91 | -8.615850e-47 |
| Msa0724490 | Msa0844350 | 0.933634 | 1.391237e-95 | -8.615850e-47 |
| Msa0724490 | Msa0850520 | 0.805541 | 1.269824e-49 | -8.615850e-47 |
| Msa0724490 | Msa0897390 | 0.800956 | 1.130051e-48 | -8.615850e-47 |
| Msa0724490 | Msa0984850 | 0.807286 | 5.443387e-50 | -8.615850e-47 |
| Msa0724490 | Msa1016130 | 0.805420 | 1.346256e-49 | -8.615850e-47 |
| Msa0724490 | Msa1031220 | 0.825482 | 4.575582e-54 | -8.615850e-47 |
| Msa0724490 | Msa1041550 | 0.862040 | 6.716240e-64 | -8.615850e-47 |
| Msa0724490 | Msa1070810 | -0.818019 | 2.437909e-52 | -8.615850e-47 |
| Msa0724490 | Msa1081530 | 0.846496 | 2.093976e-59 | -8.615850e-47 |
| Msa0724490 | Msa1132320 | 0.848888 | 4.600295e-60 | -8.615850e-47 |
| Msa0724490 | Msa1158630 | -0.817004 | 4.129191e-52 | -8.615850e-47 |
| Msa0724490 | Msa1166450 | 0.868452 | 6.460606e-66 | -8.615850e-47 |
| Msa0724490 | Msa1173410 | 0.811281 | 7.572009e-51 | -8.615850e-47 |
| Msa0724490 | Msa1188380 | 0.852768 | 3.716921e-61 | -8.615850e-47 |
| Msa0724490 | Msa1201610 | 0.811593 | 6.479697e-51 | -8.615850e-47 |
| Msa0724490 | Msa1203090 | 0.807159 | 5.791259e-50 | -8.615850e-47 |
| Msa0724490 | Msa1208250 | 0.803555 | 3.295858e-49 | -8.615850e-47 |
| Msa0724490 | Msa1216700 | 0.820513 | 6.593072e-53 | -8.615850e-47 |
| Msa0724490 | Msa1216900 | 0.816583 | 5.130826e-52 | -8.615850e-47 |
| Msa0724490 | Msa1223510 | 0.814005 | 1.920102e-51 | -8.615850e-47 |
| Msa0724490 | Msa1224690 | 0.861436 | 1.027167e-63 | -8.615850e-47 |
| Msa0724490 | Msa1235770 | 0.806540 | 7.826885e-50 | -8.615850e-47 |
| Msa0724490 | Msa1242430 | 0.840994 | 6.217049e-58 | -8.615850e-47 |
| Msa0724490 | Msa1242990 | 0.813145 | 2.968136e-51 | -8.615850e-47 |
| Msa0724490 | Msa1254470 | 0.804213 | 2.406582e-49 | -8.615850e-47 |
| Msa0724490 | Msa1263610 | 0.832608 | 8.577875e-56 | -8.615850e-47 |
| Msa0724490 | Msa1264230 | 0.816513 | 5.320766e-52 | -8.615850e-47 |
| Msa0724490 | Msa1266720 | 0.823960 | 1.045202e-53 | -8.615850e-47 |
| Msa0724490 | Msa1294520 | 0.824785 | 6.688411e-54 | -8.615850e-47 |
| Msa0724490 | Msa1302920 | 0.825549 | 4.412742e-54 | -8.615850e-47 |
| Msa0724490 | Msa1329660 | 0.803300 | 3.723155e-49 | -8.615850e-47 |
| Msa0724490 | Msa1331730 | 0.801900 | 7.238736e-49 | -8.615850e-47 |
| Msa0724490 | Msa1351560 | 0.824796 | 6.646372e-54 | -8.615850e-47 |
| Msa0724490 | Msa1357380 | 0.805747 | 1.149969e-49 | -8.615850e-47 |
| Msa0724490 | Msa1357720 | 0.850490 | 1.641600e-60 | -8.615850e-47 |
| Msa0724490 | Msa1385940 | 0.807366 | 5.235468e-50 | -8.615850e-47 |
| Msa0724490 | Msa1400600 | 0.825726 | 4.005775e-54 | -8.615850e-47 |
| Msa0724490 | Msa1405470 | 0.802160 | 6.399319e-49 | -8.615850e-47 |
| Msa0724490 | Msa1407200 | 0.864965 | 8.316455e-65 | -8.615850e-47 |
| Msa0724490 | Msa1409050 | 0.876377 | 1.465938e-68 | -8.615850e-47 |
| Msa0724490 | Msa1409760 | 0.869674 | 2.593232e-66 | -8.615850e-47 |
| Msa0724490 | Msa1415120 | 0.808029 | 3.784950e-50 | -8.615850e-47 |
| Msa0724490 | Msa1433380 | 0.834740 | 2.517047e-56 | -8.615850e-47 |
| Msa0724490 | Msa1439160 | 0.826575 | 2.515895e-54 | -8.615850e-47 |
| Msa0724490 | Msa1459630 | 0.814035 | 1.891413e-51 | -8.615850e-47 |
| Msa0133670 | Msa0724490 | 0.828314 | 9.629365e-55 | -8.615850e-47 |
| Msa0133880 | Msa0724490 | 0.832499 | 9.130790e-56 | -8.615850e-47 |
| Msa0166580 | Msa0724490 | 0.821038 | 4.992927e-53 | -8.615850e-47 |
| Msa0175480 | Msa0724490 | 0.849506 | 3.095096e-60 | -8.615850e-47 |
| Msa0181290 | Msa0724490 | 0.810504 | 1.115660e-50 | -8.615850e-47 |
| Msa0184030 | Msa0724490 | 0.818111 | 2.323845e-52 | -8.615850e-47 |
| Msa0184120 | Msa0724490 | 0.828040 | 1.121365e-54 | -8.615850e-47 |
| Msa0207530 | Msa0724490 | 0.838848 | 2.252881e-57 | -8.615850e-47 |
| Msa0207900 | Msa0724490 | 0.848472 | 5.996797e-60 | -8.615850e-47 |
| Msa0207990 | Msa0724490 | 0.805109 | 1.564432e-49 | -8.615850e-47 |
| Msa0216560 | Msa0724490 | 0.800392 | 1.472521e-48 | -8.615850e-47 |
| Msa0218480 | Msa0724490 | 0.818594 | 1.806713e-52 | -8.615850e-47 |
| Msa0218590 | Msa0724490 | 0.820317 | 7.310961e-53 | -8.615850e-47 |
| Msa0222720 | Msa0724490 | 0.815106 | 1.095496e-51 | -8.615850e-47 |
| Msa0369750 | Msa0724490 | 0.827227 | 1.757707e-54 | -8.615850e-47 |
| Msa0379720 | Msa0724490 | 0.807178 | 5.739548e-50 | -8.615850e-47 |
| Msa0420080 | Msa0724490 | 0.808181 | 3.513227e-50 | -8.615850e-47 |
| Msa0429100 | Msa0724490 | 0.802961 | 4.375135e-49 | -8.615850e-47 |
| Msa0429130 | Msa0724490 | 0.815316 | 9.841959e-52 | -8.615850e-47 |
| Msa0463960 | Msa0724490 | 0.821210 | 4.556605e-53 | -8.615850e-47 |
| Msa0466090 | Msa0724490 | 0.800190 | 1.619243e-48 | -8.615850e-47 |
| Msa0473320 | Msa0724490 | 0.800638 | 1.311820e-48 | -8.615850e-47 |
| Msa0256170 | Msa0724490 | 0.826922 | 2.079164e-54 | -8.615850e-47 |
| Msa0264020 | Msa0724490 | 0.815901 | 7.288847e-52 | -8.615850e-47 |
| Msa0266380 | Msa0724490 | 0.800295 | 1.541225e-48 | -8.615850e-47 |
| Msa0270610 | Msa0724490 | 0.802404 | 5.702136e-49 | -8.615850e-47 |
| Msa0295840 | Msa0724490 | 0.811944 | 5.432662e-51 | -8.615850e-47 |
| Msa0334180 | Msa0724490 | 0.815325 | 9.796021e-52 | -8.615850e-47 |
| Msa0509510 | Msa0724490 | 0.828853 | 7.134432e-55 | -8.615850e-47 |
| Msa0521100 | Msa0724490 | 0.815262 | 1.011728e-51 | -8.615850e-47 |
| Msa0540120 | Msa0724490 | 0.800169 | 1.635071e-48 | -8.615850e-47 |
| Msa0581440 | Msa0724490 | 0.802728 | 4.888962e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724490 | MtrunA17_Chr5g0415741 | 87.943 | 141 | 2 | 1 | 1 | 141 | 1 | 126 | 3.07e-87 | 250 |
| Msa0724490 | MtrunA17_Chr5g0415761 | 60.140 | 143 | 40 | 2 | 1 | 141 | 1 | 128 | 1.00e-47 | 150 |
| Msa0724490 | MtrunA17_Chr5g0415771 | 59.574 | 141 | 41 | 2 | 1 | 140 | 1 | 126 | 1.61e-47 | 149 |
| Msa0724490 | MtrunA17_Chr7g0216481 | 48.760 | 121 | 47 | 1 | 20 | 140 | 28 | 133 | 8.01e-39 | 127 |
| Msa0724490 | MtrunA17_Chr3g0142051 | 41.270 | 126 | 59 | 1 | 14 | 139 | 2 | 112 | 1.68e-32 | 111 |
| Msa0724490 | MtrunA17_Chr1g0155721 | 37.500 | 128 | 65 | 1 | 14 | 141 | 2 | 114 | 7.67e-31 | 107 |
| Msa0724490 | MtrunA17_Chr5g0404831 | 38.889 | 126 | 62 | 1 | 14 | 139 | 4 | 114 | 2.00e-30 | 106 |
| Msa0724490 | MtrunA17_Chr8g0393201 | 37.288 | 118 | 59 | 1 | 19 | 136 | 228 | 330 | 4.87e-21 | 86.7 |
| Msa0724490 | MtrunA17_Chr8g0334481 | 30.000 | 120 | 69 | 1 | 17 | 136 | 25 | 129 | 8.71e-20 | 79.7 |
| Msa0724490 | MtrunA17_Chr7g0245141 | 31.667 | 120 | 67 | 1 | 17 | 136 | 23 | 127 | 1.03e-19 | 79.3 |
| Msa0724490 | MtrunA17_Chr2g0280411 | 34.167 | 120 | 64 | 1 | 18 | 137 | 9 | 113 | 2.11e-19 | 78.2 |
| Msa0724490 | MtrunA17_Chr4g0042051 | 32.787 | 122 | 63 | 3 | 18 | 137 | 10 | 114 | 2.25e-17 | 73.2 |
| Msa0724490 | MtrunA17_Chr2g0319291 | 28.333 | 120 | 71 | 1 | 18 | 137 | 10 | 114 | 3.38e-16 | 69.7 |
| Msa0724490 | MtrunA17_Chr7g0249461 | 34.314 | 102 | 53 | 2 | 40 | 141 | 98 | 185 | 1.72e-13 | 64.3 |
| Msa0724490 | MtrunA17_Chr4g0052481 | 27.966 | 118 | 72 | 2 | 21 | 138 | 62 | 166 | 6.84e-13 | 62.4 |
| Msa0724490 | MtrunA17_Chr1g0201781 | 28.713 | 101 | 54 | 4 | 39 | 138 | 77 | 160 | 3.72e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724490 | AT5G39950.1 | 42.857 | 126 | 57 | 1 | 15 | 140 | 22 | 132 | 1.98e-37 | 124 |
| Msa0724490 | AT1G59730.1 | 37.762 | 143 | 71 | 2 | 1 | 140 | 1 | 128 | 4.27e-31 | 108 |
| Msa0724490 | AT1G69880.1 | 40.984 | 122 | 57 | 2 | 17 | 138 | 36 | 142 | 2.19e-30 | 107 |
| Msa0724490 | AT3G51030.1 | 37.600 | 125 | 63 | 1 | 14 | 138 | 2 | 111 | 1.29e-29 | 104 |
| Msa0724490 | AT1G19730.1 | 42.063 | 126 | 57 | 2 | 14 | 138 | 2 | 112 | 2.42e-29 | 103 |
| Msa0724490 | AT1G45145.1 | 39.669 | 121 | 58 | 1 | 18 | 138 | 5 | 110 | 3.57e-28 | 100 |
| Msa0724490 | AT5G42980.1 | 38.400 | 125 | 62 | 1 | 17 | 141 | 4 | 113 | 3.08e-27 | 98.2 |
| Msa0724490 | AT3G17880.1 | 35.593 | 118 | 61 | 1 | 19 | 136 | 271 | 373 | 3.99e-19 | 82.4 |
| Msa0724490 | AT3G17880.2 | 35.593 | 118 | 61 | 1 | 19 | 136 | 264 | 366 | 4.27e-19 | 82.0 |
| Msa0724490 | AT3G56420.1 | 32.710 | 107 | 57 | 1 | 28 | 134 | 50 | 141 | 1.00e-17 | 75.1 |
| Msa0724490 | AT3G56420.2 | 32.710 | 107 | 57 | 1 | 28 | 134 | 50 | 141 | 1.00e-17 | 75.1 |
| Msa0724490 | AT3G56420.3 | 32.710 | 107 | 57 | 1 | 28 | 134 | 50 | 141 | 1.00e-17 | 75.1 |
| Msa0724490 | AT3G08710.2 | 29.365 | 126 | 72 | 2 | 11 | 136 | 18 | 126 | 1.26e-16 | 71.6 |
| Msa0724490 | AT3G08710.3 | 29.365 | 126 | 72 | 2 | 11 | 136 | 18 | 126 | 1.26e-16 | 71.6 |
| Msa0724490 | AT3G08710.1 | 29.365 | 126 | 72 | 2 | 11 | 136 | 18 | 126 | 1.26e-16 | 71.6 |
| Msa0724490 | AT1G11530.1 | 30.000 | 120 | 69 | 1 | 18 | 137 | 2 | 106 | 2.63e-15 | 67.8 |
| Msa0724490 | AT5G16400.1 | 33.333 | 102 | 54 | 1 | 40 | 141 | 97 | 184 | 1.94e-14 | 67.0 |
| Msa0724490 | AT3G02730.1 | 35.644 | 101 | 51 | 2 | 41 | 141 | 88 | 174 | 5.35e-14 | 65.9 |
| Msa0724490 | AT2G40790.2 | 28.947 | 114 | 66 | 1 | 28 | 141 | 50 | 148 | 1.55e-13 | 63.9 |
| Msa0724490 | AT2G40790.1 | 28.947 | 114 | 66 | 1 | 28 | 141 | 50 | 148 | 1.55e-13 | 63.9 |
| Msa0724490 | AT1G43560.1 | 25.342 | 146 | 87 | 5 | 1 | 141 | 33 | 161 | 1.21e-12 | 62.0 |
| Msa0724490 | AT4G03520.1 | 37.209 | 86 | 38 | 3 | 43 | 127 | 101 | 171 | 1.91e-11 | 59.3 |
Find 37 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCATTCCACTGCTAAA+TGG | 0.238150 | 5_1:-23073019 | Msa0724490:CDS |
| GCTTGATGTCGATGAGTTAA+TGG | 0.243334 | 5_1:-23072767 | Msa0724490:intron |
| GCAGCAAAATCTTTCATAAC+TGG | 0.263663 | 5_1:+23072817 | None:intergenic |
| TTATTGATTTCACAGCTAAA+TGG | 0.322109 | 5_1:-23072864 | Msa0724490:CDS |
| CCCACAATATAATTGGCAAC+AGG | 0.356350 | 5_1:-23072614 | Msa0724490:CDS |
| TGTTAATTTGTTGGGATGAT+TGG | 0.356739 | 5_1:+23073185 | None:intergenic |
| TTGTTGGGATGATTGGAAAT+TGG | 0.378161 | 5_1:+23073192 | None:intergenic |
| TATGATGTTTGTTAATTTGT+TGG | 0.396039 | 5_1:+23073176 | None:intergenic |
| GGGAGTGTCTCAGACCTTCC+AGG | 0.411291 | 5_1:-23072593 | Msa0724490:CDS |
| TAAAGTGGTGGGAGCAAGAA+AGG | 0.432390 | 5_1:-23072521 | Msa0724490:CDS |
| CCTGTTGCCAATTATATTGT+GGG | 0.436903 | 5_1:+23072614 | None:intergenic |
| TTCTTAATGAGTAGAAAAGT+TGG | 0.438267 | 5_1:+23072559 | None:intergenic |
| ATGATGTTTGTTAATTTGTT+GGG | 0.458297 | 5_1:+23073177 | None:intergenic |
| CCCTGTTGCCAATTATATTG+TGG | 0.464449 | 5_1:+23072613 | None:intergenic |
| GGGATGATTGGAAATTGGTT+GGG | 0.476532 | 5_1:+23073197 | None:intergenic |
| TGGGATGATTGGAAATTGGT+TGG | 0.482987 | 5_1:+23073196 | None:intergenic |
| GTGTGGACCTTGCAAAGTTA+TGG | 0.487071 | 5_1:-23072842 | Msa0724490:CDS |
| AGGAAAGGTTGTTGATAAAG+TGG | 0.493130 | 5_1:-23072536 | Msa0724490:CDS |
| TAGCAGTGGAATGGAATGTA+AGG | 0.498154 | 5_1:+23073024 | None:intergenic |
| CTGCAAAATACACTGATGTT+GGG | 0.498670 | 5_1:-23072798 | Msa0724490:CDS |
| GCTGCAAAATACACTGATGT+TGG | 0.511854 | 5_1:-23072799 | Msa0724490:CDS |
| TCTACTCATTAAGAAAGGAA+AGG | 0.517021 | 5_1:-23072551 | Msa0724490:CDS |
| ATACACAAAATTATACAAGT+TGG | 0.527315 | 5_1:+23073076 | None:intergenic |
| CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_1:+23073015 | None:intergenic |
| GGGATATATATAGTGTAGAA+AGG | 0.532837 | 5_1:+23073217 | None:intergenic |
| TGGAATGGAATGTAAGGACA+TGG | 0.568326 | 5_1:+23073030 | None:intergenic |
| AAGTTGGCAATGAATGCACC+TGG | 0.579245 | 5_1:+23072575 | None:intergenic |
| GATTTCACAGCTAAATGGTG+TGG | 0.590907 | 5_1:-23072859 | Msa0724490:CDS |
| AAGGTTGTTGATAAAGTGGT+GGG | 0.601867 | 5_1:-23072532 | Msa0724490:CDS |
| CCACAATATAATTGGCAACA+GGG | 0.601984 | 5_1:-23072613 | Msa0724490:CDS |
| ACTGGATCCATAACTTTGCA+AGG | 0.602265 | 5_1:+23072835 | None:intergenic |
| ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5_1:+23073010 | None:intergenic |
| AAAGGTTGTTGATAAAGTGG+TGG | 0.610487 | 5_1:-23072533 | Msa0724490:CDS |
| TGGCAATGAATGCACCTGGA+AGG | 0.611957 | 5_1:+23072579 | None:intergenic |
| CAAGAAAGGAGGAACTTCAA+AGG | 0.620784 | 5_1:-23072507 | Msa0724490:CDS |
| AGTGGTGGGAGCAAGAAAGG+AGG | 0.703427 | 5_1:-23072518 | Msa0724490:CDS |
| GGAATGGAATGTAAGGACAT+GGG | 0.736550 | 5_1:+23073031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_1:23072721-23072740 | Msa0724490:intron | 15.0% |
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_1:23072721-23072740 | Msa0724490:intron | 15.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_1:23072526-23072545 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_1:23072527-23072546 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_1:23072627-23072646 | None:intergenic | 20.0% |
| !!! | TCTTATGCATTATTTTTCTT+TGG | - | chr5_1:23072804-23072823 | Msa0724490:CDS | 20.0% |
| !!! | TTATTTTTCTTTGGTATAGA+TGG | - | chr5_1:23072813-23072832 | Msa0724490:CDS | 20.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_1:23072526-23072545 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_1:23072527-23072546 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_1:23072627-23072646 | None:intergenic | 20.0% |
| !!! | TCTTATGCATTATTTTTCTT+TGG | - | chr5_1:23072804-23072823 | Msa0724490:CDS | 20.0% |
| !!! | TTATTTTTCTTTGGTATAGA+TGG | - | chr5_1:23072813-23072832 | Msa0724490:CDS | 20.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_1:23072573-23072592 | Msa0724490:CDS | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_1:23072582-23072601 | None:intergenic | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_1:23072836-23072855 | Msa0724490:CDS | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_1:23072974-23072993 | None:intergenic | 25.0% |
| !! | TGTTTTTCCCACAATATAAT+TGG | - | chr5_1:23073079-23073098 | Msa0724490:CDS | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_1:23073144-23073163 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_1:23073144-23073163 | Msa0724490:five_prime_UTR | 25.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_1:23072573-23072592 | Msa0724490:CDS | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_1:23072582-23072601 | None:intergenic | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_1:23072836-23072855 | Msa0724490:CDS | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_1:23072974-23072993 | None:intergenic | 25.0% |
| !! | TGTTTTTCCCACAATATAAT+TGG | - | chr5_1:23073079-23073098 | Msa0724490:CDS | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_1:23073144-23073163 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_1:23073144-23073163 | Msa0724490:five_prime_UTR | 25.0% |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_1:23072486-23072505 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_1:23072518-23072537 | None:intergenic | 30.0% |
| TCTACTCATTAAGAAAGGAA+AGG | - | chr5_1:23073149-23073168 | Msa0724490:five_prime_UTR | 30.0% | |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_1:23072486-23072505 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_1:23072518-23072537 | None:intergenic | 30.0% |
| TCTACTCATTAAGAAAGGAA+AGG | - | chr5_1:23073149-23073168 | Msa0724490:five_prime_UTR | 30.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_1:23072511-23072530 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_1:23072886-23072905 | None:intergenic | 35.0% | |
| CTGCAAAATACACTGATGTT+GGG | - | chr5_1:23072902-23072921 | Msa0724490:intron | 35.0% | |
| CCTGTTGCCAATTATATTGT+GGG | + | chr5_1:23073089-23073108 | None:intergenic | 35.0% | |
| CCACAATATAATTGGCAACA+GGG | - | chr5_1:23073087-23073106 | Msa0724490:exon | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_1:23073164-23073183 | Msa0724490:five_prime_UTR | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_1:23073167-23073186 | Msa0724490:five_prime_UTR | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_1:23073168-23073187 | Msa0724490:five_prime_UTR | 35.0% |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_1:23072511-23072530 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_1:23072886-23072905 | None:intergenic | 35.0% | |
| CTGCAAAATACACTGATGTT+GGG | - | chr5_1:23072902-23072921 | Msa0724490:intron | 35.0% | |
| CCTGTTGCCAATTATATTGT+GGG | + | chr5_1:23073089-23073108 | None:intergenic | 35.0% | |
| CCACAATATAATTGGCAACA+GGG | - | chr5_1:23073087-23073106 | Msa0724490:exon | 35.0% | |
| ! | AGGAAAGGTTGTTGATAAAG+TGG | - | chr5_1:23073164-23073183 | Msa0724490:five_prime_UTR | 35.0% |
| ! | AAAGGTTGTTGATAAAGTGG+TGG | - | chr5_1:23073167-23073186 | Msa0724490:five_prime_UTR | 35.0% |
| ! | AAGGTTGTTGATAAAGTGGT+GGG | - | chr5_1:23073168-23073187 | Msa0724490:five_prime_UTR | 35.0% |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_1:23072506-23072525 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_1:23072507-23072526 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_1:23072672-23072691 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_1:23072673-23072692 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_1:23072679-23072698 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_1:23072681-23072700 | Msa0724490:intron | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_1:23072688-23072707 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_1:23072693-23072712 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_1:23072841-23072860 | Msa0724490:CDS | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_1:23072868-23072887 | None:intergenic | 40.0% | |
| GCTGCAAAATACACTGATGT+TGG | - | chr5_1:23072901-23072920 | Msa0724490:intron | 40.0% | |
| GCTTGATGTCGATGAGTTAA+TGG | - | chr5_1:23072933-23072952 | Msa0724490:intron | 40.0% | |
| ACAAATCAGTTCTCAAGTGC+TGG | + | chr5_1:23073062-23073081 | None:intergenic | 40.0% | |
| CCCACAATATAATTGGCAAC+AGG | - | chr5_1:23073086-23073105 | Msa0724490:CDS | 40.0% | |
| CCCTGTTGCCAATTATATTG+TGG | + | chr5_1:23073090-23073109 | None:intergenic | 40.0% | |
| CAAGAAAGGAGGAACTTCAA+AGG | - | chr5_1:23073193-23073212 | Msa0724490:five_prime_UTR | 40.0% | |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_1:23072506-23072525 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_1:23072507-23072526 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_1:23072672-23072691 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_1:23072673-23072692 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_1:23072679-23072698 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_1:23072681-23072700 | Msa0724490:intron | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_1:23072688-23072707 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_1:23072693-23072712 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_1:23072841-23072860 | Msa0724490:CDS | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_1:23072868-23072887 | None:intergenic | 40.0% | |
| GCTGCAAAATACACTGATGT+TGG | - | chr5_1:23072901-23072920 | Msa0724490:intron | 40.0% | |
| GCTTGATGTCGATGAGTTAA+TGG | - | chr5_1:23072933-23072952 | Msa0724490:intron | 40.0% | |
| ACAAATCAGTTCTCAAGTGC+TGG | + | chr5_1:23073062-23073081 | None:intergenic | 40.0% | |
| CCCACAATATAATTGGCAAC+AGG | - | chr5_1:23073086-23073105 | Msa0724490:CDS | 40.0% | |
| CCCTGTTGCCAATTATATTG+TGG | + | chr5_1:23073090-23073109 | None:intergenic | 40.0% | |
| CAAGAAAGGAGGAACTTCAA+AGG | - | chr5_1:23073193-23073212 | Msa0724490:five_prime_UTR | 40.0% | |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_1:23072858-23072877 | Msa0724490:CDS | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_1:23073128-23073147 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_1:23073179-23073198 | Msa0724490:five_prime_UTR | 45.0% |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_1:23072858-23072877 | Msa0724490:CDS | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_1:23073128-23073147 | None:intergenic | 45.0% | |
| ! | TAAAGTGGTGGGAGCAAGAA+AGG | - | chr5_1:23073179-23073198 | Msa0724490:five_prime_UTR | 45.0% |
| TGGCAATGAATGCACCTGGA+AGG | + | chr5_1:23073124-23073143 | None:intergenic | 50.0% | |
| TGGCAATGAATGCACCTGGA+AGG | + | chr5_1:23073124-23073143 | None:intergenic | 50.0% | |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_1:23073182-23073201 | Msa0724490:five_prime_UTR | 55.0% |
| ! | AGTGGTGGGAGCAAGAAAGG+AGG | - | chr5_1:23073182-23073201 | Msa0724490:five_prime_UTR | 55.0% |
| !! | GGGAGTGTCTCAGACCTTCC+AGG | - | chr5_1:23073107-23073126 | Msa0724490:five_prime_UTR | 60.0% |
| !! | GGGAGTGTCTCAGACCTTCC+AGG | - | chr5_1:23073107-23073126 | Msa0724490:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23072483 | 23073239 | 23072483 | ID=Msa0724490;Name=Msa0724490 |
| chr5_1 | mRNA | 23072483 | 23073239 | 23072483 | ID=Msa0724490-mRNA-1;Parent=Msa0724490;Name=Msa0724490-mRNA-1;_AED=0.34;_eAED=0.39;_QI=134|0.5|0.66|1|1|1|3|0|141 |
| chr5_1 | exon | 23072483 | 23072659 | 23072483 | ID=Msa0724490-mRNA-1:exon:8653;Parent=Msa0724490-mRNA-1 |
| chr5_1 | exon | 23072768 | 23072890 | 23072768 | ID=Msa0724490-mRNA-1:exon:8652;Parent=Msa0724490-mRNA-1 |
| chr5_1 | exon | 23072980 | 23073239 | 23072980 | ID=Msa0724490-mRNA-1:exon:8651;Parent=Msa0724490-mRNA-1 |
| chr5_1 | five_prime_UTR | 23073106 | 23073239 | 23073106 | ID=Msa0724490-mRNA-1:five_prime_utr;Parent=Msa0724490-mRNA-1 |
| chr5_1 | CDS | 23072980 | 23073105 | 23072980 | ID=Msa0724490-mRNA-1:cds;Parent=Msa0724490-mRNA-1 |
| chr5_1 | CDS | 23072768 | 23072890 | 23072768 | ID=Msa0724490-mRNA-1:cds;Parent=Msa0724490-mRNA-1 |
| chr5_1 | CDS | 23072483 | 23072659 | 23072483 | ID=Msa0724490-mRNA-1:cds;Parent=Msa0724490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
