AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365870 MtrunA17_Chr1g0200261 94.203 138 4 2 1 138 1 134 8.78e-90 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365870 AT4G32915.1 62.366 93 34 1 45 136 61 153 6.81e-38 126

Find 45 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTCAGGGACTAAAT+TGG 0.236045 tig0018415:+19916 Msa1365870:five_prime_UTR
ATCTTGTACCTTGAATTTCT+TGG 0.244732 tig0018415:+22517 Msa1365870:three_prime_UTR
TTTGAGAGCACCTGCTCTTA+TGG 0.251754 tig0018415:-20729 None:intergenic
CACCGTTGATCAAATGTTTC+AGG 0.262067 tig0018415:-22290 None:intergenic
TAGTCCACATTTAGGACTTT+TGG 0.264895 tig0018415:-22444 None:intergenic
TTATTCCAGGTTGAAGAATT+TGG 0.268843 tig0018415:+20287 Msa1365870:intron
TGATAATGTATTTGTATATA+TGG 0.296042 tig0018415:+22662 Msa1365870:three_prime_UTR
ATGTAAGGCTCCTCATAGTT+TGG 0.335054 tig0018415:-22414 None:intergenic
ATTGAGATTGAGAGGGATAA+GGG 0.335680 tig0018415:+19986 Msa1365870:five_prime_UTR
GATTGAGATTGAGAGGGATA+AGG 0.343169 tig0018415:+19985 Msa1365870:five_prime_UTR
AAAATTATCGTATTTATAGA+AGG 0.357766 tig0018415:+19875 None:intergenic
GACAATGATGATAACGATAA+TGG 0.386635 tig0018415:-20062 None:intergenic
TTATGGAGGGCTCAACGCTT+TGG 0.387176 tig0018415:-20712 None:intergenic
CCTAAAATTCAGCAGGTGAT+AGG 0.408712 tig0018415:+20311 Msa1365870:CDS
TGTCAGGTTTGGACAGCTGC+AGG 0.412387 tig0018415:+20679 Msa1365870:intron
ACCTCCGAATGTGTCTCATT+TGG 0.426635 tig0018415:+20166 Msa1365870:CDS
TCCTGCTGAGACTTTCTTCA+AGG 0.428362 tig0018415:+22714 Msa1365870:three_prime_UTR
AGCAACTCTAGTCCACATTT+AGG 0.432553 tig0018415:-22452 None:intergenic
ATGATGGAAATCAGGTCATA+TGG 0.438172 tig0018415:+22576 Msa1365870:three_prime_UTR
AAAAGGGAATAACCTCAGTT+GGG 0.444883 tig0018415:-20214 None:intergenic
TTAAAGAACCAAGAAATTCA+AGG 0.469932 tig0018415:-22525 None:intergenic
CGGAGGTTCAAGAGAGGAAG+AGG 0.471227 tig0018415:-20150 None:intergenic
TTTGCCAAATGAGACACATT+CGG 0.492233 tig0018415:-20170 None:intergenic
TGGAGGGCTCAACGCTTTGG+AGG 0.493750 tig0018415:-20709 None:intergenic
GAAACTGTAACAACTTGTGT+TGG 0.494807 tig0018415:-20097 None:intergenic
GAGAGCACCTGCTCTTATGG+AGG 0.507859 tig0018415:-20726 None:intergenic
CGCTTCTATTCCAAACTATG+AGG 0.512037 tig0018415:+22404 Msa1365870:CDS
ATTTGGTCCTAAAATTCAGC+AGG 0.517843 tig0018415:+20304 Msa1365870:CDS
TGAAAATTCAAAATAAGAGA+TGG 0.531211 tig0018415:-22554 None:intergenic
ACAAGTTGTTACAGTTTCGT+AGG 0.531872 tig0018415:+20102 Msa1365870:CDS
AGAGCACCTGCTCTTATGGA+GGG 0.536053 tig0018415:-20725 None:intergenic
AAATTCAGCAGGTGATAGGC+TGG 0.554955 tig0018415:+20315 Msa1365870:CDS
ACCTTGAAGAAAGTCTCAGC+AGG 0.555968 tig0018415:-22715 None:intergenic
GTTGAGCCCTCCATAAGAGC+AGG 0.560192 tig0018415:+20719 Msa1365870:CDS
CACCTGAAACATTTGATCAA+CGG 0.566695 tig0018415:+22288 Msa1365870:CDS
TAGAATTAAAGGAAGATGAG+TGG 0.581872 tig0018415:+20014 Msa1365870:exon
GTTTGGAATAGAAGCGAGGA+TGG 0.592379 tig0018415:-22397 None:intergenic
CACATTCGGAGGTTCAAGAG+AGG 0.598889 tig0018415:-20156 None:intergenic
GTCAGGTTTGGACAGCTGCA+GGG 0.601581 tig0018415:+20680 Msa1365870:intron
AGTTCCAAAAGTCCTAAATG+TGG 0.611769 tig0018415:+22440 Msa1365870:CDS
AAAGGGAATAACCTCAGTTG+GGG 0.623889 tig0018415:-20213 None:intergenic
GCCAAATGAGACACATTCGG+AGG 0.666539 tig0018415:-20167 None:intergenic
GGCAAAGTGTTGTTACTCAG+AGG 0.669633 tig0018415:+20035 Msa1365870:CDS
CATAGTTTGGAATAGAAGCG+AGG 0.676889 tig0018415:-22401 None:intergenic
TATCTCTCTTACCCCAACTG+AGG 0.701029 tig0018415:+20202 Msa1365870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAGAAAAAAAAAAAAA+GGG - tig0018415:20233-20252 None:intergenic 10.0%
!! TTGAAAAGAAAAAAAAAAAA+AGG - tig0018415:20234-20253 None:intergenic 10.0%
!!! TTTAAAATTTCTAATAGTAA+TGG + tig0018415:20255-20274 Msa1365870:intron 10.0%
!!! AAAACTCTTTTTATTTTATT+TGG + tig0018415:20350-20369 Msa1365870:intron 10.0%
!!! TTTTATAGTAATTTTATGAT+AGG + tig0018415:20377-20396 Msa1365870:intron 10.0%
!!! GTTTTTTTTTTTTTTTACAA+AGG + tig0018415:21983-22002 Msa1365870:intron 10.0%
!!! TTTATTTTATCATAAACAAA+GGG + tig0018415:22038-22057 Msa1365870:intron 10.0%
!! TCACTTAATATATTAAATAA+TGG - tig0018415:22110-22129 None:intergenic 10.0%
!! TTTATTCATTATTTGTAAAT+TGG + tig0018415:22318-22337 Msa1365870:intron 10.0%
!! TTATTCATTATTTGTAAATT+GGG + tig0018415:22319-22338 Msa1365870:intron 10.0%
!! AAATTGGAAATTAAAAAAAC+CGG + tig0018415:19932-19951 Msa1365870:five_prime_UTR 15.0%
!! ATATTTGTATTTCAAAAGTA+AGG - tig0018415:20837-20856 None:intergenic 15.0%
!!! TTGAAATACAAATATTTTCA+TGG + tig0018415:20842-20861 Msa1365870:intron 15.0%
!! TTCATCATTGAAATAAAAAA+TGG + tig0018415:21057-21076 Msa1365870:intron 15.0%
!!! AAATTATGATGCTTTTATTT+AGG + tig0018415:21383-21402 Msa1365870:intron 15.0%
!!! ATATTTTATATTTCATACAG+TGG + tig0018415:21953-21972 Msa1365870:intron 15.0%
!! TTGTTTATGATAAAATAAAG+TGG - tig0018415:22037-22056 None:intergenic 15.0%
!!! CTTTATTTTATCATAAACAA+AGG + tig0018415:22037-22056 Msa1365870:intron 15.0%
!!! ATAATGGAAATTTATTGTAA+GGG - tig0018415:22094-22113 None:intergenic 15.0%
!!! AATAATGGAAATTTATTGTA+AGG - tig0018415:22095-22114 None:intergenic 15.0%
!!! TGATAATGTATTTGTATATA+TGG + tig0018415:22662-22681 Msa1365870:three_prime_UTR 15.0%
!!! TCATAATTTTCAATTTCTTC+AGG + tig0018415:19905-19924 Msa1365870:five_prime_UTR 20.0%
!!! CATAATTTTCAATTTCTTCA+GGG + tig0018415:19906-19925 Msa1365870:five_prime_UTR 20.0%
!!! ATTTTATGATAGGATAATTG+AGG + tig0018415:20387-20406 Msa1365870:intron 20.0%
!!! TCAATCTAAATTTGAAGTTT+TGG - tig0018415:20653-20672 None:intergenic 20.0%
!! GAAATGAGAAATTAGAATAT+TGG - tig0018415:20756-20775 None:intergenic 20.0%
!!! AATTTTTTTTAGTGCAAAGT+CGG + tig0018415:21689-21708 Msa1365870:intron 20.0%
!! TGAAAATTCAAAATAAGAGA+TGG - tig0018415:22557-22576 None:intergenic 20.0%
!!! CTTATTTTGAATTTTCATGA+TGG + tig0018415:22560-22579 Msa1365870:three_prime_UTR 20.0%
!!! TAAGGGTTTTGTAGAATTAA+AGG + tig0018415:20003-20022 Msa1365870:five_prime_UTR 25.0%
!!! GCTTAACATTTTGTTTCTAA+AGG + tig0018415:20625-20644 Msa1365870:intron 25.0%
! TGTATTTCAAAAGTAAGGTT+CGG - tig0018415:20832-20851 None:intergenic 25.0%
!! TACAAATATTTTCATGGAGA+TGG + tig0018415:20848-20867 Msa1365870:intron 25.0%
! TATTGTATGTTAGTTGTTCA+TGG + tig0018415:20891-20910 Msa1365870:intron 25.0%
! CTAAGATTACAAACACAAAT+AGG + tig0018415:21114-21133 Msa1365870:intron 25.0%
!! TCTGAAAACTATGTTGTTTA+TGG + tig0018415:21286-21305 Msa1365870:intron 25.0%
!! CTGAAAACTATGTTGTTTAT+GGG + tig0018415:21287-21306 Msa1365870:intron 25.0%
! ACTCATTTAAAAAACGTTCA+TGG - tig0018415:22169-22188 None:intergenic 25.0%
!!! ATGAACGTTTTTTAAATGAG+TGG + tig0018415:22168-22187 Msa1365870:intron 25.0%
!!! ACTTTTGGAACTTTAATGTA+AGG - tig0018415:22432-22451 None:intergenic 25.0%
! TTAAAGAACCAAGAAATTCA+AGG - tig0018415:22528-22547 None:intergenic 25.0%
AATTTCTTCAGGGACTAAAT+TGG + tig0018415:19916-19935 Msa1365870:five_prime_UTR 30.0%
!! TTAACACGTTGTTTTATCAC+CGG - tig0018415:19954-19973 Msa1365860:five_prime_UTR 30.0%
!!! TTTTGAGATTGAGATTGAGA+GGG + tig0018415:19979-19998 Msa1365870:five_prime_UTR 30.0%
TAGAATTAAAGGAAGATGAG+TGG + tig0018415:20014-20033 Msa1365870:exon 30.0%
! GACAATGATGATAACGATAA+TGG - tig0018415:20065-20084 None:intergenic 30.0%
! AACAACTTGTGTTGGATTTT+CGG - tig0018415:20092-20111 None:intergenic 30.0%
! TTATTCCAGGTTGAAGAATT+TGG + tig0018415:20287-20306 Msa1365870:intron 30.0%
!!! TATTTTAACAAACAGGTGGT+GGG - tig0018415:20438-20457 None:intergenic 30.0%
ATGCAACACAATATCAAACA+TGG - tig0018415:20575-20594 None:intergenic 30.0%
!! TTTAGATTGATTTGTGTGTC+AGG + tig0018415:20663-20682 Msa1365870:intron 30.0%
!! CTCATTTCATATCCTTGTTT+TGG + tig0018415:20768-20787 Msa1365870:intron 30.0%
ATTAGAGAAACTCCAAAACA+AGG - tig0018415:20783-20802 None:intergenic 30.0%
TATGTTAGTTGTTCATGGTT+TGG + tig0018415:20896-20915 Msa1365870:intron 30.0%
! TAGTTCAGTTCATACTTTTC+TGG - tig0018415:20956-20975 None:intergenic 30.0%
ATTGCTACATGCTAAACAAA+AGG - tig0018415:21025-21044 None:intergenic 30.0%
ATGAGAATCATAAGGTTGAA+AGG - tig0018415:21089-21108 None:intergenic 30.0%
TAGTCACTATGAGAATCATA+AGG - tig0018415:21097-21116 None:intergenic 30.0%
GTTTATTAACTCTTACACGT+AGG + tig0018415:21200-21219 Msa1365870:intron 30.0%
TAAACTATCAGTTATCTCAC+AGG - tig0018415:21539-21558 None:intergenic 30.0%
! TGTTTTCAGTTCATGAATGA+AGG - tig0018415:21783-21802 None:intergenic 30.0%
CGAGAAGAAAGCAAATAATA+TGG - tig0018415:21889-21908 None:intergenic 30.0%
! TACAAAGGAGCAAATTTTCT+AGG + tig0018415:21998-22017 Msa1365870:intron 30.0%
! ACAAAGGAGCAAATTTTCTA+GGG + tig0018415:21999-22018 Msa1365870:intron 30.0%
ATCATAAACAAAGGGAAGAA+AGG + tig0018415:22046-22065 Msa1365870:intron 30.0%
ACGTTCATGGAATTAAAATC+AGG - tig0018415:22156-22175 None:intergenic 30.0%
AAATGAGTGGTAGAAAACAT+TGG + tig0018415:22181-22200 Msa1365870:intron 30.0%
! AGTCTTCATGAGTTTCTTTT+AGG - tig0018415:22494-22513 None:intergenic 30.0%
ATCTTGTACCTTGAATTTCT+TGG + tig0018415:22517-22536 Msa1365870:three_prime_UTR 30.0%
!! GAATTTTCATGATGGAAATC+AGG + tig0018415:22568-22587 Msa1365870:three_prime_UTR 30.0%
!!! GTTTTGAGATTGAGATTGAG+AGG + tig0018415:19978-19997 Msa1365870:five_prime_UTR 35.0%
ATTGAGATTGAGAGGGATAA+GGG + tig0018415:19986-20005 Msa1365870:five_prime_UTR 35.0%
GAAACTGTAACAACTTGTGT+TGG - tig0018415:20100-20119 None:intergenic 35.0%
ACAAGTTGTTACAGTTTCGT+AGG + tig0018415:20102-20121 Msa1365870:CDS 35.0%
TTTGCCAAATGAGACACATT+CGG - tig0018415:20173-20192 None:intergenic 35.0%
AAAAGGGAATAACCTCAGTT+GGG - tig0018415:20217-20236 None:intergenic 35.0%
AAAAAGGGAATAACCTCAGT+TGG - tig0018415:20218-20237 None:intergenic 35.0%
ATGGTGATTCATGTTATTCC+AGG + tig0018415:20274-20293 Msa1365870:intron 35.0%
ATTTGGTCCTAAAATTCAGC+AGG + tig0018415:20304-20323 Msa1365870:CDS 35.0%
!!! GTATTTTAACAAACAGGTGG+TGG - tig0018415:20439-20458 None:intergenic 35.0%
!!! GAAGGGGTATTTTAACAAAC+AGG - tig0018415:20445-20464 None:intergenic 35.0%
! GAATCCAGTGTTGGAATAAA+AGG - tig0018415:20474-20493 None:intergenic 35.0%
AAACAACATGAATCCAGTGT+TGG - tig0018415:20483-20502 None:intergenic 35.0%
AACACTGGATTCATGTTGTT+TGG + tig0018415:20482-20501 Msa1365870:intron 35.0%
! ACACTGGATTCATGTTGTTT+GGG + tig0018415:20483-20502 Msa1365870:intron 35.0%
ACATCCATGCTAACAAACAT+TGG - tig0018415:20510-20529 None:intergenic 35.0%
!! ATTGATTTGTGTGTCAGGTT+TGG + tig0018415:20668-20687 Msa1365870:intron 35.0%
!!! TTTTCTGGTTCAGTTTCGTT+CGG - tig0018415:20941-20960 None:intergenic 35.0%
GTTTGTGACATTCCAGATTT+AGG + tig0018415:21345-21364 Msa1365870:intron 35.0%
CGAACACTAAATCCTAAATC+TGG - tig0018415:21360-21379 None:intergenic 35.0%
! TGCTCGATTCGTGAATTATT+TGG + tig0018415:21579-21598 Msa1365870:intron 35.0%
TTGGTGCAAATTGTTCTTTC+CGG + tig0018415:21598-21617 Msa1365870:intron 35.0%
TTGTGCTGAACTGTACAAAA+TGG + tig0018415:21663-21682 Msa1365870:intron 35.0%
AACAAAGGGAAGAAAGGAAT+AGG + tig0018415:22052-22071 Msa1365870:intron 35.0%
ACAAAGGGAAGAAAGGAATA+GGG + tig0018415:22053-22072 Msa1365870:intron 35.0%
! TAGAAAACATTGGTGCTTGT+TGG + tig0018415:22191-22210 Msa1365870:intron 35.0%
CACCTGAAACATTTGATCAA+CGG + tig0018415:22288-22307 Msa1365870:CDS 35.0%
ATAGATTGCTATCCTTGACA+GGG + tig0018415:22371-22390 Msa1365870:intron 35.0%
AGTTCCAAAAGTCCTAAATG+TGG + tig0018415:22440-22459 Msa1365870:CDS 35.0%
!! TAGTCCACATTTAGGACTTT+TGG - tig0018415:22447-22466 None:intergenic 35.0%
! ATGATGGAAATCAGGTCATA+TGG + tig0018415:22576-22595 Msa1365870:three_prime_UTR 35.0%
GATTGAGATTGAGAGGGATA+AGG + tig0018415:19985-20004 Msa1365870:five_prime_UTR 40.0%
AAAGGGAATAACCTCAGTTG+GGG - tig0018415:20216-20235 None:intergenic 40.0%
TAGGACCAAATTCTTCAACC+TGG - tig0018415:20295-20314 None:intergenic 40.0%
! CCTATCACCTGCTGAATTTT+AGG - tig0018415:20314-20333 None:intergenic 40.0%
CCTAAAATTCAGCAGGTGAT+AGG + tig0018415:20311-20330 Msa1365870:CDS 40.0%
GGATAATTGAGGAACAACAC+TGG + tig0018415:20398-20417 Msa1365870:intron 40.0%
!!! GGGGTATTTTAACAAACAGG+TGG - tig0018415:20442-20461 None:intergenic 40.0%
! CCAGTGTTGGAATAAAAGGT+GGG - tig0018415:20470-20489 None:intergenic 40.0%
! TCCAGTGTTGGAATAAAAGG+TGG - tig0018415:20471-20490 None:intergenic 40.0%
!! AGTTGTTCATGGTTTGGTTC+AGG + tig0018415:20902-20921 Msa1365870:intron 40.0%
GAGTTACTGACATGCTACAA+AGG - tig0018415:21448-21467 None:intergenic 40.0%
TATCAGTTATCTCACAGGTC+AGG - tig0018415:21534-21553 None:intergenic 40.0%
! TAGCAGTTCGGTTCAGATTT+TGG + tig0018415:21719-21738 Msa1365870:intron 40.0%
! AGCAGTTCGGTTCAGATTTT+GGG + tig0018415:21720-21739 Msa1365870:intron 40.0%
! TAACAGCCCTTGTTATGAGT+TGG + tig0018415:21747-21766 Msa1365870:intron 40.0%
AGCCTACCAACTCATAACAA+GGG - tig0018415:21756-21775 None:intergenic 40.0%
TGCTTTCCTATACTTCACCT+TGG + tig0018415:21910-21929 Msa1365870:intron 40.0%
GGAATTAAAATCAGGTGCAG+AGG - tig0018415:22148-22167 None:intergenic 40.0%
CACCGTTGATCAAATGTTTC+AGG - tig0018415:22293-22312 None:intergenic 40.0%
GTCAAGGATAGCAATCTATC+AGG - tig0018415:22370-22389 None:intergenic 40.0%
GATAGATTGCTATCCTTGAC+AGG + tig0018415:22370-22389 Msa1365870:intron 40.0%
! CATAGTTTGGAATAGAAGCG+AGG - tig0018415:22404-22423 None:intergenic 40.0%
CGCTTCTATTCCAAACTATG+AGG + tig0018415:22404-22423 Msa1365870:CDS 40.0%
ATGTAAGGCTCCTCATAGTT+TGG - tig0018415:22417-22436 None:intergenic 40.0%
AGCAACTCTAGTCCACATTT+AGG - tig0018415:22455-22474 None:intergenic 40.0%
!! GGCAAAGTGTTGTTACTCAG+AGG + tig0018415:20035-20054 Msa1365870:CDS 45.0%
ACCTCCGAATGTGTCTCATT+TGG + tig0018415:20166-20185 Msa1365870:CDS 45.0%
TATCTCTCTTACCCCAACTG+AGG + tig0018415:20202-20221 Msa1365870:CDS 45.0%
AAATTCAGCAGGTGATAGGC+TGG + tig0018415:20315-20334 Msa1365870:CDS 45.0%
GAATAAAAGGTGGGTGGAAG+GGG - tig0018415:20461-20480 None:intergenic 45.0%
GGAATAAAAGGTGGGTGGAA+GGG - tig0018415:20462-20481 None:intergenic 45.0%
TGGAATAAAAGGTGGGTGGA+AGG - tig0018415:20463-20482 None:intergenic 45.0%
GTGTTGGAATAAAAGGTGGG+TGG - tig0018415:20467-20486 None:intergenic 45.0%
! CCCACCTTTTATTCCAACAC+TGG + tig0018415:20467-20486 Msa1365870:intron 45.0%
! GGGTCCAATGTTTGTTAGCA+TGG + tig0018415:20503-20522 Msa1365870:intron 45.0%
!! TTTGAGAGCACCTGCTCTTA+TGG - tig0018415:20732-20751 None:intergenic 45.0%
! TCTGGAATGTCACAAACCTG+CGG - tig0018415:21342-21361 None:intergenic 45.0%
TTGTTCTTTCCGGTGCAGTT+TGG + tig0018415:21608-21627 Msa1365870:intron 45.0%
CAGTTCAGCACAAACTGAAC+TGG - tig0018415:21656-21675 None:intergenic 45.0%
! GTCGGTTCAGTTTAGCAGTT+CGG + tig0018415:21707-21726 Msa1365870:intron 45.0%
!! AGCCCTTGTTATGAGTTGGT+AGG + tig0018415:21751-21770 Msa1365870:intron 45.0%
CAGCCTACCAACTCATAACA+AGG - tig0018415:21757-21776 None:intergenic 45.0%
GAAACAAACTTGCACGACCA+AGG - tig0018415:21930-21949 None:intergenic 45.0%
! AACATTGGTGCTTGTTGGCT+TGG + tig0018415:22196-22215 Msa1365870:intron 45.0%
CATATTGCGTAGCCAACTGA+CGG + tig0018415:22342-22361 Msa1365870:intron 45.0%
! GTTTGGAATAGAAGCGAGGA+TGG - tig0018415:22400-22419 None:intergenic 45.0%
TCCTGCTGAGACTTTCTTCA+AGG + tig0018415:22714-22733 Msa1365870:three_prime_UTR 45.0%
ACCTTGAAGAAAGTCTCAGC+AGG - tig0018415:22718-22737 None:intergenic 45.0%
!!! AATATAATATTTTTTTATCT+AGG + tig0018415:21471-21490 Msa1365870:intron 5.0%
CACATTCGGAGGTTCAAGAG+AGG - tig0018415:20159-20178 None:intergenic 50.0%
GCCAAATGAGACACATTCGG+AGG - tig0018415:20170-20189 None:intergenic 50.0%
TCGAAATGTGACAGCTCACG+AGG + tig0018415:20603-20622 Msa1365870:intron 50.0%
TTATGGAGGGCTCAACGCTT+TGG - tig0018415:20715-20734 None:intergenic 50.0%
! AGAGCACCTGCTCTTATGGA+GGG - tig0018415:20728-20747 None:intergenic 50.0%
GTTCGCTAACCAAACTGCAC+CGG - tig0018415:21620-21639 None:intergenic 50.0%
GCACGACCAAGGTGAAGTAT+AGG - tig0018415:21919-21938 None:intergenic 50.0%
! ATCTATCAGGCACCGTCAGT+TGG - tig0018415:22357-22376 None:intergenic 50.0%
CGGAGGTTCAAGAGAGGAAG+AGG - tig0018415:20153-20172 None:intergenic 55.0%
TGTCAGGTTTGGACAGCTGC+AGG + tig0018415:20679-20698 Msa1365870:intron 55.0%
GTCAGGTTTGGACAGCTGCA+GGG + tig0018415:20680-20699 Msa1365870:intron 55.0%
GTTGAGCCCTCCATAAGAGC+AGG + tig0018415:20719-20738 Msa1365870:CDS 55.0%
!! GAGAGCACCTGCTCTTATGG+AGG - tig0018415:20729-20748 None:intergenic 55.0%
!! TTCCATGTCTGAAGCACCGC+AGG + tig0018415:21323-21342 Msa1365870:intron 55.0%
AACCTGCGGTGCTTCAGACA+TGG - tig0018415:21328-21347 None:intergenic 55.0%
! ATCAGGTGCAGAGGCATGTC+AGG - tig0018415:22139-22158 None:intergenic 55.0%
CGAGGATGGTATCCCTGTCA+AGG - tig0018415:22386-22405 None:intergenic 55.0%
TGGAGGGCTCAACGCTTTGG+AGG - tig0018415:20712-20731 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0018415 gene 19885 22743 19885 ID=Msa1365870;Name=Msa1365870
tig0018415 mRNA 19885 22743 19885 ID=Msa1365870-mRNA-1;Parent=Msa1365870;Name=Msa1365870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=144|1|1|1|1|1|5|276|138
tig0018415 exon 19885 20223 19885 ID=Msa1365870-mRNA-1:exon:14858;Parent=Msa1365870-mRNA-1
tig0018415 exon 20296 20336 20296 ID=Msa1365870-mRNA-1:exon:14859;Parent=Msa1365870-mRNA-1
tig0018415 exon 20685 20740 20685 ID=Msa1365870-mRNA-1:exon:14860;Parent=Msa1365870-mRNA-1
tig0018415 exon 22261 22309 22261 ID=Msa1365870-mRNA-1:exon:14861;Parent=Msa1365870-mRNA-1
tig0018415 exon 22392 22743 22392 ID=Msa1365870-mRNA-1:exon:14862;Parent=Msa1365870-mRNA-1
tig0018415 five_prime_UTR 19885 20028 19885 ID=Msa1365870-mRNA-1:five_prime_utr;Parent=Msa1365870-mRNA-1
tig0018415 CDS 20029 20223 20029 ID=Msa1365870-mRNA-1:cds;Parent=Msa1365870-mRNA-1
tig0018415 CDS 20296 20336 20296 ID=Msa1365870-mRNA-1:cds;Parent=Msa1365870-mRNA-1
tig0018415 CDS 20685 20740 20685 ID=Msa1365870-mRNA-1:cds;Parent=Msa1365870-mRNA-1
tig0018415 CDS 22261 22309 22261 ID=Msa1365870-mRNA-1:cds;Parent=Msa1365870-mRNA-1
tig0018415 CDS 22392 22467 22392 ID=Msa1365870-mRNA-1:cds;Parent=Msa1365870-mRNA-1
tig0018415 three_prime_UTR 22468 22743 22468 ID=Msa1365870-mRNA-1:three_prime_utr;Parent=Msa1365870-mRNA-1
Gene Sequence

>Msa1365870

ATGAGTGGCAAAGTGTTGTTACTCAGAGGAACACCATTATCGTTATCATCATTGTCGAATCCGAAAATCCAACACAAGTTGTTACAGTTTCGTAGGTTGTCTTCAAAAACTAACTGTTGTTCCTCTTCCTCTCTTGAACCTCCGAATGTGTCTCATTTGGCAAAAACAGCTCATATCTCTCTTACCCCAACTGAGGTTGAAGAATTTGGTCCTAAAATTCAGCAGGTGATAGGCTGGTTTGGACAGCTGCAGGGTGTTGACCTCCAAAGCGTTGAGCCCTCCATAAGAGCAGATACTGAAAACAATTTGCGTGACAATACACCTGAAACATTTGATCAACGGGATACCATCCTCGCTTCTATTCCAAACTATGAGGAGCCTTACATTAAAGTTCCAAAAGTCCTAAATGTGGACTAG

Protein sequence

>Msa1365870

MSGKVLLLRGTPLSLSSLSNPKIQHKLLQFRRLSSKTNCCSSSSLEPPNVSHLAKTAHISLTPTEVEEFGPKIQQVIGWFGQLQGVDLQSVEPSIRADTENNLRDNTPETFDQRDTILASIPNYEEPYIKVPKVLNVD*