Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760040 | XP_003612507.1 | 93.681 | 364 | 22 | 1 | 1 | 364 | 1 | 363 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760040 | G7K433 | 93.681 | 364 | 22 | 1 | 1 | 364 | 1 | 363 | 0.0 | 670 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0760040 | 0.808845 | 2.535050e-50 | -8.615850e-47 |
| Msa0030310 | Msa0760040 | 0.810536 | 1.097996e-50 | -8.615850e-47 |
| Msa0642650 | Msa0760040 | 0.815246 | 1.019885e-51 | -8.615850e-47 |
| Msa0725920 | Msa0760040 | 0.803801 | 2.930576e-49 | -8.615850e-47 |
| Msa0760040 | Msa0846030 | 0.808412 | 3.137359e-50 | -8.615850e-47 |
| Msa0760040 | Msa0958020 | 0.806315 | 8.733226e-50 | -8.615850e-47 |
| Msa0760040 | Msa0990520 | 0.805033 | 1.622989e-49 | -8.615850e-47 |
| Msa0760040 | Msa1103670 | 0.805249 | 1.462352e-49 | -8.615850e-47 |
| Msa0760040 | Msa1365870 | 0.807789 | 4.256653e-50 | -8.615850e-47 |
| Msa0760040 | Msa1373510 | 0.819002 | 1.459969e-52 | -8.615850e-47 |
| Msa0760040 | Msa1382310 | 0.811688 | 6.176265e-51 | -8.615850e-47 |
| Msa0141830 | Msa0760040 | 0.807088 | 5.996989e-50 | -8.615850e-47 |
| Msa0143080 | Msa0760040 | 0.800577 | 1.350286e-48 | -8.615850e-47 |
| Msa0194970 | Msa0760040 | 0.808941 | 2.417567e-50 | -8.615850e-47 |
| Msa0417630 | Msa0760040 | 0.801545 | 8.559109e-49 | -8.615850e-47 |
| Msa0339860 | Msa0760040 | 0.801077 | 1.067386e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760040 | MtrunA17_Chr5g0408321 | 93.681 | 364 | 22 | 1 | 1 | 364 | 1 | 363 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760040 | AT5G45310.2 | 39.344 | 366 | 182 | 6 | 2 | 361 | 5 | 336 | 3.37e-75 | 236 |
| Msa0760040 | AT5G45310.1 | 39.344 | 366 | 182 | 6 | 2 | 361 | 5 | 336 | 3.37e-75 | 236 |
Find 75 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATGCACAAAGATATT+TGG | 0.105701 | 5_2:-16230196 | Msa0760040:CDS |
| GGCACTAATTTCTGAGCTTT+TGG | 0.241486 | 5_2:-16231774 | Msa0760040:CDS |
| AGCTTCAACTGGTTCATTCT+TGG | 0.285097 | 5_2:-16229837 | Msa0760040:CDS |
| TTTGGCTAGTGTAATGTTAT+TGG | 0.303475 | 5_2:-16231756 | Msa0760040:CDS |
| GGAATTATCTCATGGACAAT+AGG | 0.312535 | 5_2:-16231608 | Msa0760040:CDS |
| TGCTTGTTTCGTCAATCTTT+CGG | 0.314282 | 5_2:+16230288 | None:intergenic |
| ATGGCATTCACAGCTCTTAC+AGG | 0.314716 | 5_2:+16231572 | None:intergenic |
| TGCTTGTTTCCTATCAGAAT+TGG | 0.320352 | 5_2:-16231701 | Msa0760040:CDS |
| TTCAATGTGAACTTAGTATT+GGG | 0.342241 | 5_2:-16231629 | Msa0760040:CDS |
| CTTCAATGTGAACTTAGTAT+TGG | 0.364836 | 5_2:-16231630 | Msa0760040:CDS |
| TGCACTCTTTGACGGCCATT+TGG | 0.365602 | 5_2:+16230661 | None:intergenic |
| TCTGATGCACAAAGATATTT+GGG | 0.367940 | 5_2:-16230195 | Msa0760040:CDS |
| AAGGGCTTTCTCTATGCTTA+AGG | 0.373735 | 5_2:-16231729 | Msa0760040:CDS |
| GAATTATCTCATGGACAATA+GGG | 0.380019 | 5_2:-16231607 | Msa0760040:CDS |
| TTATAGTTGGAGTGACTGTC+TGG | 0.380085 | 5_2:-16229989 | Msa0760040:CDS |
| CGAAAATGAAGTTTCCCTTA+AGG | 0.380412 | 5_2:-16230222 | Msa0760040:CDS |
| AAATTCAAGGAAAGGGATAC+TGG | 0.384265 | 5_2:-16230340 | Msa0760040:CDS |
| GCAAAGAGAGCTACAATAAG+AGG | 0.394688 | 5_2:+16229945 | None:intergenic |
| GACCAAACCATGACACGGTT+TGG | 0.396411 | 5_2:-16229747 | Msa0760040:CDS |
| TTGCTTAAACTCTTGAAAAC+AGG | 0.398794 | 5_2:-16230146 | Msa0760040:CDS |
| GTGCATCAGAAGATCCTTAA+GGG | 0.404349 | 5_2:+16230208 | None:intergenic |
| ACACTTGGACAGAGTTGGTT+AGG | 0.406960 | 5_2:-16231664 | Msa0760040:CDS |
| ACTTGAAGAGGAACATGATA+TGG | 0.426330 | 5_2:-16230613 | Msa0760040:CDS |
| TGTGCATCAGAAGATCCTTA+AGG | 0.431231 | 5_2:+16230207 | None:intergenic |
| ATAACTAATCCAATTCTGAT+AGG | 0.432440 | 5_2:+16231692 | None:intergenic |
| CCTACCCTGCCATGGAAATC+CGG | 0.436412 | 5_2:-16230251 | Msa0760040:CDS |
| GTAGCTCTCTTTGCTGTAGT+AGG | 0.438064 | 5_2:-16229936 | Msa0760040:CDS |
| GACCAAACCGTGTCATGGTT+TGG | 0.448099 | 5_2:+16229745 | None:intergenic |
| ATCAGATAAACGAAAATGTT+CGG | 0.456435 | 5_2:-16230370 | Msa0760040:CDS |
| TGCCATTCAAAGGGAGAGAC+AGG | 0.479959 | 5_2:-16231555 | Msa0760040:intron |
| GTTCGGCTTAAAGAAATTCA+AGG | 0.484451 | 5_2:-16230353 | Msa0760040:CDS |
| CTTAAAGAAATTCAAGGAAA+GGG | 0.494237 | 5_2:-16230347 | Msa0760040:CDS |
| CCGAGATGGAGAATCTAGAA+TGG | 0.503025 | 5_2:-16230710 | Msa0760040:CDS |
| AGCTGTGAATGCCATTCAAA+GGG | 0.504731 | 5_2:-16231564 | Msa0760040:CDS |
| CTTGAAAACAGGACAAAAGT+TGG | 0.505012 | 5_2:-16230135 | Msa0760040:CDS |
| TATTTACACTTGGACAGAGT+TGG | 0.511630 | 5_2:-16231669 | Msa0760040:CDS |
| GGTTTAGCAGCAGAATTAGC+AGG | 0.514236 | 5_2:+16230110 | None:intergenic |
| GATTTCCATGGCAGGGTAGG+AGG | 0.514530 | 5_2:+16230254 | None:intergenic |
| ACCAAGGGTTGCACCTATGT+TGG | 0.517963 | 5_2:-16229793 | Msa0760040:CDS |
| TAGTATTGGGAATTATCTCA+TGG | 0.519402 | 5_2:-16231616 | Msa0760040:CDS |
| ACTTCAAGAACGGTTCCAAA+TGG | 0.525969 | 5_2:-16230676 | Msa0760040:CDS |
| CGTCAAAGAGTGCAAAATGA+TGG | 0.527375 | 5_2:-16230652 | Msa0760040:CDS |
| AGAGCAACTGCATCAGAAGC+AGG | 0.529915 | 5_2:+16229864 | None:intergenic |
| GCTTAAAGAAATTCAAGGAA+AGG | 0.534539 | 5_2:-16230348 | Msa0760040:CDS |
| GGTGCAACCCTTGGTAGAGT+AGG | 0.535547 | 5_2:+16229801 | None:intergenic |
| TTCCTCCTCCTACCCTGCCA+TGG | 0.536851 | 5_2:-16230259 | Msa0760040:CDS |
| AATTGAAAACTTAGAGGGAA+AGG | 0.537172 | 5_2:-16230580 | Msa0760040:intron |
| AACCTGTCTCTCCCTTTGAA+TGG | 0.538064 | 5_2:+16231553 | None:intergenic |
| CCGGATTTCCATGGCAGGGT+AGG | 0.538868 | 5_2:+16230251 | None:intergenic |
| GATTAGTTATTATTTACACT+TGG | 0.544163 | 5_2:-16231679 | Msa0760040:CDS |
| TTCCATGGCAGGGTAGGAGG+AGG | 0.544208 | 5_2:+16230257 | None:intergenic |
| GAGCTGTGAATGCCATTCAA+AGG | 0.544742 | 5_2:-16231565 | Msa0760040:CDS |
| CCATTCTAGATTCTCCATCT+CGG | 0.547457 | 5_2:+16230710 | None:intergenic |
| GCCAACATAGGTGCAACCCT+TGG | 0.553415 | 5_2:+16229792 | None:intergenic |
| TGTAACCGGATTTCCATGGC+AGG | 0.554763 | 5_2:+16230246 | None:intergenic |
| GCTACAATAAGAGGCATGCA+AGG | 0.561076 | 5_2:+16229954 | None:intergenic |
| GTGCAACCCTTGGTAGAGTA+GGG | 0.566951 | 5_2:+16229802 | None:intergenic |
| TTTCAAGAGTTTAAGCAACT+CGG | 0.570856 | 5_2:+16230151 | None:intergenic |
| GGCTTTCTCTATGCTTAAGG+AGG | 0.571686 | 5_2:-16231726 | Msa0760040:CDS |
| TCATCGAATGCAGACCGAGA+TGG | 0.575325 | 5_2:-16230724 | Msa0760040:CDS |
| AACCTACCCTACTCTACCAA+GGG | 0.583818 | 5_2:-16229808 | Msa0760040:CDS |
| GCTACTAGCAGAACTTGAAG+AGG | 0.585655 | 5_2:-16230625 | Msa0760040:CDS |
| ATTGCGAAATTGCAACATCT+CGG | 0.589655 | 5_2:+16230036 | None:intergenic |
| TAACCTACCCTACTCTACCA+AGG | 0.597374 | 5_2:-16229809 | Msa0760040:CDS |
| TGTAATGTTATTGGTGACAA+GGG | 0.597568 | 5_2:-16231747 | Msa0760040:CDS |
| TCGCTGTAACCGGATTTCCA+TGG | 0.601134 | 5_2:+16230242 | None:intergenic |
| GTGTAATGTTATTGGTGACA+AGG | 0.611263 | 5_2:-16231748 | Msa0760040:CDS |
| TATAGTTGGAGTGACTGTCT+GGG | 0.611721 | 5_2:-16229988 | Msa0760040:CDS |
| AGCAGAACAAACTTCAAGAA+CGG | 0.621236 | 5_2:-16230686 | Msa0760040:CDS |
| TAAGAGACCAAACCGTGTCA+TGG | 0.627227 | 5_2:+16229740 | None:intergenic |
| AACCCTTGGTAGAGTAGGGT+AGG | 0.643864 | 5_2:+16229806 | None:intergenic |
| AACACTAGTGGAGCCAACAT+AGG | 0.645966 | 5_2:+16229780 | None:intergenic |
| CTACAATAAGAGGCATGCAA+GGG | 0.653280 | 5_2:+16229955 | None:intergenic |
| AAGATTGACGAAACAAGCAA+TGG | 0.657302 | 5_2:-16230284 | Msa0760040:CDS |
| GTAACCGGATTTCCATGGCA+GGG | 0.689857 | 5_2:+16230247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATGATTAATTG+GGG | - | chr5_2:16230048-16230067 | Msa0760040:CDS | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | + | chr5_2:16230464-16230483 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | - | chr5_2:16230466-16230485 | Msa0760040:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | - | chr5_2:16230467-16230486 | Msa0760040:intron | 10.0% |
| !! | AAATATTATATGATTAATTG+GGG | - | chr5_2:16230048-16230067 | Msa0760040:CDS | 10.0% |
| !! | ATAAAAATCTAATATAGTAT+CGG | + | chr5_2:16230464-16230483 | None:intergenic | 10.0% |
| !!! | ACTATATTAGATTTTTATAT+TGG | - | chr5_2:16230466-16230485 | Msa0760040:intron | 10.0% |
| !!! | CTATATTAGATTTTTATATT+GGG | - | chr5_2:16230467-16230486 | Msa0760040:intron | 10.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | - | chr5_2:16230266-16230285 | Msa0760040:CDS | 15.0% |
| !!! | TGCTATTAGATTTTTATATT+GGG | - | chr5_2:16230266-16230285 | Msa0760040:CDS | 15.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | - | chr5_2:16229825-16229844 | Msa0760040:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | + | chr5_2:16230021-16230040 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | + | chr5_2:16230022-16230041 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | + | chr5_2:16230130-16230149 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | - | chr5_2:16230265-16230284 | Msa0760040:CDS | 20.0% |
| !! | TGCGTGAATATAATAAATAT+TGG | - | chr5_2:16230417-16230436 | Msa0760040:intron | 20.0% |
| !! | GCGTGAATATAATAAATATT+GGG | - | chr5_2:16230418-16230437 | Msa0760040:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | + | chr5_2:16230641-16230660 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | + | chr5_2:16230917-16230936 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | + | chr5_2:16231081-16231100 | None:intergenic | 20.0% |
| !!! | GATTAGTTATTATTTACACT+TGG | - | chr5_2:16229825-16229844 | Msa0760040:CDS | 20.0% |
| !! | ACATGTATTATAATAAGCAA+GGG | + | chr5_2:16230021-16230040 | None:intergenic | 20.0% |
| !! | AACATGTATTATAATAAGCA+AGG | + | chr5_2:16230022-16230041 | None:intergenic | 20.0% |
| !! | TTATGTTTAAGCATTATATC+TGG | + | chr5_2:16230130-16230149 | None:intergenic | 20.0% |
| !!! | GTGCTATTAGATTTTTATAT+TGG | - | chr5_2:16230265-16230284 | Msa0760040:CDS | 20.0% |
| !! | TGCGTGAATATAATAAATAT+TGG | - | chr5_2:16230417-16230436 | Msa0760040:intron | 20.0% |
| !! | GCGTGAATATAATAAATATT+GGG | - | chr5_2:16230418-16230437 | Msa0760040:intron | 20.0% |
| !!! | ACTAAGAAAAAGGAAAATTT+TGG | + | chr5_2:16230641-16230660 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCAATTTTTGCAA+TGG | + | chr5_2:16230917-16230936 | None:intergenic | 20.0% |
| !! | ATTAACAAAGTCAACAAAAA+TGG | + | chr5_2:16231081-16231100 | None:intergenic | 20.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | + | chr5_2:16229815-16229834 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACTTAGTATT+GGG | - | chr5_2:16229875-16229894 | Msa0760040:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | - | chr5_2:16230134-16230153 | Msa0760040:CDS | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | + | chr5_2:16230156-16230175 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | - | chr5_2:16230290-16230309 | Msa0760040:CDS | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | - | chr5_2:16230494-16230513 | Msa0760040:intron | 25.0% |
| !!! | GAATTTTTGTTTTTCCCAAT+AGG | - | chr5_2:16230569-16230588 | Msa0760040:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | - | chr5_2:16230918-16230937 | Msa0760040:intron | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | - | chr5_2:16230919-16230938 | Msa0760040:intron | 25.0% |
| ! | ATCAGATAAACGAAAATGTT+CGG | - | chr5_2:16231134-16231153 | Msa0760040:intron | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | - | chr5_2:16231157-16231176 | Msa0760040:intron | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | + | chr5_2:16231194-16231213 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | + | chr5_2:16231424-16231443 | None:intergenic | 25.0% |
| ! | ATAACTAATCCAATTCTGAT+AGG | + | chr5_2:16229815-16229834 | None:intergenic | 25.0% |
| ! | TTCAATGTGAACTTAGTATT+GGG | - | chr5_2:16229875-16229894 | Msa0760040:CDS | 25.0% |
| ! | TAATGCTTAAACATAAACAC+CGG | - | chr5_2:16230134-16230153 | Msa0760040:CDS | 25.0% |
| !! | CCATTTTCTTCAATTATTAC+CGG | + | chr5_2:16230156-16230175 | None:intergenic | 25.0% |
| ! | CTAACTCATTAATACAAAAC+CGG | - | chr5_2:16230290-16230309 | Msa0760040:CDS | 25.0% |
| ! | ACTCATCTTTACAACAAAAT+CGG | - | chr5_2:16230494-16230513 | Msa0760040:intron | 25.0% |
| !!! | GAATTTTTGTTTTTCCCAAT+AGG | - | chr5_2:16230569-16230588 | Msa0760040:intron | 25.0% |
| ! | TGCAAAAATTGAAAACTTAG+AGG | - | chr5_2:16230918-16230937 | Msa0760040:intron | 25.0% |
| ! | GCAAAAATTGAAAACTTAGA+GGG | - | chr5_2:16230919-16230938 | Msa0760040:intron | 25.0% |
| ! | ATCAGATAAACGAAAATGTT+CGG | - | chr5_2:16231134-16231153 | Msa0760040:intron | 25.0% |
| ! | CTTAAAGAAATTCAAGGAAA+GGG | - | chr5_2:16231157-16231176 | Msa0760040:intron | 25.0% |
| !!! | ATTGTCAATGTTTTGATCTT+TGG | + | chr5_2:16231194-16231213 | None:intergenic | 25.0% |
| !!! | TCTTCTATATCTTTTGAGAT+TGG | + | chr5_2:16231424-16231443 | None:intergenic | 25.0% |
| TTTGGCTAGTGTAATGTTAT+TGG | - | chr5_2:16229748-16229767 | Msa0760040:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | - | chr5_2:16229757-16229776 | Msa0760040:CDS | 30.0% |
| CTTCAATGTGAACTTAGTAT+TGG | - | chr5_2:16229874-16229893 | Msa0760040:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | - | chr5_2:16229888-16229907 | Msa0760040:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | - | chr5_2:16229897-16229916 | Msa0760040:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | - | chr5_2:16230055-16230074 | Msa0760040:CDS | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | - | chr5_2:16230153-16230172 | Msa0760040:CDS | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | + | chr5_2:16230292-16230311 | None:intergenic | 30.0% |
| ! | TAAAGTCAGAACACATTTTC+AGG | - | chr5_2:16230318-16230337 | Msa0760040:CDS | 30.0% |
| AAGACACATGAGATGTAATA+TGG | + | chr5_2:16230344-16230363 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | - | chr5_2:16230351-16230370 | Msa0760040:CDS | 30.0% |
| ! | ACATAGGAAACAGTTCATTT+TGG | - | chr5_2:16230596-16230615 | Msa0760040:CDS | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | - | chr5_2:16230924-16230943 | Msa0760040:intron | 30.0% | |
| AAACTGATGTACAAGTTACA+AGG | + | chr5_2:16230975-16230994 | None:intergenic | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | + | chr5_2:16231014-16231033 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | - | chr5_2:16231156-16231175 | Msa0760040:intron | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | - | chr5_2:16231308-16231327 | Msa0760040:intron | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | - | chr5_2:16231309-16231328 | Msa0760040:intron | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | + | chr5_2:16231356-16231375 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | - | chr5_2:16231358-16231377 | Msa0760040:intron | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | + | chr5_2:16231418-16231437 | None:intergenic | 30.0% |
| TCTAAAAAACGTAACACTAG+TGG | + | chr5_2:16231739-16231758 | None:intergenic | 30.0% | |
| TTTGGCTAGTGTAATGTTAT+TGG | - | chr5_2:16229748-16229767 | Msa0760040:CDS | 30.0% | |
| ! | TGTAATGTTATTGGTGACAA+GGG | - | chr5_2:16229757-16229776 | Msa0760040:CDS | 30.0% |
| CTTCAATGTGAACTTAGTAT+TGG | - | chr5_2:16229874-16229893 | Msa0760040:CDS | 30.0% | |
| ! | TAGTATTGGGAATTATCTCA+TGG | - | chr5_2:16229888-16229907 | Msa0760040:CDS | 30.0% |
| GAATTATCTCATGGACAATA+GGG | - | chr5_2:16229897-16229916 | Msa0760040:CDS | 30.0% | |
| ATATGATTAATTGGGGTTAC+AGG | - | chr5_2:16230055-16230074 | Msa0760040:CDS | 30.0% | |
| CCGGTAATAATTGAAGAAAA+TGG | - | chr5_2:16230153-16230172 | Msa0760040:CDS | 30.0% | |
| !! | CGGTTTTGTATTAATGAGTT+AGG | + | chr5_2:16230292-16230311 | None:intergenic | 30.0% |
| ! | TAAAGTCAGAACACATTTTC+AGG | - | chr5_2:16230318-16230337 | Msa0760040:CDS | 30.0% |
| AAGACACATGAGATGTAATA+TGG | + | chr5_2:16230344-16230363 | None:intergenic | 30.0% | |
| ! | TCTCATGTGTCTTAGAATTT+TGG | - | chr5_2:16230351-16230370 | Msa0760040:CDS | 30.0% |
| ! | ACATAGGAAACAGTTCATTT+TGG | - | chr5_2:16230596-16230615 | Msa0760040:CDS | 30.0% |
| AATTGAAAACTTAGAGGGAA+AGG | - | chr5_2:16230924-16230943 | Msa0760040:intron | 30.0% | |
| AAACTGATGTACAAGTTACA+AGG | + | chr5_2:16230975-16230994 | None:intergenic | 30.0% | |
| TCTCTGTATTAAATGTCGAT+CGG | + | chr5_2:16231014-16231033 | None:intergenic | 30.0% | |
| GCTTAAAGAAATTCAAGGAA+AGG | - | chr5_2:16231156-16231175 | Msa0760040:intron | 30.0% | |
| TTCTGATGCACAAAGATATT+TGG | - | chr5_2:16231308-16231327 | Msa0760040:intron | 30.0% | |
| TCTGATGCACAAAGATATTT+GGG | - | chr5_2:16231309-16231328 | Msa0760040:intron | 30.0% | |
| TTTCAAGAGTTTAAGCAACT+CGG | + | chr5_2:16231356-16231375 | None:intergenic | 30.0% | |
| TTGCTTAAACTCTTGAAAAC+AGG | - | chr5_2:16231358-16231377 | Msa0760040:intron | 30.0% | |
| !!! | ATATCTTTTGAGATTGGTTC+TGG | + | chr5_2:16231418-16231437 | None:intergenic | 30.0% |
| TCTAAAAAACGTAACACTAG+TGG | + | chr5_2:16231739-16231758 | None:intergenic | 30.0% | |
| ! | GTGTAATGTTATTGGTGACA+AGG | - | chr5_2:16229756-16229775 | Msa0760040:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | - | chr5_2:16229803-16229822 | Msa0760040:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | - | chr5_2:16229835-16229854 | Msa0760040:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | - | chr5_2:16229896-16229915 | Msa0760040:CDS | 35.0% | |
| GTGTTCTGACTTTACAAATC+CGG | + | chr5_2:16230312-16230331 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | - | chr5_2:16230508-16230527 | Msa0760040:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | + | chr5_2:16230548-16230567 | None:intergenic | 35.0% |
| TTTCCTATGTAGCACCTATT+GGG | + | chr5_2:16230586-16230605 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | - | chr5_2:16230646-16230665 | Msa0760040:CDS | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | + | chr5_2:16230651-16230670 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | - | chr5_2:16230650-16230669 | Msa0760040:CDS | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | + | chr5_2:16230705-16230724 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | - | chr5_2:16230818-16230837 | Msa0760040:intron | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | + | chr5_2:16230854-16230873 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | - | chr5_2:16230891-16230910 | Msa0760040:intron | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | + | chr5_2:16231010-16231029 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | - | chr5_2:16231111-16231130 | Msa0760040:intron | 35.0% | |
| GTTCGGCTTAAAGAAATTCA+AGG | - | chr5_2:16231151-16231170 | Msa0760040:intron | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | - | chr5_2:16231164-16231183 | Msa0760040:intron | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | + | chr5_2:16231219-16231238 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | - | chr5_2:16231220-16231239 | Msa0760040:intron | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | + | chr5_2:16231275-16231294 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | - | chr5_2:16231282-16231301 | Msa0760040:intron | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | - | chr5_2:16231369-16231388 | Msa0760040:intron | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | + | chr5_2:16231471-16231490 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | - | chr5_2:16231656-16231675 | Msa0760040:CDS | 35.0% |
| ! | TTTTAGACCAAACCATGACA+CGG | - | chr5_2:16231752-16231771 | Msa0760040:CDS | 35.0% |
| ! | GTGTAATGTTATTGGTGACA+AGG | - | chr5_2:16229756-16229775 | Msa0760040:CDS | 35.0% |
| TGCTTGTTTCCTATCAGAAT+TGG | - | chr5_2:16229803-16229822 | Msa0760040:CDS | 35.0% | |
| TATTTACACTTGGACAGAGT+TGG | - | chr5_2:16229835-16229854 | Msa0760040:CDS | 35.0% | |
| GGAATTATCTCATGGACAAT+AGG | - | chr5_2:16229896-16229915 | Msa0760040:CDS | 35.0% | |
| GTGTTCTGACTTTACAAATC+CGG | + | chr5_2:16230312-16230331 | None:intergenic | 35.0% | |
| !! | CAAAATCGGCTTGTAAATTG+AGG | - | chr5_2:16230508-16230527 | Msa0760040:intron | 35.0% |
| ! | TAACCACATCAGACTAGTTA+TGG | + | chr5_2:16230548-16230567 | None:intergenic | 35.0% |
| TTTCCTATGTAGCACCTATT+GGG | + | chr5_2:16230586-16230605 | None:intergenic | 35.0% | |
| !! | TTCCTTTTTCTTAGTGCTGA+AGG | - | chr5_2:16230646-16230665 | Msa0760040:CDS | 35.0% |
| ATCCTTCAGCACTAAGAAAA+AGG | + | chr5_2:16230651-16230670 | None:intergenic | 35.0% | |
| !! | TTTTTCTTAGTGCTGAAGGA+TGG | - | chr5_2:16230650-16230669 | Msa0760040:CDS | 35.0% |
| GTTAGGAGTAAGAGTTAGTT+AGG | + | chr5_2:16230705-16230724 | None:intergenic | 35.0% | |
| AGCAGAACAAACTTCAAGAA+CGG | - | chr5_2:16230818-16230837 | Msa0760040:intron | 35.0% | |
| ! | CATCATTTTGCACTCTTTGA+CGG | + | chr5_2:16230854-16230873 | None:intergenic | 35.0% |
| ACTTGAAGAGGAACATGATA+TGG | - | chr5_2:16230891-16230910 | Msa0760040:intron | 35.0% | |
| TGTATTAAATGTCGATCGGA+CGG | + | chr5_2:16231010-16231029 | None:intergenic | 35.0% | |
| TATCTCTTGTTGACAGTTGA+GGG | - | chr5_2:16231111-16231130 | Msa0760040:intron | 35.0% | |
| GTTCGGCTTAAAGAAATTCA+AGG | - | chr5_2:16231151-16231170 | Msa0760040:intron | 35.0% | |
| AAATTCAAGGAAAGGGATAC+TGG | - | chr5_2:16231164-16231183 | Msa0760040:intron | 35.0% | |
| TGCTTGTTTCGTCAATCTTT+CGG | + | chr5_2:16231219-16231238 | None:intergenic | 35.0% | |
| AAGATTGACGAAACAAGCAA+TGG | - | chr5_2:16231220-16231239 | Msa0760040:intron | 35.0% | |
| ! | AACTTCATTTTCGCTGTAAC+CGG | + | chr5_2:16231275-16231294 | None:intergenic | 35.0% |
| CGAAAATGAAGTTTCCCTTA+AGG | - | chr5_2:16231282-16231301 | Msa0760040:intron | 35.0% | |
| CTTGAAAACAGGACAAAAGT+TGG | - | chr5_2:16231369-16231388 | Msa0760040:intron | 35.0% | |
| ATTGCGAAATTGCAACATCT+CGG | + | chr5_2:16231471-16231490 | None:intergenic | 35.0% | |
| ! | TTGCTCTTTTAAGCTTCAAC+TGG | - | chr5_2:16231656-16231675 | Msa0760040:CDS | 35.0% |
| ! | TTTTAGACCAAACCATGACA+CGG | - | chr5_2:16231752-16231771 | Msa0760040:CDS | 35.0% |
| ! | GGCACTAATTTCTGAGCTTT+TGG | - | chr5_2:16229730-16229749 | Msa0760040:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | - | chr5_2:16229775-16229794 | Msa0760040:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | - | chr5_2:16229940-16229959 | Msa0760040:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | + | chr5_2:16230195-16230214 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | - | chr5_2:16230193-16230212 | Msa0760040:CDS | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | - | chr5_2:16230223-16230242 | Msa0760040:CDS | 40.0% | |
| TTGGGTAGTCCTGAATGTAT+AGG | - | chr5_2:16230436-16230455 | Msa0760040:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | - | chr5_2:16230542-16230561 | Msa0760040:intron | 40.0% |
| ! | TTTCCCAATAGGTGCTACAT+AGG | - | chr5_2:16230580-16230599 | Msa0760040:intron | 40.0% |
| GTTTCCTATGTAGCACCTAT+TGG | + | chr5_2:16230587-16230606 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | + | chr5_2:16230741-16230760 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | + | chr5_2:16230742-16230761 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | - | chr5_2:16230747-16230766 | Msa0760040:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | + | chr5_2:16230797-16230816 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | - | chr5_2:16230828-16230847 | Msa0760040:intron | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | - | chr5_2:16230852-16230871 | Msa0760040:intron | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | + | chr5_2:16230971-16230990 | None:intergenic | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | - | chr5_2:16231110-16231129 | Msa0760040:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | + | chr5_2:16231299-16231318 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | + | chr5_2:16231300-16231319 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | - | chr5_2:16231483-16231502 | Msa0760040:intron | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | - | chr5_2:16231502-16231521 | Msa0760040:intron | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | - | chr5_2:16231515-16231534 | Msa0760040:intron | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | - | chr5_2:16231516-16231535 | Msa0760040:intron | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | + | chr5_2:16231552-16231571 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | + | chr5_2:16231562-16231581 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | - | chr5_2:16231667-16231686 | Msa0760040:CDS | 40.0% |
| ! | GGCACTAATTTCTGAGCTTT+TGG | - | chr5_2:16229730-16229749 | Msa0760040:CDS | 40.0% |
| AAGGGCTTTCTCTATGCTTA+AGG | - | chr5_2:16229775-16229794 | Msa0760040:CDS | 40.0% | |
| AGCTGTGAATGCCATTCAAA+GGG | - | chr5_2:16229940-16229959 | Msa0760040:CDS | 40.0% | |
| CACTACAATGCTGATACATG+TGG | + | chr5_2:16230195-16230214 | None:intergenic | 40.0% | |
| CACATGTATCAGCATTGTAG+TGG | - | chr5_2:16230193-16230212 | Msa0760040:CDS | 40.0% | |
| CATTGACATGTGTCAAACAC+CGG | - | chr5_2:16230223-16230242 | Msa0760040:CDS | 40.0% | |
| TTGGGTAGTCCTGAATGTAT+AGG | - | chr5_2:16230436-16230455 | Msa0760040:intron | 40.0% | |
| ! | AGACCATAACTAGTCTGATG+TGG | - | chr5_2:16230542-16230561 | Msa0760040:intron | 40.0% |
| ! | TTTCCCAATAGGTGCTACAT+AGG | - | chr5_2:16230580-16230599 | Msa0760040:intron | 40.0% |
| GTTTCCTATGTAGCACCTAT+TGG | + | chr5_2:16230587-16230606 | None:intergenic | 40.0% | |
| CAATGTTAGGTAAGCCCAAT+GGG | + | chr5_2:16230741-16230760 | None:intergenic | 40.0% | |
| ACAATGTTAGGTAAGCCCAA+TGG | + | chr5_2:16230742-16230761 | None:intergenic | 40.0% | |
| CTTACCTAACATTGTGCAGT+TGG | - | chr5_2:16230747-16230766 | Msa0760040:intron | 40.0% | |
| CCATTCTAGATTCTCCATCT+CGG | + | chr5_2:16230797-16230816 | None:intergenic | 40.0% | |
| ACTTCAAGAACGGTTCCAAA+TGG | - | chr5_2:16230828-16230847 | Msa0760040:intron | 40.0% | |
| ! | CGTCAAAGAGTGCAAAATGA+TGG | - | chr5_2:16230852-16230871 | Msa0760040:intron | 40.0% |
| TGATGTACAAGTTACAAGGC+AGG | + | chr5_2:16230971-16230990 | None:intergenic | 40.0% | |
| CTATCTCTTGTTGACAGTTG+AGG | - | chr5_2:16231110-16231129 | Msa0760040:intron | 40.0% | |
| GTGCATCAGAAGATCCTTAA+GGG | + | chr5_2:16231299-16231318 | None:intergenic | 40.0% | |
| TGTGCATCAGAAGATCCTTA+AGG | + | chr5_2:16231300-16231319 | None:intergenic | 40.0% | |
| ! | TTCGCAATCAATTTTCAGCG+CGG | - | chr5_2:16231483-16231502 | Msa0760040:intron | 40.0% |
| !! | GCGGTTTTGTCACTTATAGT+TGG | - | chr5_2:16231502-16231521 | Msa0760040:intron | 40.0% |
| TTATAGTTGGAGTGACTGTC+TGG | - | chr5_2:16231515-16231534 | Msa0760040:intron | 40.0% | |
| TATAGTTGGAGTGACTGTCT+GGG | - | chr5_2:16231516-16231535 | Msa0760040:intron | 40.0% | |
| ! | CTACAATAAGAGGCATGCAA+GGG | + | chr5_2:16231552-16231571 | None:intergenic | 40.0% |
| GCAAAGAGAGCTACAATAAG+AGG | + | chr5_2:16231562-16231581 | None:intergenic | 40.0% | |
| ! | AGCTTCAACTGGTTCATTCT+TGG | - | chr5_2:16231667-16231686 | Msa0760040:CDS | 40.0% |
| GGCTTTCTCTATGCTTAAGG+AGG | - | chr5_2:16229778-16229797 | Msa0760040:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | - | chr5_2:16229840-16229859 | Msa0760040:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | + | chr5_2:16229935-16229954 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | - | chr5_2:16229939-16229958 | Msa0760040:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | + | chr5_2:16229954-16229973 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | - | chr5_2:16230101-16230120 | Msa0760040:CDS | 45.0% |
| GTATCGGAGCCTATACATTC+AGG | + | chr5_2:16230448-16230467 | None:intergenic | 45.0% | |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | - | chr5_2:16230655-16230674 | Msa0760040:CDS | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | + | chr5_2:16230722-16230741 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | - | chr5_2:16230723-16230742 | Msa0760040:CDS | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | - | chr5_2:16230724-16230743 | Msa0760040:CDS | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | + | chr5_2:16230754-16230773 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | - | chr5_2:16230794-16230813 | Msa0760040:intron | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | - | chr5_2:16230879-16230898 | Msa0760040:intron | 45.0% | |
| GTACATCAGTTTATCTGCCC+AGG | - | chr5_2:16230983-16231002 | Msa0760040:intron | 45.0% | |
| GGTTTAGCAGCAGAATTAGC+AGG | + | chr5_2:16231397-16231416 | None:intergenic | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | + | chr5_2:16231553-16231572 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | - | chr5_2:16231568-16231587 | Msa0760040:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | - | chr5_2:16231695-16231714 | Msa0760040:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | - | chr5_2:16231696-16231715 | Msa0760040:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | + | chr5_2:16231727-16231746 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | + | chr5_2:16231767-16231786 | None:intergenic | 45.0% | |
| GGCTTTCTCTATGCTTAAGG+AGG | - | chr5_2:16229778-16229797 | Msa0760040:CDS | 45.0% | |
| ! | ACACTTGGACAGAGTTGGTT+AGG | - | chr5_2:16229840-16229859 | Msa0760040:CDS | 45.0% |
| ATGGCATTCACAGCTCTTAC+AGG | + | chr5_2:16229935-16229954 | None:intergenic | 45.0% | |
| GAGCTGTGAATGCCATTCAA+AGG | - | chr5_2:16229939-16229958 | Msa0760040:CDS | 45.0% | |
| AACCTGTCTCTCCCTTTGAA+TGG | + | chr5_2:16229954-16229973 | None:intergenic | 45.0% | |
| !! | GTGTGAAGCATTGACAGTCA+CGG | - | chr5_2:16230101-16230120 | Msa0760040:CDS | 45.0% |
| GTATCGGAGCCTATACATTC+AGG | + | chr5_2:16230448-16230467 | None:intergenic | 45.0% | |
| ! | CTTAGTGCTGAAGGATGGAT+TGG | - | chr5_2:16230655-16230674 | Msa0760040:CDS | 45.0% |
| TGGGCAGGTTTCTGTTAGTT+AGG | + | chr5_2:16230722-16230741 | None:intergenic | 45.0% | |
| ACTAACAGAAACCTGCCCAT+TGG | - | chr5_2:16230723-16230742 | Msa0760040:CDS | 45.0% | |
| CTAACAGAAACCTGCCCATT+GGG | - | chr5_2:16230724-16230743 | Msa0760040:CDS | 45.0% | |
| CGTTCCAACTGCACAATGTT+AGG | + | chr5_2:16230754-16230773 | None:intergenic | 45.0% | |
| CCGAGATGGAGAATCTAGAA+TGG | - | chr5_2:16230794-16230813 | Msa0760040:intron | 45.0% | |
| GCTACTAGCAGAACTTGAAG+AGG | - | chr5_2:16230879-16230898 | Msa0760040:intron | 45.0% | |
| GTACATCAGTTTATCTGCCC+AGG | - | chr5_2:16230983-16231002 | Msa0760040:intron | 45.0% | |
| GGTTTAGCAGCAGAATTAGC+AGG | + | chr5_2:16231397-16231416 | None:intergenic | 45.0% | |
| ! | GCTACAATAAGAGGCATGCA+AGG | + | chr5_2:16231553-16231572 | None:intergenic | 45.0% |
| ! | GTAGCTCTCTTTGCTGTAGT+AGG | - | chr5_2:16231568-16231587 | Msa0760040:CDS | 45.0% |
| TAACCTACCCTACTCTACCA+AGG | - | chr5_2:16231695-16231714 | Msa0760040:CDS | 45.0% | |
| AACCTACCCTACTCTACCAA+GGG | - | chr5_2:16231696-16231715 | Msa0760040:CDS | 45.0% | |
| AACACTAGTGGAGCCAACAT+AGG | + | chr5_2:16231727-16231746 | None:intergenic | 45.0% | |
| TAAGAGACCAAACCGTGTCA+TGG | + | chr5_2:16231767-16231786 | None:intergenic | 45.0% | |
| !! | TAAAATATTATATGATTAAT+TGG | - | chr5_2:16230046-16230065 | Msa0760040:CDS | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | - | chr5_2:16230047-16230066 | Msa0760040:CDS | 5.0% |
| !! | TAAAATATTATATGATTAAT+TGG | - | chr5_2:16230046-16230065 | Msa0760040:CDS | 5.0% |
| !! | AAAATATTATATGATTAATT+GGG | - | chr5_2:16230047-16230066 | Msa0760040:CDS | 5.0% |
| TGCCATTCAAAGGGAGAGAC+AGG | - | chr5_2:16229949-16229968 | Msa0760040:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | + | chr5_2:16230245-16230264 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | + | chr5_2:16230249-16230268 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | - | chr5_2:16230780-16230799 | Msa0760040:intron | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | + | chr5_2:16230846-16230865 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | + | chr5_2:16230964-16230983 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | + | chr5_2:16231260-16231279 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | + | chr5_2:16231261-16231280 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | + | chr5_2:16231265-16231284 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | + | chr5_2:16231643-16231662 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | + | chr5_2:16231701-16231720 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | + | chr5_2:16231705-16231724 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | - | chr5_2:16231711-16231730 | Msa0760040:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | - | chr5_2:16231757-16231776 | Msa0760040:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | + | chr5_2:16231762-16231781 | None:intergenic | 50.0% | |
| TGCCATTCAAAGGGAGAGAC+AGG | - | chr5_2:16229949-16229968 | Msa0760040:CDS | 50.0% | |
| ! | TGACACTCTGAAGATGTGGC+CGG | + | chr5_2:16230245-16230264 | None:intergenic | 50.0% |
| ! | GCACTGACACTCTGAAGATG+TGG | + | chr5_2:16230249-16230268 | None:intergenic | 50.0% |
| TCATCGAATGCAGACCGAGA+TGG | - | chr5_2:16230780-16230799 | Msa0760040:intron | 50.0% | |
| TGCACTCTTTGACGGCCATT+TGG | + | chr5_2:16230846-16230865 | None:intergenic | 50.0% | |
| CAAGTTACAAGGCAGGCACA+TGG | + | chr5_2:16230964-16230983 | None:intergenic | 50.0% | |
| GTAACCGGATTTCCATGGCA+GGG | + | chr5_2:16231260-16231279 | None:intergenic | 50.0% | |
| TGTAACCGGATTTCCATGGC+AGG | + | chr5_2:16231261-16231280 | None:intergenic | 50.0% | |
| TCGCTGTAACCGGATTTCCA+TGG | + | chr5_2:16231265-16231284 | None:intergenic | 50.0% | |
| AGAGCAACTGCATCAGAAGC+AGG | + | chr5_2:16231643-16231662 | None:intergenic | 50.0% | |
| AACCCTTGGTAGAGTAGGGT+AGG | + | chr5_2:16231701-16231720 | None:intergenic | 50.0% | |
| GTGCAACCCTTGGTAGAGTA+GGG | + | chr5_2:16231705-16231724 | None:intergenic | 50.0% | |
| ACCAAGGGTTGCACCTATGT+TGG | - | chr5_2:16231711-16231730 | Msa0760040:CDS | 50.0% | |
| GACCAAACCATGACACGGTT+TGG | - | chr5_2:16231757-16231776 | Msa0760040:CDS | 50.0% | |
| GACCAAACCGTGTCATGGTT+TGG | + | chr5_2:16231762-16231781 | None:intergenic | 50.0% | |
| ACCAAGCCCAGTTAAGTGCC+GGG | + | chr5_2:16230398-16230417 | None:intergenic | 55.0% | |
| CACCAAGCCCAGTTAAGTGC+CGG | + | chr5_2:16230399-16230418 | None:intergenic | 55.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | + | chr5_2:16230737-16230756 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | + | chr5_2:16231003-16231022 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | + | chr5_2:16231004-16231023 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | + | chr5_2:16231253-16231272 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | - | chr5_2:16231253-16231272 | Msa0760040:intron | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | + | chr5_2:16231706-16231725 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | + | chr5_2:16231715-16231734 | None:intergenic | 55.0% | |
| ACCAAGCCCAGTTAAGTGCC+GGG | + | chr5_2:16230398-16230417 | None:intergenic | 55.0% | |
| CACCAAGCCCAGTTAAGTGC+CGG | + | chr5_2:16230399-16230418 | None:intergenic | 55.0% | |
| GTTAGGTAAGCCCAATGGGC+AGG | + | chr5_2:16230737-16230756 | None:intergenic | 55.0% | |
| AATGTCGATCGGACGGACCT+GGG | + | chr5_2:16231003-16231022 | None:intergenic | 55.0% | |
| AAATGTCGATCGGACGGACC+TGG | + | chr5_2:16231004-16231023 | None:intergenic | 55.0% | |
| GATTTCCATGGCAGGGTAGG+AGG | + | chr5_2:16231253-16231272 | None:intergenic | 55.0% | |
| CCTACCCTGCCATGGAAATC+CGG | - | chr5_2:16231253-16231272 | Msa0760040:intron | 55.0% | |
| GGTGCAACCCTTGGTAGAGT+AGG | + | chr5_2:16231706-16231725 | None:intergenic | 55.0% | |
| GCCAACATAGGTGCAACCCT+TGG | + | chr5_2:16231715-16231734 | None:intergenic | 55.0% | |
| TTCCCAATGCACCTCACGCC+CGG | - | chr5_2:16230377-16230396 | Msa0760040:CDS | 60.0% | |
| CTCACGCCCGGCACTTAACT+GGG | - | chr5_2:16230389-16230408 | Msa0760040:intron | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | - | chr5_2:16231245-16231264 | Msa0760040:intron | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | + | chr5_2:16231250-16231269 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | + | chr5_2:16231256-16231275 | None:intergenic | 60.0% | |
| TTCCCAATGCACCTCACGCC+CGG | - | chr5_2:16230377-16230396 | Msa0760040:CDS | 60.0% | |
| CTCACGCCCGGCACTTAACT+GGG | - | chr5_2:16230389-16230408 | Msa0760040:intron | 60.0% | |
| TTCCTCCTCCTACCCTGCCA+TGG | - | chr5_2:16231245-16231264 | Msa0760040:intron | 60.0% | |
| TTCCATGGCAGGGTAGGAGG+AGG | + | chr5_2:16231250-16231269 | None:intergenic | 60.0% | |
| CCGGATTTCCATGGCAGGGT+AGG | + | chr5_2:16231256-16231275 | None:intergenic | 60.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | + | chr5_2:16230382-16230401 | None:intergenic | 65.0% | |
| !! | CCAGTTAAGTGCCGGGCGTG+AGG | + | chr5_2:16230391-16230410 | None:intergenic | 65.0% |
| CCTCACGCCCGGCACTTAAC+TGG | - | chr5_2:16230388-16230407 | Msa0760040:intron | 65.0% | |
| GCCCGGCACTTAACTGGGCT+TGG | - | chr5_2:16230394-16230413 | Msa0760040:intron | 65.0% | |
| TGCCGGGCGTGAGGTGCATT+GGG | + | chr5_2:16230382-16230401 | None:intergenic | 65.0% | |
| !! | CCAGTTAAGTGCCGGGCGTG+AGG | + | chr5_2:16230391-16230410 | None:intergenic | 65.0% |
| CCTCACGCCCGGCACTTAAC+TGG | - | chr5_2:16230388-16230407 | Msa0760040:intron | 65.0% | |
| GCCCGGCACTTAACTGGGCT+TGG | - | chr5_2:16230394-16230413 | Msa0760040:intron | 65.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | + | chr5_2:16230383-16230402 | None:intergenic | 70.0% | |
| GTGCCGGGCGTGAGGTGCAT+TGG | + | chr5_2:16230383-16230402 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 16229728 | 16231798 | 16229728 | ID=Msa0760040;Name=Msa0760040 |
| chr5_2 | mRNA | 16229728 | 16231798 | 16229728 | ID=Msa0760040-mRNA-1;Parent=Msa0760040;Name=Msa0760040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.33|1|1|1|3|0|364 |
| chr5_2 | exon | 16231556 | 16231798 | 16231556 | ID=Msa0760040-mRNA-1:exon:7225;Parent=Msa0760040-mRNA-1 |
| chr5_2 | exon | 16230581 | 16230760 | 16230581 | ID=Msa0760040-mRNA-1:exon:7224;Parent=Msa0760040-mRNA-1 |
| chr5_2 | exon | 16229728 | 16230399 | 16229728 | ID=Msa0760040-mRNA-1:exon:7223;Parent=Msa0760040-mRNA-1 |
| chr5_2 | CDS | 16231556 | 16231798 | 16231556 | ID=Msa0760040-mRNA-1:cds;Parent=Msa0760040-mRNA-1 |
| chr5_2 | CDS | 16230581 | 16230760 | 16230581 | ID=Msa0760040-mRNA-1:cds;Parent=Msa0760040-mRNA-1 |
| chr5_2 | CDS | 16229728 | 16230399 | 16229728 | ID=Msa0760040-mRNA-1:cds;Parent=Msa0760040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
