Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765020 | sp|Q38879|TRXH2_ARATH | 46.847 | 111 | 59 | 0 | 15 | 125 | 22 | 132 | 6.55e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765020 | D8L5E0 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 1.50e-87 | 259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0765020 | 0.831751 | 1.397548e-55 | -8.615850e-47 |
| Msa0039200 | Msa0765020 | 0.832658 | 8.338560e-56 | -8.615850e-47 |
| Msa0046670 | Msa0765020 | 0.811709 | 6.113924e-51 | -8.615850e-47 |
| Msa0055650 | Msa0765020 | 0.802053 | 6.731470e-49 | -8.615850e-47 |
| Msa0077330 | Msa0765020 | 0.825394 | 4.801688e-54 | -8.615850e-47 |
| Msa0083200 | Msa0765020 | 0.819285 | 1.258291e-52 | -8.615850e-47 |
| Msa0086820 | Msa0765020 | 0.834284 | 3.276578e-56 | -8.615850e-47 |
| Msa0110520 | Msa0765020 | 0.834022 | 3.810666e-56 | -8.615850e-47 |
| Msa0112800 | Msa0765020 | 0.828749 | 7.561521e-55 | -8.615850e-47 |
| Msa0623360 | Msa0765020 | 0.842282 | 2.844515e-58 | -8.615850e-47 |
| Msa0626890 | Msa0765020 | 0.804921 | 1.712952e-49 | -8.615850e-47 |
| Msa0664130 | Msa0765020 | 0.800624 | 1.320525e-48 | -8.615850e-47 |
| Msa0685880 | Msa0765020 | 0.802649 | 5.076032e-49 | -8.615850e-47 |
| Msa0713530 | Msa0765020 | 0.824989 | 5.984475e-54 | -8.615850e-47 |
| Msa0724490 | Msa0765020 | 0.950443 | 1.629796e-108 | -8.615850e-47 |
| Msa0724500 | Msa0765020 | 0.882768 | 7.897284e-71 | -8.615850e-47 |
| Msa0736930 | Msa0765020 | 0.816969 | 4.203822e-52 | -8.615850e-47 |
| Msa0738600 | Msa0765020 | 0.832938 | 7.102137e-56 | -8.615850e-47 |
| Msa0751000 | Msa0765020 | 0.831419 | 1.687073e-55 | -8.615850e-47 |
| Msa0755590 | Msa0765020 | 0.823774 | 1.155623e-53 | -8.615850e-47 |
| Msa0756410 | Msa0765020 | 0.820363 | 7.134584e-53 | -8.615850e-47 |
| Msa0765010 | Msa0765020 | 0.900596 | 6.252194e-78 | -8.615850e-47 |
| Msa0765020 | Msa0765040 | 0.932396 | 9.069705e-95 | -8.615850e-47 |
| Msa0765020 | Msa0782030 | 0.802456 | 5.561066e-49 | -8.615850e-47 |
| Msa0765020 | Msa0788430 | 0.801813 | 7.541930e-49 | -8.615850e-47 |
| Msa0765020 | Msa0794040 | 0.845598 | 3.674236e-59 | -8.615850e-47 |
| Msa0765020 | Msa0797240 | 0.820914 | 5.333208e-53 | -8.615850e-47 |
| Msa0765020 | Msa0815950 | 0.810848 | 9.398780e-51 | -8.615850e-47 |
| Msa0765020 | Msa0818950 | 0.838934 | 2.140259e-57 | -8.615850e-47 |
| Msa0765020 | Msa0826560 | 0.811482 | 6.848609e-51 | -8.615850e-47 |
| Msa0765020 | Msa0835010 | 0.820999 | 5.096396e-53 | -8.615850e-47 |
| Msa0765020 | Msa0844330 | 0.928926 | 1.444279e-92 | -8.615850e-47 |
| Msa0765020 | Msa0844350 | 0.959932 | 5.453637e-118 | -8.615850e-47 |
| Msa0765020 | Msa0861480 | 0.801934 | 7.121588e-49 | -8.615850e-47 |
| Msa0765020 | Msa0861560 | 0.814144 | 1.788849e-51 | -8.615850e-47 |
| Msa0765020 | Msa0883390 | 0.802483 | 5.492339e-49 | -8.615850e-47 |
| Msa0765020 | Msa0883410 | 0.807344 | 5.291357e-50 | -8.615850e-47 |
| Msa0765020 | Msa0883430 | 0.817564 | 3.089326e-52 | -8.615850e-47 |
| Msa0765020 | Msa0883690 | 0.819115 | 1.375464e-52 | -8.615850e-47 |
| Msa0765020 | Msa0897390 | 0.811121 | 8.201457e-51 | -8.615850e-47 |
| Msa0765020 | Msa0957800 | 0.808534 | 2.954483e-50 | -8.615850e-47 |
| Msa0765020 | Msa0967450 | 0.804765 | 1.846137e-49 | -8.615850e-47 |
| Msa0765020 | Msa0984820 | 0.823007 | 1.746013e-53 | -8.615850e-47 |
| Msa0765020 | Msa0984830 | 0.830377 | 3.039695e-55 | -8.615850e-47 |
| Msa0765020 | Msa0984840 | 0.828826 | 7.245439e-55 | -8.615850e-47 |
| Msa0765020 | Msa0984850 | 0.834561 | 2.791723e-56 | -8.615850e-47 |
| Msa0765020 | Msa0984860 | 0.821935 | 3.099631e-53 | -8.615850e-47 |
| Msa0765020 | Msa0985040 | 0.816515 | 5.314234e-52 | -8.615850e-47 |
| Msa0765020 | Msa1016130 | 0.805984 | 1.024921e-49 | -8.615850e-47 |
| Msa0765020 | Msa1031220 | 0.827680 | 1.368421e-54 | -8.615850e-47 |
| Msa0765020 | Msa1041550 | 0.874318 | 7.415046e-68 | -8.615850e-47 |
| Msa0765020 | Msa1071310 | 0.821768 | 3.386898e-53 | -8.615850e-47 |
| Msa0765020 | Msa1081530 | 0.857548 | 1.514279e-62 | -8.615850e-47 |
| Msa0765020 | Msa1132320 | 0.836449 | 9.299287e-57 | -8.615850e-47 |
| Msa0765020 | Msa1161520 | 0.809220 | 2.107698e-50 | -8.615850e-47 |
| Msa0765020 | Msa1166450 | 0.880483 | 5.290324e-70 | -8.615850e-47 |
| Msa0765020 | Msa1175590 | 0.806489 | 8.025161e-50 | -8.615850e-47 |
| Msa0765020 | Msa1182400 | 0.807063 | 6.069930e-50 | -8.615850e-47 |
| Msa0765020 | Msa1188380 | 0.871515 | 6.443120e-67 | -8.615850e-47 |
| Msa0765020 | Msa1188820 | 0.812070 | 5.099984e-51 | -8.615850e-47 |
| Msa0765020 | Msa1199750 | 0.806999 | 6.261857e-50 | -8.615850e-47 |
| Msa0765020 | Msa1208250 | 0.815317 | 9.834119e-52 | -8.615850e-47 |
| Msa0765020 | Msa1216700 | 0.820695 | 5.988436e-53 | -8.615850e-47 |
| Msa0765020 | Msa1216900 | 0.813381 | 2.634052e-51 | -8.615850e-47 |
| Msa0765020 | Msa1224690 | 0.854083 | 1.558241e-61 | -8.615850e-47 |
| Msa0765020 | Msa1230190 | 0.805227 | 1.478099e-49 | -8.615850e-47 |
| Msa0765020 | Msa1231520 | 0.818911 | 1.531131e-52 | -8.615850e-47 |
| Msa0765020 | Msa1235760 | 0.819645 | 1.041738e-52 | -8.615850e-47 |
| Msa0765020 | Msa1235770 | 0.838169 | 3.373307e-57 | -8.615850e-47 |
| Msa0765020 | Msa1242430 | 0.867696 | 1.131619e-65 | -8.615850e-47 |
| Msa0765020 | Msa1242990 | 0.839977 | 1.146973e-57 | -8.615850e-47 |
| Msa0765020 | Msa1254470 | 0.814136 | 1.796430e-51 | -8.615850e-47 |
| Msa0765020 | Msa1263610 | 0.837514 | 4.970943e-57 | -8.615850e-47 |
| Msa0765020 | Msa1266720 | 0.849580 | 2.952109e-60 | -8.615850e-47 |
| Msa0765020 | Msa1274310 | 0.800629 | 1.317897e-48 | -8.615850e-47 |
| Msa0765020 | Msa1284390 | 0.810937 | 8.992808e-51 | -8.615850e-47 |
| Msa0765020 | Msa1294520 | 0.816810 | 4.563360e-52 | -8.615850e-47 |
| Msa0765020 | Msa1302920 | 0.810512 | 1.110998e-50 | -8.615850e-47 |
| Msa0765020 | Msa1306700 | 0.800628 | 1.318184e-48 | -8.615850e-47 |
| Msa0765020 | Msa1319440 | 0.823888 | 1.086546e-53 | -8.615850e-47 |
| Msa0765020 | Msa1323920 | 0.812974 | 3.236190e-51 | -8.615850e-47 |
| Msa0765020 | Msa1328600 | 0.812037 | 5.187072e-51 | -8.615850e-47 |
| Msa0765020 | Msa1331730 | 0.818191 | 2.230008e-52 | -8.615850e-47 |
| Msa0765020 | Msa1333430 | 0.829249 | 5.720018e-55 | -8.615850e-47 |
| Msa0765020 | Msa1346540 | 0.802420 | 5.657991e-49 | -8.615850e-47 |
| Msa0765020 | Msa1351560 | 0.811132 | 8.156775e-51 | -8.615850e-47 |
| Msa0765020 | Msa1357380 | 0.819786 | 9.674055e-53 | -8.615850e-47 |
| Msa0765020 | Msa1357720 | 0.866563 | 2.601875e-65 | -8.615850e-47 |
| Msa0765020 | Msa1366700 | 0.808226 | 3.437312e-50 | -8.615850e-47 |
| Msa0765020 | Msa1368660 | 0.805009 | 1.641756e-49 | -8.615850e-47 |
| Msa0765020 | Msa1385940 | 0.809963 | 1.459393e-50 | -8.615850e-47 |
| Msa0765020 | Msa1400600 | 0.809910 | 1.498359e-50 | -8.615850e-47 |
| Msa0765020 | Msa1405470 | 0.835679 | 1.458098e-56 | -8.615850e-47 |
| Msa0765020 | Msa1407200 | 0.866669 | 2.407294e-65 | -8.615850e-47 |
| Msa0765020 | Msa1409050 | 0.871734 | 5.452856e-67 | -8.615850e-47 |
| Msa0765020 | Msa1409760 | 0.872202 | 3.811634e-67 | -8.615850e-47 |
| Msa0765020 | Msa1414830 | 0.800251 | 1.573198e-48 | -8.615850e-47 |
| Msa0765020 | Msa1415120 | 0.803528 | 3.339386e-49 | -8.615850e-47 |
| Msa0765020 | Msa1432250 | 0.807397 | 5.156173e-50 | -8.615850e-47 |
| Msa0765020 | Msa1433380 | 0.853230 | 2.741636e-61 | -8.615850e-47 |
| Msa0765020 | Msa1439160 | 0.803154 | 3.991237e-49 | -8.615850e-47 |
| Msa0765020 | Msa1459630 | 0.821944 | 3.083446e-53 | -8.615850e-47 |
| Msa0133670 | Msa0765020 | 0.830494 | 2.846316e-55 | -8.615850e-47 |
| Msa0133880 | Msa0765020 | 0.837226 | 5.889380e-57 | -8.615850e-47 |
| Msa0166580 | Msa0765020 | 0.830124 | 3.503636e-55 | -8.615850e-47 |
| Msa0169960 | Msa0765020 | 0.802093 | 6.606990e-49 | -8.615850e-47 |
| Msa0175480 | Msa0765020 | 0.855439 | 6.302535e-62 | -8.615850e-47 |
| Msa0181290 | Msa0765020 | 0.815529 | 8.823637e-52 | -8.615850e-47 |
| Msa0184030 | Msa0765020 | 0.825296 | 5.064367e-54 | -8.615850e-47 |
| Msa0184120 | Msa0765020 | 0.831810 | 1.351756e-55 | -8.615850e-47 |
| Msa0207530 | Msa0765020 | 0.812668 | 3.776050e-51 | -8.615850e-47 |
| Msa0207900 | Msa0765020 | 0.824871 | 6.382079e-54 | -8.615850e-47 |
| Msa0213090 | Msa0765020 | 0.811487 | 6.832161e-51 | -8.615850e-47 |
| Msa0216560 | Msa0765020 | 0.825527 | 4.464944e-54 | -8.615850e-47 |
| Msa0218480 | Msa0765020 | 0.806361 | 8.537186e-50 | -8.615850e-47 |
| Msa0218590 | Msa0765020 | 0.810812 | 9.568434e-51 | -8.615850e-47 |
| Msa0221940 | Msa0765020 | 0.800732 | 1.255641e-48 | -8.615850e-47 |
| Msa0222720 | Msa0765020 | 0.842381 | 2.677192e-58 | -8.615850e-47 |
| Msa0225370 | Msa0765020 | 0.806512 | 7.934787e-50 | -8.615850e-47 |
| Msa0369750 | Msa0765020 | 0.819284 | 1.258991e-52 | -8.615850e-47 |
| Msa0372990 | Msa0765020 | 0.800006 | 1.764329e-48 | -8.615850e-47 |
| Msa0379720 | Msa0765020 | 0.803686 | 3.096473e-49 | -8.615850e-47 |
| Msa0388140 | Msa0765020 | 0.803741 | 3.015638e-49 | -8.615850e-47 |
| Msa0389830 | Msa0765020 | 0.802298 | 5.996393e-49 | -8.615850e-47 |
| Msa0419050 | Msa0765020 | 0.810787 | 9.686702e-51 | -8.615850e-47 |
| Msa0421390 | Msa0765020 | 0.807057 | 6.088169e-50 | -8.615850e-47 |
| Msa0427050 | Msa0765020 | 0.806068 | 9.841639e-50 | -8.615850e-47 |
| Msa0429100 | Msa0765020 | 0.802713 | 4.922954e-49 | -8.615850e-47 |
| Msa0429130 | Msa0765020 | 0.818660 | 1.745231e-52 | -8.615850e-47 |
| Msa0431940 | Msa0765020 | 0.810650 | 1.037351e-50 | -8.615850e-47 |
| Msa0448400 | Msa0765020 | 0.818237 | 2.176502e-52 | -8.615850e-47 |
| Msa0463960 | Msa0765020 | 0.809605 | 1.742518e-50 | -8.615850e-47 |
| Msa0473450 | Msa0765020 | 0.804085 | 2.557993e-49 | -8.615850e-47 |
| Msa0256170 | Msa0765020 | 0.837613 | 4.687534e-57 | -8.615850e-47 |
| Msa0256430 | Msa0765020 | 0.826037 | 3.378628e-54 | -8.615850e-47 |
| Msa0264020 | Msa0765020 | 0.837926 | 3.894903e-57 | -8.615850e-47 |
| Msa0266380 | Msa0765020 | 0.830858 | 2.317247e-55 | -8.615850e-47 |
| Msa0270610 | Msa0765020 | 0.814975 | 1.171813e-51 | -8.615850e-47 |
| Msa0273230 | Msa0765020 | 0.804973 | 1.669986e-49 | -8.615850e-47 |
| Msa0288320 | Msa0765020 | 0.811238 | 7.738690e-51 | -8.615850e-47 |
| Msa0295840 | Msa0765020 | 0.828119 | 1.073499e-54 | -8.615850e-47 |
| Msa0330400 | Msa0765020 | 0.807374 | 5.215818e-50 | -8.615850e-47 |
| Msa0334180 | Msa0765020 | 0.835148 | 1.986460e-56 | -8.615850e-47 |
| Msa0341860 | Msa0765020 | 0.819760 | 9.806638e-53 | -8.615850e-47 |
| Msa0486870 | Msa0765020 | 0.805368 | 1.380602e-49 | -8.615850e-47 |
| Msa0509510 | Msa0765020 | 0.828475 | 8.805151e-55 | -8.615850e-47 |
| Msa0510560 | Msa0765020 | 0.802979 | 4.337507e-49 | -8.615850e-47 |
| Msa0520810 | Msa0765020 | 0.813504 | 2.475737e-51 | -8.615850e-47 |
| Msa0521100 | Msa0765020 | 0.834005 | 3.847962e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765020 | MtrunA17_Chr5g0415741 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 2.88e-91 | 259 |
| Msa0765020 | MtrunA17_Chr5g0415771 | 66.667 | 126 | 41 | 1 | 1 | 125 | 1 | 126 | 3.10e-52 | 160 |
| Msa0765020 | MtrunA17_Chr5g0415761 | 64.844 | 128 | 43 | 1 | 1 | 126 | 1 | 128 | 4.89e-51 | 158 |
| Msa0765020 | MtrunA17_Chr7g0216481 | 54.717 | 106 | 48 | 0 | 20 | 125 | 28 | 133 | 8.24e-43 | 137 |
| Msa0765020 | MtrunA17_Chr3g0142051 | 46.847 | 111 | 59 | 0 | 14 | 124 | 2 | 112 | 2.56e-36 | 120 |
| Msa0765020 | MtrunA17_Chr1g0155721 | 40.708 | 113 | 67 | 0 | 14 | 126 | 2 | 114 | 2.19e-33 | 113 |
| Msa0765020 | MtrunA17_Chr5g0404831 | 42.342 | 111 | 64 | 0 | 14 | 124 | 4 | 114 | 3.65e-33 | 112 |
| Msa0765020 | MtrunA17_Chr8g0393201 | 41.346 | 104 | 61 | 0 | 18 | 121 | 227 | 330 | 2.20e-24 | 95.1 |
| Msa0765020 | MtrunA17_Chr8g0334481 | 32.381 | 105 | 71 | 0 | 17 | 121 | 25 | 129 | 2.38e-22 | 85.5 |
| Msa0765020 | MtrunA17_Chr7g0245141 | 34.286 | 105 | 69 | 0 | 17 | 121 | 23 | 127 | 2.74e-22 | 85.5 |
| Msa0765020 | MtrunA17_Chr2g0280411 | 37.143 | 105 | 66 | 0 | 18 | 122 | 9 | 113 | 7.44e-22 | 84.0 |
| Msa0765020 | MtrunA17_Chr4g0042051 | 35.514 | 107 | 65 | 2 | 18 | 122 | 10 | 114 | 6.43e-20 | 79.0 |
| Msa0765020 | MtrunA17_Chr2g0319291 | 30.476 | 105 | 73 | 0 | 18 | 122 | 10 | 114 | 1.44e-18 | 75.5 |
| Msa0765020 | MtrunA17_Chr1g0201781 | 32.222 | 90 | 59 | 2 | 39 | 126 | 77 | 166 | 1.19e-14 | 66.6 |
| Msa0765020 | MtrunA17_Chr7g0249461 | 36.364 | 88 | 55 | 1 | 40 | 126 | 98 | 185 | 4.25e-14 | 65.5 |
| Msa0765020 | MtrunA17_Chr8g0360031 | 34.091 | 88 | 56 | 2 | 38 | 123 | 87 | 174 | 4.41e-14 | 65.1 |
| Msa0765020 | MtrunA17_Chr4g0052481 | 32.927 | 82 | 53 | 1 | 44 | 123 | 85 | 166 | 9.30e-14 | 64.3 |
| Msa0765020 | MtrunA17_Chr3g0125821 | 31.313 | 99 | 63 | 3 | 27 | 123 | 76 | 171 | 9.57e-14 | 64.3 |
| Msa0765020 | MtrunA17_Chr2g0317731 | 34.091 | 88 | 56 | 2 | 38 | 123 | 84 | 171 | 3.11e-13 | 62.8 |
| Msa0765020 | MtrunA17_Chr1g0211871 | 32.911 | 79 | 49 | 2 | 38 | 115 | 84 | 159 | 3.43e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765020 | AT5G39950.1 | 46.847 | 111 | 59 | 0 | 15 | 125 | 22 | 132 | 6.66e-41 | 132 |
| Msa0765020 | AT1G69880.1 | 46.729 | 107 | 57 | 0 | 17 | 123 | 36 | 142 | 8.73e-35 | 117 |
| Msa0765020 | AT1G59730.1 | 39.844 | 128 | 74 | 1 | 1 | 125 | 1 | 128 | 9.59e-34 | 114 |
| Msa0765020 | AT3G51030.1 | 40.909 | 110 | 65 | 0 | 14 | 123 | 2 | 111 | 4.33e-32 | 110 |
| Msa0765020 | AT1G19730.1 | 45.536 | 112 | 60 | 1 | 14 | 124 | 2 | 113 | 1.49e-31 | 108 |
| Msa0765020 | AT1G45145.1 | 42.056 | 107 | 62 | 0 | 18 | 124 | 5 | 111 | 3.46e-30 | 105 |
| Msa0765020 | AT5G42980.1 | 41.818 | 110 | 64 | 0 | 17 | 126 | 4 | 113 | 9.04e-30 | 104 |
| Msa0765020 | AT3G17880.2 | 39.806 | 103 | 62 | 0 | 19 | 121 | 264 | 366 | 4.31e-22 | 89.7 |
| Msa0765020 | AT3G17880.1 | 39.806 | 103 | 62 | 0 | 19 | 121 | 271 | 373 | 5.20e-22 | 89.7 |
| Msa0765020 | AT3G56420.1 | 35.870 | 92 | 59 | 0 | 28 | 119 | 50 | 141 | 3.54e-20 | 80.9 |
| Msa0765020 | AT3G56420.2 | 35.870 | 92 | 59 | 0 | 28 | 119 | 50 | 141 | 3.54e-20 | 80.9 |
| Msa0765020 | AT3G56420.3 | 35.870 | 92 | 59 | 0 | 28 | 119 | 50 | 141 | 3.54e-20 | 80.9 |
| Msa0765020 | AT3G08710.2 | 31.532 | 111 | 74 | 1 | 11 | 121 | 18 | 126 | 1.94e-19 | 78.6 |
| Msa0765020 | AT3G08710.3 | 31.532 | 111 | 74 | 1 | 11 | 121 | 18 | 126 | 1.94e-19 | 78.6 |
| Msa0765020 | AT3G08710.1 | 31.532 | 111 | 74 | 1 | 11 | 121 | 18 | 126 | 1.94e-19 | 78.6 |
| Msa0765020 | AT1G11530.1 | 32.381 | 105 | 71 | 0 | 18 | 122 | 2 | 106 | 8.64e-18 | 73.6 |
| Msa0765020 | AT2G40790.2 | 33.696 | 92 | 61 | 0 | 28 | 119 | 50 | 141 | 3.70e-16 | 70.5 |
| Msa0765020 | AT2G40790.1 | 33.696 | 92 | 61 | 0 | 28 | 119 | 50 | 141 | 3.70e-16 | 70.5 |
| Msa0765020 | AT1G43560.1 | 28.906 | 128 | 85 | 4 | 1 | 122 | 33 | 160 | 1.46e-15 | 69.3 |
| Msa0765020 | AT5G16400.1 | 37.500 | 88 | 54 | 1 | 40 | 126 | 97 | 184 | 2.23e-15 | 68.9 |
| Msa0765020 | AT3G02730.1 | 39.080 | 87 | 52 | 1 | 41 | 126 | 88 | 174 | 4.12e-15 | 68.2 |
| Msa0765020 | AT4G03520.1 | 38.554 | 83 | 49 | 2 | 43 | 123 | 101 | 183 | 8.80e-15 | 67.4 |
| Msa0765020 | AT1G03680.1 | 38.272 | 81 | 48 | 2 | 45 | 123 | 97 | 177 | 2.03e-14 | 66.6 |
| Msa0765020 | AT1G31020.1 | 30.833 | 120 | 77 | 2 | 6 | 123 | 41 | 156 | 3.94e-14 | 65.1 |
| Msa0765020 | AT1G76760.1 | 28.421 | 95 | 61 | 3 | 33 | 120 | 70 | 164 | 9.32e-14 | 64.7 |
| Msa0765020 | AT2G35010.2 | 36.250 | 80 | 47 | 2 | 47 | 123 | 113 | 191 | 9.57e-13 | 62.4 |
| Msa0765020 | AT2G35010.1 | 36.250 | 80 | 47 | 2 | 47 | 123 | 113 | 191 | 9.57e-13 | 62.4 |
| Msa0765020 | AT1G50320.1 | 36.709 | 79 | 46 | 2 | 38 | 115 | 85 | 160 | 3.04e-12 | 60.8 |
| Msa0765020 | AT1G52990.1 | 31.868 | 91 | 60 | 2 | 34 | 123 | 222 | 311 | 2.07e-11 | 59.7 |
Find 31 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCATTCCACTGCTAAA+TGG | 0.238150 | 5_2:-25505359 | Msa0765020:CDS |
| AATCAATAAACTAATATAAT+TGG | 0.246269 | 5_2:-25504536 | None:intergenic |
| GCAGCAAAATCTTTCATAAC+TGG | 0.263663 | 5_2:+25505157 | None:intergenic |
| GCTTGATGTTGATGAGTTAT+TGG | 0.264813 | 5_2:-25505107 | Msa0765020:intron |
| TTATTGATTTCACAGCTAAA+TGG | 0.322109 | 5_2:-25505204 | Msa0765020:CDS |
| CTCATTCTTCTTTGATTACA+AGG | 0.356202 | 5_2:-25504716 | Msa0765020:three_prime_UTR |
| TGTTAATTTGTTGGGATGAT+TGG | 0.356739 | 5_2:+25505525 | None:intergenic |
| TTGTTGGGATGATTGGAAAT+TGG | 0.378161 | 5_2:+25505532 | None:intergenic |
| TATGATGTTTGTTAATTTGT+TGG | 0.397122 | 5_2:+25505516 | None:intergenic |
| TTCTTAATGAGTAGAAAAGT+TGG | 0.438267 | 5_2:+25504856 | None:intergenic |
| ATGATGTTTGTTAATTTGTT+GGG | 0.449780 | 5_2:+25505517 | None:intergenic |
| GGGATGATTGGAAATTGGTT+GGG | 0.476532 | 5_2:+25505537 | None:intergenic |
| AGGAAAAGTTGTTGATAAAG+TGG | 0.478902 | 5_2:-25504833 | Msa0765020:CDS |
| TAAAGTGGTGGGAGTAAGAA+AGG | 0.479129 | 5_2:-25504818 | Msa0765020:CDS |
| GGGAGTTTCTCAAACATTCC+AGG | 0.482800 | 5_2:-25504890 | Msa0765020:CDS |
| TGGGATGATTGGAAATTGGT+TGG | 0.482987 | 5_2:+25505536 | None:intergenic |
| GTGTGGACCTTGCAAAGTTA+TGG | 0.487071 | 5_2:-25505182 | Msa0765020:CDS |
| TAGCAGTGGAATGGAATGTA+AGG | 0.498154 | 5_2:+25505364 | None:intergenic |
| ATACACAAAATTATACAAGT+TGG | 0.527315 | 5_2:+25505416 | None:intergenic |
| CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5_2:+25505355 | None:intergenic |
| GGGATATATATAGTGTAGAA+AGG | 0.532837 | 5_2:+25505557 | None:intergenic |
| TGGAATGGAATGTAAGGACA+TGG | 0.568326 | 5_2:+25505370 | None:intergenic |
| AAAAGTTGTTGATAAAGTGG+TGG | 0.577415 | 5_2:-25504830 | Msa0765020:CDS |
| AAGTTGGCAATGAATGCACC+TGG | 0.579245 | 5_2:+25504872 | None:intergenic |
| GATTTCACAGCTAAATGGTG+TGG | 0.590907 | 5_2:-25505199 | Msa0765020:CDS |
| TCATTCTTCTTTGATTACAA+GGG | 0.593689 | 5_2:-25504715 | Msa0765020:three_prime_UTR |
| AAAGTTGTTGATAAAGTGGT+GGG | 0.597105 | 5_2:-25504829 | Msa0765020:CDS |
| ACTGGATCCATAACTTTGCA+AGG | 0.602265 | 5_2:+25505175 | None:intergenic |
| ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5_2:+25505350 | None:intergenic |
| TAAGAAAGGAGCAACTACAA+AGG | 0.660815 | 5_2:-25504804 | Msa0765020:CDS |
| GGAATGGAATGTAAGGACAT+GGG | 0.736550 | 5_2:+25505371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAGCATTTATAAT+AGG | + | chr5_2:25505122-25505141 | None:intergenic | 10.0% |
| !! | AAAATAATAGCATTTATAAT+AGG | + | chr5_2:25505122-25505141 | None:intergenic | 10.0% |
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_2:25504775-25504794 | Msa0765020:exon | 15.0% |
| !! | ACTCAAAAAATAGAAAATAT+AGG | - | chr5_2:25505448-25505467 | Msa0765020:five_prime_UTR | 15.0% |
| !!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5_2:25504775-25504794 | Msa0765020:exon | 15.0% |
| !! | ACTCAAAAAATAGAAAATAT+AGG | - | chr5_2:25505448-25505467 | Msa0765020:five_prime_UTR | 15.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_2:25504580-25504599 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_2:25504581-25504600 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_2:25504681-25504700 | None:intergenic | 20.0% |
| !!! | TCTTATGTAGTATTTTTCTT+TGG | - | chr5_2:25504858-25504877 | Msa0765020:CDS | 20.0% |
| !!! | TGTTTTTTCCACAATATAAA+TGG | - | chr5_2:25505176-25505195 | Msa0765020:CDS | 20.0% |
| !!! | TCATTCTTTTATCATTAAAG+AGG | - | chr5_2:25505473-25505492 | Msa0765020:five_prime_UTR | 20.0% |
| !!! | ATGATGTTTGTTAATTTGTT+GGG | + | chr5_2:25504580-25504599 | None:intergenic | 20.0% |
| !!! | TATGATGTTTGTTAATTTGT+TGG | + | chr5_2:25504581-25504600 | None:intergenic | 20.0% |
| !! | ATACACAAAATTATACAAGT+TGG | + | chr5_2:25504681-25504700 | None:intergenic | 20.0% |
| !!! | TCTTATGTAGTATTTTTCTT+TGG | - | chr5_2:25504858-25504877 | Msa0765020:CDS | 20.0% |
| !!! | TGTTTTTTCCACAATATAAA+TGG | - | chr5_2:25505176-25505195 | Msa0765020:CDS | 20.0% |
| !!! | TCATTCTTTTATCATTAAAG+AGG | - | chr5_2:25505473-25505492 | Msa0765020:five_prime_UTR | 20.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_2:25504627-25504646 | Msa0765020:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_2:25504636-25504655 | None:intergenic | 25.0% |
| !! | GTATTTTTCTTTGGTATAGA+TGG | - | chr5_2:25504867-25504886 | Msa0765020:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_2:25504890-25504909 | Msa0765020:CDS | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_2:25505028-25505047 | None:intergenic | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_2:25505241-25505260 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_2:25505241-25505260 | Msa0765020:intron | 25.0% |
| ! | TCATTCTTCTTTGATTACAA+GGG | - | chr5_2:25505379-25505398 | Msa0765020:CDS | 25.0% |
| !!! | CATACACCTAAATCATTTTT+TGG | - | chr5_2:25504627-25504646 | Msa0765020:three_prime_UTR | 25.0% |
| ! | GATGAACCAAAAAATGATTT+AGG | + | chr5_2:25504636-25504655 | None:intergenic | 25.0% |
| !! | GTATTTTTCTTTGGTATAGA+TGG | - | chr5_2:25504867-25504886 | Msa0765020:CDS | 25.0% |
| !!! | TTATTGATTTCACAGCTAAA+TGG | - | chr5_2:25504890-25504909 | Msa0765020:CDS | 25.0% |
| ! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5_2:25505028-25505047 | None:intergenic | 25.0% |
| ! | TTCTTAATGAGTAGAAAAGT+TGG | + | chr5_2:25505241-25505260 | None:intergenic | 25.0% |
| !! | ACTTTTCTACTCATTAAGAA+AGG | - | chr5_2:25505241-25505260 | Msa0765020:intron | 25.0% |
| ! | TCATTCTTCTTTGATTACAA+GGG | - | chr5_2:25505379-25505398 | Msa0765020:CDS | 25.0% |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_2:25504540-25504559 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_2:25504572-25504591 | None:intergenic | 30.0% |
| AATTAAACCTGGCATAAAGT+TGG | + | chr5_2:25505062-25505081 | None:intergenic | 30.0% | |
| ! | AGGAAAAGTTGTTGATAAAG+TGG | - | chr5_2:25505261-25505280 | Msa0765020:intron | 30.0% |
| ! | AAAAGTTGTTGATAAAGTGG+TGG | - | chr5_2:25505264-25505283 | Msa0765020:intron | 30.0% |
| ! | AAAGTTGTTGATAAAGTGGT+GGG | - | chr5_2:25505265-25505284 | Msa0765020:intron | 30.0% |
| CTCATTCTTCTTTGATTACA+AGG | - | chr5_2:25505378-25505397 | Msa0765020:CDS | 30.0% | |
| GGGATATATATAGTGTAGAA+AGG | + | chr5_2:25504540-25504559 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTTGGGATGAT+TGG | + | chr5_2:25504572-25504591 | None:intergenic | 30.0% |
| AATTAAACCTGGCATAAAGT+TGG | + | chr5_2:25505062-25505081 | None:intergenic | 30.0% | |
| ! | AGGAAAAGTTGTTGATAAAG+TGG | - | chr5_2:25505261-25505280 | Msa0765020:intron | 30.0% |
| ! | AAAAGTTGTTGATAAAGTGG+TGG | - | chr5_2:25505264-25505283 | Msa0765020:intron | 30.0% |
| ! | AAAGTTGTTGATAAAGTGGT+GGG | - | chr5_2:25505265-25505284 | Msa0765020:intron | 30.0% |
| CTCATTCTTCTTTGATTACA+AGG | - | chr5_2:25505378-25505397 | Msa0765020:CDS | 30.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_2:25504565-25504584 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_2:25504940-25504959 | None:intergenic | 35.0% | |
| ! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_2:25504987-25505006 | Msa0765020:intron | 35.0% |
| TGTAAAACCAACTTTATGCC+AGG | - | chr5_2:25505052-25505071 | Msa0765020:intron | 35.0% | |
| ACCAACTGAGTAATTAAACC+TGG | + | chr5_2:25505073-25505092 | None:intergenic | 35.0% | |
| TCCACAATATAAATGGCAAC+AGG | - | chr5_2:25505183-25505202 | Msa0765020:CDS | 35.0% | |
| CCACAATATAAATGGCAACA+GGG | - | chr5_2:25505184-25505203 | Msa0765020:CDS | 35.0% | |
| TAAGAAAGGAGCAACTACAA+AGG | - | chr5_2:25505290-25505309 | Msa0765020:intron | 35.0% | |
| TTGTTGGGATGATTGGAAAT+TGG | + | chr5_2:25504565-25504584 | None:intergenic | 35.0% | |
| GCAGCAAAATCTTTCATAAC+TGG | + | chr5_2:25504940-25504959 | None:intergenic | 35.0% | |
| ! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5_2:25504987-25505006 | Msa0765020:intron | 35.0% |
| TGTAAAACCAACTTTATGCC+AGG | - | chr5_2:25505052-25505071 | Msa0765020:intron | 35.0% | |
| ACCAACTGAGTAATTAAACC+TGG | + | chr5_2:25505073-25505092 | None:intergenic | 35.0% | |
| TCCACAATATAAATGGCAAC+AGG | - | chr5_2:25505183-25505202 | Msa0765020:CDS | 35.0% | |
| CCACAATATAAATGGCAACA+GGG | - | chr5_2:25505184-25505203 | Msa0765020:CDS | 35.0% | |
| TAAGAAAGGAGCAACTACAA+AGG | - | chr5_2:25505290-25505309 | Msa0765020:intron | 35.0% | |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_2:25504560-25504579 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_2:25504561-25504580 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_2:25504726-25504745 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_2:25504727-25504746 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_2:25504733-25504752 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_2:25504735-25504754 | Msa0765020:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_2:25504742-25504761 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_2:25504747-25504766 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_2:25504895-25504914 | Msa0765020:intron | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_2:25504922-25504941 | None:intergenic | 40.0% | |
| GCCAGGTTTAATTACTCAGT+TGG | - | chr5_2:25505069-25505088 | Msa0765020:intron | 40.0% | |
| ! | CCCTGTTGCCATTTATATTG+TGG | + | chr5_2:25505187-25505206 | None:intergenic | 40.0% |
| ! | TAAAGTGGTGGGAGTAAGAA+AGG | - | chr5_2:25505276-25505295 | Msa0765020:intron | 40.0% |
| GGGATGATTGGAAATTGGTT+GGG | + | chr5_2:25504560-25504579 | None:intergenic | 40.0% | |
| TGGGATGATTGGAAATTGGT+TGG | + | chr5_2:25504561-25504580 | None:intergenic | 40.0% | |
| GGAATGGAATGTAAGGACAT+GGG | + | chr5_2:25504726-25504745 | None:intergenic | 40.0% | |
| TGGAATGGAATGTAAGGACA+TGG | + | chr5_2:25504727-25504746 | None:intergenic | 40.0% | |
| TAGCAGTGGAATGGAATGTA+AGG | + | chr5_2:25504733-25504752 | None:intergenic | 40.0% | |
| CATTCCATTCCACTGCTAAA+TGG | - | chr5_2:25504735-25504754 | Msa0765020:three_prime_UTR | 40.0% | |
| CATTCCATTTAGCAGTGGAA+TGG | + | chr5_2:25504742-25504761 | None:intergenic | 40.0% | |
| ATGAGCATTCCATTTAGCAG+TGG | + | chr5_2:25504747-25504766 | None:intergenic | 40.0% | |
| GATTTCACAGCTAAATGGTG+TGG | - | chr5_2:25504895-25504914 | Msa0765020:intron | 40.0% | |
| ACTGGATCCATAACTTTGCA+AGG | + | chr5_2:25504922-25504941 | None:intergenic | 40.0% | |
| GCCAGGTTTAATTACTCAGT+TGG | - | chr5_2:25505069-25505088 | Msa0765020:intron | 40.0% | |
| ! | CCCTGTTGCCATTTATATTG+TGG | + | chr5_2:25505187-25505206 | None:intergenic | 40.0% |
| ! | TAAAGTGGTGGGAGTAAGAA+AGG | - | chr5_2:25505276-25505295 | Msa0765020:intron | 40.0% |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_2:25504912-25504931 | Msa0765020:intron | 45.0% | |
| GGGAGTTTCTCAAACATTCC+AGG | - | chr5_2:25505204-25505223 | Msa0765020:CDS | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_2:25505225-25505244 | None:intergenic | 45.0% | |
| GTGTGGACCTTGCAAAGTTA+TGG | - | chr5_2:25504912-25504931 | Msa0765020:intron | 45.0% | |
| GGGAGTTTCTCAAACATTCC+AGG | - | chr5_2:25505204-25505223 | Msa0765020:CDS | 45.0% | |
| AAGTTGGCAATGAATGCACC+TGG | + | chr5_2:25505225-25505244 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25504537 | 25505579 | 25504537 | ID=Msa0765020;Name=Msa0765020 |
| chr5_2 | mRNA | 25504537 | 25505579 | 25504537 | ID=Msa0765020-mRNA-1;Parent=Msa0765020;Name=Msa0765020-mRNA-1;_AED=0.35;_eAED=0.35;_QI=134|1|1|1|1|1|3|243|126 |
| chr5_2 | exon | 25504537 | 25504911 | 25504537 | ID=Msa0765020-mRNA-1:exon:10293;Parent=Msa0765020-mRNA-1 |
| chr5_2 | exon | 25505108 | 25505230 | 25505108 | ID=Msa0765020-mRNA-1:exon:10292;Parent=Msa0765020-mRNA-1 |
| chr5_2 | exon | 25505320 | 25505579 | 25505320 | ID=Msa0765020-mRNA-1:exon:10291;Parent=Msa0765020-mRNA-1 |
| chr5_2 | five_prime_UTR | 25505446 | 25505579 | 25505446 | ID=Msa0765020-mRNA-1:five_prime_utr;Parent=Msa0765020-mRNA-1 |
| chr5_2 | CDS | 25505320 | 25505445 | 25505320 | ID=Msa0765020-mRNA-1:cds;Parent=Msa0765020-mRNA-1 |
| chr5_2 | CDS | 25505108 | 25505230 | 25505108 | ID=Msa0765020-mRNA-1:cds;Parent=Msa0765020-mRNA-1 |
| chr5_2 | CDS | 25504780 | 25504911 | 25504780 | ID=Msa0765020-mRNA-1:cds;Parent=Msa0765020-mRNA-1 |
| chr5_2 | three_prime_UTR | 25504537 | 25504779 | 25504537 | ID=Msa0765020-mRNA-1:three_prime_utr;Parent=Msa0765020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
