AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339860 MtrunA17_Chr2g0328571 92.398 171 7 4 1 170 18 183 1.02e-80 237
Msa0339860 MtrunA17_Chr1g0185161 90.643 171 8 6 1 170 1 164 1.41e-77 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339860 AT2G29180.1 41.772 158 75 5 20 163 5 159 6.21e-24 92.4

Find 44 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTATCCGTTATCACTAT+TGG 0.245133 2_4:-61136578 Msa0339860:CDS
ATGCTCCTAGTCCTAAAATT+TGG 0.251354 2_4:+61136979 None:intergenic
GCTTATCCGTTATCACTATT+GGG 0.260636 2_4:-61136577 Msa0339860:CDS
TCTGGTTGTAGTAGTGATAA+TGG 0.300412 2_4:+61136772 None:intergenic
GAAAGGAAGGTTGCAATCTT+TGG 0.300675 2_4:+61136869 None:intergenic
GAATACAACTGAGAATTTAC+TGG 0.312917 2_4:-61135364 Msa0339860:three_prime_UTR
GCTGTAGCAGCAACAGGATT+TGG 0.334339 2_4:+61136713 None:intergenic
TTCAAAGGAAGTCCAAACTA+TGG 0.343791 2_4:-61136736 Msa0339860:CDS
CATTGATGCTTCGGAGCAAT+TGG 0.360695 2_4:-61136669 Msa0339860:CDS
TACTCAACTTGCTAAATCAT+AGG 0.367002 2_4:+61135434 None:intergenic
CTGGTTGTAGTAGTGATAAT+GGG 0.369858 2_4:+61136773 None:intergenic
AACAGGATTTGGCCATAGTT+TGG 0.372494 2_4:+61136724 None:intergenic
AAAAGAAAAGAAAAGTAGTA+AGG 0.384781 2_4:-61135574 Msa0339860:CDS
AGGGCAGGACCTAAAGGATT+TGG 0.404020 2_4:-61135554 Msa0339860:CDS
ACTGAAGATGATGATTGATT+AGG 0.408774 2_4:-61135515 Msa0339860:exon
GAGAAAGATGAAGAAGTTGT+TGG 0.423658 2_4:+61136797 None:intergenic
TGCTACAGCCATTGATGCTT+CGG 0.431580 2_4:-61136678 Msa0339860:CDS
TCAACAGCTGTAGCAGCAAC+AGG 0.437132 2_4:+61136707 None:intergenic
CAATTGCTCCGAAGCATCAA+TGG 0.447559 2_4:+61136670 None:intergenic
AGAAGATGATGTTGAAAGGA+AGG 0.478894 2_4:+61136856 None:intergenic
TCATCAACTACCACTGATGA+TGG 0.480753 2_4:-61136644 Msa0339860:CDS
AAAGAAAAGAAAAGTAGTAA+GGG 0.491413 2_4:-61135573 Msa0339860:CDS
AAGAAGAAGATGATGTTGAA+AGG 0.496918 2_4:+61136852 None:intergenic
ACTCAACTTGCTAAATCATA+GGG 0.503216 2_4:+61135435 None:intergenic
GTAGTAAGGGCAGGACCTAA+AGG 0.510055 2_4:-61135560 Msa0339860:CDS
GGAGCATCATCTCAATCCCT+TGG 0.511742 2_4:-61136963 Msa0339860:five_prime_UTR
CTTATCCGTTATCACTATTG+GGG 0.525510 2_4:-61136576 Msa0339860:intron
CATCAACTACCACTGATGAT+GGG 0.525641 2_4:-61136643 Msa0339860:CDS
AAAAGAAAAGTAGTAAGGGC+AGG 0.536130 2_4:-61135569 Msa0339860:CDS
TACAACTTCTCAAACATCCA+AGG 0.540197 2_4:+61136946 None:intergenic
ATATACCCCAATAGTGATAA+CGG 0.550650 2_4:+61136571 None:intergenic
TTTCTTGACAAAGAGAGAGA+AGG 0.571247 2_4:-61135636 Msa0339860:CDS
CTAAATCATAGGGGAAAACA+AGG 0.571574 2_4:+61135445 None:intergenic
TGCAGTGGCCATTGCTGACG+TGG 0.589554 2_4:+61136916 None:intergenic
AGAGTGGGCCACGTCAGCAA+TGG 0.607603 2_4:-61136924 Msa0339860:exon
ATCAACTACCACTGATGATG+GGG 0.608198 2_4:-61136642 Msa0339860:CDS
ACAACTTCTCAAACATCCAA+GGG 0.612691 2_4:+61136947 None:intergenic
AAGAGACACCCCATCATCAG+TGG 0.647668 2_4:+61136634 None:intergenic
TGTTTGAGAAGTTGTAGAGT+GGG 0.649491 2_4:-61136939 Msa0339860:five_prime_UTR
ATGTTTGAGAAGTTGTAGAG+TGG 0.651403 2_4:-61136940 Msa0339860:five_prime_UTR
CTCAACTTGCTAAATCATAG+GGG 0.661129 2_4:+61135436 None:intergenic
GAGAAAGAAGAAGCAGCTAG+CGG 0.687353 2_4:-61135605 Msa0339860:CDS
ATAATGAATAACAATGTGTG+TGG 0.699753 2_4:+61135337 None:intergenic
TGATGATGCAAATAATGCAG+TGG 0.718262 2_4:+61136901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCTATATTAATAAAAGAAT+TGG + chr2_4:61135799-61135818 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG - chr2_4:61135797-61135816 Msa0339860:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG + chr2_4:61136131-61136150 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG + chr2_4:61136158-61136177 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG - chr2_4:61136174-61136193 Msa0339860:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG - chr2_4:61136378-61136397 Msa0339860:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG - chr2_4:61136522-61136541 Msa0339860:intron 15.0%
!! CTCTATATTAATAAAAGAAT+TGG + chr2_4:61135799-61135818 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG - chr2_4:61135797-61135816 Msa0339860:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG + chr2_4:61136131-61136150 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG + chr2_4:61136158-61136177 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG - chr2_4:61136174-61136193 Msa0339860:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG - chr2_4:61136378-61136397 Msa0339860:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG - chr2_4:61136522-61136541 Msa0339860:intron 15.0%
!!! TTGAAAAAATATGGATTTTC+TGG + chr2_4:61135559-61135578 None:intergenic 20.0%
!!! GAAAATCCATATTTTTTCAA+AGG - chr2_4:61135559-61135578 Msa0339860:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG - chr2_4:61135990-61136009 Msa0339860:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG - chr2_4:61135991-61136010 Msa0339860:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG + chr2_4:61136072-61136091 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG + chr2_4:61136159-61136178 None:intergenic 20.0%
!!! TTGCGATTTTAATACATTAA+GGG + chr2_4:61136342-61136361 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG + chr2_4:61136343-61136362 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG - chr2_4:61136736-61136755 Msa0339860:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG - chr2_4:61136737-61136756 Msa0339860:CDS 20.0%
!!! TTGAAAAAATATGGATTTTC+TGG + chr2_4:61135559-61135578 None:intergenic 20.0%
!!! GAAAATCCATATTTTTTCAA+AGG - chr2_4:61135559-61135578 Msa0339860:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG - chr2_4:61135990-61136009 Msa0339860:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG - chr2_4:61135991-61136010 Msa0339860:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG + chr2_4:61136072-61136091 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG + chr2_4:61136159-61136178 None:intergenic 20.0%
!!! TTGCGATTTTAATACATTAA+GGG + chr2_4:61136342-61136361 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG + chr2_4:61136343-61136362 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG - chr2_4:61136736-61136755 Msa0339860:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG - chr2_4:61136737-61136756 Msa0339860:CDS 20.0%
! TTAGTGAAAATTATTTCCCT+TGG - chr2_4:61135907-61135926 Msa0339860:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG + chr2_4:61136488-61136507 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG - chr2_4:61136596-61136615 Msa0339860:CDS 25.0%
! ATAATGAATAACAATGTGTG+TGG + chr2_4:61136976-61136995 None:intergenic 25.0%
! TTAGTGAAAATTATTTCCCT+TGG - chr2_4:61135907-61135926 Msa0339860:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG + chr2_4:61136488-61136507 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG - chr2_4:61136596-61136615 Msa0339860:CDS 25.0%
! ATAATGAATAACAATGTGTG+TGG + chr2_4:61136976-61136995 None:intergenic 25.0%
! GTAGCTCATAACCAAATTTT+AGG - chr2_4:61135320-61135339 Msa0339860:three_prime_UTR 30.0%
!!! CATAACCAAATTTTAGGACT+AGG - chr2_4:61135326-61135345 Msa0339860:three_prime_UTR 30.0%
AAGAAGAAGATGATGTTGAA+AGG + chr2_4:61135461-61135480 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG + chr2_4:61135488-61135507 None:intergenic 30.0%
! GGACTTCCTTTGAAAAAATA+TGG + chr2_4:61135568-61135587 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG - chr2_4:61135711-61135730 Msa0339860:intron 30.0%
ATATACCCCAATAGTGATAA+CGG + chr2_4:61135742-61135761 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG + chr2_4:61135965-61135984 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG - chr2_4:61136284-61136303 Msa0339860:intron 30.0%
CACATATTTAGAGACCTAAA+TGG + chr2_4:61136301-61136320 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG - chr2_4:61136301-61136320 Msa0339860:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG - chr2_4:61136571-61136590 Msa0339860:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG + chr2_4:61136577-61136596 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG - chr2_4:61136595-61136614 Msa0339860:CDS 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG - chr2_4:61136629-61136648 Msa0339860:CDS 30.0%
! ATCTTTTGACCAAATCCTTT+AGG + chr2_4:61136768-61136787 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG - chr2_4:61136795-61136814 Msa0339860:CDS 30.0%
!! ACTCAACTTGCTAAATCATA+GGG + chr2_4:61136878-61136897 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG + chr2_4:61136879-61136898 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG - chr2_4:61136910-61136929 Msa0339860:exon 30.0%
GAATACAACTGAGAATTTAC+TGG - chr2_4:61136946-61136965 Msa0339860:five_prime_UTR 30.0%
! GTAGCTCATAACCAAATTTT+AGG - chr2_4:61135320-61135339 Msa0339860:three_prime_UTR 30.0%
!!! CATAACCAAATTTTAGGACT+AGG - chr2_4:61135326-61135345 Msa0339860:three_prime_UTR 30.0%
AAGAAGAAGATGATGTTGAA+AGG + chr2_4:61135461-61135480 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG + chr2_4:61135488-61135507 None:intergenic 30.0%
! GGACTTCCTTTGAAAAAATA+TGG + chr2_4:61135568-61135587 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG - chr2_4:61135711-61135730 Msa0339860:intron 30.0%
ATATACCCCAATAGTGATAA+CGG + chr2_4:61135742-61135761 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG + chr2_4:61135965-61135984 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG - chr2_4:61136284-61136303 Msa0339860:intron 30.0%
CACATATTTAGAGACCTAAA+TGG + chr2_4:61136301-61136320 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG - chr2_4:61136301-61136320 Msa0339860:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG - chr2_4:61136571-61136590 Msa0339860:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG + chr2_4:61136577-61136596 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG - chr2_4:61136595-61136614 Msa0339860:CDS 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG - chr2_4:61136629-61136648 Msa0339860:CDS 30.0%
! ATCTTTTGACCAAATCCTTT+AGG + chr2_4:61136768-61136787 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG - chr2_4:61136795-61136814 Msa0339860:CDS 30.0%
!! ACTCAACTTGCTAAATCATA+GGG + chr2_4:61136878-61136897 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG + chr2_4:61136879-61136898 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG - chr2_4:61136910-61136929 Msa0339860:exon 30.0%
GAATACAACTGAGAATTTAC+TGG - chr2_4:61136946-61136965 Msa0339860:five_prime_UTR 30.0%
ATGCTCCTAGTCCTAAAATT+TGG + chr2_4:61135334-61135353 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG + chr2_4:61135366-61135385 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG + chr2_4:61135367-61135386 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG - chr2_4:61135370-61135389 Msa0339860:three_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG - chr2_4:61135371-61135390 Msa0339860:three_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG + chr2_4:61135412-61135431 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG + chr2_4:61135457-61135476 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG + chr2_4:61135516-61135535 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG + chr2_4:61135540-61135559 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG + chr2_4:61135541-61135560 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG - chr2_4:61135574-61135593 Msa0339860:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG - chr2_4:61135733-61135752 Msa0339860:intron 35.0%
CTTATCCGTTATCACTATTG+GGG - chr2_4:61135734-61135753 Msa0339860:intron 35.0%
TTGAGACATGCTTGCAATTT+CGG + chr2_4:61135834-61135853 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG + chr2_4:61135926-61135945 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG + chr2_4:61135927-61135946 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG + chr2_4:61136574-61136593 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG - chr2_4:61136674-61136693 Msa0339860:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG - chr2_4:61136741-61136760 Msa0339860:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG + chr2_4:61136868-61136887 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG + chr2_4:61136877-61136896 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG - chr2_4:61136909-61136928 Msa0339860:exon 35.0%
ATGCTCCTAGTCCTAAAATT+TGG + chr2_4:61135334-61135353 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG + chr2_4:61135366-61135385 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG + chr2_4:61135367-61135386 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG - chr2_4:61135370-61135389 Msa0339860:three_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG - chr2_4:61135371-61135390 Msa0339860:three_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG + chr2_4:61135412-61135431 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG + chr2_4:61135457-61135476 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG + chr2_4:61135516-61135535 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG + chr2_4:61135540-61135559 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG + chr2_4:61135541-61135560 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG - chr2_4:61135574-61135593 Msa0339860:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG - chr2_4:61135733-61135752 Msa0339860:intron 35.0%
CTTATCCGTTATCACTATTG+GGG - chr2_4:61135734-61135753 Msa0339860:intron 35.0%
TTGAGACATGCTTGCAATTT+CGG + chr2_4:61135834-61135853 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG + chr2_4:61135926-61135945 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG + chr2_4:61135927-61135946 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG + chr2_4:61136574-61136593 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG - chr2_4:61136674-61136693 Msa0339860:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG - chr2_4:61136741-61136760 Msa0339860:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG + chr2_4:61136868-61136887 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG + chr2_4:61136877-61136896 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG - chr2_4:61136909-61136928 Msa0339860:exon 35.0%
GAAAGGAAGGTTGCAATCTT+TGG + chr2_4:61135444-61135463 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG + chr2_4:61135589-61135608 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG - chr2_4:61135666-61135685 Msa0339860:intron 40.0%
CATCAACTACCACTGATGAT+GGG - chr2_4:61135667-61135686 Msa0339860:intron 40.0%
! ATCAACTACCACTGATGATG+GGG - chr2_4:61135668-61135687 Msa0339860:intron 40.0%
GGCTTATCCGTTATCACTAT+TGG - chr2_4:61135732-61135751 Msa0339860:intron 40.0%
TTCCCTTGGACAATATGACA+TGG - chr2_4:61135921-61135940 Msa0339860:intron 40.0%
CACATGCAGTCAACTTACTA+GGG + chr2_4:61136096-61136115 None:intergenic 40.0%
ACACATGCAGTCAACTTACT+AGG + chr2_4:61136097-61136116 None:intergenic 40.0%
! AGTAAGTTGACTGCATGTGT+TGG - chr2_4:61136097-61136116 Msa0339860:intron 40.0%
GGCAAATGGTCACGATTTAA+AGG - chr2_4:61136234-61136253 Msa0339860:intron 40.0%
AATCGCAAACACATCTCTAG+TGG - chr2_4:61136354-61136373 Msa0339860:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG - chr2_4:61136599-61136618 Msa0339860:CDS 40.0%
GAAAGGAAGGTTGCAATCTT+TGG + chr2_4:61135444-61135463 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG + chr2_4:61135589-61135608 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG - chr2_4:61135666-61135685 Msa0339860:intron 40.0%
CATCAACTACCACTGATGAT+GGG - chr2_4:61135667-61135686 Msa0339860:intron 40.0%
! ATCAACTACCACTGATGATG+GGG - chr2_4:61135668-61135687 Msa0339860:intron 40.0%
GGCTTATCCGTTATCACTAT+TGG - chr2_4:61135732-61135751 Msa0339860:intron 40.0%
TTCCCTTGGACAATATGACA+TGG - chr2_4:61135921-61135940 Msa0339860:intron 40.0%
CACATGCAGTCAACTTACTA+GGG + chr2_4:61136096-61136115 None:intergenic 40.0%
ACACATGCAGTCAACTTACT+AGG + chr2_4:61136097-61136116 None:intergenic 40.0%
! AGTAAGTTGACTGCATGTGT+TGG - chr2_4:61136097-61136116 Msa0339860:intron 40.0%
GGCAAATGGTCACGATTTAA+AGG - chr2_4:61136234-61136253 Msa0339860:intron 40.0%
AATCGCAAACACATCTCTAG+TGG - chr2_4:61136354-61136373 Msa0339860:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG - chr2_4:61136599-61136618 Msa0339860:CDS 40.0%
TGCTACAGCCATTGATGCTT+CGG - chr2_4:61135632-61135651 Msa0339860:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG + chr2_4:61135643-61135662 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG - chr2_4:61135641-61135660 Msa0339860:CDS 45.0%
! GCCAAAACGAGTGACTAGTT+TGG - chr2_4:61136213-61136232 Msa0339860:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG + chr2_4:61136217-61136236 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG - chr2_4:61136220-61136239 Msa0339860:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG - chr2_4:61136705-61136724 Msa0339860:CDS 45.0%
TGCTACAGCCATTGATGCTT+CGG - chr2_4:61135632-61135651 Msa0339860:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG + chr2_4:61135643-61135662 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG - chr2_4:61135641-61135660 Msa0339860:CDS 45.0%
! GCCAAAACGAGTGACTAGTT+TGG - chr2_4:61136213-61136232 Msa0339860:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG + chr2_4:61136217-61136236 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG - chr2_4:61136220-61136239 Msa0339860:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG - chr2_4:61136705-61136724 Msa0339860:CDS 45.0%
! GGAGCATCATCTCAATCCCT+TGG - chr2_4:61135347-61135366 Msa0339860:three_prime_UTR 50.0%
GCTGTAGCAGCAACAGGATT+TGG + chr2_4:61135600-61135619 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG + chr2_4:61135606-61135625 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG + chr2_4:61135679-61135698 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG - chr2_4:61136750-61136769 Msa0339860:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG - chr2_4:61136756-61136775 Msa0339860:CDS 50.0%
! GGAGCATCATCTCAATCCCT+TGG - chr2_4:61135347-61135366 Msa0339860:three_prime_UTR 50.0%
GCTGTAGCAGCAACAGGATT+TGG + chr2_4:61135600-61135619 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG + chr2_4:61135606-61135625 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG + chr2_4:61135679-61135698 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG - chr2_4:61136750-61136769 Msa0339860:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG - chr2_4:61136756-61136775 Msa0339860:CDS 50.0%
AGAGTGGGCCACGTCAGCAA+TGG - chr2_4:61135386-61135405 Msa0339860:three_prime_UTR 60.0%
TGCAGTGGCCATTGCTGACG+TGG + chr2_4:61135397-61135416 None:intergenic 60.0%
AGAGTGGGCCACGTCAGCAA+TGG - chr2_4:61135386-61135405 Msa0339860:three_prime_UTR 60.0%
TGCAGTGGCCATTGCTGACG+TGG + chr2_4:61135397-61135416 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61135300 61137032 61135300 ID=Msa0339860;Name=Msa0339860
chr2_4 mRNA 61135300 61137032 61135300 ID=Msa0339860-mRNA-1;Parent=Msa0339860;Name=Msa0339860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=105|1|1|1|1|1|2|220|170
chr2_4 exon 61135300 61135681 61135300 ID=Msa0339860-mRNA-1:exon:19113;Parent=Msa0339860-mRNA-1
chr2_4 exon 61136577 61137032 61136577 ID=Msa0339860-mRNA-1:exon:19112;Parent=Msa0339860-mRNA-1
chr2_4 five_prime_UTR 61136928 61137032 61136928 ID=Msa0339860-mRNA-1:five_prime_utr;Parent=Msa0339860-mRNA-1
chr2_4 CDS 61136577 61136927 61136577 ID=Msa0339860-mRNA-1:cds;Parent=Msa0339860-mRNA-1
chr2_4 CDS 61135520 61135681 61135520 ID=Msa0339860-mRNA-1:cds;Parent=Msa0339860-mRNA-1
chr2_4 three_prime_UTR 61135300 61135519 61135300 ID=Msa0339860-mRNA-1:three_prime_utr;Parent=Msa0339860-mRNA-1
Gene Sequence

>Msa0339860

ATGGCCACTGCATTATTTGCATCATCATCATCATCTCCAAAGATTGCAACCTTCCTTTCAACATCATCTTCTTCTTCTTTCCATTTCAACACACGTTTTTACTCACTTCCAACAACTTCTTCATCTTTCTCTCCCATTATCACTACTACAACCAGAAAATCCATATTTTTTCAAAGGAAGTCCAAACTATGGCCAAATCCTGTTGCTGCTACAGCTGTTGAAGATGCTGCTACAGCCATTGATGCTTCGGAGCAATTGGTTTCATCAACTACCACTGATGATGGGGTGTCTCTTATCGTATCAGCTCTTTTCTTCATTGCTTTCATTGGCTTATCCGTTATCACTATTGGGGTTATCTATTTAGCAGTAACAGATTTCTTGACAAAGAGAGAGAAGGAAAAATTTGAGAAAGAAGAAGCAGCTAGCGGAAAGAAGAAAAAGAAAAGAAAAGTAGTAAGGGCAGGACCTAAAGGATTTGGTCAAAAGATTGTTCAAACTGAAGATGATGATTGA

Protein sequence

>Msa0339860

MATALFASSSSSPKIATFLSTSSSSSFHFNTRFYSLPTTSSSFSPIITTTTRKSIFFQRKSKLWPNPVAATAVEDAATAIDASEQLVSSTTTDDGVSLIVSALFFIAFIGLSVITIGVIYLAVTDFLTKREKEKFEKEEAASGKKKKKRKVVRAGPKGFGQKIVQTEDDD*